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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP034005 Staphylococcus aureus strain P1D7C1 chromosome, complete genome 9 crisprs cas3,DEDDh,DinG,csa3,RT,WYL 8 3 6 2
NZ_CP034003 Staphylococcus aureus strain P1D7C1 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP034004 Staphylococcus aureus strain P1D7C1 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP034005
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034005_1 420405-420506 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034005_2 815127-815205 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034005_3 820582-820851 Unclear NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034005_4 863846-863927 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034005_5 1654939-1655023 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034005_6 1689369-1689516 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034005_7 2219227-2219307 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034005_8 2231548-2231633 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034005_9 2339594-2339674 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP034005_3 3.1|820618|22|NZ_CP034005|CRT 820618-820639 22 NZ_CP034005.1 773276-773297 0 1.0
NZ_CP034005_3 3.1|820618|22|NZ_CP034005|CRT 820618-820639 22 NZ_CP034005.1 863919-863940 0 1.0
NZ_CP034005_3 3.1|820618|22|NZ_CP034005|CRT 820618-820639 22 NZ_CP034005.1 1427280-1427301 0 1.0
NZ_CP034005_3 3.1|820618|22|NZ_CP034005|CRT 820618-820639 22 NZ_CP034005.1 1655015-1655036 0 1.0
NZ_CP034005_3 3.1|820618|22|NZ_CP034005|CRT 820618-820639 22 NZ_CP034005.1 1985977-1985998 0 1.0
NZ_CP034005_3 3.1|820618|22|NZ_CP034005|CRT 820618-820639 22 NZ_CP034005.1 182233-182254 0 1.0
NZ_CP034005_3 3.1|820618|22|NZ_CP034005|CRT 820618-820639 22 NZ_CP034005.1 182291-182312 0 1.0
NZ_CP034005_3 3.1|820618|22|NZ_CP034005|CRT 820618-820639 22 NZ_CP034005.1 305368-305389 0 1.0
NZ_CP034005_3 3.1|820618|22|NZ_CP034005|CRT 820618-820639 22 NZ_CP034005.1 648779-648800 0 1.0
NZ_CP034005_3 3.1|820618|22|NZ_CP034005|CRT 820618-820639 22 NZ_CP034005.1 1338728-1338749 0 1.0
NZ_CP034005_3 3.1|820618|22|NZ_CP034005|CRT 820618-820639 22 NZ_CP034005.1 1669549-1669570 0 1.0
NZ_CP034005_3 3.3|820735|22|NZ_CP034005|CRT 820735-820756 22 NZ_CP034005.1 773276-773297 0 1.0
NZ_CP034005_3 3.3|820735|22|NZ_CP034005|CRT 820735-820756 22 NZ_CP034005.1 863919-863940 0 1.0
NZ_CP034005_3 3.3|820735|22|NZ_CP034005|CRT 820735-820756 22 NZ_CP034005.1 1427280-1427301 0 1.0
NZ_CP034005_3 3.3|820735|22|NZ_CP034005|CRT 820735-820756 22 NZ_CP034005.1 1655015-1655036 0 1.0
NZ_CP034005_3 3.3|820735|22|NZ_CP034005|CRT 820735-820756 22 NZ_CP034005.1 1985977-1985998 0 1.0
NZ_CP034005_3 3.3|820735|22|NZ_CP034005|CRT 820735-820756 22 NZ_CP034005.1 182233-182254 0 1.0
NZ_CP034005_3 3.3|820735|22|NZ_CP034005|CRT 820735-820756 22 NZ_CP034005.1 182291-182312 0 1.0
NZ_CP034005_3 3.3|820735|22|NZ_CP034005|CRT 820735-820756 22 NZ_CP034005.1 305368-305389 0 1.0
NZ_CP034005_3 3.3|820735|22|NZ_CP034005|CRT 820735-820756 22 NZ_CP034005.1 648779-648800 0 1.0
NZ_CP034005_3 3.3|820735|22|NZ_CP034005|CRT 820735-820756 22 NZ_CP034005.1 1338728-1338749 0 1.0
NZ_CP034005_3 3.3|820735|22|NZ_CP034005|CRT 820735-820756 22 NZ_CP034005.1 1669549-1669570 0 1.0
NZ_CP034005_3 3.1|820618|22|NZ_CP034005|CRT 820618-820639 22 NZ_CP034005.1 934152-934173 1 0.955
NZ_CP034005_3 3.1|820618|22|NZ_CP034005|CRT 820618-820639 22 NZ_CP034005.1 1689276-1689297 1 0.955
NZ_CP034005_3 3.1|820618|22|NZ_CP034005|CRT 820618-820639 22 NZ_CP034005.1 1689509-1689530 1 0.955
NZ_CP034005_3 3.2|820676|23|NZ_CP034005|CRT 820676-820698 23 NZ_CP034005.1 774226-774248 1 0.957
NZ_CP034005_3 3.2|820676|23|NZ_CP034005|CRT 820676-820698 23 NZ_CP034005.1 774448-774470 1 0.957
NZ_CP034005_3 3.2|820676|23|NZ_CP034005|CRT 820676-820698 23 NZ_CP034005.1 1338844-1338866 1 0.957
NZ_CP034005_3 3.2|820676|23|NZ_CP034005|CRT 820676-820698 23 NZ_CP034005.1 1986035-1986057 1 0.957
NZ_CP034005_3 3.2|820676|23|NZ_CP034005|CRT 820676-820698 23 NZ_CP034005.1 2328765-2328787 1 0.957
NZ_CP034005_3 3.3|820735|22|NZ_CP034005|CRT 820735-820756 22 NZ_CP034005.1 934152-934173 1 0.955
NZ_CP034005_3 3.3|820735|22|NZ_CP034005|CRT 820735-820756 22 NZ_CP034005.1 1689276-1689297 1 0.955
NZ_CP034005_3 3.3|820735|22|NZ_CP034005|CRT 820735-820756 22 NZ_CP034005.1 1689509-1689530 1 0.955
NZ_CP034005_3 3.4|820793|23|NZ_CP034005|CRT 820793-820815 23 NZ_CP034005.1 774226-774248 1 0.957
NZ_CP034005_3 3.4|820793|23|NZ_CP034005|CRT 820793-820815 23 NZ_CP034005.1 774448-774470 1 0.957
NZ_CP034005_3 3.4|820793|23|NZ_CP034005|CRT 820793-820815 23 NZ_CP034005.1 1338844-1338866 1 0.957
NZ_CP034005_3 3.4|820793|23|NZ_CP034005|CRT 820793-820815 23 NZ_CP034005.1 1986035-1986057 1 0.957
NZ_CP034005_3 3.4|820793|23|NZ_CP034005|CRT 820793-820815 23 NZ_CP034005.1 2328765-2328787 1 0.957
NZ_CP034005_4 4.1|863870|34|NZ_CP034005|CRISPRCasFinder 863870-863903 34 NZ_CP034005.1 1338824-1338857 1 0.971
NZ_CP034005_5 5.1|1654965|33|NZ_CP034005|CRISPRCasFinder 1654965-1654997 33 NZ_CP034005.1 1338825-1338857 1 0.97
NZ_CP034005_9 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder 2339619-2339649 31 NZ_CP034005.1 827869-827899 1 0.968
NZ_CP034005_9 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder 2339619-2339649 31 NZ_CP034005.1 827925-827955 1 0.968
NZ_CP034005_3 3.2|820676|23|NZ_CP034005|CRT 820676-820698 23 NZ_CP034005.1 1427163-1427185 2 0.913
