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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP033725 Clavibacter michiganensis subsp. michiganensis strain UF1 plasmid pCM1-UF1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP033724 Clavibacter michiganensis subsp. michiganensis strain UF1 chromosome, complete genome 2 crisprs csa3,DEDDh,WYL,cas3 0 3 2 0
NZ_CP033726 Clavibacter michiganensis subsp. michiganensis strain UF1 plasmid pCM2U-F1, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP033724
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP033724_1 2216843-2217106 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP033724_2 2307016-2307194 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP033724_2 2.1|2307039|22|NZ_CP033724|CRISPRCasFinder 2307039-2307060 22 NC_008269 Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence 122336-122357 2 0.909
NZ_CP033724_2 2.1|2307039|22|NZ_CP033724|CRISPRCasFinder 2307039-2307060 22 NC_008269 Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence 387077-387098 2 0.909
NZ_CP033724_2 2.1|2307039|22|NZ_CP033724|CRISPRCasFinder 2307039-2307060 22 NZ_CP022567 Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence 180166-180187 2 0.909
NZ_CP033724_2 2.2|2307084|22|NZ_CP033724|CRISPRCasFinder 2307084-2307105 22 NZ_CP027859 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence 217187-217208 2 0.909
NZ_CP033724_2 2.2|2307084|22|NZ_CP033724|CRISPRCasFinder 2307084-2307105 22 NZ_CP027859 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence 205311-205332 2 0.909
NZ_CP033724_2 2.2|2307084|22|NZ_CP033724|CRISPRCasFinder 2307084-2307105 22 NZ_CP027859 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence 206192-206213 2 0.909
NZ_CP033724_2 2.2|2307084|22|NZ_CP033724|CRISPRCasFinder 2307084-2307105 22 NZ_CP012915 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence 708322-708343 2 0.909
NZ_CP033724_2 2.2|2307084|22|NZ_CP033724|CRISPRCasFinder 2307084-2307105 22 NZ_CP032340 Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence 1424058-1424079 2 0.909
NZ_CP033724_1 1.4|2217047|39|NZ_CP033724|CRT 2217047-2217085 39 NZ_CP029211 Aquabacterium olei strain NBRC 110486 plasmid pTB101, complete sequence 253635-253673 11 0.718

1. spacer 2.1|2307039|22|NZ_CP033724|CRISPRCasFinder matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 2, identity: 0.909

tcgccttcttcgccgtcgactt	CRISPR spacer
tcgccttcttcggcgtcgactg	Protospacer
************ ******** 

2. spacer 2.1|2307039|22|NZ_CP033724|CRISPRCasFinder matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 2, identity: 0.909

tcgccttcttcgccgtcgactt	CRISPR spacer
tcgccttcttcggcgtcgactg	Protospacer
************ ******** 

3. spacer 2.1|2307039|22|NZ_CP033724|CRISPRCasFinder matches to NZ_CP022567 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence) position: , mismatch: 2, identity: 0.909

tcgccttcttcgccgtcgactt	CRISPR spacer
tcgccttcatcgccgtcgactg	Protospacer
******** ************ 

4. spacer 2.2|2307084|22|NZ_CP033724|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 2, identity: 0.909

tcgtcgactccgcgcccgagga	CRISPR spacer
ccgtcgacaccgcgcccgagga	Protospacer
.******* *************

5. spacer 2.2|2307084|22|NZ_CP033724|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 2, identity: 0.909

tcgtcgactccgcgcccgagga	CRISPR spacer
ccgtcgacaccgcgcccgagga	Protospacer
.******* *************

6. spacer 2.2|2307084|22|NZ_CP033724|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 2, identity: 0.909

tcgtcgactccgcgcccgagga	CRISPR spacer
ccgtcgacaccgcgcccgagga	Protospacer
.******* *************

7. spacer 2.2|2307084|22|NZ_CP033724|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 2, identity: 0.909

tcgtcgactccgcgcccgagga	CRISPR spacer
acgtcgactcctcgcccgagga	Protospacer
 ********** **********

8. spacer 2.2|2307084|22|NZ_CP033724|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 2, identity: 0.909

tcgtcgactccgcgcccgagga	CRISPR spacer
acgtcgactcctcgcccgagga	Protospacer
 ********** **********

9. spacer 1.4|2217047|39|NZ_CP033724|CRT matches to NZ_CP029211 (Aquabacterium olei strain NBRC 110486 plasmid pTB101, complete sequence) position: , mismatch: 11, identity: 0.718

atcacgctgcggccgacctgcggctccaccaccgtcctt	CRISPR spacer
aaatcgctgcggccgagctgcggcaccaccacttcagct	Protospacer
*   ************ ******* *******. .  .*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 936300 : 946252 9 Red_sea_bream_iridovirus(12.5%) tRNA,protease NA
DBSCAN-SWA_2 1130809 : 1137707 8 Escherichia_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage