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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP034008 Staphylococcus aureus strain P1D5C2 chromosome, complete genome 9 crisprs cas3,DEDDh,DinG,csa3,RT,WYL 8 3 6 2
NZ_CP034007 Staphylococcus aureus strain P1D5C2 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP034006 Staphylococcus aureus strain P1D5C2 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP034008
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034008_1 420405-420506 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034008_2 815127-815205 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034008_3 820582-820851 Unclear NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034008_4 863846-863927 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034008_5 1654940-1655024 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034008_6 1689370-1689517 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034008_7 2219228-2219308 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034008_8 2231549-2231634 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034008_9 2339595-2339675 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP034008_3 3.1|820618|22|NZ_CP034008|CRT 820618-820639 22 NZ_CP034008.1 773276-773297 0 1.0
NZ_CP034008_3 3.1|820618|22|NZ_CP034008|CRT 820618-820639 22 NZ_CP034008.1 863919-863940 0 1.0
NZ_CP034008_3 3.1|820618|22|NZ_CP034008|CRT 820618-820639 22 NZ_CP034008.1 1427281-1427302 0 1.0
NZ_CP034008_3 3.1|820618|22|NZ_CP034008|CRT 820618-820639 22 NZ_CP034008.1 1655016-1655037 0 1.0
NZ_CP034008_3 3.1|820618|22|NZ_CP034008|CRT 820618-820639 22 NZ_CP034008.1 1985978-1985999 0 1.0
NZ_CP034008_3 3.1|820618|22|NZ_CP034008|CRT 820618-820639 22 NZ_CP034008.1 182233-182254 0 1.0
NZ_CP034008_3 3.1|820618|22|NZ_CP034008|CRT 820618-820639 22 NZ_CP034008.1 182291-182312 0 1.0
NZ_CP034008_3 3.1|820618|22|NZ_CP034008|CRT 820618-820639 22 NZ_CP034008.1 305368-305389 0 1.0
NZ_CP034008_3 3.1|820618|22|NZ_CP034008|CRT 820618-820639 22 NZ_CP034008.1 648779-648800 0 1.0
NZ_CP034008_3 3.1|820618|22|NZ_CP034008|CRT 820618-820639 22 NZ_CP034008.1 1338729-1338750 0 1.0
NZ_CP034008_3 3.1|820618|22|NZ_CP034008|CRT 820618-820639 22 NZ_CP034008.1 1669550-1669571 0 1.0
NZ_CP034008_3 3.3|820735|22|NZ_CP034008|CRT 820735-820756 22 NZ_CP034008.1 773276-773297 0 1.0
NZ_CP034008_3 3.3|820735|22|NZ_CP034008|CRT 820735-820756 22 NZ_CP034008.1 863919-863940 0 1.0
NZ_CP034008_3 3.3|820735|22|NZ_CP034008|CRT 820735-820756 22 NZ_CP034008.1 1427281-1427302 0 1.0
NZ_CP034008_3 3.3|820735|22|NZ_CP034008|CRT 820735-820756 22 NZ_CP034008.1 1655016-1655037 0 1.0
NZ_CP034008_3 3.3|820735|22|NZ_CP034008|CRT 820735-820756 22 NZ_CP034008.1 1985978-1985999 0 1.0
NZ_CP034008_3 3.3|820735|22|NZ_CP034008|CRT 820735-820756 22 NZ_CP034008.1 182233-182254 0 1.0
NZ_CP034008_3 3.3|820735|22|NZ_CP034008|CRT 820735-820756 22 NZ_CP034008.1 182291-182312 0 1.0
NZ_CP034008_3 3.3|820735|22|NZ_CP034008|CRT 820735-820756 22 NZ_CP034008.1 305368-305389 0 1.0
NZ_CP034008_3 3.3|820735|22|NZ_CP034008|CRT 820735-820756 22 NZ_CP034008.1 648779-648800 0 1.0
NZ_CP034008_3 3.3|820735|22|NZ_CP034008|CRT 820735-820756 22 NZ_CP034008.1 1338729-1338750 0 1.0
NZ_CP034008_3 3.3|820735|22|NZ_CP034008|CRT 820735-820756 22 NZ_CP034008.1 1669550-1669571 0 1.0
NZ_CP034008_3 3.1|820618|22|NZ_CP034008|CRT 820618-820639 22 NZ_CP034008.1 934152-934173 1 0.955
NZ_CP034008_3 3.1|820618|22|NZ_CP034008|CRT 820618-820639 22 NZ_CP034008.1 1689277-1689298 1 0.955
NZ_CP034008_3 3.1|820618|22|NZ_CP034008|CRT 820618-820639 22 NZ_CP034008.1 1689510-1689531 1 0.955
NZ_CP034008_3 3.2|820676|23|NZ_CP034008|CRT 820676-820698 23 NZ_CP034008.1 774226-774248 1 0.957
NZ_CP034008_3 3.2|820676|23|NZ_CP034008|CRT 820676-820698 23 NZ_CP034008.1 774448-774470 1 0.957
NZ_CP034008_3 3.2|820676|23|NZ_CP034008|CRT 820676-820698 23 NZ_CP034008.1 1338845-1338867 1 0.957
NZ_CP034008_3 3.2|820676|23|NZ_CP034008|CRT 820676-820698 23 NZ_CP034008.1 1986036-1986058 1 0.957
NZ_CP034008_3 3.2|820676|23|NZ_CP034008|CRT 820676-820698 23 NZ_CP034008.1 2328766-2328788 1 0.957
NZ_CP034008_3 3.3|820735|22|NZ_CP034008|CRT 820735-820756 22 NZ_CP034008.1 934152-934173 1 0.955
NZ_CP034008_3 3.3|820735|22|NZ_CP034008|CRT 820735-820756 22 NZ_CP034008.1 1689277-1689298 1 0.955
NZ_CP034008_3 3.3|820735|22|NZ_CP034008|CRT 820735-820756 22 NZ_CP034008.1 1689510-1689531 1 0.955
NZ_CP034008_3 3.4|820793|23|NZ_CP034008|CRT 820793-820815 23 NZ_CP034008.1 774226-774248 1 0.957
NZ_CP034008_3 3.4|820793|23|NZ_CP034008|CRT 820793-820815 23 NZ_CP034008.1 774448-774470 1 0.957
NZ_CP034008_3 3.4|820793|23|NZ_CP034008|CRT 820793-820815 23 NZ_CP034008.1 1338845-1338867 1 0.957
NZ_CP034008_3 3.4|820793|23|NZ_CP034008|CRT 820793-820815 23 NZ_CP034008.1 1986036-1986058 1 0.957
NZ_CP034008_3 3.4|820793|23|NZ_CP034008|CRT 820793-820815 23 NZ_CP034008.1 2328766-2328788 1 0.957
NZ_CP034008_4 4.1|863870|34|NZ_CP034008|CRISPRCasFinder 863870-863903 34 NZ_CP034008.1 1338825-1338858 1 0.971
NZ_CP034008_5 5.1|1654966|33|NZ_CP034008|CRISPRCasFinder 1654966-1654998 33 NZ_CP034008.1 1338826-1338858 1 0.97
NZ_CP034008_9 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder 2339620-2339650 31 NZ_CP034008.1 827869-827899 1 0.968
NZ_CP034008_9 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder 2339620-2339650 31 NZ_CP034008.1 827925-827955 1 0.968
NZ_CP034008_3 3.2|820676|23|NZ_CP034008|CRT 820676-820698 23 NZ_CP034008.1 1427164-1427186 2 0.913
NZ_CP034008_3 3.2|820676|23|NZ_CP034008|CRT 820676-820698 23 NZ_CP034008.1 2088575-2088597 2 0.913
NZ_CP034008_3 3.2|820676|23|NZ_CP034008|CRT 820676-820698 23 NZ_CP034008.1 2088634-2088656 2 0.913
NZ_CP034008_3 3.4|820793|23|NZ_CP034008|CRT 820793-820815 23 NZ_CP034008.1 1427164-1427186 2 0.913
NZ_CP034008_3 3.4|820793|23|NZ_CP034008|CRT 820793-820815 23 NZ_CP034008.1 2088575-2088597 2 0.913
NZ_CP034008_3 3.4|820793|23|NZ_CP034008|CRT 820793-820815 23 NZ_CP034008.1 2088634-2088656 2 0.913
NZ_CP034008_6 6.2|1689477|22|NZ_CP034008|PILER-CR 1689477-1689498 22 NZ_CP034008.1 2088463-2088484 2 0.909
NZ_CP034008_6 6.2|1689477|22|NZ_CP034008|PILER-CR 1689477-1689498 22 NZ_CP034008.1 2088580-2088601 2 0.909
NZ_CP034008_6 6.2|1689477|22|NZ_CP034008|PILER-CR 1689477-1689498 22 NZ_CP034008.1 2088639-2088660 2 0.909
NZ_CP034008_6 6.2|1689477|22|NZ_CP034008|PILER-CR 1689477-1689498 22 NZ_CP034008.1 1127262-1127283 2 0.909
NZ_CP034008_9 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder 2339620-2339650 31 NZ_CP034008.1 83391-83421 2 0.935
NZ_CP034008_9 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder 2339620-2339650 31 NZ_CP034008.1 827981-828011 2 0.935
NZ_CP034008_9 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder 2339620-2339650 31 NZ_CP034008.1 864182-864212 2 0.935
NZ_CP034008_9 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder 2339620-2339650 31 NZ_CP034008.1 1030150-1030180 2 0.935
NZ_CP034008_9 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder 2339620-2339650 31 NZ_CP034008.1 1427217-1427247 2 0.935
NZ_CP034008_9 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder 2339620-2339650 31 NZ_CP034008.1 1427333-1427363 2 0.935
NZ_CP034008_9 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder 2339620-2339650 31 NZ_CP034008.1 1984630-1984660 2 0.935
NZ_CP034008_9 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder 2339620-2339650 31 NZ_CP034008.1 2328819-2328849 2 0.935
NZ_CP034008_9 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder 2339620-2339650 31 NZ_CP034008.1 2504233-2504263 2 0.935
NZ_CP034008_9 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder 2339620-2339650 31 NZ_CP034008.1 381667-381697 2 0.935
NZ_CP034008_9 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder 2339620-2339650 31 NZ_CP034008.1 648834-648864 2 0.935
NZ_CP034008_9 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder 2339620-2339650 31 NZ_CP034008.1 1132685-1132715 2 0.935
NZ_CP034008_9 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder 2339620-2339650 31 NZ_CP034008.1 1338784-1338814 2 0.935
NZ_CP034008_9 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder 2339620-2339650 31 NZ_CP034008.1 1669604-1669634 2 0.935

1. spacer 3.1|820618|22|NZ_CP034008|CRT matches to position: 773276-773297, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

2. spacer 3.1|820618|22|NZ_CP034008|CRT matches to position: 863919-863940, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

3. spacer 3.1|820618|22|NZ_CP034008|CRT matches to position: 1427281-1427302, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

4. spacer 3.1|820618|22|NZ_CP034008|CRT matches to position: 1655016-1655037, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

5. spacer 3.1|820618|22|NZ_CP034008|CRT matches to position: 1985978-1985999, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

6. spacer 3.1|820618|22|NZ_CP034008|CRT matches to position: 182233-182254, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

7. spacer 3.1|820618|22|NZ_CP034008|CRT matches to position: 182291-182312, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

8. spacer 3.1|820618|22|NZ_CP034008|CRT matches to position: 305368-305389, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

9. spacer 3.1|820618|22|NZ_CP034008|CRT matches to position: 648779-648800, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

10. spacer 3.1|820618|22|NZ_CP034008|CRT matches to position: 1338729-1338750, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

11. spacer 3.1|820618|22|NZ_CP034008|CRT matches to position: 1669550-1669571, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

12. spacer 3.3|820735|22|NZ_CP034008|CRT matches to position: 773276-773297, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

13. spacer 3.3|820735|22|NZ_CP034008|CRT matches to position: 863919-863940, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

14. spacer 3.3|820735|22|NZ_CP034008|CRT matches to position: 1427281-1427302, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

15. spacer 3.3|820735|22|NZ_CP034008|CRT matches to position: 1655016-1655037, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

16. spacer 3.3|820735|22|NZ_CP034008|CRT matches to position: 1985978-1985999, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

17. spacer 3.3|820735|22|NZ_CP034008|CRT matches to position: 182233-182254, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

18. spacer 3.3|820735|22|NZ_CP034008|CRT matches to position: 182291-182312, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

19. spacer 3.3|820735|22|NZ_CP034008|CRT matches to position: 305368-305389, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

20. spacer 3.3|820735|22|NZ_CP034008|CRT matches to position: 648779-648800, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

21. spacer 3.3|820735|22|NZ_CP034008|CRT matches to position: 1338729-1338750, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

22. spacer 3.3|820735|22|NZ_CP034008|CRT matches to position: 1669550-1669571, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

23. spacer 3.1|820618|22|NZ_CP034008|CRT matches to position: 934152-934173, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

24. spacer 3.1|820618|22|NZ_CP034008|CRT matches to position: 1689277-1689298, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

25. spacer 3.1|820618|22|NZ_CP034008|CRT matches to position: 1689510-1689531, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

26. spacer 3.2|820676|23|NZ_CP034008|CRT matches to position: 774226-774248, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

27. spacer 3.2|820676|23|NZ_CP034008|CRT matches to position: 774448-774470, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

28. spacer 3.2|820676|23|NZ_CP034008|CRT matches to position: 1338845-1338867, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

29. spacer 3.2|820676|23|NZ_CP034008|CRT matches to position: 1986036-1986058, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

30. spacer 3.2|820676|23|NZ_CP034008|CRT matches to position: 2328766-2328788, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

31. spacer 3.3|820735|22|NZ_CP034008|CRT matches to position: 934152-934173, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

32. spacer 3.3|820735|22|NZ_CP034008|CRT matches to position: 1689277-1689298, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

33. spacer 3.3|820735|22|NZ_CP034008|CRT matches to position: 1689510-1689531, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

34. spacer 3.4|820793|23|NZ_CP034008|CRT matches to position: 774226-774248, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

35. spacer 3.4|820793|23|NZ_CP034008|CRT matches to position: 774448-774470, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

36. spacer 3.4|820793|23|NZ_CP034008|CRT matches to position: 1338845-1338867, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

37. spacer 3.4|820793|23|NZ_CP034008|CRT matches to position: 1986036-1986058, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

38. spacer 3.4|820793|23|NZ_CP034008|CRT matches to position: 2328766-2328788, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

39. spacer 4.1|863870|34|NZ_CP034008|CRISPRCasFinder matches to position: 1338825-1338858, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

40. spacer 5.1|1654966|33|NZ_CP034008|CRISPRCasFinder matches to position: 1338826-1338858, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

41. spacer 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder matches to position: 827869-827899, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

42. spacer 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder matches to position: 827925-827955, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

43. spacer 3.2|820676|23|NZ_CP034008|CRT matches to position: 1427164-1427186, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

44. spacer 3.2|820676|23|NZ_CP034008|CRT matches to position: 2088575-2088597, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

