CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP046569	Dietzia sp. DQ12-45-1b plasmid pII, complete sequence	0 crisprs	RT,DEDDh	0	0
NZ_CP046568	Dietzia sp. DQ12-45-1b plasmid pI, complete sequence	0 crisprs	WYL,PD-DExK	0	0
NZ_CP046567	Dietzia sp. DQ12-45-1b chromosome, complete genome	3 crisprs	DEDDh,cas3,DinG,csa3,WYL,cas4,RT	3	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046567_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046567_1

727842-728245

Orphan

Consensus_repeat	Method
TCGGNNGAGNNGAANTCGGCCGAGCCGCCGAGCAGGTC	CRT

5 spacers

The CRISPR arrays of NZ_CP046567_1

>merge|NZ_CP046567|1|727842-728245|CRT
TCGGAGGAGGTGAAGGTTGCCGAGCCTCCGAGCAGGTCGGTGGACAGCGGTGCCATGCCGAGCGAGCCGACGTCGGTCGAGCCGAACTCCGCCGAGCCGAACTCGGCCGAGCCGCCGAGCAGGTCGGTGGACAGCGGCGCCATCCCGGCGGAACCGACCTCGGTGGAGCCGAACTCGGCCGAGCCGCCGAGCAGGTCGGTGGACAGTGGCGCCATCCCGGCGGAACCGACCTCGGTGGAGCCGAACTCGGCCGACCCGCCGAGCAGGTCCAGCTGGGTGGACAGCGGAGCCAGGTCGGAGGAGGTGAAGTCGGCCGAGCCGCCGAGCAGGTCGGTGGACAGCGGTGCCATGCCGAGCGAGCCGATGTCGGTCGAGCCGAACTCGGCCGAGCCGCCGAGCAGGTC

>NZ_CP046567|1|1|727842-728245|CRT
TCGGAGGAGGTGAAGGTTGCCGAGCCTCCGAGCAGGTC	GGTGGACAGCGGTGCCATGCCGAGCGAGCCGACGTCGGTCGAGCCGAAC
TCCGCCGAGCCGAACTCGGCCGAGCCGCCGAGCAGGTC	GGTGGACAGCGGCGCCATCCCGGCGGAACCGACC
TCGGTGGAGCCGAACTCGGCCGAGCCGCCGAGCAGGTC	GGTGGACAGTGGCGCCATCCCGGCGGAACCGACC
TCGGTGGAGCCGAACTCGGCCGACCCGCCGAGCAGGTC	CAGCTGGGTGGACAGCGGAGCCAGG
TCGGAGGAGGTGAAGTCGGCCGAGCCGCCGAGCAGGTC	GGTGGACAGCGGTGCCATGCCGAGCGAGCCGATG
TCGGTCGAGCCGAACTCGGCCGAGCCGCCGAGCAGGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046567.1\|WP_107755757.1\|731470_732715_+\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP046567.1\|WP_095718838.1\|720562_721183_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046567.1\|WP_107755753.1\|725027_725801_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236116
NZ_CP046567.1\|WP_107757976.1\|732746_733757_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP046567.1\|WP_107755748.1\|719306_720476_+\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|181123
NZ_CP046567.1\|WP_107755761.1\|736689_737874_-\|thiolase-domain-containing-protein	unknown	unknown	gnl\|CDD\|181378
NZ_CP046567.1\|WP_107755756.1\|730132_731299_-\|steroid-3-ketoacyl-CoA-thiolase	unknown	unknown	gnl\|CDD\|181145
NZ_CP046567.1\|WP_017835350.1\|737870_738932_-\|lipid-transfer-protein	unknown	unknown	gnl\|CDD\|181173
NZ_CP046567.1\|WP_107755760.1\|736174_736693_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238404
NZ_CP046567.1\|WP_107755747.1\|717790_718594_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046567.1\|WP_017835369.1\|718694_719276_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP046567.1\|WP_017835358.1\|729543_730131_-\|GNAT-family-N-acetyltransferase	unknown	unknown	unknown
NZ_CP046567.1\|WP_107755750.1\|722432_723218_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|224968
NZ_CP046567.1\|WP_107755759.1\|735267_736173_-\|TIGR03619-family-F420-dependent-LLM-class-oxidoreductase	unknown	unknown	gnl\|CDD\|274680
NZ_CP046567.1\|WP_107755752.1\|724152_724947_-\|enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|181174
NZ_CP046567.1\|WP_107755749.1\|721353_722436_-\|2-nitropropane-dioxygenase	unknown	unknown	gnl\|CDD\|367316
NZ_CP046567.1\|WP_095718843.1\|725830_726748_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236099
NZ_CP046567.1\|WP_107755755.1\|729043_729526_-\|nitroreductase-family-deazaflavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|281995
NZ_CP046567.1\|WP_156607092.1\|733981_734821_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238509
NZ_CP046567.1\|WP_107755751.1\|723217_724156_-\|CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|224702

Protein	Function_ID	Function_description	E-value
NZ_CP046567.1\|WP_107755761.1\|736689_737874_-\|thiolase-domain-containing-protein	gnl\|CDD\|181378	PRK08313, PRK08313, thiolase domain-containing protein.	0
NZ_CP046567.1\|WP_107755759.1\|735267_736173_-\|TIGR03619-family-F420-dependent-LLM-class-oxidoreductase	gnl\|CDD\|274680	TIGR03619, F420_Rv2161c, probable F420-dependent oxidoreductase, Rv2161c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a domain found in a distinctive subset of bacterial luciferase homologs, found only in F420-biosynthesizing members of the Actinobacteria. [Unknown function, Enzymes of unknown specificity].	1.6417e-53
NZ_CP046567.1\|WP_107755753.1\|725027_725801_+\|SDR-family-oxidoreductase	gnl\|CDD\|236116	PRK07856, PRK07856, SDR family oxidoreductase.	1.62123e-132
NZ_CP046567.1\|WP_107757976.1\|732746_733757_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	7.39981e-19
NZ_CP046567.1\|WP_107755748.1\|719306_720476_+\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|181123	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase.	0
NZ_CP046567.1\|WP_017835350.1\|737870_738932_-\|lipid-transfer-protein	gnl\|CDD\|181173	PRK07937, PRK07937, lipid-transfer protein; Provisional.	0
NZ_CP046567.1\|WP_107755757.1\|731470_732715_+\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	6.36772e-85
NZ_CP046567.1\|WP_107755756.1\|730132_731299_-\|steroid-3-ketoacyl-CoA-thiolase	gnl\|CDD\|181145	PRK07850, PRK07850, steroid 3-ketoacyl-CoA thiolase.	0
NZ_CP046567.1\|WP_107755760.1\|736174_736693_-\|hypothetical-protein	gnl\|CDD\|238404	cd00781, ketosteroid_isomerase, ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.	3.98764e-08
NZ_CP046567.1\|WP_017835369.1\|718694_719276_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	7.73646e-16
NZ_CP046567.1\|WP_107755750.1\|722432_723218_-\|CoA-transferase	gnl\|CDD\|224968	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism].	4.45874e-33
NZ_CP046567.1\|WP_107755752.1\|724152_724947_-\|enoyl-CoA-hydratase-family-protein	gnl\|CDD\|181174	PRK07938, PRK07938, enoyl-CoA hydratase family protein.	3.13156e-159
NZ_CP046567.1\|WP_107755749.1\|721353_722436_-\|2-nitropropane-dioxygenase	gnl\|CDD\|367316	pfam03060, NMO, Nitronate monooxygenase. Nitronate monooxygenase (NMO), formerly referred to as 2-nitropropane dioxygenase (NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses molecular oxygen to oxidize (anionic) alkyl nitronates and, in the case of the enzyme from Neurospora crassa, (neutral) nitroalkanes to the corresponding carbonyl compounds and nitrite. Previously classified as 2-nitropropane dioxygenase, but it is now recognized that this was the result of the slow ionization of nitroalkanes to their nitronate (anionic) forms. The enzymes from the fungus Neurospora crassa and the yeast Williopsis saturnus var. mrakii (formerly classified as Hansenula mrakii) contain non-covalently bound FMN as the cofactor. Active towards linear alkyl nitronates of lengths between 2 and 6 carbon atoms and, with lower activity, towards propyl-2-nitronate. The enzyme from N. crassa can also utilize neutral nitroalkanes, but with lower activity. One atom of oxygen is incorporated into the carbonyl group of the aldehyde product. The reaction appears to involve the formation of an enzyme-bound nitronate radical and an a-peroxynitroethane species, which then decomposes, either in the active site of the enzyme or after release, to acetaldehyde and nitrite.	1.63862e-81
NZ_CP046567.1\|WP_095718843.1\|725830_726748_+\|SDR-family-oxidoreductase	gnl\|CDD\|236099	PRK07791, PRK07791, short chain dehydrogenase; Provisional.	3.61148e-160
NZ_CP046567.1\|WP_107755755.1\|729043_729526_-\|nitroreductase-family-deazaflavin-dependent-oxidoreductase	gnl\|CDD\|281995	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase. This family of proteins is found in the genera Mycobacterium and Streptomyces. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase. Rv1558 is an F420H(2)-dependent quinone reductase involved in oxidative stress protection.	7.41302e-43
NZ_CP046567.1\|WP_156607092.1\|733981_734821_-\|hypothetical-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	0.00176123
NZ_CP046567.1\|WP_107755751.1\|723217_724156_-\|CoA-transferase-subunit-A	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	9.94006e-58

>NZ_CP046567.1|WP_095718843.1|725830_726748_+|SDR-family-oxidoreductase
MGICDGRVVIVTGAGRGIGREHALAFAAEGARVVVNDLGAGLDGSDVGESPAEQVVEEIRAAGGEAVVNGNDISSWEGARELVHQAIDHFGGLDVLVNNAGFLRDKMLVGMGEQDWDTVINVHLKGHFAPLRHAAEYWRAESKAGRPRRARVINTSSGAGLFGSVGQGNYATAKAGIALLTIQTAAEMKGYGVTANAIAPAARTRMTTSAGEGMASQMAAPEDGSFDAMDPANVSPLVVWLGSAESDEVTGRVFEVEGGKVTVCDGWQRAASEDKGAKWDPVELGSVVPRLLTASPSPVPVYGAR
>NZ_CP046567.1|WP_107755753.1|725027_725801_+|SDR-family-oxidoreductase
MSHIDLGLAGRVVLVTGGVRGVGAGISRVFREAGAVVVTCARRPADEGSDVADLEFHSVDLRDPGAVRAMVDRIVDRHGRLDVVVNNAGGAPFALAAEASPNFHSKIVALNLLSALTVAQEANRVMQPAGGAIVNISSVSGHRPSPGTASYGAAKAGIDSLTRSLAVEWAPAVRINSVVVGPVRTELAEMHYGDADGVAAVDATIPMGRMADPRDVGQAAAFLASPLAAYITGAELLVHGGGEKPAFLSASNANTTS
>NZ_CP046567.1|WP_107755752.1|724152_724947_-|enoyl-CoA-hydratase-family-protein
MGITLDKGSDGIATVTVDFPPVNAIPSAGWFELGEQILAAGRDPEVHVVILRAEGRGFNAGVDIKEMQNFEGFDHLLAANRGCYVAFNAVYECAVPVIAAVNGFCVGGGIGLVGNADCIVASDDAVFGLPEVDRGALGAATHLARMVPPHMMRTLYFTSRKVTAQQLHQWGTVYEVVPRDQLDAAARGLAETIAAKDTRVIRAAKEAINHIDPVDVKSSYRMEQGFTFELNLAGVADEHRDEFVKSGTNLDRRTDRAERTGENK
>NZ_CP046567.1|WP_107755751.1|723217_724156_-|CoA-transferase-subunit-A
MTTTPTPRDKRTSLDEAVSRLRSGMTIGIGGWGSRRKPMALVRAILRREDLTDLTVISFGGPDLGLLCSAGKVSKAYYGFVSLDSAPFYDPWFARRRTEGSILSREMDEGMVRAGLTAAAHRLPFLPTRAGLGSDVFRFWGDELTTVDSPYPVDGRTETLVAMPALRMDAALIHLDKADRHGNAAFTGVDGYFDDLYAMAADTVLLEVDEVVDSADALMNEVGPQRMLLSRMFVDTVSEAPNGAHFTFAGGYGRDEAFQRHYATAAKDDASWASFVSEFLSGSEEDYQTAVAAFAEKVAAEKAAAAADKGAK
>NZ_CP046567.1|WP_107755750.1|722432_723218_-|CoA-transferase
MTDPTTQPATAQSISRAEYCAIACAEIFAGAGEIFASPMTPMATIGARLARLTSEPDLLITDGEYRFLGQTPPLGKVIDFEGYIPFPRVFDVLQAGTRHVVMGANQIDRFGNQNLSAFGDDVQQPTRQMFGLRGAPGNSINHATSYWVGKHSTRVFTEEVDIVCGVGYDRYTPGDPAFRYHHLHRVVSNLGVFDFGGTDHGMRALSLHPGVTAEEVAENTGFEIEGLAEAAVTRAPSAEELRLIREVLDPRGFRDREVPSA
>NZ_CP046567.1|WP_107755749.1|721353_722436_-|2-nitropropane-dioxygenase
MSAPTITTAFTELVGVEYPIVQTGMGWVSGPELTAATANAGGLGIIASATMTYQELENAIVRTKELTTRPFGVNLRADAEDAAERCELMIRHGVTVASFALAPKPELIARLKDNGLVVVPSIGAAKHAVKVASWGADAVIVQGGEGGGHTGQVATTLLLPSVIDALGGAGNTSIPVIAGGGFFDGRGLVAALAYGAAGVAMGTRFLLTSDSRVPDAVKKQYLEKGLQDTVVSTRVDGMPHRVLRTGLVNALESGSPVKGMLAAVQNANRFKSMTGMKWQTLARDGLNMKKASERTWQQIVMAANTPMLLKAGLVEGNTEAGVLASGQVVGMIEDLPSCDELIQRIMTEAHQRLKALREMD
>NZ_CP046567.1|WP_095718838.1|720562_721183_-|hypothetical-protein
MTPHRTAVRVAAALGATAALTLAGAGAASAATAANPVVNGNTVSVTFEKDFVVDADTCVAAVVPTSSAPALLTQLEALNNLDLTAINNLINSMADVTFLQTGGLVPSPIASVTIADVTVSATVPSNVYAVVSYCLLGGSDIGGPVLVGDPLDAIQGSLGGLSTEDTLGTLSSATGEGDASGLGSLLGLLGGGEGGGLGLDTLSAEG
>NZ_CP046567.1|WP_107755748.1|719306_720476_+|acetyl-CoA-C-acetyltransferase
MTSVTGREAYVIDAVRTPAGKRGGSLSGQHPADLGAHVISAVVERTGIDPEVVDDVIFGCVDAIGPQAGNIARSAWLAAGMPLGVPGTTVDRQCGSSQQAIHFGAQGIMSGTQDVILFGGVQNMSALPISSAMLAGREYGFDDPFTGSTGWVSRFGSQEISQFNGAQMMADKWDISRGEMEEWALQSHGRARAAIAEGRFANEYVPLAGLEADETTRETTLEKMASLPVLAEGGSLTAAVASQISDGASAGLLASAEAVEKYGLTPRARIHHLTVRGDDPVMMLSAPIPATRWALEKTGLTIDDIDVVEINEAFAPVVLAWIKEIGADPARVNPNGGGIALGHPLGATGAKLFATLLNELERTGGRYGLQTMCEGGGTANVTIIERLDS
>NZ_CP046567.1|WP_017835369.1|718694_719276_+|TetR/AcrR-family-transcriptional-regulator
MTSTTRREELLAIAAGLFAERGLRATTVRDIADAAGILSGSLYHHFSSKEAIVDEILRGFLDSLFGDYHRIVQAGSSPRETLEGLVRVSFEAIHRHRDEVAIYQDELKHLRGNPRFDYLRERNTEFREMWTDVLGRGIESGQFRPDLDIRLTYRFLRDTVWVAVRWYRPEDDDDHAAIADQYLHIVLDGLAVD
>NZ_CP046567.1|WP_107755747.1|717790_718594_-|hypothetical-protein
MRSTVFSSPRSSGPRRAGRRVLAASAAVGLTLGLASCTIGESGDDAAPAETTPATSEMRQEQPTGAPGAPEAGVDQLVLNAQDAPELGLAPVSAEEIAGGVGALEDIAAGVRVDPERCADFSQDAFLAQAEPGAIAIQAGQSENTAYAVSVTTVTAGLNDRDRLIVDCPTMTVTIPLEGTEVTTRAENQLLPLEAPEGVEHFAAITQNNAMDMMGQELLTGNVLITGVVRGIGVSVTVANAAGPVSDAERDTAVDAFAKQVEKIRNA
>NZ_CP046567.1|WP_107755755.1|729043_729526_-|nitroreductase-family-deazaflavin-dependent-oxidoreductase
METGVDDPRRSKPWVLGIIKVMSRVNTWTYRVSGGRIGGNWRVGSALSAPVPVCLVTTTGRKSGEPRTVPLLHLPDGDRVLLVASQGGLPRHPQWYLNILANPEVTIQVGRRTRAMTAREASAEERAALWPRLVERYADFASYQANTSRVIPVVICEPTG
>NZ_CP046567.1|WP_017835358.1|729543_730131_-|GNAT-family-N-acetyltransferase
MSSTTIETAAARRNEVFSAISSANGTEDAVEAIAHLLAVPVDQAREVLKTPLEAFVGHTTDHPVGSGPHGFSLFPFRDTADHADLYHSRSSDETSATAGEWDQQKTEEERKAGLARVEAESAMWFVAVDTSRDQPVGLVFGEQIDDGDVDVAIWIHPEERKKGFGLAALKECRRELAAFFPGKHVIVRAPLPGSR
>NZ_CP046567.1|WP_107755756.1|730132_731299_-|steroid-3-ketoacyl-CoA-thiolase
MGNPVIVEAVRTPIGKARGALSGLHPAHLLGASQKEVIRRAGIDASLVEQVVGGCVTQAGAQGNNVTRGAWLASGLPWQTACTTIDCQCSSAQQATHFIANLIHAGAMDAGIACGVESMSWIALRAAVGDGSNGMPRPDDWSIDLPDQFTAADRIARRRGLSREDLEELGVRSQANAARAWQEGRFDRETFAVEAPERLKDGTYTGETVTVTRDQGLRETTAEALAGLKPVLDGGLHTAGTSSQMSDGSAAVLLMDEDVAKAHGLTPRARIAHQALVGGEPEYHLDGPVQATQRVLDRSGMSISDFDLFECNEAFASVLLSWAAVHGPDMDKVNVNGGAIAIGHPVGSTGARLVTTALHELERTDGERALITMCAGGAQASASIIERI
>NZ_CP046567.1|WP_107755757.1|731470_732715_+|cytochrome-P450
MQAVTIPEGFDFTDPELYEKRLPHPEWAHLRRTEPIRWCANEPGADGFDDDGYWVVTKHEDVKEISRRTNEVFSTFENTAIPRFAPGTEREIVELTRLLFINQDGEEHRKYRRTISKGFTPRNIEKLRDHLAEKARVIVETAAAKGSGDFITEVASELPLQAIAELIGIPLEDRHQIFEWSNQMTSYDVPGKVEESQMANAMVLSYAQELAAKREVDPRDDLVTKLIQADIDGERLTPDEFGWFVVLLAVAGNETTRNATTHGMVAFLDNPDQWELFKAERPATAYDEILRWASPITSFQRTATEDVEIGGVTMKKGDRAAIMYGSANFDEDVFTDPFSFNILRDPNPHLSFGGNGPHYCIGANLARLQIELIFNAIADHLPNLEALGEPSRIRSGWLNGITEWTVDYKCPVLR
>NZ_CP046567.1|WP_107757976.1|732746_733757_+|alpha/beta-fold-hydrolase
MSDHRHVDRDGVRLHYVVAEPAPEPAPTAGSPGTVVLLHGFPHFWFTWHRMIPALAAAGWRVIAPDLRGMGRSAAPADVEAYSPREVVDDVLAVCDAEGAGRVVLVGFDFGAGVAYDTCHLEPGRVRAVIGMENPFMGTAGTVPPLEGSAMMAEKHFLHLHYFSQPGVAEADLAGREREFLTRVFYALSADYHYLDVWQHPPGSTYLEALPEAPPLPWRWLSVEEMDVYEAEYARTGFAGPLQWYRAMDVSWSARKEFKRQTNPVPFYFLYSEHDPDLEGFHGRDPLSKLGRHHDDVRMVRAISSPAGHLMHLEATEDTHREILTCLADIAASVPA
>NZ_CP046567.1|WP_156607092.1|733981_734821_-|hypothetical-protein
MTRYSLRSAFRMIVPGVYAAKGARLSRWDFIRAVDIWAPADAVIGGWSAAYLHGEHWYSTERGNGVVDVFTSAEPRVPTGVRERRLRQPIPAADACEIGGIRITAPARTAVDVARWSTGADRKICIVDSVCSATNTSVRAVADAATRMPGQHGVSRVVRLLDACDADAHSPQESLLRLRIERSSLPQPVSQFEICEPSGHLLTIADLAYAREKVAIFYDGKHHGDPEQWRRDLRITARLADLGWQVVRVTKGMRPEEVIGHIASALTRARRDLRHLTSS
>NZ_CP046567.1|WP_107755759.1|735267_736173_-|TIGR03619-family-F420-dependent-LLM-class-oxidoreductase
MPRVVDAEFSVPISFSPVDQIMDIARGAEAAGFDRIVLPDSLFHPRRQDEDYPYTPDGSRMWDADTQWVEPLVASAAMGGATSRIRFCPQVLKVGPRNPLLLTRQVASVALLTGNRLDLGVGIGWDPNEFEWCGAPFKGRGKRTDESLAIVREALRGEWMEFHGEHFDFDELIFTPAPSEQVPFYVGGHTEIALKRAARVGQGWTSAMMGYDEIVTTVRRLGELLEADGRSLADRGDGKPFAIQVVCLDRFGTRGFTELAEAGVTDIIVMPWMIDGHGFDCSTQQKLDSIAAFGEKYGLGS
>NZ_CP046567.1|WP_107755760.1|736174_736693_-|hypothetical-protein
MSNPYLDEDGMYRPLEMSEAASASPAYAAARRSWAATNAGDRDAWIAGWNPEGTIEDPVGPSMFDAEGIGHTGTERLLEFWEKAVATPDHIEFRFDRGIAAGDELLCVGTMRTHMGSSIMEIDIAVDYRVDSQGQLVNLRAFWEQDVAMASGLRPLTDDDLAAIAGAVKKDV
>NZ_CP046567.1|WP_107755761.1|736689_737874_-|thiolase-domain-containing-protein
MSAHSPGLPAAVLGTGQTHHVARRTDVSMSGLCREAIDAAMADAGVGWDEIDAVVVGKAPDLFEGVMMPELMMADALGAVGKPLLRVHTAGSVGGSTAVVAASHIQSGRYRRVLAVAWEKQSESNAMWALSLPVPFTAPVGAGAGGYFAPHVRSYIRTTGAPEHVGAMVAVKDRLNGSINPHAHLKQPDLTVDKVLQGQMLWDPIRFDETCPSSDGACAIILGDAAAAEEVESTGRRVAWVHATALRTEPGTFAGRDYANPQASRDAAAALWAEAGITDPAEEIDAAEIYVPFSWFEPMWLESLGFAAPGEGWRMTESGATARDGSLPVNPSGGVMCSNPIGASGMLRFAEAARQVMGRAEEHQIPGARKALGHAYGGGSQFFSMWVVGSERRR
>NZ_CP046567.1|WP_017835350.1|737870_738932_-|lipid-transfer-protein
MTPTAPRDVAVVGFAHARHTESTFGTTNGVEMLAPVFAECYRQTGLDRTDIDFWCSGSCDYLAGRAFSFISAVDTIGAVPPISESHVEMDAAWAFFEAYLKIATGQADTALVYGFGKASASTDLDSAMALQLDPYTVAPLWPGRHHIAALQARAGIDAGTWSEGAMASVAARATGRDERELLAEPYVADPLRRHDCPPVTDGAGAIILASGDRARELVDTPAYVTGIEHIADSAEFGARDLTDSPSARAAAVRATRSSGDRPDLGGVTVAELHTQYTHQELLLRSALGIGDHVAVTPSGGSLLADPLFSAGLERIGYAANDVMEGRTERALAHATSGHLLQQNLICLLEGRPA

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Crispr_ID: NZ_CP046567_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046567_2

1457142-1457235

Orphan

Consensus_repeat	Method
GGTCAGCCGTGGCGGCGGACCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046567_2

>merge|NZ_CP046567|2|1457142-1457235|CRISPRCasFinder
GGTCAGCCGTGGCGGCGGACCACCGGCCCCGCTCACCCGTGGCGGCGGACCACCGGGCCCGCCCGGAACCCGCTCAGCCGTGGCGGCGGACCAC

>NZ_CP046567|2|1|1457142-1457235|CRISPRCasFinder
GGTCAGCCGTGGCGGCGGACCAC	CGGCCCCGCTCACCCGTGGCGGCGGACCACCGGGCCCGCCCGGAACCC
GCTCAGCCGTGGCGGCGGACCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046567.1\|WP_107756229.1\|1445122_1446121_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046567.1\|WP_156607331.1\|1466842_1467469_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046567.1\|WP_107756235.1\|1454366_1456145_-\|malto-oligosyltrehalose-trehalohydrolase	unknown	unknown	gnl\|CDD\|274114
NZ_CP046567.1\|WP_107756239.1\|1459418_1459784_+\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NZ_CP046567.1\|WP_095717309.1\|1456881_1457118_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046567.1\|WP_107756236.1\|1456199_1456877_+\|IMPACT-family-protein	unknown	unknown	gnl\|CDD\|224653
NZ_CP046567.1\|WP_107756238.1\|1458325_1459255_+\|type-IV-toxin-antitoxin-system-AbiEi-family-antitoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|379128
NZ_CP046567.1\|WP_107756234.1\|1453084_1454359_+\|threonine-ammonia-lyase-IlvA	unknown	unknown	gnl\|CDD\|236318
NZ_CP046567.1\|WP_107756241.1\|1464495_1466655_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP046567.1\|WP_156607153.1\|1459823_1462292_-\|malto-oligosyltrehalose-synthase	unknown	unknown	gnl\|CDD\|200475
NZ_CP046567.1\|WP_107758059.1\|1469418_1470300_+\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|236125
NZ_CP046567.1\|WP_107756242.1\|1467472_1468192_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|223979
NZ_CP046567.1\|WP_107756233.1\|1449487_1453042_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235554
NZ_CP046567.1\|WP_107756244.1\|1470329_1470890_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046567.1\|WP_107756243.1\|1468264_1469350_+\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NZ_CP046567.1\|WP_107756231.1\|1446760_1447687_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|161659
NZ_CP046567.1\|WP_107756240.1\|1462294_1464439_-\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|131155
NZ_CP046567.1\|WP_107756232.1\|1447758_1448481_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046567.1\|WP_107756230.1\|1446192_1446768_+\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|237810
NZ_CP046567.1\|WP_107758058.1\|1448506_1449475_+\|EamA-family-transporter-RarD	unknown	unknown	gnl\|CDD\|225510

Protein	Function_ID	Function_description	E-value
NZ_CP046567.1\|WP_107756235.1\|1454366_1456145_-\|malto-oligosyltrehalose-trehalohydrolase	gnl\|CDD\|274114	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP046567.1\|WP_107756239.1\|1459418_1459784_+\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	5.18161e-24
NZ_CP046567.1\|WP_107756236.1\|1456199_1456877_+\|IMPACT-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	8.33363e-48
NZ_CP046567.1\|WP_107756238.1\|1458325_1459255_+\|type-IV-toxin-antitoxin-system-AbiEi-family-antitoxin-domain-containing-protein	gnl\|CDD\|379128	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin. AbiEi_4 is the cognate antitoxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	0.000393235
NZ_CP046567.1\|WP_107756234.1\|1453084_1454359_+\|threonine-ammonia-lyase-IlvA	gnl\|CDD\|236318	PRK08639, PRK08639, threonine dehydratase; Validated.	0
NZ_CP046567.1\|WP_107756241.1\|1464495_1466655_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.38813e-55
NZ_CP046567.1\|WP_156607153.1\|1459823_1462292_-\|malto-oligosyltrehalose-synthase	gnl\|CDD\|200475	cd11336, AmyAc_MTSase, Alpha amylase catalytic domain found in maltooligosyl trehalose synthase (MTSase). Maltooligosyl trehalose synthase (MTSase) domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP046567.1\|WP_107758059.1\|1469418_1470300_+\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|236125	PRK07896, PRK07896, carboxylating nicotinate-nucleotide diphosphorylase.	2.78885e-148
NZ_CP046567.1\|WP_107756242.1\|1467472_1468192_-\|NUDIX-hydrolase	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	5.97588e-15
NZ_CP046567.1\|WP_107756233.1\|1449487_1453042_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235554	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.	0
NZ_CP046567.1\|WP_107756243.1\|1468264_1469350_+\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	1.14706e-171
NZ_CP046567.1\|WP_107756231.1\|1446760_1447687_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|161659	TIGR00005, Ribosomal_large_subunit_pseudouridine_synthase_D, pseudouridine synthase, RluA family. In E. coli, RluD (SfhB) modifies uridine to pseudouridine at 23S RNA U1911, 1915, and 1917, RluC modifies 955, 2504 and 2580, and RluA modifies U746 and tRNA U32. An additional homolog from E. coli outside this family, TruC (SP\|Q46918), modifies uracil-65 in transfer RNAs to pseudouridine. [Protein synthesis, tRNA and rRNA base modification].	2.56673e-104
NZ_CP046567.1\|WP_107756240.1\|1462294_1464439_-\|glycogen-debranching-protein-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP046567.1\|WP_107756230.1\|1446192_1446768_+\|signal-peptidase-II	gnl\|CDD\|237810	PRK14764, PRK14764, lipoprotein signal peptidase; Provisional.	7.26729e-63
NZ_CP046567.1\|WP_107758058.1\|1448506_1449475_+\|EamA-family-transporter-RarD	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	1.78107e-91

>NZ_CP046567.1|WP_095717309.1|1456881_1457118_+|hypothetical-protein
MSMQPYQPNSIEAQKQQVRKDARTTAIALGVTVVALPIALFASSFFTVVAILAGIVAIYKGNQVRQAISGKPKNRELY
>NZ_CP046567.1|WP_107756236.1|1456199_1456877_+|IMPACT-family-protein
MTDSATRVLRLSAGPDVTGTYEERRSRFLAVLRRCDDEAAARDLISDLRRAHPDARHHCSAFLVDVPGSSRIERSNDDGEPSGTAGTPMLEVLRGSRVTGVGAVVVRWFGGTRLGTGGLVRAYGSAVSSAVDEAWRAGRIVEVTRTPAWRAEVDHSLAGGLEGAVRAAGAQVLGVDYGGRVELTVAGDLEVLGPILATRTSGGVEWEPAGVATTENAARLRDVES
>NZ_CP046567.1|WP_107756235.1|1454366_1456145_-|malto-oligosyltrehalose-trehalohydrolase
MTSASSDTFSVWAPTAEAVGLVLDSADADPFPMTRAADGWWSSTVVREQGRDYGFVVTGDDGQTSDPRPDPRSPRQPHGVHGLSRVHRVDATRWSDAHWTGRQLAGSVLYEMHVGTFSPVGTLTSAIDHLDDLVELGVDMVEVMPVGAFNGEYGWGYDGVAWFAVHEPYGGPDAFQQFVDACHARGLGVCLDVVYNHLGPSGNYLPEFGPYLSAADGPWGSGLNLDGPHSGEVRRYIIDNALRWFDEFHVDALRLDAVHALHDGSAVHLLEQLAVEVESLSAHLGRPLSLIAESDQNDPRLVTAREGGGLGLTGQWDDDVHHAVHAAVSGERQGYYADFGSLEALRQVLTGAFLHAGTWSAFRGRVHGRPLDVERVPGSRFVAYTLTHDQVGNRAAGDRPSVNLTPAQQLAKAAIILCSPFTPMLFQGEEWGARTPFCFFTSHPEPDLAEAVRRGRTREFAEMGWDPATVADPQDPETFRRSVLDRSEQSEDQHAGILRGYRALIALRRAEPELSDPWLGAVRVRCGVEADDGRWLIVHRGSLALVVNLGTEPSRVPVTGDEVLTSGAVVDHDSVFCQAFGFAVVRTHTVTG
>NZ_CP046567.1|WP_107756234.1|1453084_1454359_+|threonine-ammonia-lyase-IlvA
MTVTDSAATQVVTPDDIDTAARRIGDVILASELHQSERLSEQTGATILLKREDQQAVRSYKIRGAYNLMSQLTGDERSAGVVTASAGNHAQGVAFACRSLGINGRIYVPTNTPKQKRDRILAHGRNWVELVVTGVNFDAAQAAARADAERTGATMVPPFDHPDTMAGQGTIAAEILAQLDSVPDAVVVPVGGGGLVGGLATYLAEYAPDCKVIAVEPAGAPSLTRALEAGEPVTLDTVDTFVDGASVARLGDFPFGVISSMTERIQVLTVDEGAVCTAMLELYQNEGIIAEPAGALAVTALDQLDIEEGATVVCIISGGNNDVSRYSEIIERSLVHQGLKHYFLVKFPQEPGQLRRFLDEVLGPEDDITQFEYLKRNNREYGAALVGIELGSATGLHSLLERMDASRIDCERLEPGTAAYEYLT
>NZ_CP046567.1|WP_107756233.1|1449487_1453042_+|DNA-polymerase-III-subunit-alpha
MGGSQFVHLHNHTEFSMLDGMAQITPLFAEASRLGMPAVGMTDHGNMYGSSDFYKQAVKTGITPIIGIEAYVAPESRFNKKRVLWGEKHQKGDDVAGSGAYTHMTMLAENATGLRNLFLLSSLASYEGQLGKWARMDAEILAEHSEGIIATSGCPSGEIQTRLRLGQRKEAYEAAEKWQSIFGKDNFFLELMDHGIDIERRVREDLVALGRDLGMPPLVTNDCHYVTREQAHAHEAMLCVQTGKTLADENRFKFDGDGYFLKSADEMRAQWDPEVPGGCDNTLWIAERVQPYDEIWAPRDRMPKFPVPEGETEDTWLAREVHKGLEWRFPAGVPQEYLDRAQFELEVIKGKGYPGYFLVVGDLIEYARSIGIKVGPGRGSAAGALVAYALKITNIDPIEHGLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYASEKWGSDKIAQVITFGTIKTKAAIKDAARVNFGQPGYAIADRITKALPPAIMAKDIPLSGITDPTHERYGEASEVRQLIETDPDVKRIYDTARGLEGMVRQAGVHACAVIMSSEPLLDVIPMWKRAQDGALITGWDYPSCEDIGLLKMDFLGLRNLTVIGDCLENIKSNRGEEIDLDTLSTDDQATYDLLASGDTLGVFQLDSGGMRELLKRMKPTGFNDIVAALALYRPGPMGMGTHWNYADRKNGKQELTPIHPELEEPLKEILGETHGLIVYQEQIMAISRELAGYTAGEADGFRKAMGKKKAEVLAAEYEKFSGGMGERGFSKEAVDALWGTIEPFASYAFNKSHAAGYGLVSFWTGYLKANYPAEYMAALLTSVGDDKDKAALYLSNCRQMGIRVLPPSVNESLTNFVSVGEDIRFGMGAVRNVGTHVVDSVVSARKEKGEFTDFSDYLAKIDQTACTKKVTESLIKAGAFDSLGHPRKGLFLVHADAVESVMSTKKAEAVGQFDLFGGGDAEDAGGASAFSDVFAVRVPDEEWDIKQKLALEREMLGLYVSGHPLDGLESALAAKTDTSIATIHEGELPHGTAVTIGGIISGVDRRVNKNGEPWAIVTIEDFNGSVEVLFFPKTYRLAALDIAEDAVVLVKARINIREDRVSVFGDTLEVPDLVVGGNGAPLALTLPTKMCTIETVTALKQVLGRHPGPSDVHLRLVNGTSSTVLRLDDHLRVETSSSLMGDLKALLGPGCLTG
>NZ_CP046567.1|WP_107758058.1|1448506_1449475_+|EamA-family-transporter-RarD
MRDRGVVIGKRDPTDRSVAIGMLAGACAYTLWGFFPAFFPLLEPAGAVEIVGHRVVWSLVIMALVLSVTRRWRQLWSLDRLSWARIAGAAGFITVNWGVYVYTVNSERVTEAALGYTINPLVSVLLGVLIFRERLNRPQVGAVALAVVAVGVLTAGYGHVPYLSLLLATSFGFYGVVKKKLRADPVVGMTGEVLVIAPLALSVLVWLGVTGAGTFTGHGVGHSALLAASGVVTVVPLLLFATAAQRIPLATVGMLQYIIPILQMAWGLLVVGERLDAVQWAGFALIWTAVIVFTLAGRSPRSARAGVSGRVGAATYTGPDKP
>NZ_CP046567.1|WP_107756232.1|1447758_1448481_+|hypothetical-protein
MGVVIVLALVAVLTALRTELPRNPGVMSDALGPENGELVDDYLARAAGSLVDDGEPGDDGEDPATGADAPRWALVTAARPWSAAEAAAVVRGLPRVSGLYVQVPVDGVAMPVTGVTLAEPAAGESGREPVLDRGLAEVVHRSGGEVPTGPGGQAPPDADRAAATAALTAARIRSGEPAIIGLLARGTPAQLREAAGRPWVRAVEALPADAVWQRFAVRPLQPQQVDAALPLPDDAPVPSA
>NZ_CP046567.1|WP_107756231.1|1446760_1447687_+|RluA-family-pseudouridine-synthase
MGELRTFPVPDGLDGMRVDAGVSRLLGLSRTAVADLAGQGKVLVDGRAVGKSDKLTGMSWIEVEMPDPRAEPAVVAEPVEGMAVVYSDADLVVVDKPVGVAAHASVGWTGPTVIGGLAAAGYRISTSGPPERKGIVHRLDVGTSGLMVVAASERAYTLLKRAFRDRTVDKTYHALVQGHPDPLSGTIDAPIGRHTSNDWRFAVTSDGKHSITHYDTLEAHQAATLVEVKLETGRTHQIRVHFSALHHPCAGDLTYGADPVLARRLGLERQWLHAVGLGFDHPGTGERVDFTSPYPDDLQHALDALRAA
>NZ_CP046567.1|WP_107756230.1|1446192_1446768_+|signal-peptidase-II
MTETNGTRSDAAGTTPGGTGARYFRAGPVAMLMIAAVIVAVDQVTKALAVWGLEGQDPIRIVGDSVRLLLLRNPGAAFSMGTGSTVVLSIVATVVVVGLLWFSRRVHSRWWAWGLGLILGGAAGNLVDRYVRAPGFLEGHVVDFVSVGWWPVFNVADSSLVIGVIVVAVAVVKGVEFDGSRGPVEKGGADG
>NZ_CP046567.1|WP_107756229.1|1445122_1446121_-|hypothetical-protein
MNLRTPSASGRPRPVRAGQRLLVAALATALVASSAACADEGDPPGDDAVAAQEDRALEPAVEVDPGPAPTVELLDEGSGELRVMAYSPSRDAVTVAITRSASARTTVPGAEPRLDETPEQTLTVEGLSEPDVDGAQRATVTARDFTSVDELRSAQFATAPGFAVTWTRSADGIVRGLTLEAPATATDAARAGVEITANAVSDATVAWPTEAIGVGARWTVTRSVDDAVAPERSVTYELAALDGDVATVTMELDAPEAAATLDAPAPDGGPGVTLEVEAYEVTGSGELTVDLRAPLPVDGTTESSTRAVYVDPGSGRRTTYVEDSVLRFRTAG
>NZ_CP046567.1|WP_107756238.1|1458325_1459255_+|type-IV-toxin-antitoxin-system-AbiEi-family-antitoxin-domain-containing-protein
MTGIEELRSRLLTTHDLIARGASAQALSRAVSTGAMIRLRPGFYVDAAARELSRDDRHLLMVLAADRCLVAPVFTHWSAALVLGLPSWGLPLRQVSVSRYGHAQRSRNTRLTRHDVSPVEADEIVTVGGLQVTSPDRTVVDIGRACGRDTSVAVADAAVYGELATAESLHVALDRAAGRSGLKKARVAMTLMDGRSESVAETLSRLTFSDHCLPTPVTQEDIIDTHGNRVARVDFFWREHGVIGECDGFGKYFDGHDLREVRRRLAREKDRDAELVALGYRVIHWRWADLERPWLLAERIRRVLLAAAA
>NZ_CP046567.1|WP_107756239.1|1459418_1459784_+|RNA-binding-S4-domain-containing-protein
MAVRVDAWTWSVRLFPSRTKAAAACRGGHVKVNGEAVQPSKAVVPGDRVQVTGTLGRIRVLEVVRTVNKRVGAPVAATCYIDHSPPPPPREVLASQPRRDRGTGRPTKRERRETDRLQGRG
>NZ_CP046567.1|WP_156607153.1|1459823_1462292_-|malto-oligosyltrehalose-synthase
MAHEDRAGAGALSRGAALASTYRLQLRTPASDPNGRGFVLADVEDLVPYLADLGVGSVYLSPILEATPGSTHGYDVVDPTRVAAELGGIDALRSLRATCREHGLGVVVDIVPNHLGVDRPTANRWWWDALRRGPESPYFSYFDFDTEPANGADGRIAIPVLGSPEDVGELVVVTPTDTDTSDSDAAEAELRFYDHRFPVAPGTGGGTAQEVHDRQHYRLVHWREPLLGYRRFFTVTGLAGLRQEDPAVFDATHAEVRRWCEEDLVDGIRVDHPDGLADPVGYARRLRGLAGEDRWLLVEKILAPAEVLDPAMPVDGTTGYDALRLIDQILVDPGGQARLTEQAARYCGGPGDEEQVHEQSARLKRQIVLEDLAPELGRLTRAVRRDAAVGRDASEVTSGDDDEEAQLRETLVSVIAHTPVYRADYPVLRGTLPGILEGLHRDRPELGPALGLVAGALARAAEASVRLAQVTGAATAKAEEDRLFYRLGRLVSLNEVGGSPGRMGLPVDAFHLAMAERARATPLAMTALSTHDTKRGEDVRARISVLSQLPDEWAHLVSEVFRSFPPPAEDAGYFLLQVIVGVWPAGDDLDGHELPDDLRPRLHDYAEKALREAAVHTTWTSQDGDFESAAHGWIDTLLDSGGALLTPFVERIAPAGRDNSLIAKTTQLLSPGVPDVYQGTEVWEDSLVDPDNRRFVDYEPLRSGAVARGGHPKFALVREVLRFRRSHPASMATGPHLALPVQGPSSGDVVAFARIVDGHAAIGMIARRRTAVLGADDFRGTEVVLPAGTWVVRPGGPVISSRVDVGDLLVGSPVVLLVREDD
>NZ_CP046567.1|WP_107756240.1|1462294_1464439_-|glycogen-debranching-protein-GlgX
MTNDDTQQSAPELIRAWPGSAFPLGATYDGTGTNFSLFSEVAERVDLCLIDRDGRETCVELTEVDGHIWHCYLFGVTPGQRYGFRVHGPYEPEHGLRCDPSKLLLDPYGKAFDGEFDGHPSLHSYDLDDPTRRNTENSLGHTMTTVVINPYFDWGNDRAPRHEYHNTVIYEAHVKGMTATHPDIPAEMRGTYAGMTHPAIIDYLTDLGVTAIELMPVHQFMQDQRLIDMGLRNYWGYNSFGFLAPHNEYAFAEKPGDAVSEFKAMVKAFHDANIEVILDVVYNHTAEGNHMGPTIGFRGIDNQAYYRLVEGDEQHYMDYTGTGNTLNVRHPHSLQLIMDSLRYWVLDMHVDGFRFDLASALARGLHDVDRLSSFFDLVQQDPVVSQVKLIAEPWDVGEGGYQVGNFPPLWTEWNGQFRDTVRDFWRGEPATLGEFASRLTGSSDLYENTGRRPTASINFVTAHDGFTLNDLVSYNEKHNDANGEDGNDGESHNRSWNCGVEGPTDDPDVLSLRHRQRRNMLTTLILSQGTPMIAHGDEIARTQGGNNNVYCQDNEIAWMNWELDEEKETLLEFTRTLVRLRKDHPVFRRRRFFGTVLRDDEDPQDIGWFSPDGSEMTHKDWDSGFGKSLAVYLNGEGIHEPDERGQRIVDDSFLLLFNAHHEPIEFSLLGPEYAQSWEVVLDTADHLEERSGELGSDETITVADRGTIVLRKVS
>NZ_CP046567.1|WP_107756241.1|1464495_1466655_-|acyltransferase
MATSTPNPPARRRRGKMAYRHDIDGLRGLAIALVVVFHIWMGRVSGGVDVFLTLSGFFFLGSLLRGAGLPGTPLNPLPHLKRLVRRLYPALVVTVAATVVGTILIKPPTQWSAIFEQTIASLFYYQNWELALTSQDYAAADATISPLQHLWSMSVQGQFYLVALAVVLGLTAVWRLVVKRGTPTLMLLGVVLAGTVASVWWSAYGQTVNQPWNYYDTGARMWELLVGGLVAIVLAGVVLPWPLRMLTTAAGLFMVVSTGFFFDGAAYFPGPLAWYPIGGALLIILGGNLPDGERATPRRDPVTWLLSGRVFRRLGDISYSLYLWHWPILILWLSYDRQAEITLVSGLVITAASVVLALLTEKYVERPLRMASRARSRTTPAAQKRDSLRKGSGRSEREQRRFVRATALVVVSAVASLGVVGWWTATSASRSAVPYVDSLTDPDHPGARAFFDGVPVPENVGYVPSLLQVGNDLPMSTLDGCISNFESSEVEMCVYGDVTAPRTIALVGGSHAEHWISGLDEVGRHYGFRVVTLLKMGCPLTLDASVSDSDELLYESCAEWTPAALAALVGLAPDFVFTTATRPVGVVGPDVTPRQYVDLWRALDQQGIGVIAIRDTPWLNQGRGPIRAGDCLGDGGTPEECGMPRERSVAPINPAALAGAGIDSVRLIDLTDGLCDAGNCPVVVGNVIVYHDSHHLSGSWVRSASGELARQMGPATGWW
>NZ_CP046567.1|WP_156607331.1|1466842_1467469_+|hypothetical-protein
MGTLAGVVGPAVVALLVWVVAAPRSELLSVGGGRGLRLPESGADGGSQLLMLIVLLGAAVVCAVLSLWHRHPGLRRPGGVPVLVLLPGLTCSVTAAAASPVAALLAPTAENAPYGTVVAQPPTAGALFFDRMIYGTTGPSWDWFPPGAGWLAFGAMIAAFTVAALAHVSHSSELRDGVEDVDGLDRVRPESVSLDGVPPESVSPNRPD
>NZ_CP046567.1|WP_107756242.1|1467472_1468192_-|NUDIX-hydrolase
MPKCNTGHEVLVVVGQVRRIAHPPSHALHVLLWQHTLGPAAGRWALPGGEVGDDEDLATSATRQLAEKVDVRSLSHLESVAEFSDPSRIPGRRVFASGFLGVLPSDADPDIPDDTAWFRVDDLPDTVFDHAEIVARARARLAAKLSYSTLGFALAPEEFTLSTLAQHYAAALGHPVDPTNLQRILTRRGELVRCGRSAPPGPSGGRPAALYRFAERRLRITDQFATLRPPVEVLTGARG
>NZ_CP046567.1|WP_107756243.1|1468264_1469350_+|quinolinate-synthase-NadA
MSTATGHGTTVAPRPESTVGRLESPLAVRIRHDGAVYTGVEPDARWASEIRRLAAERDAVILAHNYEVPAIQDIAHHVGDSLALSRIAAEAEQSTIVFCGVHFMAETAKILSPDKTVLIPDEAAGCSLADSITAEQLAEWKAEHPDAVVVSYVNTTAAVKALTDICCTSSNAVDVVESIDPDREVLFLPDQFLGAHVRRKTGRDNVLVWAGECHVHAAINGDQLTTKSRAHPGAELFVHPECGCATSALHLATEGAVPADQVKILSTGGMVDAARASGSREVLVATEIGMIHQLRKAAPEIDFLPVNEQASCPYMKMITPAALLRALVEGADEVHVDPATAEAARGSVERMIAIGNPGSGE
>NZ_CP046567.1|WP_107758059.1|1469418_1470300_+|carboxylating-nicotinate-nucleotide-diphosphorylase
MFDPDTRADALLAIRRALEEDLRYGPDATSLATVPADARATARLVTRSDGVVAGLPLIELVLTEVLGPHSDGSVGGGADFSVTLQARDGDRVSAGDVVAEISAPTRGLLTAERTILNLVCHLSGVATATRAWVDRLEGTGCAVRDTRKTLPGMRLLQKYAVRCGGGVNHRLGLGDAVLVKDNHVVAAGGILPALAAVRERFPDLPCEVEVDSLEQLDQMLASGVDLVLLDNFPVWQTQMAVQRRNAISPRTRLESSGGLGLDVAADYARCGVDFLAVGGLTHSVAVLDVGLDM
>NZ_CP046567.1|WP_107756244.1|1470329_1470890_+|hypothetical-protein
MATAGTRVKFVVMTGFWDTSEKSTPAERRQQRMAEARRRVESGENTSPPPPRPAPGPPTRSRSARSSRPATVDPLSVTGAQFAVWRSVQHFCATDSLPDARGTDLDLLVAWSDSIQPFRLRQRIVARLDSQGAWVPVCYAKDGARETITQAQADRYREARLGESTLSGGAQKPLRETDHPESTTSL

