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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP029972 Lactobacillus kefiri strain DH5 plasmid pDH5, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP029971 Lactobacillus kefiri strain DH5 chromosome, complete genome 2 crisprs csa3,DinG,cas9,cas1,cas2,csn2,cas3,DEDDh 1 7 159 1

Results visualization

1. NZ_CP029972
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 59452 55 Streptococcus_phage(22.22%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP029971
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029971_1 1635146-1635763 TypeII NA
9 spacers
csn2,cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029971_2 1692705-1692833 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP029971_1 1.3|1635314|30|NZ_CP029971|CRISPRCasFinder,PILER-CR 1635314-1635343 30 NZ_CP029971.1 244069-244098 0 1.0

1. spacer 1.3|1635314|30|NZ_CP029971|CRISPRCasFinder,PILER-CR matches to position: 244069-244098, mismatch: 0, identity: 1.0

ctgtgatgtggtcgttactgaccaccattc	CRISPR spacer
ctgtgatgtggtcgttactgaccaccattc	Protospacer
******************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP029971_1 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder 1635182-1635211 30 NZ_CP011405 Lactobacillus salivarius str. Ren plasmid pR2, complete sequence 13604-13633 0 1.0
NZ_CP029971_1 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder 1635182-1635211 30 CP033373 Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence 95794-95823 0 1.0
NZ_CP029971_1 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder 1635182-1635211 30 CP033373 Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence 192773-192802 0 1.0
NZ_CP029971_1 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder 1635182-1635211 30 NC_006530 Lactobacillus salivarius UCC118 plasmid pSF118-44, complete sequence 21260-21289 0 1.0
NZ_CP029971_1 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder 1635182-1635211 30 NZ_CP045730 Lactobacillus gastricus strain LG045 plasmid unnamed1, complete sequence 33310-33339 0 1.0
NZ_CP029971_1 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder 1635182-1635211 30 CP031017 Lactobacillus helveticus isolate NWC_2_3 plasmid pNWC_2_3, complete sequence 10783-10812 0 1.0
NZ_CP029971_1 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder 1635182-1635211 30 CP031017 Lactobacillus helveticus isolate NWC_2_3 plasmid pNWC_2_3, complete sequence 19300-19329 0 1.0
NZ_CP029971_1 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder 1635182-1635211 30 NZ_CP008839 Lactobacillus gasseri DSM 14869 plasmid pEB01-1, complete sequence 47572-47601 0 1.0
NZ_CP029971_1 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder 1635182-1635211 30 NZ_CP019032 Lactobacillus fermentum strain SNUV175 plasmid pSNU175-3, complete sequence 6214-6243 1 0.967
NZ_CP029971_1 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder 1635182-1635211 30 NZ_CP020094 Lactobacillus plantarum strain K25 plasmid unnamed1, complete sequence 14653-14682 1 0.967
NZ_CP029971_1 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder 1635182-1635211 30 CP002035 Lactobacillus salivarius CECT 5713 plasmid pHN1, complete sequence 21580-21609 1 0.967
NZ_CP029971_1 1.9|1635179|33|NZ_CP029971|CRT 1635179-1635211 33 CP033373 Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence 192773-192805 3 0.909
NZ_CP029971_1 1.9|1635179|33|NZ_CP029971|CRT 1635179-1635211 33 CP033373 Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence 95791-95823 3 0.909
NZ_CP029971_1 1.9|1635179|33|NZ_CP029971|CRT 1635179-1635211 33 NZ_CP045730 Lactobacillus gastricus strain LG045 plasmid unnamed1, complete sequence 33310-33342 3 0.909
NZ_CP029971_1 1.9|1635179|33|NZ_CP029971|CRT 1635179-1635211 33 CP031017 Lactobacillus helveticus isolate NWC_2_3 plasmid pNWC_2_3, complete sequence 10783-10815 3 0.909
NZ_CP029971_1 1.9|1635179|33|NZ_CP029971|CRT 1635179-1635211 33 CP031017 Lactobacillus helveticus isolate NWC_2_3 plasmid pNWC_2_3, complete sequence 19300-19332 3 0.909
NZ_CP029971_1 1.9|1635179|33|NZ_CP029971|CRT 1635179-1635211 33 NZ_CP008839 Lactobacillus gasseri DSM 14869 plasmid pEB01-1, complete sequence 47572-47604 3 0.909