45. spacer 3.2|820676|23|NZ_CP034008|CRT matches to position: 2088634-2088656, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

46. spacer 3.4|820793|23|NZ_CP034008|CRT matches to position: 1427164-1427186, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

47. spacer 3.4|820793|23|NZ_CP034008|CRT matches to position: 2088575-2088597, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

48. spacer 3.4|820793|23|NZ_CP034008|CRT matches to position: 2088634-2088656, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

49. spacer 6.2|1689477|22|NZ_CP034008|PILER-CR matches to position: 2088463-2088484, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

50. spacer 6.2|1689477|22|NZ_CP034008|PILER-CR matches to position: 2088580-2088601, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

51. spacer 6.2|1689477|22|NZ_CP034008|PILER-CR matches to position: 2088639-2088660, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

52. spacer 6.2|1689477|22|NZ_CP034008|PILER-CR matches to position: 1127262-1127283, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattggtgatccaatttct	Protospacer
********* * **********

53. spacer 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder matches to position: 83391-83421, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

54. spacer 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder matches to position: 827981-828011, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

55. spacer 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder matches to position: 864182-864212, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

56. spacer 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder matches to position: 1030150-1030180, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

57. spacer 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder matches to position: 1427217-1427247, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

58. spacer 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder matches to position: 1427333-1427363, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

59. spacer 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder matches to position: 1984630-1984660, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

60. spacer 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder matches to position: 2328819-2328849, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

61. spacer 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder matches to position: 2504233-2504263, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

62. spacer 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder matches to position: 381667-381697, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

63. spacer 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder matches to position: 648834-648864, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

64. spacer 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder matches to position: 1132685-1132715, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

65. spacer 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder matches to position: 1338784-1338814, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

66. spacer 9.1|2339620|31|NZ_CP034008|CRISPRCasFinder matches to position: 1669604-1669634, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP034008_3 3.2|820676|23|NZ_CP034008|CRT 820676-820698 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP034008_3 3.2|820676|23|NZ_CP034008|CRT 820676-820698 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP034008_3 3.4|820793|23|NZ_CP034008|CRT 820793-820815 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP034008_3 3.4|820793|23|NZ_CP034008|CRT 820793-820815 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP034008_8 8.1|2231575|34|NZ_CP034008|CRISPRCasFinder 2231575-2231608 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP034008_8 8.1|2231575|34|NZ_CP034008|CRISPRCasFinder 2231575-2231608 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 3.2|820676|23|NZ_CP034008|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

2. spacer 3.2|820676|23|NZ_CP034008|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

3. spacer 3.4|820793|23|NZ_CP034008|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

4. spacer 3.4|820793|23|NZ_CP034008|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

5. spacer 8.1|2231575|34|NZ_CP034008|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

6. spacer 8.1|2231575|34|NZ_CP034008|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 776095 : 786732 9 uncultured_Caudovirales_phage(71.43%) NA NA
DBSCAN-SWA_2 1031660 : 1040133 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_3 1481612 : 1568132 106 Staphylococcus_phage(80.77%) protease,portal,terminase,holin,head,tRNA,integrase,tail,capsid attL 1520637:1520654|attR 1566649:1566666
DBSCAN-SWA_4 1704609 : 1713652 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_5 1843796 : 1905128 57 Staphylococcus_phage(95.56%) protease,tRNA NA
DBSCAN-SWA_6 1998875 : 2093517 112 Staphylococcus_phage(86.67%) protease,portal,terminase,holin,head,tRNA,integrase,tail,capsid attL 1995312:1995336|attR 2095803:2095827
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP034008.1|WP_000681968.1|2034634_2034811_-|hypothetical-protein 2034634_2034811_- 58 aa aa NA NA NA 1998875-2093517 yes
NZ_CP034008.1|WP_000990056.1|2035053_2035152_-|hypothetical-protein 2035053_2035152_- 32 aa aa NA NA NA 1998875-2093517 yes