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Crispr_ID: NZ_CP046567_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046567_3

2915435-2915521

Orphan

Consensus_repeat	Method
GCGGCTGCAGTCTTCGCGCGCGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046567_3

>merge|NZ_CP046567|3|2915435-2915521|CRISPRCasFinder
GCGGCTGCAGTCTTCGCGCGCGGCTGCGGGGAGGGCGGGGAGGGTGCGGCTGCGGGTGGAGCGCGGCTGCAGTCTTCGCGCGCGGCT

>NZ_CP046567|3|2|2915435-2915521|CRISPRCasFinder
GCGGCTGCAGTCTTCGCGCGCGGCT	GCGGGGAGGGCGGGGAGGGTGCGGCTGCGGGTGGAGC
GCGGCTGCAGTCTTCGCGCGCGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046567.1\|WP_107757299.1\|2903501_2904938_-\|citrate-transporter	unknown	unknown	gnl\|CDD\|225407
NZ_CP046567.1\|WP_107757310.1\|2920275_2921991_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|226355
NZ_CP046567.1\|WP_107757312.1\|2923551_2925189_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046567.1\|WP_107757301.1\|2906106_2907543_-\|amidase	unknown	unknown	gnl\|CDD\|181154
NZ_CP046567.1\|WP_107757307.1\|2916089_2917715_-\|sodium:solute-symporter	unknown	unknown	gnl\|CDD\|271369
NZ_CP046567.1\|WP_107757308.1\|2917711_2919367_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341275
NZ_CP046567.1\|WP_107757298.1\|2902107_2903484_-\|DUF1446-domain-containing-protein	unknown	unknown	gnl\|CDD\|377804
NZ_CP046567.1\|WP_107757303.1\|2909246_2909879_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046567.1\|WP_107757314.1\|2926569_2926887_+\|branched-chain-amino-acid-transporter	unknown	unknown	unknown
NZ_CP046567.1\|WP_107757302.1\|2907591_2908677_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP046567.1\|WP_156607258.1\|2925869_2926577_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215
NZ_CP046567.1\|WP_107757304.1\|2910777_2913495_+\|ATP-dependent-DNA-ligase	unknown	unknown	gnl\|CDD\|236599
NZ_CP046567.1\|WP_107757300.1\|2905022_2906048_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
NZ_CP046567.1\|WP_107757311.1\|2922937_2923555_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|131283
NZ_CP046567.1\|WP_107757309.1\|2919482_2920262_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|181069
NZ_CP046567.1\|WP_107758212.1\|2915575_2915995_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046567.1\|WP_107758211.1\|2914734_2915184_-\|sodium:proton-antiporter	unknown	unknown	unknown
NZ_CP046567.1\|WP_107757305.1\|2913736_2914249_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046567.1\|WP_156607256.1\|2925252_2925804_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP046567.1\|WP_107757306.1\|2914289_2914637_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP046567.1\|WP_107757299.1\|2903501_2904938_-\|citrate-transporter	gnl\|CDD\|225407	COG2851, CitM, H+/citrate symporter [Energy production and conversion].	6.97323e-144
NZ_CP046567.1\|WP_107757310.1\|2920275_2921991_+\|GAF-domain-containing-protein	gnl\|CDD\|226355	COG3835, CdaR, Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms].	1.55959e-14
NZ_CP046567.1\|WP_156607258.1\|2925869_2926577_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	9.44983e-24
NZ_CP046567.1\|WP_107757301.1\|2906106_2907543_-\|amidase	gnl\|CDD\|181154	PRK07869, PRK07869, amidase; Provisional.	2.50821e-115
NZ_CP046567.1\|WP_107757307.1\|2916089_2917715_-\|sodium:solute-symporter	gnl\|CDD\|271369	cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related proteins; solute binding domain. Escherichia coli PutP catalyzes the Na+-coupled uptake of proline with a stoichiometry of 1:1. The putP gene is part of the put operon; this operon in addition encodes a proline dehydrogenase, allowing the use of proline as a source of nitrogen and/or carbon. This subfamily also includes the Bacillus subtilis Na+/proline cotransporter (OpuE) which has an osmoprotective instead of catabolic role. Expression of the opuE gene is under osmotic control and different sigma factors contribute to its regulation; it is also a putative CcpA-activated gene. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	1.1852e-77
NZ_CP046567.1\|WP_107757308.1\|2917711_2919367_-\|AMP-binding-protein	gnl\|CDD\|341275	cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS). MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria.	0
NZ_CP046567.1\|WP_107757298.1\|2902107_2903484_-\|DUF1446-domain-containing-protein	gnl\|CDD\|377804	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA. This family consists of several bacterial and plant proteins of around 400 residues in length. One member of this family has been characterized in Pseudomonas citronellolis as AtuA, a member of a gene cluster that is essential for the acyclic terpene utilisation (Atu) pathway.	2.78797e-155
NZ_CP046567.1\|WP_107757302.1\|2907591_2908677_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.85885e-17
NZ_CP046567.1\|WP_107757300.1\|2905022_2906048_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.6173e-52
NZ_CP046567.1\|WP_107757311.1\|2922937_2923555_+\|signal-peptidase-I	gnl\|CDD\|131283	TIGR02228, Signal_peptidase_I_W, signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.	4.83683e-15
NZ_CP046567.1\|WP_107757309.1\|2919482_2920262_+\|enoyl-CoA-hydratase	gnl\|CDD\|181069	PRK07657, PRK07657, enoyl-CoA hydratase; Provisional.	1.46582e-71
NZ_CP046567.1\|WP_156607256.1\|2925252_2925804_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.27674e-16
NZ_CP046567.1\|WP_107757304.1\|2910777_2913495_+\|ATP-dependent-DNA-ligase	gnl\|CDD\|236599	PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed.	0