NZ_CP034005_3 3.2|820676|23|NZ_CP034005|CRT 820676-820698 23 NZ_CP034005.1 2088574-2088596 2 0.913
NZ_CP034005_3 3.2|820676|23|NZ_CP034005|CRT 820676-820698 23 NZ_CP034005.1 2088633-2088655 2 0.913
NZ_CP034005_3 3.4|820793|23|NZ_CP034005|CRT 820793-820815 23 NZ_CP034005.1 1427163-1427185 2 0.913
NZ_CP034005_3 3.4|820793|23|NZ_CP034005|CRT 820793-820815 23 NZ_CP034005.1 2088574-2088596 2 0.913
NZ_CP034005_3 3.4|820793|23|NZ_CP034005|CRT 820793-820815 23 NZ_CP034005.1 2088633-2088655 2 0.913
NZ_CP034005_6 6.2|1689476|22|NZ_CP034005|PILER-CR 1689476-1689497 22 NZ_CP034005.1 2088462-2088483 2 0.909
NZ_CP034005_6 6.2|1689476|22|NZ_CP034005|PILER-CR 1689476-1689497 22 NZ_CP034005.1 2088579-2088600 2 0.909
NZ_CP034005_6 6.2|1689476|22|NZ_CP034005|PILER-CR 1689476-1689497 22 NZ_CP034005.1 2088638-2088659 2 0.909
NZ_CP034005_6 6.2|1689476|22|NZ_CP034005|PILER-CR 1689476-1689497 22 NZ_CP034005.1 1127262-1127283 2 0.909
NZ_CP034005_9 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder 2339619-2339649 31 NZ_CP034005.1 83391-83421 2 0.935
NZ_CP034005_9 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder 2339619-2339649 31 NZ_CP034005.1 827981-828011 2 0.935
NZ_CP034005_9 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder 2339619-2339649 31 NZ_CP034005.1 864182-864212 2 0.935
NZ_CP034005_9 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder 2339619-2339649 31 NZ_CP034005.1 1030150-1030180 2 0.935
NZ_CP034005_9 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder 2339619-2339649 31 NZ_CP034005.1 1427216-1427246 2 0.935
NZ_CP034005_9 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder 2339619-2339649 31 NZ_CP034005.1 1427332-1427362 2 0.935
NZ_CP034005_9 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder 2339619-2339649 31 NZ_CP034005.1 1984629-1984659 2 0.935
NZ_CP034005_9 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder 2339619-2339649 31 NZ_CP034005.1 2328818-2328848 2 0.935
NZ_CP034005_9 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder 2339619-2339649 31 NZ_CP034005.1 2504232-2504262 2 0.935
NZ_CP034005_9 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder 2339619-2339649 31 NZ_CP034005.1 381667-381697 2 0.935
NZ_CP034005_9 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder 2339619-2339649 31 NZ_CP034005.1 648834-648864 2 0.935
NZ_CP034005_9 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder 2339619-2339649 31 NZ_CP034005.1 1132685-1132715 2 0.935
NZ_CP034005_9 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder 2339619-2339649 31 NZ_CP034005.1 1338783-1338813 2 0.935
NZ_CP034005_9 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder 2339619-2339649 31 NZ_CP034005.1 1669603-1669633 2 0.935

1. spacer 3.1|820618|22|NZ_CP034005|CRT matches to position: 773276-773297, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

2. spacer 3.1|820618|22|NZ_CP034005|CRT matches to position: 863919-863940, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

3. spacer 3.1|820618|22|NZ_CP034005|CRT matches to position: 1427280-1427301, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

4. spacer 3.1|820618|22|NZ_CP034005|CRT matches to position: 1655015-1655036, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

5. spacer 3.1|820618|22|NZ_CP034005|CRT matches to position: 1985977-1985998, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

6. spacer 3.1|820618|22|NZ_CP034005|CRT matches to position: 182233-182254, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

7. spacer 3.1|820618|22|NZ_CP034005|CRT matches to position: 182291-182312, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

8. spacer 3.1|820618|22|NZ_CP034005|CRT matches to position: 305368-305389, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

9. spacer 3.1|820618|22|NZ_CP034005|CRT matches to position: 648779-648800, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

10. spacer 3.1|820618|22|NZ_CP034005|CRT matches to position: 1338728-1338749, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

11. spacer 3.1|820618|22|NZ_CP034005|CRT matches to position: 1669549-1669570, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

12. spacer 3.3|820735|22|NZ_CP034005|CRT matches to position: 773276-773297, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

13. spacer 3.3|820735|22|NZ_CP034005|CRT matches to position: 863919-863940, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

14. spacer 3.3|820735|22|NZ_CP034005|CRT matches to position: 1427280-1427301, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

15. spacer 3.3|820735|22|NZ_CP034005|CRT matches to position: 1655015-1655036, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

16. spacer 3.3|820735|22|NZ_CP034005|CRT matches to position: 1985977-1985998, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

17. spacer 3.3|820735|22|NZ_CP034005|CRT matches to position: 182233-182254, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

18. spacer 3.3|820735|22|NZ_CP034005|CRT matches to position: 182291-182312, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

19. spacer 3.3|820735|22|NZ_CP034005|CRT matches to position: 305368-305389, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

20. spacer 3.3|820735|22|NZ_CP034005|CRT matches to position: 648779-648800, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

21. spacer 3.3|820735|22|NZ_CP034005|CRT matches to position: 1338728-1338749, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

22. spacer 3.3|820735|22|NZ_CP034005|CRT matches to position: 1669549-1669570, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

23. spacer 3.1|820618|22|NZ_CP034005|CRT matches to position: 934152-934173, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

24. spacer 3.1|820618|22|NZ_CP034005|CRT matches to position: 1689276-1689297, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

25. spacer 3.1|820618|22|NZ_CP034005|CRT matches to position: 1689509-1689530, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

26. spacer 3.2|820676|23|NZ_CP034005|CRT matches to position: 774226-774248, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

27. spacer 3.2|820676|23|NZ_CP034005|CRT matches to position: 774448-774470, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

28. spacer 3.2|820676|23|NZ_CP034005|CRT matches to position: 1338844-1338866, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

29. spacer 3.2|820676|23|NZ_CP034005|CRT matches to position: 1986035-1986057, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

30. spacer 3.2|820676|23|NZ_CP034005|CRT matches to position: 2328765-2328787, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

31. spacer 3.3|820735|22|NZ_CP034005|CRT matches to position: 934152-934173, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

32. spacer 3.3|820735|22|NZ_CP034005|CRT matches to position: 1689276-1689297, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

33. spacer 3.3|820735|22|NZ_CP034005|CRT matches to position: 1689509-1689530, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

34. spacer 3.4|820793|23|NZ_CP034005|CRT matches to position: 774226-774248, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

35. spacer 3.4|820793|23|NZ_CP034005|CRT matches to position: 774448-774470, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

36. spacer 3.4|820793|23|NZ_CP034005|CRT matches to position: 1338844-1338866, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

37. spacer 3.4|820793|23|NZ_CP034005|CRT matches to position: 1986035-1986057, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

38. spacer 3.4|820793|23|NZ_CP034005|CRT matches to position: 2328765-2328787, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

39. spacer 4.1|863870|34|NZ_CP034005|CRISPRCasFinder matches to position: 1338824-1338857, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

40. spacer 5.1|1654965|33|NZ_CP034005|CRISPRCasFinder matches to position: 1338825-1338857, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

41. spacer 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder matches to position: 827869-827899, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

42. spacer 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder matches to position: 827925-827955, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

43. spacer 3.2|820676|23|NZ_CP034005|CRT matches to position: 1427163-1427185, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

44. spacer 3.2|820676|23|NZ_CP034005|CRT matches to position: 2088574-2088596, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

45. spacer 3.2|820676|23|NZ_CP034005|CRT matches to position: 2088633-2088655, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

46. spacer 3.4|820793|23|NZ_CP034005|CRT matches to position: 1427163-1427185, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

47. spacer 3.4|820793|23|NZ_CP034005|CRT matches to position: 2088574-2088596, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

48. spacer 3.4|820793|23|NZ_CP034005|CRT matches to position: 2088633-2088655, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

49. spacer 6.2|1689476|22|NZ_CP034005|PILER-CR matches to position: 2088462-2088483, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

50. spacer 6.2|1689476|22|NZ_CP034005|PILER-CR matches to position: 2088579-2088600, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

51. spacer 6.2|1689476|22|NZ_CP034005|PILER-CR matches to position: 2088638-2088659, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

52. spacer 6.2|1689476|22|NZ_CP034005|PILER-CR matches to position: 1127262-1127283, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattggtgatccaatttct	Protospacer
********* * **********

53. spacer 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder matches to position: 83391-83421, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

54. spacer 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder matches to position: 827981-828011, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

55. spacer 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder matches to position: 864182-864212, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

56. spacer 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder matches to position: 1030150-1030180, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

57. spacer 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder matches to position: 1427216-1427246, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

58. spacer 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder matches to position: 1427332-1427362, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

59. spacer 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder matches to position: 1984629-1984659, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

60. spacer 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder matches to position: 2328818-2328848, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

61. spacer 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder matches to position: 2504232-2504262, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

62. spacer 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder matches to position: 381667-381697, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

63. spacer 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder matches to position: 648834-648864, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

64. spacer 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder matches to position: 1132685-1132715, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

65. spacer 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder matches to position: 1338783-1338813, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

66. spacer 9.1|2339619|31|NZ_CP034005|CRISPRCasFinder matches to position: 1669603-1669633, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP034005_3 3.2|820676|23|NZ_CP034005|CRT 820676-820698 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP034005_3 3.2|820676|23|NZ_CP034005|CRT 820676-820698 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP034005_3 3.4|820793|23|NZ_CP034005|CRT 820793-820815 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP034005_3 3.4|820793|23|NZ_CP034005|CRT 820793-820815 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP034005_8 8.1|2231574|34|NZ_CP034005|CRISPRCasFinder 2231574-2231607 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP034005_8 8.1|2231574|34|NZ_CP034005|CRISPRCasFinder 2231574-2231607 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 3.2|820676|23|NZ_CP034005|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

2. spacer 3.2|820676|23|NZ_CP034005|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

3. spacer 3.4|820793|23|NZ_CP034005|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

4. spacer 3.4|820793|23|NZ_CP034005|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

5. spacer 8.1|2231574|34|NZ_CP034005|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

6. spacer 8.1|2231574|34|NZ_CP034005|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 776095 : 786732 9 uncultured_Caudovirales_phage(71.43%) NA NA
DBSCAN-SWA_2 1031660 : 1040133 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_3 1481611 : 1568131 106 Staphylococcus_phage(80.77%) portal,tRNA,holin,tail,integrase,protease,head,capsid,terminase attL 1520636:1520653|attR 1566648:1566665
DBSCAN-SWA_4 1704608 : 1713651 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_5 1843795 : 1905127 57 Staphylococcus_phage(95.56%) tRNA,protease NA
DBSCAN-SWA_6 1998874 : 2093516 112 Staphylococcus_phage(86.67%) portal,tRNA,holin,tail,integrase,protease,head,capsid,terminase attL 1995311:1995335|attR 2095802:2095826
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP034005.1|WP_000681968.1|2034633_2034810_-|hypothetical-protein 2034633_2034810_- 58 aa aa NA NA NA 1998874-2093516 yes
NZ_CP034005.1|WP_000990056.1|2035052_2035151_-|hypothetical-protein 2035052_2035151_- 32 aa aa NA NA NA 1998874-2093516 yes