NZ_CP029971_1 1.9|1635179|33|NZ_CP029971|CRT 1635179-1635211 33 NZ_CP011405 Lactobacillus salivarius str. Ren plasmid pR2, complete sequence 13601-13633 3 0.909
NZ_CP029971_1 1.9|1635179|33|NZ_CP029971|CRT 1635179-1635211 33 NC_006530 Lactobacillus salivarius UCC118 plasmid pSF118-44, complete sequence 21257-21289 3 0.909
NZ_CP029971_1 1.9|1635179|33|NZ_CP029971|CRT 1635179-1635211 33 NZ_CP019032 Lactobacillus fermentum strain SNUV175 plasmid pSNU175-3, complete sequence 6211-6243 4 0.879
NZ_CP029971_1 1.9|1635179|33|NZ_CP029971|CRT 1635179-1635211 33 NZ_CP020094 Lactobacillus plantarum strain K25 plasmid unnamed1, complete sequence 14650-14682 4 0.879
NZ_CP029971_1 1.9|1635179|33|NZ_CP029971|CRT 1635179-1635211 33 CP002035 Lactobacillus salivarius CECT 5713 plasmid pHN1, complete sequence 21577-21609 4 0.879
NZ_CP029971_1 1.2|1635248|30|NZ_CP029971|CRISPRCasFinder,PILER-CR 1635248-1635277 30 NZ_LR214985 Mycoplasma cynos strain NCTC10142 plasmid 12 1463-1492 6 0.8
NZ_CP029971_1 1.2|1635248|30|NZ_CP029971|CRISPRCasFinder,PILER-CR 1635248-1635277 30 NZ_LR214985 Mycoplasma cynos strain NCTC10142 plasmid 12 2082-2111 6 0.8
NZ_CP029971_1 1.2|1635248|30|NZ_CP029971|CRISPRCasFinder,PILER-CR 1635248-1635277 30 NZ_LR214986 Mycoplasma cynos strain NCTC10142 plasmid 13 858219-858248 6 0.8
NZ_CP029971_1 1.3|1635314|30|NZ_CP029971|CRISPRCasFinder,PILER-CR 1635314-1635343 30 NC_014028 Salinibacter ruber M8 plasmid pSR56, complete sequence 15994-16023 7 0.767
NZ_CP029971_1 1.5|1635446|30|NZ_CP029971|CRISPRCasFinder,PILER-CR 1635446-1635475 30 CP011075 Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence 142279-142308 7 0.767
NZ_CP029971_1 1.10|1635245|33|NZ_CP029971|CRT 1635245-1635277 33 NZ_LR214985 Mycoplasma cynos strain NCTC10142 plasmid 12 1460-1492 7 0.788
NZ_CP029971_1 1.10|1635245|33|NZ_CP029971|CRT 1635245-1635277 33 NZ_LR214985 Mycoplasma cynos strain NCTC10142 plasmid 12 2082-2114 7 0.788
NZ_CP029971_1 1.10|1635245|33|NZ_CP029971|CRT 1635245-1635277 33 NZ_LR214986 Mycoplasma cynos strain NCTC10142 plasmid 13 858219-858251 7 0.788
NZ_CP029971_1 1.3|1635314|30|NZ_CP029971|CRISPRCasFinder,PILER-CR 1635314-1635343 30 NZ_CP033222 Parasedimentitalea marina strain W43 plasmid pW43C, complete sequence 38347-38376 8 0.733
NZ_CP029971_1 1.3|1635314|30|NZ_CP029971|CRISPRCasFinder,PILER-CR 1635314-1635343 30 NZ_CP044283 Rhodococcus erythropolis strain X5 plasmid pRhX5, complete sequence 397773-397802 8 0.733
NZ_CP029971_1 1.3|1635314|30|NZ_CP029971|CRISPRCasFinder,PILER-CR 1635314-1635343 30 NZ_CP046100 Rhodococcus sp. AQ5-07 plasmid unnamed1, complete sequence 43438-43467 8 0.733
NZ_CP029971_1 1.3|1635314|30|NZ_CP029971|CRISPRCasFinder,PILER-CR 1635314-1635343 30 NZ_CP007257 Rhodococcus erythropolis R138 plasmid pLRE138, complete sequence 183980-184009 8 0.733
NZ_CP029971_1 1.3|1635314|30|NZ_CP029971|CRISPRCasFinder,PILER-CR 1635314-1635343 30 NZ_CP042915 Rhodococcus qingshengii strain RL1 plasmid unnamed2 253281-253310 8 0.733
NZ_CP029971_1 1.3|1635314|30|NZ_CP029971|CRISPRCasFinder,PILER-CR 1635314-1635343 30 NZ_CP007449 Yersinia enterocolitica LC20 plasmid plasmid1_80K, complete sequence 21685-21714 8 0.733
NZ_CP029971_1 1.11|1635311|33|NZ_CP029971|CRT 1635311-1635343 33 NZ_CP033222 Parasedimentitalea marina strain W43 plasmid pW43C, complete sequence 38344-38376 9 0.727
NZ_CP029971_1 1.11|1635311|33|NZ_CP029971|CRT 1635311-1635343 33 NC_014028 Salinibacter ruber M8 plasmid pSR56, complete sequence 15991-16023 9 0.727
NZ_CP029971_1 1.11|1635311|33|NZ_CP029971|CRT 1635311-1635343 33 NZ_CP044283 Rhodococcus erythropolis strain X5 plasmid pRhX5, complete sequence 397770-397802 11 0.667
NZ_CP029971_1 1.11|1635311|33|NZ_CP029971|CRT 1635311-1635343 33 NZ_CP046100 Rhodococcus sp. AQ5-07 plasmid unnamed1, complete sequence 43435-43467 11 0.667
NZ_CP029971_1 1.11|1635311|33|NZ_CP029971|CRT 1635311-1635343 33 NZ_CP007257 Rhodococcus erythropolis R138 plasmid pLRE138, complete sequence 183977-184009 11 0.667
NZ_CP029971_1 1.11|1635311|33|NZ_CP029971|CRT 1635311-1635343 33 NZ_CP042915 Rhodococcus qingshengii strain RL1 plasmid unnamed2 253278-253310 11 0.667

1. spacer 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder matches to NZ_CP011405 (Lactobacillus salivarius str. Ren plasmid pR2, complete sequence) position: , mismatch: 0, identity: 1.0

actggactcccacttagcactgaaagccgc	CRISPR spacer
actggactcccacttagcactgaaagccgc	Protospacer
******************************

2. spacer 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder matches to CP033373 (Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

actggactcccacttagcactgaaagccgc	CRISPR spacer
actggactcccacttagcactgaaagccgc	Protospacer
******************************

3. spacer 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder matches to CP033373 (Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

actggactcccacttagcactgaaagccgc	CRISPR spacer
actggactcccacttagcactgaaagccgc	Protospacer
******************************

4. spacer 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder matches to NC_006530 (Lactobacillus salivarius UCC118 plasmid pSF118-44, complete sequence) position: , mismatch: 0, identity: 1.0

actggactcccacttagcactgaaagccgc	CRISPR spacer
actggactcccacttagcactgaaagccgc	Protospacer
******************************

5. spacer 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder matches to NZ_CP045730 (Lactobacillus gastricus strain LG045 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

actggactcccacttagcactgaaagccgc	CRISPR spacer
actggactcccacttagcactgaaagccgc	Protospacer
******************************

6. spacer 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder matches to CP031017 (Lactobacillus helveticus isolate NWC_2_3 plasmid pNWC_2_3, complete sequence) position: , mismatch: 0, identity: 1.0

actggactcccacttagcactgaaagccgc	CRISPR spacer
actggactcccacttagcactgaaagccgc	Protospacer
******************************

7. spacer 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder matches to CP031017 (Lactobacillus helveticus isolate NWC_2_3 plasmid pNWC_2_3, complete sequence) position: , mismatch: 0, identity: 1.0

actggactcccacttagcactgaaagccgc	CRISPR spacer
actggactcccacttagcactgaaagccgc	Protospacer
******************************

8. spacer 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder matches to NZ_CP008839 (Lactobacillus gasseri DSM 14869 plasmid pEB01-1, complete sequence) position: , mismatch: 0, identity: 1.0

actggactcccacttagcactgaaagccgc	CRISPR spacer
actggactcccacttagcactgaaagccgc	Protospacer
******************************

9. spacer 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder matches to NZ_CP019032 (Lactobacillus fermentum strain SNUV175 plasmid pSNU175-3, complete sequence) position: , mismatch: 1, identity: 0.967

actggactcccacttagcactgaaagccgc	CRISPR spacer
actagactcccacttagcactgaaagccgc	Protospacer
***.**************************

10. spacer 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder matches to NZ_CP020094 (Lactobacillus plantarum strain K25 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.967

actggactcccacttagcactgaaagccgc	CRISPR spacer
actggactcccacttagtactgaaagccgc	Protospacer
*****************.************

11. spacer 1.1|1635182|30|NZ_CP029971|CRISPRCasFinder matches to CP002035 (Lactobacillus salivarius CECT 5713 plasmid pHN1, complete sequence) position: , mismatch: 1, identity: 0.967

actggactcccacttagcactgaaagccgc	CRISPR spacer
actagactcccacttagcactgaaagccgc	Protospacer
***.**************************

12. spacer 1.9|1635179|33|NZ_CP029971|CRT matches to CP033373 (Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.909

cccactggactcccacttagcactgaaagccgc	CRISPR spacer
ataactggactcccacttagcactgaaagccgc	Protospacer
 . ******************************

13. spacer 1.9|1635179|33|NZ_CP029971|CRT matches to CP033373 (Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.909

cccactggactcccacttagcactgaaagccgc	CRISPR spacer
ataactggactcccacttagcactgaaagccgc	Protospacer
 . ******************************

14. spacer 1.9|1635179|33|NZ_CP029971|CRT matches to NZ_CP045730 (Lactobacillus gastricus strain LG045 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.909

cccactggactcccacttagcactgaaagccgc	CRISPR spacer
ataactggactcccacttagcactgaaagccgc	Protospacer
 . ******************************

15. spacer 1.9|1635179|33|NZ_CP029971|CRT matches to CP031017 (Lactobacillus helveticus isolate NWC_2_3 plasmid pNWC_2_3, complete sequence) position: , mismatch: 3, identity: 0.909

cccactggactcccacttagcactgaaagccgc	CRISPR spacer
ataactggactcccacttagcactgaaagccgc	Protospacer
 . ******************************

16. spacer 1.9|1635179|33|NZ_CP029971|CRT matches to CP031017 (Lactobacillus helveticus isolate NWC_2_3 plasmid pNWC_2_3, complete sequence) position: , mismatch: 3, identity: 0.909

cccactggactcccacttagcactgaaagccgc	CRISPR spacer
ataactggactcccacttagcactgaaagccgc	Protospacer
 . ******************************

17. spacer 1.9|1635179|33|NZ_CP029971|CRT matches to NZ_CP008839 (Lactobacillus gasseri DSM 14869 plasmid pEB01-1, complete sequence) position: , mismatch: 3, identity: 0.909

cccactggactcccacttagcactgaaagccgc	CRISPR spacer
ataactggactcccacttagcactgaaagccgc	Protospacer
 . ******************************

18. spacer 1.9|1635179|33|NZ_CP029971|CRT matches to NZ_CP011405 (Lactobacillus salivarius str. Ren plasmid pR2, complete sequence) position: , mismatch: 3, identity: 0.909

cccactggactcccacttagcactgaaagccgc	CRISPR spacer
ataactggactcccacttagcactgaaagccgc	Protospacer
 . ******************************

19. spacer 1.9|1635179|33|NZ_CP029971|CRT matches to NC_006530 (Lactobacillus salivarius UCC118 plasmid pSF118-44, complete sequence) position: , mismatch: 3, identity: 0.909

cccactggactcccacttagcactgaaagccgc	CRISPR spacer
ataactggactcccacttagcactgaaagccgc	Protospacer
 . ******************************

20. spacer 1.9|1635179|33|NZ_CP029971|CRT matches to NZ_CP019032 (Lactobacillus fermentum strain SNUV175 plasmid pSNU175-3, complete sequence) position: , mismatch: 4, identity: 0.879

cccactggactcccacttagcactgaaagccgc	CRISPR spacer
ataactagactcccacttagcactgaaagccgc	Protospacer
 . ***.**************************

21. spacer 1.9|1635179|33|NZ_CP029971|CRT matches to NZ_CP020094 (Lactobacillus plantarum strain K25 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.879

cccactggactcccacttagcactgaaagccgc	CRISPR spacer
ataactggactcccacttagtactgaaagccgc	Protospacer
 . *****************.************

22. spacer 1.9|1635179|33|NZ_CP029971|CRT matches to CP002035 (Lactobacillus salivarius CECT 5713 plasmid pHN1, complete sequence) position: , mismatch: 4, identity: 0.879

cccactggactcccacttagcactgaaagccgc	CRISPR spacer
ataactagactcccacttagcactgaaagccgc	Protospacer
 . ***.**************************

23. spacer 1.2|1635248|30|NZ_CP029971|CRISPRCasFinder,PILER-CR matches to NZ_LR214985 (Mycoplasma cynos strain NCTC10142 plasmid 12) position: , mismatch: 6, identity: 0.8

ctgatgatcgaccatttgacgttcaaaatc	CRISPR spacer
atcttgagcgacaatttgacgttcaaaata	Protospacer
 *  *** **** **************** 

24. spacer 1.2|1635248|30|NZ_CP029971|CRISPRCasFinder,PILER-CR matches to NZ_LR214985 (Mycoplasma cynos strain NCTC10142 plasmid 12) position: , mismatch: 6, identity: 0.8

ctgatgatcgaccatttgacgttcaaaatc	CRISPR spacer
atcttgagcgacaatttgacgttcaaaata	Protospacer
 *  *** **** **************** 

25. spacer 1.2|1635248|30|NZ_CP029971|CRISPRCasFinder,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 6, identity: 0.8

ctgatgatcgaccatttgacgttcaaaatc	CRISPR spacer
atcttgagcgacaatttgacgttcaaaata	Protospacer
 *  *** **** **************** 

26. spacer 1.3|1635314|30|NZ_CP029971|CRISPRCasFinder,PILER-CR matches to NC_014028 (Salinibacter ruber M8 plasmid pSR56, complete sequence) position: , mismatch: 7, identity: 0.767

ctgtgatgtggtcgttactgaccaccattc	CRISPR spacer
cgtagatgtggtcgtcaccgaccaccatga	Protospacer
*   ***********.**.*********  

27. spacer 1.5|1635446|30|NZ_CP029971|CRISPRCasFinder,PILER-CR matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cgataatttgcggatgtttgaagcttggat	CRISPR spacer
ggataatttgcagatgtttcaagcgatgtt	Protospacer
 **********.******* ****   * *

28. spacer 1.10|1635245|33|NZ_CP029971|CRT matches to NZ_LR214985 (Mycoplasma cynos strain NCTC10142 plasmid 12) position: , mismatch: 7, identity: 0.788

cccctga----tgatcgaccatttgacgttcaaaatc	CRISPR spacer
----tgaatcttgagcgacaatttgacgttcaaaata	Protospacer
    ***    *** **** **************** 

29. spacer 1.10|1635245|33|NZ_CP029971|CRT matches to NZ_LR214985 (Mycoplasma cynos strain NCTC10142 plasmid 12) position: , mismatch: 7, identity: 0.788

cccctga----tgatcgaccatttgacgttcaaaatc	CRISPR spacer
----tgaatcttgagcgacaatttgacgttcaaaata	Protospacer
    ***    *** **** **************** 

30. spacer 1.10|1635245|33|NZ_CP029971|CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 7, identity: 0.788

cccctga----tgatcgaccatttgacgttcaaaatc	CRISPR spacer
----tgaatcttgagcgacaatttgacgttcaaaata	Protospacer
    ***    *** **** **************** 

31. spacer 1.3|1635314|30|NZ_CP029971|CRISPRCasFinder,PILER-CR matches to NZ_CP033222 (Parasedimentitalea marina strain W43 plasmid pW43C, complete sequence) position: , mismatch: 8, identity: 0.733

ctgtgatgtggtcgttactgaccaccattc	CRISPR spacer
aaacactgtggttgttactgatcaccattc	Protospacer
  ... ******.********.********

32. spacer 1.3|1635314|30|NZ_CP029971|CRISPRCasFinder,PILER-CR matches to NZ_CP044283 (Rhodococcus erythropolis strain X5 plasmid pRhX5, complete sequence) position: , mismatch: 8, identity: 0.733

ctgtgatgtggtcgttactgaccaccattc	CRISPR spacer
tcgtgatgtggtcgcaactgaccaccgcgt	Protospacer
..************. **********.. .

33. spacer 1.3|1635314|30|NZ_CP029971|CRISPRCasFinder,PILER-CR matches to NZ_CP046100 (Rhodococcus sp. AQ5-07 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ctgtgatgtggtcgttactgaccaccattc	CRISPR spacer
tggtgatgtggtcgcaactgaccaccgcgt	Protospacer
. ************. **********.. .

34. spacer 1.3|1635314|30|NZ_CP029971|CRISPRCasFinder,PILER-CR matches to NZ_CP007257 (Rhodococcus erythropolis R138 plasmid pLRE138, complete sequence) position: , mismatch: 8, identity: 0.733

ctgtgatgtggtcgttactgaccaccattc	CRISPR spacer
tggtgatgtggtcgcaactgaccaccgcgt	Protospacer
. ************. **********.. .

35. spacer 1.3|1635314|30|NZ_CP029971|CRISPRCasFinder,PILER-CR matches to NZ_CP042915 (Rhodococcus qingshengii strain RL1 plasmid unnamed2) position: , mismatch: 8, identity: 0.733

ctgtgatgtggtcgttactgaccaccattc	CRISPR spacer
tggtgatgtggtcgcaactgaccaccgcgt	Protospacer
. ************. **********.. .

36. spacer 1.3|1635314|30|NZ_CP029971|CRISPRCasFinder,PILER-CR matches to NZ_CP007449 (Yersinia enterocolitica LC20 plasmid plasmid1_80K, complete sequence) position: , mismatch: 8, identity: 0.733

ctgtgatgtggtcgttactgaccaccattc	CRISPR spacer
ttgtgatgtggtcattactgaccgtaacgg	Protospacer
.************.*********.. *.  

37. spacer 1.11|1635311|33|NZ_CP029971|CRT matches to NZ_CP033222 (Parasedimentitalea marina strain W43 plasmid pW43C, complete sequence) position: , mismatch: 9, identity: 0.727

cccctgtga-------tgtggtcgttactgaccaccattc	CRISPR spacer
-------gaaaaacactgtggttgttactgatcaccattc	Protospacer
       **       ******.********.********

38. spacer 1.11|1635311|33|NZ_CP029971|CRT matches to NC_014028 (Salinibacter ruber M8 plasmid pSR56, complete sequence) position: , mismatch: 9, identity: 0.727

cccctgtgatgtggtcgttactgaccaccattc	CRISPR spacer
cggcgtagatgtggtcgtcaccgaccaccatga	Protospacer
*  *   ***********.**.*********  

39. spacer 1.11|1635311|33|NZ_CP029971|CRT matches to NZ_CP044283 (Rhodococcus erythropolis strain X5 plasmid pRhX5, complete sequence) position: , mismatch: 11, identity: 0.667

cccctgtgatgtggtcgttactgaccaccattc	CRISPR spacer
tggtcgtgatgtggtcgcaactgaccaccgcgt	Protospacer
.  ..************. **********.. .

40. spacer 1.11|1635311|33|NZ_CP029971|CRT matches to NZ_CP046100 (Rhodococcus sp. AQ5-07 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.667

cccctgtgatgtggtcgttactgaccaccattc	CRISPR spacer
tggtggtgatgtggtcgcaactgaccaccgcgt	Protospacer
.  . ************. **********.. .

41. spacer 1.11|1635311|33|NZ_CP029971|CRT matches to NZ_CP007257 (Rhodococcus erythropolis R138 plasmid pLRE138, complete sequence) position: , mismatch: 11, identity: 0.667

cccctgtgatgtggtcgttactgaccaccattc	CRISPR spacer
tagtggtgatgtggtcgcaactgaccaccgcgt	Protospacer
.  . ************. **********.. .

42. spacer 1.11|1635311|33|NZ_CP029971|CRT matches to NZ_CP042915 (Rhodococcus qingshengii strain RL1 plasmid unnamed2) position: , mismatch: 11, identity: 0.667

cccctgtgatgtggtcgttactgaccaccattc	CRISPR spacer
tggtggtgatgtggtcgcaactgaccaccgcgt	Protospacer
.  . ************. **********.. .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 52967 55 Lactobacillus_phage(50.0%) protease,tail,portal,terminase,tRNA,head,capsid,integrase attL 6659:6674|attR 31437:31452
DBSCAN-SWA_2 60146 : 71486 12 Only_Syngen_Nebraska_virus(20.0%) NA NA
DBSCAN-SWA_3 75314 : 79104 3 Hokovirus(50.0%) tRNA NA
DBSCAN-SWA_4 83657 : 93362 6 Indivirus(40.0%) NA NA
DBSCAN-SWA_5 98134 : 100893 3 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_6 109528 : 111592 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_7 117579 : 124275 4 Cronobacter_phage(50.0%) NA NA
DBSCAN-SWA_8 127493 : 127904 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_9 132212 : 134515 2 Chrysochromulina_ericina_virus(50.0%) NA NA
DBSCAN-SWA_10 138590 : 142205 4 Diachasmimorpha_longicaudata_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_11 153975 : 154707 1 Diadromus_pulchellus_ascovirus(100.0%) NA NA
DBSCAN-SWA_12 158169 : 159471 1 Geobacillus_virus(100.0%) NA NA
DBSCAN-SWA_13 165113 : 169107 3 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_14 173559 : 180364 5 Ralstonia_phage(33.33%) NA NA
DBSCAN-SWA_15 184206 : 185888 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_16 200381 : 275337 55 uncultured_Mediterranean_phage(15.79%) transposase,protease,tRNA NA
DBSCAN-SWA_17 280862 : 282287 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_18 286052 : 286619 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_19 292784 : 293744 1 Only_Syngen_Nebraska_virus(100.0%) NA NA
DBSCAN-SWA_20 297454 : 300975 2 Hokovirus(50.0%) NA NA
DBSCAN-SWA_21 304274 : 305354 1 Pacmanvirus(100.0%) NA NA
DBSCAN-SWA_22 316573 : 319780 2 Lake_Baikal_phage(50.0%) tRNA NA
DBSCAN-SWA_23 334307 : 397437 59 Staphylococcus_phage(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_24 405343 : 461934 50 Bacillus_phage(16.67%) protease,transposase,tRNA NA
DBSCAN-SWA_25 465915 : 466905 1 Staphylococcus_prophage(100.0%) transposase NA
DBSCAN-SWA_26 470920 : 472861 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_27 488174 : 492476 4 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_28 499780 : 503738 3 Gordonia_phage(33.33%) NA NA
DBSCAN-SWA_29 512279 : 518581 8 Bacillus_virus(20.0%) NA NA
DBSCAN-SWA_30 522755 : 534081 9 Clostridium_phage(14.29%) transposase NA
DBSCAN-SWA_31 548032 : 548608 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_32 558797 : 559573 1 Paenibacillus_phage(100.0%) transposase NA
DBSCAN-SWA_33 567506 : 569376 2 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_34 572625 : 575457 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_35 578635 : 580150 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_36 593941 : 597305 4 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_37 602018 : 605069 5 Bodo_saltans_virus(50.0%) NA NA
DBSCAN-SWA_38 609746 : 610643 1 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_39 628624 : 632760 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_40 636897 : 656819 18 Synechococcus_phage(30.0%) transposase NA
DBSCAN-SWA_41 660659 : 661994 1 Ostreococcus_tauri_virus(100.0%) NA NA
DBSCAN-SWA_42 677008 : 678673 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_43 681951 : 682689 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_44 699278 : 703547 4 unidentified_phage(33.33%) transposase NA
DBSCAN-SWA_45 706832 : 707528 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_46 714850 : 726136 11 Bacillus_phage(20.0%) transposase NA
DBSCAN-SWA_47 737314 : 822043 67 Streptococcus_phage(15.0%) transposase NA
DBSCAN-SWA_48 840048 : 861306 21 unidentified_phage(33.33%) transposase,integrase attL 850461:850478|attR 853792:853809
DBSCAN-SWA_49 864598 : 865732 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_50 877921 : 882106 3 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_51 889918 : 891778 3 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_52 895018 : 896488 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_53 901723 : 902248 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_54 931718 : 933964 2 Klosneuvirus(50.0%) transposase NA
DBSCAN-SWA_55 939477 : 939918 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_56 970396 : 971365 1 unidentified_phage(100.0%) transposase NA
DBSCAN-SWA_57 987269 : 991067 5 Planktothrix_phage(66.67%) transposase NA
DBSCAN-SWA_58 1001586 : 1002195 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_59 1007812 : 1009015 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_60 1015908 : 1019288 4 Acanthamoeba_polyphaga_mimivirus(50.0%) NA NA
DBSCAN-SWA_61 1022821 : 1098688 63 Paenibacillus_phage(15.79%) transposase NA
DBSCAN-SWA_62 1109649 : 1112787 1 Klebsiella_phage(100.0%) NA NA
DBSCAN-SWA_63 1116149 : 1118390 3 Paenibacillus_phage(100.0%) transposase NA
DBSCAN-SWA_64 1123111 : 1125241 2 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_65 1138999 : 1139979 2 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_66 1146200 : 1146902 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_67 1150736 : 1156030 6 Lactobacillus_phage(25.0%) transposase NA
DBSCAN-SWA_68 1166046 : 1167135 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_69 1170375 : 1174118 3 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_70 1193756 : 1198064 5 environmental_halophage(50.0%) NA NA
DBSCAN-SWA_71 1203808 : 1208620 4 Lactobacillus_phage(66.67%) NA NA
DBSCAN-SWA_72 1219822 : 1221262 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_73 1250576 : 1255105 4 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_74 1266826 : 1274162 5 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_75 1280354 : 1281095 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_76 1289805 : 1290972 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_77 1313098 : 1314067 1 unidentified_phage(100.0%) transposase NA
DBSCAN-SWA_78 1326477 : 1335908 10 Staphylococcus_phage(60.0%) transposase NA
DBSCAN-SWA_79 1339545 : 1340514 1 unidentified_phage(100.0%) transposase NA
DBSCAN-SWA_80 1344011 : 1354129 9 Staphylococcus_phage(40.0%) NA NA
DBSCAN-SWA_81 1361091 : 1364485 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_82 1376785 : 1377427 1 Golden_Marseillevirus(100.0%) NA NA
DBSCAN-SWA_83 1382703 : 1385949 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_84 1391477 : 1393727 3 Megavirus(50.0%) transposase NA
DBSCAN-SWA_85 1399597 : 1401025 2 Streptomyces_phage(50.0%) NA NA
DBSCAN-SWA_86 1404254 : 1409827 6 Prochlorococcus_phage(33.33%) NA NA
DBSCAN-SWA_87 1424218 : 1425211 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_88 1435003 : 1438524 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_89 1446108 : 1452262 6 Cafeteria_roenbergensis_virus(33.33%) NA NA
DBSCAN-SWA_90 1467185 : 1470808 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_91 1478540 : 1480978 2 Lactococcus_phage(50.0%) protease NA
DBSCAN-SWA_92 1491545 : 1499439 9 Vibrio_phage(33.33%) NA NA
DBSCAN-SWA_93 1505248 : 1511557 8 Anomala_cuprea_entomopoxvirus(25.0%) NA NA
DBSCAN-SWA_94 1515304 : 1521168 4 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_95 1543038 : 1545762 1 Only_Syngen_Nebraska_virus(100.0%) NA NA
DBSCAN-SWA_96 1549747 : 1551657 2 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_97 1559155 : 1563261 4 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_98 1570182 : 1621117 48 unidentified_phage(13.33%) transposase NA
DBSCAN-SWA_99 1624527 : 1625301 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_100 1651688 : 1656335 3 Hokovirus(50.0%) NA NA
DBSCAN-SWA_101 1661996 : 1667791 5 Vaccinia_virus(33.33%) NA NA
DBSCAN-SWA_102 1670994 : 1677751 8 Planktothrix_phage(25.0%) transposase NA
DBSCAN-SWA_103 1690553 : 1692610 2 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_104 1701182 : 1704882 4 Hokovirus(50.0%) NA NA
DBSCAN-SWA_105 1708169 : 1723718 12 Acinetobacter_phage(14.29%) transposase NA
DBSCAN-SWA_106 1738229 : 1739540 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_107 1742939 : 1744103 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_108 1763342 : 1764635 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_109 1777013 : 1782873 3 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_110 1786134 : 1788722 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_111 1814383 : 1833428 20 Bacillus_phage(11.11%) transposase NA
DBSCAN-SWA_112 1844049 : 1854018 12 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_113 1861709 : 1862987 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_114 1867912 : 1873826 4 Pacmanvirus(50.0%) tRNA NA
DBSCAN-SWA_115 1879401 : 1915207 32 Paenibacillus_phage(13.33%) transposase,tRNA NA
DBSCAN-SWA_116 1929125 : 1929734 1 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_117 1935031 : 1946180 15 Bacillus_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_118 1950139 : 1959518 6 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_119 1963672 : 1968802 3 Megavirus(33.33%) NA NA
DBSCAN-SWA_120 1972251 : 1979942 6 Xanthomonas_phage(33.33%) tRNA NA
DBSCAN-SWA_121 1984261 : 1987969 5 Bodo_saltans_virus(50.0%) NA NA
DBSCAN-SWA_122 1994004 : 1997138 2 Helicobacter_phage(50.0%) NA NA
DBSCAN-SWA_123 2000508 : 2007792 4 Agrobacterium_phage(50.0%) NA NA
DBSCAN-SWA_124 2010812 : 2017580 8 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_125 2021979 : 2036936 15 Staphylococcus_phage(22.22%) tRNA NA
DBSCAN-SWA_126 2048882 : 2054813 4 Streptococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_127 2058015 : 2058615 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_128 2065539 : 2066448 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_129 2075071 : 2076118 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_130 2087149 : 2096237 7 Bacillus_phage(25.0%) protease NA
DBSCAN-SWA_131 2105919 : 2106959 2 Indivirus(50.0%) NA NA
DBSCAN-SWA_132 2112816 : 2125906 12 Staphylococcus_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_133 2130613 : 2132813 2 Moumouvirus(50.0%) NA NA
DBSCAN-SWA_134 2136214 : 2136754 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_135 2140593 : 2144123 4 Megavirus(50.0%) tRNA NA
DBSCAN-SWA_136 2155186 : 2155861 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_137 2159460 : 2160510 1 Orpheovirus(100.0%) tRNA NA
DBSCAN-SWA_138 2166029 : 2169630 3 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_139 2173494 : 2191372 17 Bacillus_virus(28.57%) tRNA NA
DBSCAN-SWA_140 2194709 : 2196002 2 Anomala_cuprea_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_141 2204946 : 2206638 1 Orpheovirus(100.0%) tRNA NA
DBSCAN-SWA_142 2224916 : 2230305 5 unidentified_phage(50.0%) protease,transposase NA
DBSCAN-SWA_143 2235615 : 2236269 1 Lactobacillus_virus(100.0%) NA NA
DBSCAN-SWA_144 2244651 : 2252254 5 Staphylococcus_phage(100.0%) transposase,tRNA NA
DBSCAN-SWA_145 2256426 : 2256984 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_146 2261748 : 2262573 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_147 2266661 : 2272693 4 Enterococcus_phage(25.0%) NA NA
DBSCAN-SWA_148 2279411 : 2286320 8 Streptococcus_phage(25.0%) tRNA NA
DBSCAN-SWA_149 2291213 : 2292533 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_150 2297492 : 2311029 11 Streptococcus_phage(22.22%) transposase,protease NA
DBSCAN-SWA_151 2315454 : 2322043 7 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_152 2328636 : 2330673 2 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_153 2336473 : 2341473 4 uncultured_virus(66.67%) NA NA
DBSCAN-SWA_154 2344676 : 2359705 17 Streptococcus_phage(25.0%) NA NA
DBSCAN-SWA_155 2370898 : 2372305 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_156 2376691 : 2379536 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_157 2390515 : 2395675 3 Bacillus_virus(66.67%) NA NA
DBSCAN-SWA_158 2399411 : 2405467 7 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_159 2409961 : 2420185 4 Lactobacillus_phage(66.67%) tail NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP029971.1|WP_054769508.1|267965_268220_+|30S-ribosomal-protein-S20 267965_268220_+ 84 aa aa NA NA NA 200381-275337 yes