>NZ_CP046567.1|WP_107758211.1|2914734_2915184_-|sodium:proton-antiporter
MDRNWIELLQELRIVQTGGQVLTGFLLVVPFQDRFADIGASGRALYLVVLTLALASTVVLLAPVMIHRAVFRSHRKDRVLQLSATLARVGLAMLSIALVGLAALVFSLVVGPVAGLVAAAVMAVLVTAMLFVLPARVRHRAATTPYYAG
>NZ_CP046567.1|WP_107757306.1|2914289_2914637_-|hypothetical-protein
MSAMGMYSGSVDRHQNAAAEQARTRLDAALREWSGQRAALTADGLGRNPLRRVPRGWPEATATRVEVAARESCVMDEQGAQTEASRLLWSAVAKLVGAAVSLAIPLGIVLALVAG
>NZ_CP046567.1|WP_107757305.1|2913736_2914249_-|hypothetical-protein
MVRLIVPVVIGLLFLAVIAGWFWYTTWLVRSAIDELAHRRRLLAGVDPLQVTATKAAASVEAAHDAAHRALSLTVESWYDLRESRAVGTSLVERFPKIEERAARDPEFLDVLEDADALLNDARPGADEIDELLGRTARMDELTLRLRTLVHQYDSAGRRGFGRFFPQGRQ
>NZ_CP046567.1|WP_107757304.1|2910777_2913495_+|ATP-dependent-DNA-ligase
MASKGGKESVEVDGRTIRFTHPDKVLYEATGTTKADVLEYYLAVAPLLMTYAGQRPVTRKRWPDGTEDKSFFEKNLPSHTPDWVSRVAIEHSSRTVTYPVLDSPATLAWFAQQAALELHVPQWTLTDGEPGRTRRIVIDLDPGQDVDLDTTAKVALRVRDLLTEAGLASYAVTSGSKGIHLYARLDKAVTAKGASAVAKQIAQSLAKQTPDLVTATMKRSIRDGKVFVDWSQNSGAKTTVAPYSLRGRAEPWVAAPRSWEELGDGGLTHLHWDEMLKRLESEGDLLEGLEGPAKKGGGSKKNATKKSATKKSSASREKKSASSKKSSSSSSDDGDPERGSSDSSGADSGDSDSGSDDSGSDDSTRAAAEEGCDTGPTDADAVVTSLEEYRRKRDRRKTPEPFDGEVETDRSDDDGPIFVIQEHHARRLHYDLRLEHHGVLASWAVPKNLPTEPKDRRLAVNTEDHPLGYETFEGTIPKGEYGAGHMTIWDRGTYECEKWKPDEIIVWLHGEKVSGRYVLIRTNAEKNQWIVQYMKDQSPDSFYGGRDNPKSSYPSDNDRSGGSDTSRSRESGDSTTRRSEAGQNRDSDMADRPDSPPLPMIPTSGSVTSLPEDTWAFEGKWDGYRVTVATDGRQSRVMSRNGNSMDWLADGFPGLAQAIGKPAVLDGELVVPGPDGVPEFSALAKQAAAEGDDSSIGPVHLFVFDVLGLDGVDLRRERWERRREVLDLLTPALEEVERVHVPGVLDGPGDRALDEAEEFGWEGIVAKRRDSHYQSGRRAKTWLKEKLLTTTEAVVGGWRPGKGGRSGSLGSLLLGLPAHTGLTYIGRVGTGFSDRQGKALLEELEPLRRKTSPFLEDLPSDARRDAIWVLPKLVVEVRHQGFTEEGVLRQSSWRDIRRDKLPGDL
>NZ_CP046567.1|WP_107757303.1|2909246_2909879_+|hypothetical-protein
MSPRWSALAAVLAAYGPRWAESAYANESTWHYDDGGGNWADIRFAGEGRAVLLGHDHEYSTTYFRAAAEYFGEPETDLLAGCPAWWAEAIGDYLERIDSEGMWIGFIYGYDGGTWTRADYDADDGFTALNLPALDDRAVLKQITEQLSMSIGGRPAGAAPAPALLDRMLAECPDLSADTAQALLGGRGLDVDAALRAAHQFRRGPQEHAT
>NZ_CP046567.1|WP_107757302.1|2907591_2908677_+|helix-turn-helix-transcriptional-regulator
MVAPCAPGHIGRMADAPFRPGLRRSEVCVTPEMTWWVRLADSVRAAGRGEAPLDEPVRMVRDGLGFDCATLVGPQRATTGQAHPVLVNLDYPGDAIRFISTTYAAECPAHRYITEQRVAGRFIDLPYDFRSSRTYREALKPNGFHEGLTLPLGVLRPGSPRPGFLALSSTHGRPLRDEALLGLTMLASEIASLTDPRATRPPAPADLVVWVGRGTLDVRVGDVAAGPFTARDLSRIGALHQRTGAALGFRHLDDSRGWWHVTTDAAGDGVLIRIQQAECGDHLTPRELDVVGLLSRGWTNDEIATALGISVRTTRTHVEAALMKLGVPNRTALGREALLRDLDSLDAIRCVAEASHRSLPA
>NZ_CP046567.1|WP_107757301.1|2906106_2907543_-|amidase
MNVEEYSAQDATSLAAMVAAGEVTADELATLATDGIAAVNAHINAVASGPFDTPLDHASEGTFAGVPFVIKDLVCHAEGVPTRMGTRMLADGVVPPADTHLMERFRAAGLATVAVSTTPEFGYNANTEALVYGSTRNPWDTSRSAGGSSGGSGALVAAGAIPMAHANDGGGSIRIPAAVNGLVGLKPSRGRVPLGPDLDSTALSGKAIEFAVTRTVRDAAALLDEVAVSYPGDRFIIAPPERPWAREVGADPGRLRIALHTDSWAGTAVDPEVVAAVEQVARTLEGAGHHVERATPAFEWEEFLQATAKAWAAFLAESVMGVEAMSGTTAGPDNLEATTWACVQFGRGLTVLDMAAATATFTAVSREVGRFFGDHDILLTPTTNHPAMPLGYLDANADLDDLGWTRRIFDAFSFTPLFNTTGTPSISLPLGQSRDGLPIGVQLAGPMCSESMLLRVAAQLEAAMPWSARRPGVHVTTV
>NZ_CP046567.1|WP_107757300.1|2905022_2906048_+|LysR-family-transcriptional-regulator
MSMNLGVHHLRAIVAVAHHRSFTLAAAELGVAQSSLSRTVLEAERRLRTPLFQRSTRRVLLTSDGEAVVTVAQGVIEHVDTGLAHIEGYLAGTRGSITIATLPSLAATLLPPMIRVYQRLHPDVAVHVEDNLSDQVTEHLRSGRADLALTTHPGDGRSGGDSGGGAGDDSAGGSGGGSEYVARPIATDSFFLAVHPDHRLAGAETVEWSDLQSEPLIAFGPASSVHKAVSAALDDAAVSPATIVRAQNVAAVAGLAASGLGVAPVPGFVLPLMRFAGLTFVPLVPERSRTITLVRHRDRPLSPAVSAWMDVVDRHLGSGPEGLPGVRWVRPGAGPGGGVAG
>NZ_CP046567.1|WP_107757299.1|2903501_2904938_-|citrate-transporter
MLAWAGFLTIGVILALLLSNRVAAVVALAGVPIVFALIAGFGPAEIGEFVADGLGGVVGVTVMFVFAITYFGVMRDAGLFDPLIRCIVRWAGNAPVTICVATTALAMAAHLDGAGATTFLITIPAMIPLFDRLGMSRLTLSVCVGLGAGTMNLLPWGGPTARAAATAGVPANDLWVPLIPAQLAGMVVALAIAWFLGAREARRIGALQFEPATTAPAAATTTTTTTTTTTPAGPPTTGDTPPADEPAPEDQAEPAGVDELTEEERALRRPRLMWFNAALTIAVLAALIVGVAPPELIFLVGVVVALVVNYPGLKSQTARIEAHATGAMLMATTLLAAGSFLGILEGSGMITAMADAATSVIPSSAAPGLPVIIGILGVPLSLLFGPDAFYFGVLPVLNALGEQYGVSSIEMTQAALLGQETVGFPISPLTGSFYLLVGLAGVDIGKHIKALFGWAWLVSIVMVVVALLTGVIAFGATA
>NZ_CP046567.1|WP_107757298.1|2902107_2903484_-|DUF1446-domain-containing-protein
MNRGSGRTGRGPGRTIRLGAGAGFAGDRIDPAAELARSAALDYLVFEVLGERTIAAANAQRISGAGHGYDPLLRRRVEATLPDCRRNGTTIITNGGAADPVAAGALAVEIAREHGLTGTRVGVISGDDVLDAVRRIDPVLWETGRPLSAESDEVVSANAYLGAAPVAEALAGGADVVIAGRLADPALYLGAIAHEHGWDLAGDPTLLGQGTVVGHLLECAGQLTGGYFADPVTKPVPGLDRLGFPFADVAADGQAVLSKLPGSGGLIDTRTVTEQLLYEVGDPSAYVTPDVVADFSGVTLDQVGPDRVQVTGGDGTARPDELKVTLGFRGGWLGEGQISYAGPRALDRAELAADIVRRRLVDVHGLDEQTVLVELIGAGAAFRGLAEAGDPVEVRLRVAARVPDRAAAEAVGWEVESLYTNGPAAGGGARKHVQEVLAIRSCTLPRALVHTHVSIEEA
>NZ_CP046567.1|WP_107758212.1|2915575_2915995_-|hypothetical-protein
MLDPGDAPEPDHKRAGMLIHAFVAVAAFALLGMVTDTWQMVFIAVPIFAVIMMLLGSLQSDGSWERVSTLAIVAYCSGLGVLVLWSILTAGGEAMLWGLPMSMGVIFYLLWPYTAVGAGLLYALVFDRTIDEKRLAAAV
>NZ_CP046567.1|WP_107757307.1|2916089_2917715_-|sodium:solute-symporter
MNNPVVIGVVLAYFVLMFAIGAWANTKMKSAKEFLVAGQSLGFFVMAIASFSSIQSGWGMVGGTGQTYAWGLQALIAVGLLAPFGFAVAWFLLGSRLNWIGKKHRVYSVPDLIRVRFQDRTSHATMSVAIFIASIAYMTAQVTSIGVIISLLLGTSIPTSVWIGSMVVAAYTMAGGMLAAVWTDLVQGVLMVVMSVGLFFFAVQVAGGWHPMLDTISAGSAEMLSIDGVQAPTYIFAFGLLIFVGAVGQPQLLTKFLMLRDMTQLKWGAAVAGIAYAITTLFSVGIGLATRSMTLTGDAPELENIDDTAIWFLDSVTNPIVGGIALTGLLAAIMSSASSFITIGASSMMRDLPGAFGIKVVRELLWSRIASLTLVVLSVLLTLFLSQVVFLLGALGWAAFAAAIVGPVVMSIYWHRATATAATVTVAFAILGNMIITSLAARDIISVPAFMQVGGISLLVSIVLFYVVSLMTTNRHPDATLEFLYGGRSSVTDPRLSGGAAPTADTTTAASSQAGSTAASRRATSTAVSSRAASTERNDHV
>NZ_CP046567.1|WP_107757308.1|2917711_2919367_-|AMP-binding-protein
MPSTVQARPWRPPLGPEGFQWEIPDRFNIGAACTDAHARQSPAIVVDRGDDPPEVTTFGELGDRARRLITFLRDRGVGEGDRVAVMCAQSAETAVAHVAAYLMGAIAVPLSVKFGPEAALFRMGDSGAVAAVFDADCYARLAGELAELPELATVLVAGEMGPAAEAGALTALPLSVTDSADLAVVVADTGPDDPALLIYTSGTTGQPKGALHGHRVVLGHMPGVVRALDGFPEQGDVFWTPADWAWAGGLLDVLLPSLYSGVPVVASARRPSPETVEHILRRHGVTCSFLPPTILKMMRASEVDYSTTGLRAVFSGGEALGEAVAEWAREALGVQVNEIYGQTECNLIVGTCHSEFATPPGSMGRPTPGFDLVLIDEAGQPVAAGEVGEICVRLPSPNAFLRYWNAPDKTAEKTAGGVLHTGDLARVDERGSFWFSGRNDDLISSSGYRVGPGEIEDQILRHSGVEMVAVIGVPDELRGEAIVAYVVPAEGTSGTDELAREIQALVKERLAFYQYPREVRFLDELPTTNTGKIRRAALRNDHNRPTPEDPS
>NZ_CP046567.1|WP_107757309.1|2919482_2920262_+|enoyl-CoA-hydratase
MYEFLSLDVVDGLATVTLSRPPVNALSRGMQEELRAVAQEVSGRTDVDAVVFTGSDRVFAAGADIKEMRQMPYAQMLTEARELQSAFTAVAEIPQPTVAAITGAALGGGMELALCCDRRIAAERATLGQPEILLGIIPGAGGTQRLARLVGPAVAKELCLTGRTLTAAEALELRAVDEVVPDGQATARATEWARQFVGGPRMALRAVKEAVDRGIEVDLATGLSIERALFAALFATEDREVGMQSFIDSGPGKADFLGR
>NZ_CP046567.1|WP_107757310.1|2920275_2921991_+|GAF-domain-containing-protein
MAVDLALGLRDVLDAAAELAAAQDEDAVLHIAIRRARQLVGTDLAYVMLLDPERGDTYMRMAEGATSPRFDTIRLGMGLGLGGQVAEAMAPRWTRNYLADEQYTHVIDPIIREEGVKAILGVPVRTHGRLTGTLFTSDRGERDFTQDEITLVALLADQVSAALSAAERASRRRRELDETRDALDAERARSARLAATVALHERLTRLVVAGATVPEIVDLLVDIEGGTAAVFDLAHREIGAARSAEGPPAELLRRVLEEAAADTERMVTRQSGGHLVVVNPVVTGSDHLGYVTYASRGSVPAIGRVLERVSSVIALILLGHRARDEADNRVRGELLAELLSPGEHDLEAIGRRAALLGVDVHSDLIALVITPAEPRMTRALQTECRSLARADGGLVTTYGDRAVMLLPGSDAGATARDVATRLSPHSATVGASGPAGELVAVADHVERARRAAQLLVALGRAGEGAATEELGLYGLLFSEVDAEDVTQFIDRNLGPVRDHDRDRGSALMETLSAWFAADASPSATADRLYIHVNTVYQRLDRLDSVLGDGWRRGDRAMELRLALRMWELRGA
>NZ_CP046567.1|WP_107757311.1|2922937_2923555_+|signal-peptidase-I
MTAMQSATSAPHGSAPVRPVGAHRAPGRSVGSYLAGGLANLLAAGGVVAVGLVLAAVTMNITLIMFKTGSMSPTIPAGSVAVVKQIGADEIRVGDVVTVDRPGRLPVTHRVIEVHPQAPGEALIQMKGDANPNPDPGMYRVESVRKVLWSVPGLANAIVWAGNPLVLGSITLLAAVGVLWTFWPGRDEDDDSDAGADADDDEDAR
>NZ_CP046567.1|WP_107757312.1|2923551_2925189_+|hypothetical-protein
MTGLQHPVRALVAMFGALALVMTTALAVGTIRPTEAAWADRAMGAAEFGASPDGGRNFARSAAGYGALKPWLSGASAIGSVQREVTPSTTWIARSASPSSWSTESVGTFLSSVRASAETRTCARRDNRQPDDCRPLPDQPEAGAAASHAVSQVRNVDASALALLVRVPLVRTSSTPITATASCTPGEIGRAGLAGDPVTIGGNLFDSGDRVQIPAPGRQTTFVRDIGLYTYHGVLQHHHVVSNGYAMSQLRLYVEASGDVLGSQPWVLHMVLAHAECGASRPVTSAPVRPDVSWPAPLPEQSARMMSMRAAAVSESVATEGEPGRPVEAEPGQTVEAEPGRSPATDDVELPAPVVVEPLPGQATEADAIAGPEPTGPASSPTVEPGPRRPVSVTPGRWFTLVNRDGVELGSARIDGMVRTPGCGVELTLSIATSPESGPDRWSSLGPADVAELRSGGATRDARAVSSDCEGSAASTTTRLSPDREYEIVLAVQLDDSAKRAMLRPEGTAGWAFDLPPLTEVAVVATTATTTTSTTSAMPSAESEG
>NZ_CP046567.1|WP_156607256.1|2925252_2925804_-|helix-turn-helix-domain-containing-protein
MTPQLGARIGSAIKRERTSAGLSVSELARRSGVSKATVSQLESGGGNPSVETLWALGDALGVPFARLVDEDVEPVTLIRAADAPLIRSASADYVAALLSASPPHARRDVYLIRADPSGPKVSAPHVRGTVEHVILVSGSALVGPEAAPVELSPGDYLSYPGDAPHIFDAQHEGTTAVLISEVR
>NZ_CP046567.1|WP_156607258.1|2925869_2926577_+|branched-chain-amino-acid-ABC-transporter-permease
MRPLWRTPSPSASTASTAVTRPVSTAAAIATAIAVVGMAYGSAASAAGLPPWLVVLAAALVLSASSELVFVGVVASGGLLWIAVGAGLLVSLRNAVYGLSASAFLPDQRAPRLLWTHLVNDESVAVATAPQHPSRRFAAFRTVGIALLVAWPLGAAIGVGVGYVLPDPGQLGLDAAFPAVFVAIILAAVTRRTAAPAVAGATLATAAAPFVAAGLAPVLGLFGLLTAVRRRGDHA
>NZ_CP046567.1|WP_107757314.1|2926569_2926887_+|branched-chain-amino-acid-transporter
MPDPALILAVAALAVGVYAIRLAGVHVGRTRASLQLHRWCDPAVIVLLAGVAATATLYDGQAFAGWARIGGVASAAVLAALRAPLVVVVVAAVGVTAALRALGVH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP046567_1	1.2\|727967\|34\|NZ_CP046567\|CRT	727967-728000	34	NZ_CP013855	Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence	125533-125566	8	0.765
NZ_CP046567_1	1.2\|727967\|34\|NZ_CP046567\|CRT	727967-728000	34	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1093558-1093591	8	0.765
NZ_CP046567_1	1.5\|728174\|34\|NZ_CP046567\|CRT	728174-728207	34	NZ_CP014684	Kozakia baliensis strain NBRC 16680 plasmid pKB16680_3, complete sequence	4423-4456	8	0.765
NZ_CP046567_1	1.2\|727967\|34\|NZ_CP046567\|CRT	727967-728000	34	NZ_CP021355	Rhodococcus sp. S2-17 plasmid pRB98, complete sequence	707219-707252	9	0.735
NZ_CP046567_1	1.3\|728039\|34\|NZ_CP046567\|CRT	728039-728072	34	NZ_CP013855	Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence	125533-125566	9	0.735
NZ_CP046567_1	1.2\|727967\|34\|NZ_CP046567\|CRT	727967-728000	34	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1514102-1514135	10	0.706
NZ_CP046567_1	1.2\|727967\|34\|NZ_CP046567\|CRT	727967-728000	34	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1135823-1135856	10	0.706
NZ_CP046567_1	1.2\|727967\|34\|NZ_CP046567\|CRT	727967-728000	34	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1537471-1537504	10	0.706
NZ_CP046567_1	1.2\|727967\|34\|NZ_CP046567\|CRT	727967-728000	34	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	379506-379539	10	0.706
NZ_CP046567_1	1.2\|727967\|34\|NZ_CP046567\|CRT	727967-728000	34	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1442318-1442351	10	0.706
NZ_CP046567_1	1.2\|727967\|34\|NZ_CP046567\|CRT	727967-728000	34	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	6499-6532	10	0.706
NZ_CP046567_1	1.2\|727967\|34\|NZ_CP046567\|CRT	727967-728000	34	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1752886-1752919	10	0.706
NZ_CP046567_1	1.2\|727967\|34\|NZ_CP046567\|CRT	727967-728000	34	MF415411	Klebsiella phage KPN U2874, complete genome	261-294	11	0.676
NZ_CP046567_1	1.2\|727967\|34\|NZ_CP046567\|CRT	727967-728000	34	MF476924	Klebsiella phage YMC15/11/N53_KPN_BP, complete genome	261-294	11	0.676
NZ_CP046567_1	1.2\|727967\|34\|NZ_CP046567\|CRT	727967-728000	34	MF415413	Klebsiella phage KPN N54, complete genome	261-294	11	0.676
NZ_CP046567_1	1.2\|727967\|34\|NZ_CP046567\|CRT	727967-728000	34	MF415410	Klebsiella phage KPN N137, complete genome	261-294	11	0.676
NZ_CP046567_1	1.2\|727967\|34\|NZ_CP046567\|CRT	727967-728000	34	MG835858	Klebsiella phage KPN N98, complete genome	261-294	11	0.676

1. spacer 1.2|727967|34|NZ_CP046567|CRT matches to NZ_CP013855 (Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence) position: , mismatch: 8, identity: 0.765

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
ggtggacagcggcggcatcccggcccgcgccatc	Protospacer
************** *********  .  * *.*

2. spacer 1.2|727967|34|NZ_CP046567|CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.765

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
ggtggacagcgccgccaacccggcaccacgcatc	Protospacer
*********** ***** ******.  **  *.*

3. spacer 1.5|728174|34|NZ_CP046567|CRT matches to NZ_CP014684 (Kozakia baliensis strain NBRC 16680 plasmid pKB16680_3, complete sequence) position: , mismatch: 8, identity: 0.765

ggtggacagcggtgccatgccgagcgagccgatg	CRISPR spacer
catggacagcgttgccatgccgaacgacaggctg	Protospacer
 .********* ***********.***   * **

4. spacer 1.2|727967|34|NZ_CP046567|CRT matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 9, identity: 0.735

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
gatcaattgcggcgcgatcccggcgggaccgagt	Protospacer
*.* .*. ******* **********.***** .

5. spacer 1.3|728039|34|NZ_CP046567|CRT matches to NZ_CP013855 (Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence) position: , mismatch: 9, identity: 0.735

ggtggacagtggcgccatcccggcggaaccgacc	CRISPR spacer
ggtggacagcggcggcatcccggcccgcgccatc	Protospacer
*********.**** *********  .  * *.*

6. spacer 1.2|727967|34|NZ_CP046567|CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.706

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
tccggacagcggcgccgtcctggcggagcggcag	Protospacer
  .*************.***.******.* *

7. spacer 1.2|727967|34|NZ_CP046567|CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 10, identity: 0.706

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
tccggacagcggcgccgtcctggcggagcggcag	Protospacer
  .*************.***.******.* *

8. spacer 1.2|727967|34|NZ_CP046567|CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 10, identity: 0.706

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
tccggacagcggcgccgtcctggcggagcggcag	Protospacer
  .*************.***.******.* *

9. spacer 1.2|727967|34|NZ_CP046567|CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.706

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
tccggacagcggcgccgtcctggcggagcggcag	Protospacer
  .*************.***.******.* *

10. spacer 1.2|727967|34|NZ_CP046567|CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.706

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
tccggacagcggcgccgtcctggcggagcggcag	Protospacer
  .*************.***.******.* *

11. spacer 1.2|727967|34|NZ_CP046567|CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 10, identity: 0.706

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
tccggacagcggcgccgtcctggcggagcggcag	Protospacer
  .*************.***.******.* *

12. spacer 1.2|727967|34|NZ_CP046567|CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 10, identity: 0.706

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
tccggacagcggcgccgtcctggcggagcggcag	Protospacer
  .*************.***.******.* *

13. spacer 1.2|727967|34|NZ_CP046567|CRT matches to MF415411 (Klebsiella phage KPN U2874, complete genome) position: , mismatch: 11, identity: 0.676

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
ccgccccatcggcgccatccccgcggaaccaata	Protospacer
      ** ************ ********.*.

14. spacer 1.2|727967|34|NZ_CP046567|CRT matches to MF476924 (Klebsiella phage YMC15/11/N53_KPN_BP, complete genome) position: , mismatch: 11, identity: 0.676

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
ccgccccatcggcgccatccccgcggaaccaata	Protospacer
      ** ************ ********.*.

15. spacer 1.2|727967|34|NZ_CP046567|CRT matches to MF415413 (Klebsiella phage KPN N54, complete genome) position: , mismatch: 11, identity: 0.676

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
ccgccccatcggcgccatccccgcggaaccaata	Protospacer
      ** ************ ********.*.

16. spacer 1.2|727967|34|NZ_CP046567|CRT matches to MF415410 (Klebsiella phage KPN N137, complete genome) position: , mismatch: 11, identity: 0.676

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
ccgccccatcggcgccatccccgcggaaccaata	Protospacer
      ** ************ ********.*.

17. spacer 1.2|727967|34|NZ_CP046567|CRT matches to MG835858 (Klebsiella phage KPN N98, complete genome) position: , mismatch: 11, identity: 0.676

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
ccgccccatcggcgccatccccgcggaaccaata	Protospacer
      ** ************ ********.*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2306775 : 2360348

Staphylococcus_phage(20.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_107757906.1\|2306775_2307990_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.2e-39	34.6
WP_107756860.1\|2308494_2309358_-	hypothetical protein	NA	NA	NA	NA
WP_156607200.1\|2309546_2310362_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_107756861.1\|2310408_2311236_-	hypothetical protein	NA	NA	NA	NA
WP_107756862.1\|2311232_2311973_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.6e-13	25.4
WP_107756863.1\|2311950_2312346_-	GntR family transcriptional regulator	K4IBS0	Streptomyces_virus	1.5e-05	42.9
WP_107756864.1\|2312771_2313308_-	hypothetical protein	NA	NA	NA	NA
WP_107756865.1\|2313430_2314789_+	flavin monoamine oxidase family protein	A0A2K9L022	Tupanvirus	6.4e-08	22.1
WP_107758153.1\|2314889_2315861_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_107756866.1\|2315958_2317146_+	hypothetical protein	NA	NA	NA	NA
WP_107756867.1\|2317142_2318051_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_156607202.1\|2318017_2318158_-	hypothetical protein	NA	NA	NA	NA
WP_107756868.1\|2318442_2319651_-	sterol desaturase family protein	NA	NA	NA	NA
WP_107756869.1\|2319789_2322075_+	AAA family ATPase	NA	NA	NA	NA
WP_107756870.1\|2322088_2323642_-	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_107756871.1\|2324855_2325890_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_107758154.1\|2325946_2326948_+	iron ABC transporter permease	NA	NA	NA	NA
WP_107758155.1\|2327043_2328087_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_107756872.1\|2328083_2328983_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-12	27.2
WP_107758156.1\|2329171_2331160_-	hypothetical protein	NA	NA	NA	NA
WP_107758157.1\|2331273_2332521_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_107756873.1\|2332683_2334042_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_107758158.1\|2334064_2335384_-	cytochrome P450	V5UQK0	Mycobacterium_phage	1.4e-12	25.7
WP_107756874.1\|2335588_2335885_+	hypothetical protein	NA	NA	NA	NA
WP_107756875.1\|2335907_2337266_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_107756876.1\|2337311_2338772_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_107756877.1\|2338884_2340186_-	glycosyl transferase	NA	NA	NA	NA
WP_107756878.1\|2340276_2340918_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_107756879.1\|2341020_2344014_+	AMP-binding protein	NA	NA	NA	NA
WP_107756880.1\|2344352_2345620_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	8.5e-71	51.6
WP_156607204.1\|2345989_2346547_+	hypothetical protein	NA	NA	NA	NA
WP_095719468.1\|2346543_2346999_+\|transposase	transposase	NA	NA	NA	NA
WP_095719470.1\|2347040_2348051_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_156607206.1\|2348330_2350520_+	hypothetical protein	NA	NA	NA	NA
WP_107756882.1\|2350538_2354471_+	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	2.0e-25	21.2
WP_107755567.1\|2354874_2355645_-	AAA family ATPase	NA	NA	NA	NA
WP_107755568.1\|2355641_2357231_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.3e-56	33.2
WP_156607208.1\|2358106_2358601_+	hypothetical protein	NA	NA	NA	NA
WP_107758159.1\|2358710_2360348_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.4e-62	33.7

DBSCAN-SWA_2

3567730 : 3596829

Mycobacterium_phage(50.0%)

integrase,transposase

attL 3567718:3567777|attR 3595503:3596957

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3567718:3567777	attL	NA	NA	NA	NA
WP_107755580.1\|3567730_3569044_-\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	5.8e-107	49.5
WP_156607311.1\|3569058_3569913_+	AAA family ATPase	NA	NA	NA	NA
WP_107755582.1\|3570073_3571714_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.0e-63	33.8
WP_007633699.1\|3571710_3572469_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	8.2e-29	35.1
WP_107755580.1\|3572578_3573892_-\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	5.8e-107	49.5
WP_156607313.1\|3573964_3574414_+	hypothetical protein	NA	NA	NA	NA
WP_107757787.1\|3574410_3576189_+	ATP-dependent helicase	NA	NA	NA	NA
WP_107757788.1\|3576648_3578520_-	cutinase family protein	NA	NA	NA	NA
WP_156607315.1\|3578730_3579048_+	hypothetical protein	NA	NA	NA	NA
WP_107757790.1\|3581418_3582501_+	hypothetical protein	NA	NA	NA	NA
WP_156607317.1\|3582576_3584940_-	hypothetical protein	NA	NA	NA	NA
WP_107758287.1\|3584860_3585841_-	AAA family ATPase	NA	NA	NA	NA
WP_107757792.1\|3586121_3587972_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_107758288.1\|3587971_3588712_-\|transposase	TnsA-like heteromeric transposase endonuclease subunit	NA	NA	NA	NA
WP_107757793.1\|3589464_3591441_+	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	5.8e-34	27.4
WP_107757794.1\|3591437_3592688_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_107755580.1\|3595515_3596829_-\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	5.8e-107	49.5
3595503:3596957	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046567

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection