CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046584	Burkholderia pseudomallei strain B03 chromosome 1, complete sequence	2 crisprs	DinG,csa3,DEDDh,WYL	0	0	6	0
NZ_CP046583	Burkholderia pseudomallei strain B03 chromosome 2, complete sequence	4 crisprs	cas3,csa3,RT	1	2	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046584_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046584_1

68096-68237

Orphan

Consensus_repeat	Method
CGCGTATGCGGCGAACGCCGGCGCGACAAGCGTTGCAGCGCGGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046584_1

>merge|NZ_CP046584|1|68096-68237|CRISPRCasFinder
CGCGTATGCGGCGAACGCCGGCGCGACAAGCGTTGCAGCGCGGCGGACGAATGCCGTTCGCAAGTTCGCAGCGGTTCGCGCTGGAACGGCGTCTGCCGCGTATGCGGCGAACGCCGGCGCGACAAGCGTTGCAGCGCTGGCG

>NZ_CP046584|1|1|68096-68237|CRISPRCasFinder
CGCGTATGCGGCGAACGCCGGCGCGACAAGCGTTGCAGCGCGGCGG	ACGAATGCCGTTCGCAAGTTCGCAGCGGTTCGCGCTGGAACGGCGTCTGC
CGCGTATGCGGCGAACGCCGGCGCGACAAGCGTTGCAGCGCTGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046584.1\|WP_038760571.1\|72788_73148_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046584.1\|WP_004191983.1\|69673_69898_-\|lipoprotein	unknown	unknown	unknown
NZ_CP046584.1\|WP_009973210.1\|75599_76391_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239026
NZ_CP046584.1\|WP_038760579.1\|55524_58869_+\|exodeoxyribonuclease-V-subunit-gamma	unknown	unknown	gnl\|CDD\|335690
NZ_CP046584.1\|WP_038760570.1\|73166_73472_+\|pentapeptide-MXKDX-repeat-protein	unknown	unknown	gnl\|CDD\|131998
NZ_CP046584.1\|WP_004526507.1\|51130_52495_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NZ_CP046584.1\|WP_004193128.1\|70149_70362_-\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|182532
NZ_CP046584.1\|WP_004192878.1\|52491_52683_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046584.1\|WP_004193167.1\|50799_50979_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046584.1\|WP_080298606.1\|74498_75584_+\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|226602
NZ_CP046584.1\|WP_076802137.1\|66212_67424_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP046584.1\|WP_038760568.1\|73632_74457_+\|DUF1223-domain-containing-protein	unknown	unknown	gnl\|CDD\|369071
NZ_CP046584.1\|WP_009936979.1\|68459_69392_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP046584.1\|WP_102838283.1\|55012_55516_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
NZ_CP046584.1\|WP_076809535.1\|76618_76828_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046584.1\|WP_004193488.1\|65370_65775_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
NZ_CP046584.1\|WP_004534567.1\|52679_54956_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372320
NZ_CP046584.1\|WP_004191162.1\|50683_50803_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046584.1\|WP_038760573.1\|70585_72517_-\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NZ_CP046584.1\|WP_038760575.1\|62677_65374_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|236783

Protein	Function_ID	Function_description	E-value
NZ_CP046584.1\|WP_009973210.1\|75599_76391_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239026	cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	1.29077e-90
NZ_CP046584.1\|WP_038760579.1\|55524_58869_+\|exodeoxyribonuclease-V-subunit-gamma	gnl\|CDD\|335690	pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit. The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This family consists of two AAA domains.	0
NZ_CP046584.1\|WP_038760570.1\|73166_73472_+\|pentapeptide-MXKDX-repeat-protein	gnl\|CDD\|131998	TIGR02953, conserved_hypothetical_protein, pentapeptide MXKDX repeat protein. Members of this protein family are small bacterial proteins, each with an N-terminal signal sequence followed by up to 11 imperfect repeats of a pentapeptide. The pentapeptide repeat usually follows the form Met-Xaa-Lys-Asp-Xaa.	0.00113724
NZ_CP046584.1\|WP_004193128.1\|70149_70362_-\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|182532	PRK10540, PRK10540, osmotically-inducible lipoprotein OsmB.	5.81885e-06
NZ_CP046584.1\|WP_038760573.1\|70585_72517_-\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NZ_CP046584.1\|WP_080298606.1\|74498_75584_+\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	6.25552e-56
NZ_CP046584.1\|WP_076802137.1\|66212_67424_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	3.47279e-53
NZ_CP046584.1\|WP_038760568.1\|73632_74457_+\|DUF1223-domain-containing-protein	gnl\|CDD\|369071	pfam06764, DUF1223, Protein of unknown function (DUF1223). This family consists of several hypothetical proteins of around 250 residues in length which are found in both plants and bacteria. The function of this family is unknown. Structurally it lies in the Thioredoxin-like superfamily.	2.71619e-68
NZ_CP046584.1\|WP_009936979.1\|68459_69392_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.06538e-12
NZ_CP046584.1\|WP_102838283.1\|55012_55516_-\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0.000620612
NZ_CP046584.1\|WP_004193488.1\|65370_65775_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	3.43394e-65
NZ_CP046584.1\|WP_004534567.1\|52679_54956_-\|hypothetical-protein	gnl\|CDD\|372320	pfam12805, FUSC-like, FUSC-like inner membrane protein yccS. This family has similarities to the fusaric acid resistance protein family. The proteins are lodged in the inner membrane.	5.92051e-82
NZ_CP046584.1\|WP_004526507.1\|51130_52495_-\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP046584.1\|WP_038760575.1\|62677_65374_+\|AAA-family-ATPase	gnl\|CDD\|236783	PRK10875, recD, exodeoxyribonuclease V subunit alpha.	1.53976e-72

>NZ_CP046584.1|WP_076802137.1|66212_67424_-|EAL-domain-containing-protein
MRYHDVTLASAFQPVISITHKRVVGYEALARATDANGAPISPDTLFARAQARGETILLDRLTRCLHVANFAAQDTGACWLFLNVLPQMFDAGIAPGAFIEALCAHFALPPTRVVLEVIEQPSRNEVALARTIDMIQHGDFLIAVDDFGTGFSNFDRIWQIKPDIVKLDRSILERSLAASDAHRIIHHLVTMLHHAGTMVLAEGVENEDALQILMDADVDFVQGFCFGRPAPSLEHARRAAPARIEAAWRRFAERTKARCGDVVHPGFDTIERIMLTGAADYAQTRNLRDAAQRLLTSPIVRRVFVAEANGEQVEPSVAIETPEAPSATARRLAPLLPELHCNWSRRAYFQRAIAAPGRVALMGPHFSLTDGRDCYTAAVAIHLGTTLKVFCVDFDFSSYGDGR
>NZ_CP046584.1|WP_004193488.1|65370_65775_+|aminoacyl-tRNA-hydrolase
MTLRYAFSPDEVELTAVRAQGAGGQNVNKVSSAIHLRFDIRASSLPDDVKARLFARADQRITREGVIVIKAQEYRTQEKNRAAALARLDTLIRSAGVTPRKRVATRPTRASKERRLAEKGRRSEVKSGRGRVVE
>NZ_CP046584.1|WP_038760575.1|62677_65374_+|AAA-family-ATPase
MSVVDERFAWTGGLADRLPEPADFGLALAEGFARRIGMLSRRVGASAAAARWAARAAFAASRATAAGHVCVALRALAQRYDEPYDDVRAALAASGVTAFDGIVRGGECPLVVDRDGRLYLARYFEYETRLANALVERSRCGGAPAGGADALSPDALGERLVRYFGPQKERGVDWQRVAALIALTGRVTIVSGGPGTGKTTTVVGVIACLLDAHPELRIALAAPTGKAAQRMQEALHARAGSLPAELAARLPRTSCTLHRLLGGGPGGRFAHHRDNPLPYDLVVVDEASMIDVALAAHLLDALAPNARLVLLGDKDQLAAVEAGAVFAELSARPAFSPATCATIARALGVGEAEFVAALPDGFVVQAGGAERVADARAAAADMDAAARGTAGAAAAAARTTAAAAARMTMAAAAATGAAPESAAQRAPAPHAGRRGGGRASNRTVDDAQGSLFAFDDDAFGVGTSGGEPGAGAQGAGRRDGGAPSPDGPHAGRRDGGASPGVAHSRRDAFDARARSGPADVSDLENAARAYAPAGAAGPADSPADASFVEPAAWIEADELAWLDNAVFSFSEGASANAEADGRRSAAATATDAGARTAPPVAREATAPTPRETARSDGSAVAPLTDCVVWLERNYRFGLDSPIGRLSLAIRRGAVQDALDALSTQDDAAARFSDDGGATLSAATVEQLARGFAGYAAALRDALATPEPDALPLFDVLNRFRVLCATRTGARGAEEVNARMAAEVRRAVRVPLALGAHWFAGRPVMVTRNDYALGLFNGDIGIALPGARGALRVWFRGADGRARAVSPAALPPHDTAFALTVHKSQGSEFDDAALILPASFNRVLSRELVYTAITRARARVQVIGSRAVLALAIATRTARDSGLAARIADALRARQEGAR
>NZ_CP046584.1|WP_038760579.1|55524_58869_+|exodeoxyribonuclease-V-subunit-gamma
MLHLFYSNRHETLADALLDDLAFASDGAGPWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLAQWLWAQIGEVLTVPAHSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTYRPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLREARAFDPDVIARARVKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDIVTAARAESLDAADRLDYQEVGHPLLAEWGRQTQAQLHMLHELTESAAASDASRYADNPAPTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADLSLAPSDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPERDVGAPELVEWLRADAVAARYGIDATALETVQTWLAASGARRGLAPDAAEPPNPAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTDDLDGFARRIARDLTPQGWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEGAAGAALPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLARADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDELLDHLAAASAGPDAPPDAVDAARRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLLAEGARAQARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVDTEPFELDYAGSDALAERVLPLLIETADAAAFEHALRVADASPEVPGGATGAVRRDHALDALAQLAGNVRRALADGATRVPFAFDVAPAWPAASDARWFGEHDAALAAAATREPLRLHGALARLTAAGQVIYRYARPGARDYLAAWLAHLVYCAIDPGGPRRTLWFGSGDTFEFAPVAAPLEQLAPLAALFRAGRRMPLAFFPRSAWALVSESESKAAGVWINDRVAGEADDASLALAWRGANPSLDEPFGALAHLVFDPLVEHLRRAS
>NZ_CP046584.1|WP_102838283.1|55012_55516_-|hypothetical-protein
MKDAGGARPVEKPRIAKGDGRENLADRPGARAPRSRGHRRDSRLVAAAGPRATGRARRRQRLPQPLARAASANGRIASFGSLRERHHAPQSRGPLAALNRRRARRSESERRTPNAERRTPNAERRTPNAERRTPNAERRTPNAERRTPNAERRTPAPKHGFRDAEIR
>NZ_CP046584.1|WP_004534567.1|52679_54956_-|hypothetical-protein
MRYSVEIRKFFYSQYFFGGLRIALGVSLPAVLSLAVLHDRELGFTIATGALGACVVDMPGPLKYKHNEMLACSVIGFFSALATGLATPNIFALWLTIVPLTFALSLIVVYGNRWPQISFATLFMMVMTLEEKFTPLQALVNASWILAGGLWYTYWATIVSRWQARRIEQQALAESLFACASYLLARADFYDLDADLDECYRNLVARQITAVETQETARDIVLRNLPKLRRGKLDPGRTMMFNLFINSVDLHEMFVGAHTDYPLVRSTFGGSDLMIFYRDLIRKAAADLEEIGFAVLENRLPHSRISVKAELRAIEYEIELMRKKQFAATHPEAYAAVLATFRRIWSATRLIDKMRRNLSGSADAQRTELKIDKALTRFLQKRRMSPLLIFSNLNMGSPSLRHALRVTIAVAVGFWLGRLLPLTNAYWIVMTSIIILKPGYSLTKQRNAQRIVGTLIGCAASLALIYTVHEPHVLIAIMFGSMVMSYSLLLFNYAASVVFTSSYVLLLFHLLAPGNMRIIGERAIDTVVGCMIAIAASRLFPYWEYRAIGKLVADALATTRKYFEATWRAGRGKAAPAVPAADGAAAVPAVAAVVDAVAPGLDGDYQYRLARKNVHIAFANLGQAFQRMMLEPKAHQKFVPELNDLLVQTHVLGAQITAAAPLLRHACEQGNPPALERGMAAVREHLEQAEAGVPPPANQAETSKQLTRELDSMVVDAERSDAGADLAHDLKVLAHQCKQMLASSLLIRKDASVIRLPE
>NZ_CP046584.1|WP_004192878.1|52491_52683_-|hypothetical-protein
MSRPPPPFLSTVSRRARTQGFPDYCPRASIGMIYPAPSCLYNFSSASAGPHRPADDTNHSETR
>NZ_CP046584.1|WP_004526507.1|51130_52495_-|amino-acid-permease
MKNLQRHLSARHIRFLALGSAIGTGLFYGSASAIRLAGPAVILAYIVGGAAVYMVMRALGEMAVREPVPGSFGHYATENLGPFAGFVTGWTYTLEMVIVAIADITAFGIYMGFWFPHVPQWIWVLAIVAIICGLNLCHVKVFGELEFWLSIVKVGAIVAMIGGGAAILFTGMRLGSGGAPSLANLWSHGGFLPNGVGGLVASLSVVIFAYGGIEVIGMSAGEAKEPERAIPRAINAVPMRILLFYVLTMIVLMSIFPWTGVGANGSPFVQIFSALGVRSAAEILNLVVISAAISAINSDIFGAGRMMYAMALQGQAPRALAAMSARGVPWVTVLVMAGALLVGVVLNYLMPKDVFLMVAASATFATVWVWLMILLSQVAMRRRLGAAEVAALKFKVPFWPVGPALTIAFMAFVIAMLGYFDDTRVALFVGAAWLAILALVFYTRIRPRLAAVAR
>NZ_CP046584.1|WP_004193167.1|50799_50979_+|hypothetical-protein
MNDPRSKKNPVFGVAILIVVVIALVIGTILYNAISQKHEYDEAHPHAASAASAASAQHG
>NZ_CP046584.1|WP_004191162.1|50683_50803_+|hypothetical-protein
MRIARKKTDESRRAQRTAVRMRLRVECRLDEFLMERDRR
>NZ_CP046584.1|WP_009936979.1|68459_69392_-|DMT-family-transporter
MNLKNALLLIVLAALWGASFLFIRVGVAEFGVAPLMALRVGIGALFLVALMLTRYAPRELIALLRQHAWPLFVVGLLNSAAPFCLFAFAELTLSAGVTSVINATTPLWGALVAYLWLKDSLSLPRALGLVIGFAGVLTLVWDQVFSPHGANPASPATAALAAAAALGATLLYGIAANFTKRKLTGVDPLVSATGSMVGATILLLPFALATWPAAPVSAHAWGSVLALGIACTGVAYFIFFHLIAHIGPARAITVTFVIPVFGILWGALFLGERVSFAMLEGCVIVLLGTALATGAIRRIPGVRPQRNETA
>NZ_CP046584.1|WP_004191983.1|69673_69898_-|lipoprotein
MNKTLVAAALASVALAGCYYPYGYYPASGYYAAPVQTAPVYVAPAYPAYYYPAPSLSLNFGYWSGGGRGYWRHH
>NZ_CP046584.1|WP_004193128.1|70149_70362_-|glycine-zipper-2TM-domain-containing-protein
MKSIRRIGVCAMLIATMASLSACDTMTTRQRNAAIGAGIGGVAGAAIGGNALSTIGGAAAGGLVGSQVGK
>NZ_CP046584.1|WP_038760573.1|70585_72517_-|phosphomethylpyrimidine-synthase-ThiC
MNANPKFLSADARVDAAAVAPLPNSRKVYVTGSQPDIRVPMREITQADTPTSFGGEKNPPIYVYDTSGPYTDPDAKIDIRAGLPALRQRWIDARGDTETLAGLTSDYGRERAADPATAELRFPGLHRHPRRAKAGKNVTQMHYARQGIITPEMEYIAIRENQHRAEYLESLKASGPNGAKLAAMMGRQHAGQAFGAAAFGANAPAEITPEFVRDEVARGRAIIPANINHPETEPMIIGRNFLVKINANIGNSAVTSSIGEEVDKMTWAIRWGGDTVMDLSTGKHIHETREWIIRNSPVPIGTVPIYQALEKVNGKAEDLTWEIFRDTLIEQAEQGVDYFTIHAGVRLQYVPLTANRMTGIVSRGGSIMAKWCLAHHKESFLYEHFEEICEIMKAYDVSFSLGDGLRPGSIYDANDEAQLGELKTLGELTQIAWKHDVQVMIEGPGHVPMQLIKENMDLQLDWCKEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGTAMLCYVTPKEHLGLPNKDDVKEGIITYKLAAHAADLAKGHPGAQVRDNALSKARFEFRWQDQFNLGLDPDKAREFHDETLPKDSAKVAHFCSMCGPHFCSMKITQDVREFAAQQGVSENDALKKGLEVKAVEFVKSGSEIYHRQ
>NZ_CP046584.1|WP_038760571.1|72788_73148_-|hypothetical-protein
MIEEPNSRDAKADMTPARKNFSGSALAPPDNDRAAARARKQTRASKPRAHADARPAHDRRAIDASSAHGPATPMRGATVPARAARTRLCGANPVRAASRRRGAISATDRGRARNRSVPC
>NZ_CP046584.1|WP_038760570.1|73166_73472_+|pentapeptide-MXKDX-repeat-protein
MKRNLIAFACVAGFALAAPFAHAQNDAMSKDGMGMSKDAMSKGAMSGDAMSKDAMSKDAMSKDRMGKRHDHMAKGGMKAGSMSKDAMKEPMSSDKMSPMSN
>NZ_CP046584.1|WP_038760568.1|73632_74457_+|DUF1223-domain-containing-protein
MSIDMSISFSVSLRAVAAALSLAAAGAAQAAADGACMARSPDGRQALVELYTSEGCSSCPPADDWLARLAARRAALRVVPLALHVDYWDGLGWADRFAQHRFTERQHALAARGGGRFVYTPEVAVDGRELRDWRDADAFGRRVVATAAEPARVGIALAAKRRAGALDVALSVTPRAGAPRALDAYLALYENGVESQVSAGENRGATLRHERVVRQWIGPLAATADAHASLDVRRALPLPANLRAADAARYGVAAFVEDPATGDVLQALDLPLCG
>NZ_CP046584.1|WP_080298606.1|74498_75584_+|cytochrome-b/b6-domain-containing-protein
MSATPTTSASTTAMAGARASGAADAPARAPTGADVDAGATAWADATANATANATTDPTTDPTIDATTDAMANVTTDAATRVTANPPIHETANVPASTAAAATTEAVAGARAGAALDAAHPGATQTMSQTMAQTMAQTMTQAGTEAASPAGTDAAASGTCITRATRARRPIHPLWVRASHWLNALAAVTMALSGWRIYNASPIYAGFVFPRGATLGGWLGGALQWHFAAMWLLFFNGVFYLTMGVATGRFTRKLLPLSASGVARDLRDALRGRLSHDDLSVYNALQRAAYVAAIADLALLVLSGLVIWKSVQFPLLREWLGGYDRARVVHFWAMAFLVAFFVVHVAMAALVPRSLLAMLRGH
>NZ_CP046584.1|WP_009973210.1|75599_76391_+|molybdopterin-dependent-oxidoreductase
MSENDRKKRENDIARIDRASLLIDVRKSLALPSRRLFGKRMLTLGGLAMLTGCTLRDDASADDFLEKVSRANDRVQAWLFGPTRLAPTYAEADITRPFPFNAFYGIDEVPRVDADGFRLAVSGLVTGQRSWSLPALYALPHAEQITRHICVEGWSAIGRWGGTPFREFLRRVGADTSAKYVGFKCADDYYESIDMATALHPQTLLAFEYDGKRLPPEYGFPMKLRMPTKLGYKNPKHIVEIFVTNAYPGGYWVDQGYNWFGGS
>NZ_CP046584.1|WP_076809535.1|76618_76828_-|hypothetical-protein
MKRRAVERRAMQPPASGAGKTGMTGNGGVRNDRSERAAANMTEGDERTRRRTRMMTCAAWRPHFVSIMH

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Crispr_ID: NZ_CP046584_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046584_2

2549544-2549647

Orphan

Consensus_repeat	Method
CGAGGTACCCGTACCCAGTTCGCGAGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046584_2

>merge|NZ_CP046584|2|2549544-2549647|CRISPRCasFinder
CGAGGTACCCGTACCCAGTTCGCGAGGTCGTCTGCGCCAGCCGAAAATTTTTCGTGAGGTTGAGCAAGCGAGTTTACGAGGTACCCGTGCCCAGTTCGCGAGGT

>NZ_CP046584|2|2|2549544-2549647|CRISPRCasFinder
CGAGGTACCCGTACCCAGTTCGCGAGGT	CGTCTGCGCCAGCCGAAAATTTTTCGTGAGGTTGAGCAAGCGAGTTTA
CGAGGTACCCGTGCCCAGTTCGCGAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046584.1\|WP_080297038.1\|2556717_2557521_+\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238874
NZ_CP046584.1\|WP_038761784.1\|2540599_2541001_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP046584.1\|WP_044584019.1\|2550504_2551791_-\|DUF4102-domain-containing-protein	unknown	unknown	gnl\|CDD\|170049
NZ_CP046584.1\|WP_080297039.1\|2555878_2556721_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046584.1\|WP_004202927.1\|2560381_2561500_+\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NZ_CP046584.1\|WP_156890283.1\|2559705_2560044_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046584.1\|WP_144402330.1\|2545906_2546992_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046584.1\|WP_038761786.1\|2541833_2544905_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|380293
NZ_CP046584.1\|WP_024430280.1\|2538839_2539157_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP046584.1\|WP_004545329.1\|2557603_2557891_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046584.1\|WP_144402329.1\|2550031_2550493_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046584.1\|WP_004202928.1\|2552319_2553219_+\|cytochrome-c	unknown	unknown	gnl\|CDD\|225784
NZ_CP046584.1\|WP_004546085.1\|2559245_2559599_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046584.1\|WP_044362991.1\|2539536_2540280_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP046584.1\|WP_080298454.1\|2544888_2545566_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046584.1\|WP_144402357.1\|2547684_2549118_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046584.1\|WP_038761783.1\|2537922_2538840_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374474
NZ_CP046584.1\|WP_038761785.1\|2541334_2541841_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379171
NZ_CP046584.1\|WP_076804979.1\|2540295_2540475_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046584.1\|WP_004524472.1\|2553541_2555629_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|130146

Protein	Function_ID	Function_description	E-value
NZ_CP046584.1\|WP_004202928.1\|2552319_2553219_+\|cytochrome-c	gnl\|CDD\|225784	COG3245, CycB, Cytochrome c5 [Energy production and conversion].	1.10773e-20
NZ_CP046584.1\|WP_080297038.1\|2556717_2557521_+\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238874	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	2.81945e-68
NZ_CP046584.1\|WP_038761784.1\|2540599_2541001_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.000236326
NZ_CP046584.1\|WP_044362991.1\|2539536_2540280_-\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	8.93878e-46
NZ_CP046584.1\|WP_038761785.1\|2541334_2541841_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|379171	pfam13411, MerR_1, MerR HTH family regulatory protein.	0.00293075
NZ_CP046584.1\|WP_004202927.1\|2560381_2561500_+\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NZ_CP046584.1\|WP_038761783.1\|2537922_2538840_-\|hypothetical-protein	gnl\|CDD\|374474	pfam16289, DUF4935, Domain of unknown function (DUF4935). This family consists of uncharacterized proteins around 350 residues in length and is mainly found in various species, such as Prevotella, Pseudomonas, Leptospira and so on. The function of this family is unknown.	2.0148e-18
NZ_CP046584.1\|WP_004524472.1\|2553541_2555629_-\|AAA-family-ATPase	gnl\|CDD\|130146	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP046584.1\|WP_038761786.1\|2541833_2544905_+\|N-6-DNA-methylase	gnl\|CDD\|380293	NF033451, BREX_2_MTaseX, BREX-2 system adenine-specific DNA-methyltransferase PglX. This protein, PglX, is a site-specific DNA methyltransferase associated with PGL (phage growth limitation), a type 2 BREX (bacteriophage exclusion) system. The phage resistance appears not be restriction, but does manage to inhibit phage replication.	5.70407e-15
NZ_CP046584.1\|WP_024430280.1\|2538839_2539157_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	7.67238e-10
NZ_CP046584.1\|WP_044584019.1\|2550504_2551791_-\|DUF4102-domain-containing-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	7.13659e-67

>NZ_CP046584.1|WP_144402357.1|2547684_2549118_-|hypothetical-protein
MPSVPGAIAAPADYKNDLQVFEGNLMTFIGQHGLPTQNVLVPVAERVKVFGNVEDVLNRLSAEHKGKSVYVSKFIAAAAAGLFDSALNYLWDETIFELRKRIVRYDLEYFFDIAVTNPDKRKKLSTEDDLAKLDDNELVRGAAEMGLISELGFKHLDFIRYMRNWASAAHPNQNQITGLQLIAWFETCVTEVITLPETNSTAQIRALLANIRAHQLDAMGAKQTSGFFPELTSEQCNSLMSGFFGIYTNDTTLPLARDNVKQLATYLWPFVTEATRKTFGVKYGQFTANNDAAKAKWAREFLDLVGGASYIPDSIRAAEIGTAIDELLAAHRGYNNFHIEPSFARRLESLVGDKGDVPPVVAGRYVDALVEVYLTNGNGIAWSAEPVYQRLLGKFDSSQALLAALSFRNRDIASKLQFPLSESKYREIVALAKTKVSSPQGLDILKTIEDYKAPLQHMRDETKLMEKVNAITQSLGA
>NZ_CP046584.1|WP_144402330.1|2545906_2546992_-|hypothetical-protein
MKYVVMGVRMQMVFSRLGDRLVYGLKVFDDPEKAATLWSIVERKEELAALAALSTGEPCQVFLFNEIAVCVGWRETTINIPLSKFQMLSSGVETEAVDYSSLSQQVSALLDRPSLDDVPGNTVVIDIDGSKDWRPSINHFITNNASASSLDLFDRDEGNQQEQIGIWLTDSLHPSGSHHSPQIPKGSQTRELTDILLSYDHGSMLIESKALSIFPRDVLPSRARLAKDISGHVKKAVSQLRGGIRKIKAGVPVMNFEGETIEVERTRPMHAIVLIPDLDLIEDQHQYDSAFMAEFMEATGGFLHLLDVAELLRVVQAAEMIAARGTTTTPMMAFDYYLIERAKTALQAGSLCFEMLLRFEG
>NZ_CP046584.1|WP_080298454.1|2544888_2545566_+|hypothetical-protein
MHLSPDLPVGRPSFDLSEDQLATVVDLLCRGVATARPLLQPGMLEVPITIHVKKAMRRLKKELGLSNLEITGEFELLDLSNDDPEVLGRIDIILRFLHQFGDEEAYLGIECKRVGHGESALNQRYVTQGVDRFVTGQYATGHHWGIMLGYVLKLPSAAMVNGIDARIRTTYGEAAKLNDLDSHADALSVHSGDLAQGADGHVIRLMHIFVDTTPAAGVMGAELSA
>NZ_CP046584.1|WP_038761786.1|2541833_2544905_+|N-6-DNA-methylase
MGSAAFTKALTATGYLLSDGGPAPGLARAGEDAGARLRAVLSDSRVGLQAEAVFSAQSVPTAIFKDAGDEAPSEQQIAQWHEAAWNVGVAPLLWIITPTDVRLYDCYASPAKESPQQIATEPLDVFSLQAEDRLRSLDAMCGRYATETGAFWSSAIGKRIDRRHRVDRQLLDEINALEDRLTGLPPANGRPLPGEEDEAQASRDFAQRLIGRCIFTSYLIDRGIAQPFLPQEFSADVADMFATVDSAFRLFQWLRSTFNGDLFPMDDPGAEHQRFSDAHLDLLRDFVEGRSLLTGQGRLFRFRFDAIPVDLISSIYQQFARSSAADDAHTQGLHYTPVELVHLTLDPVFEALPTSARVIDPTCGSGAFLVEAFRRLVWKRTQGKAASRSIVRDVLYKQLYGIDINRSALGIAAFSLYLAALELDEEPVQDIQDLKFHRLIGTTLFEADTVHDDLPSLVTERPFDAVVGNPPWTFVKKAAASRKRKAADIQSSRPRRSPDQEFLWVASRLAGDAGRIGMIMKASPFFSKDVHAIQSRQALLSTLHPVALVNLSALRKEGLFPDATGPALLFFGRCALMDQQDRLLLGSIPWTPNFRRNGVFHIGPGELRSVSLPRVLRTPPMLKAATFGTARDGWLIEKLERTFPTLEKILDDAGLNIRGQGFQVNGGDDNEPPGHYDQLRVLTPDNYTPFRIDGRALPHFEHESLHRARNPAIFKGPLLICPEGSFLNTTGRYSSTVSSTDLLYTESFFGVSFAEHELDAALILSAILSSSLTTFQLAYGGGAWGLERTKVKPNDLLALRIPDLTAAEPSLLQAVRDAERRLARAPEDPESLEALDRSVYDLYDLERDEALLASDSVMRARMLLFEGHAQRLAFTRRPSTAELIAYAGEVVHTVNAYLRARGKRHLEAVIYPHRIAVGNAIDGTPGVDAVRFAMVAGAPPNVPCVHQGSDVEIDRLTPLLRGQVSSAVPPYLNERRQLRIYDESALFILKPSELRYWTRTAGLNDGDAILADHWIKGFHASVT
>NZ_CP046584.1|WP_038761785.1|2541334_2541841_+|MerR-family-transcriptional-regulator
MQLVPTRDATRLTGLSTEQLREWTSRRALIPPDVKPKGHGSPARYSWQTILLLRLAVVLRDRFKMELHAHRDLFAELGAGLARTSFLSLWGKSLALYGGTQWGLIDPRDEGVTIDDCIVLRLDPHLQQLSDSFALPKPAAPGQFQLFPALGVMVEAAANNSTGRRRHG
>NZ_CP046584.1|WP_038761784.1|2540599_2541001_+|helix-turn-helix-transcriptional-regulator
MNISSLIELAKDAAGSYGELAERIGRPASRISDWKAGRRKPDAADIMLLAEVAGRPVFETLAEIEMELDTERSSVWQRALGNLRAAGVAATVVLGATAVVSLTSKPADAAEKAQENKDLAPAGIERIGERLVR
>NZ_CP046584.1|WP_076804979.1|2540295_2540475_+|hypothetical-protein
MRLTWAALTIEARLLIAIALVTVFVAFRSDRRRVQLRRQKELDPIKRAIYNPKQFRRPR
>NZ_CP046584.1|WP_044362991.1|2539536_2540280_-|site-specific-integrase
MRELKRGDVQRYVSARLADGVCESTVKRELRLLSAAINFVRTEHDYPELANPVQSLGLDGGESRVRWISRSEATALILAAGAVARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSHFRLECEHTKNGKRRLVPLNSGALLALRDQRDWVARHCAGSEWVFASSSGRRVGNLQKGFVAACARAGIENFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLPL
>NZ_CP046584.1|WP_024430280.1|2538839_2539157_-|helix-turn-helix-transcriptional-regulator
MKRASAEGFNLIQHTVDDTEHLLAKPGVRAAYDALEDEYMALRAILAIRHEAGLTQAQVAERMGTTASAVSRLEASLSSEKHSPSFATLRKYAAACGKRLVISFA
>NZ_CP046584.1|WP_038761783.1|2537922_2538840_-|hypothetical-protein
MVPKAREDSCKKWETKMAGGIQKLLFIDTNIWLDFYRARNEAYLGLLPPLETLSNRIIVTHHLESEYKRNRQSVILESVSELKNKMPDKVPSIGVLATTREFGMLKRDIDNARKRIKNLQGKLISILERPAEKDQIYQVVHRIFHRDHPLVLTREERHNNARKDIRDRAYRRFMHGCPPRKRNDTSYGDAINWEWMIDCAIQANAELVIVSRDGDYGSTYDSKSYINDHLRQEFSNRVSQKRELLLYTRVSDALKHFHVAVTHAQEKAEADLVEQMALGDKFLSQSQPMQDIASIGDNAMENGLE
>NZ_CP046584.1|WP_144402329.1|2550031_2550493_+|hypothetical-protein
MPNAKSFTRTQRDTAAKNLAALPEKPENEHRLSTRDMVKSIQAHILAAQKKGYTFEEIADVISKAGVSVSVGTLKYAMRVVAEEKKHSQVSGGSTRTGNAQSSRKKSGLASPVRNGQSHVAPRLRESEKMNKPSITPIRGTFGFPINPDTENL
>NZ_CP046584.1|WP_044584019.1|2550504_2551791_-|DUF4102-domain-containing-protein
MGQLTDLKVKNAAHCEKEYFLPDGDGLYLRVRPTRKVWVYRYTRDGRSIKLSLGRYPIVSLAAARRKAREEMKRREDGIDPQKARREKWEQEQAARLNTFELVAREWHKASEKDRQWSAGYTEKIIRYLELHVFPWVGRLPVEEIKPTEVVRCLHRIKERGNLETAMRVRETIQHVYQYAVDTGVLEPAKNFVNGRTGGLPAVRSRHYPAITDPQQLGQLLRDIRAYNGHVITRAALQLAPLLFQRPGQLRFAHWEDIDLDDAVWVCPPEKMKMREWKKRDSRTPAHVVPLPSQAMEILRDLHPLTGPKGPIFRSVAKRSEATRYMSENTVNSALRTLGYDTKEQITGHGFRATARTLIREYLGWDREVIERHLAHASSEELGDSYDRATFLEQRREMVQDWADFLDELAAGNVPKPARTLRLVSRTA
>NZ_CP046584.1|WP_004202928.1|2552319_2553219_+|cytochrome-c
MSEAPHGAPIKTPGQLIAVVIASFVIPIAIIVLFATYANHAFRTGAGTDGLSDEAVAKRIAPLAQVDIKDANAPRVYKTGEEVYKAVCVTCHGTGAAGAPKFGDAAAWAPRIAAGYDEVLHLALTGKGAMPPRGGTNPDDYSDYEIARAVVYMANQGGAKFAEPAQPAANAAPASGAAAASAPGASDAAANSQAAAAMAAIAALPKAGEAPAAGANAESSASAGKALYESTCQACHATGVLNAPKFGNKADWAPRLKDSMDTVYNFALHGKGAMPPKGGSNASDADVKAAVDYMVNAAK
>NZ_CP046584.1|WP_004524472.1|2553541_2555629_-|AAA-family-ATPase
MSAGLNSAQSEAVRYLDGPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERVGKLLEGKTLTTPGKEGRKVPVNQLTVCTFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQIGTTDKGLIRKIQTIISLWKNGLVAPEEAMTIAANEDEHQAALVYRNYVATLHAYQAVDFDDLIRLPTELFARNEPVRDRWQNRLRYLLIDEYQDTNACQYELLKLLAGPRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPKLHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEHGMGDSITVTPCNDEEHEAESVVFRLSAHKFERRTQFRDYAILYRGNFQARVFEQVLRRERIPYVLSGGQSFFDKAEIKDLCAYLRLIANADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSARQVEPLRIFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNVLEFLEWLKRKGTKPEAEQAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKEEDPDAVRLSTVHASKGLEYPHVFLVGVEEGIMPHSGGSDDGPIDDERIEEERRLMYVAITRAQRSLHLNWCKKRKRARETIVCEQSRFIAEMGLDEAPPPTPEEAPMTPKDRLASLKALLQK
>NZ_CP046584.1|WP_080297039.1|2555878_2556721_+|hypothetical-protein
MARRSDSMPLLPDAPAMLALKLTLVPLFLLLVSIAGRRWGPSIAGWLAGLPVVACPILFLVAVERGPAFGAHAALLSLSAIAASEAFSFAYAWTCRRHRWPLALAAGLAAWAAAASALARLPATPPAATAVAFAATCFGQSCLPRGATLAPRAPLSHADLAGRLAAGAALALAVTSLAGALGPAWSGLFAVFPLLGSVLAVSSHRAHGPDFVVPLLRGMVFGRFSFAAFCLCVALTLPRQPALQAFAEAAALSVAVQGATKRLAARGPRPTALAQTATPD
>NZ_CP046584.1|WP_080297038.1|2556717_2557521_+|SGNH/GDSL-hydrolase-family-protein
MTRARRYHERTLSISTPVTMERHMGYHFATAALGPLLLAQGRHVRRVTPRLAEADGPRGGADGAGPPLRLLVLGDSAAAGVGVASQSDALAGQLVRALAPFHRVEWRLLARTGATTRDLLDWLDAEPDARFDAVVTSLGVNDVTDGVPPARWLDAQAALVEQLTARFGAAHVVLTAVPPMHRFPALPQPLRWYLGLRAARLNAALSRWAAGRPACEFLRVDMPLTRDAMASDGFHPGTQACAAWAGQAAAAIRRRVAAATRLQAAVG
>NZ_CP046584.1|WP_004545329.1|2557603_2557891_+|hypothetical-protein
MRAGFPFSPCRMSLEGRGVQGAAAPAPDDRRSGRPAPSGRPEVRTRRRYPAAAAREAPGGGIARGCDGDRTPPRLAHRLRLSRPSGRIAHAAAPT
>NZ_CP046584.1|WP_004546085.1|2559245_2559599_+|hypothetical-protein
MQRLIRAAACCVLVSSLAACVVTPPRPAPAPRPSPQVVGYERMQQIQGRIDNLSHRIDARVNAGYYPPPQGAALHRRLDVIRQESTDMAAQHGGGLSGDEQRVLNQELDVAARAIGE
>NZ_CP046584.1|WP_156890283.1|2559705_2560044_+|hypothetical-protein
MGFRPRHRSPLTAHRSPLAHRSPLTAHRSPLTAHRSPLTAHRSPLTAHRSPLTAHRSAHRRASARRLRDRAAHARQPPPLVFKRQRFAQIDNPSALAYIRPHASGERAAAVR
>NZ_CP046584.1|WP_004202927.1|2560381_2561500_+|glycine-cleavage-system-aminomethyltransferase-GcvT
MTVLKTTPLHAAHRALNARMVDFGGWDMPVNYGSQIEEHQAVRTDAGMFDVSHMCVVDFTGPRVRAFFEHAIANNVAKLQTPGKALYSCLLNPQGGVIDDLIVYYFTEEFFRVVVNAGTAEKDIAWFNQLNEQGGFGLTIAPRRDFAIVAAQGPNARAKVWDTVPCARAATSELKPFNAAQVAGTPFGDLTVARTGYTGEDGFEIIVPATHVEALWNALAERGVRPCGLGARDTLRLEAGMNLYGQDMDESVSPLDAGLAWTVDLSAPRAFVGRDALEAHGSRAAFVGLILQKENGRAGGVLRAHQKVATPHGEGEITSGTFSPSMQESIAFARVPKDVAIGDTVHVQIRDKQLPARVVKLPFVRNGKVLAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1061352 : 1069448

Ralstonia_virus(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076838843.1\|1061352_1062375_+	class II histone deacetylase	A0A2K9L2T7	Tupanvirus	1.9e-36	31.3
WP_009980362.1\|1062569_1063193_+	phospholipase D family protein	NA	NA	NA	NA
WP_080297087.1\|1063189_1063627_+	hypothetical protein	NA	NA	NA	NA
WP_004550288.1\|1064438_1064900_+	avidin	NA	NA	NA	NA
WP_004527234.1\|1064975_1065209_+	hypothetical protein	A4PE26	Ralstonia_virus	4.3e-13	60.6
WP_076838840.1\|1065244_1065472_-	hypothetical protein	Q8W6S4	Burkholderia_virus	1.1e-21	74.2
WP_038754502.1\|1065722_1066118_+	hypothetical protein	NA	NA	NA	NA
WP_038754499.1\|1066398_1066824_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	3.8e-15	49.4
WP_004552779.1\|1066820_1067327_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	8.7e-19	39.4
WP_080297085.1\|1067668_1068271_+	hypothetical protein	NA	NA	NA	NA
WP_011205127.1\|1068277_1069000_+	hypothetical protein	A4PE26	Ralstonia_virus	1.4e-30	39.9
WP_004196630.1\|1069184_1069448_-	hypothetical protein	Q8W6S4	Burkholderia_virus	2.2e-26	85.5

DBSCAN-SWA_2

1581574 : 1590410

Yaba_monkey_tumor_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038759721.1\|1581574_1582417_+	alpha/beta hydrolase	Q6TUZ7	Yaba_monkey_tumor_virus	4.4e-15	29.5
WP_004188957.1\|1582755_1583679_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	8.4e-44	36.5
WP_144402337.1\|1583806_1585159_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_004532363.1\|1585385_1586288_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	1.9e-53	39.9
WP_076823321.1\|1586299_1586602_-	hypothetical protein	NA	NA	NA	NA
WP_004189725.1\|1586614_1586932_-	competence protein ComE	NA	NA	NA	NA
WP_004190173.1\|1587003_1587996_-	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_009921652.1\|1588054_1588978_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.1
WP_004522358.1\|1589009_1590410_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.9e-79	38.5

DBSCAN-SWA_3

1930794 : 1940031

unidentified_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038761154.1\|1930794_1932342_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	4.3e-24	31.2
WP_004194373.1\|1932378_1932906_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_004532195.1\|1932902_1933586_+	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	2.0e-05	26.0
WP_004194137.1\|1933650_1934466_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	8.8e-37	33.3
WP_038761152.1\|1934641_1936648_-	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	1.1e-51	34.3
WP_004522147.1\|1936681_1937812_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.7e-22	27.6
WP_004194034.1\|1938078_1940031_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.7e-148	49.2

DBSCAN-SWA_4

2247424 : 2306614

Burkholderia_phage(25.0%)

tRNA,portal,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004521984.1\|2247424_2248723_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_004527811.1\|2248789_2249872_+	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	6.7e-08	46.6
WP_004534980.1\|2249915_2250773_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_004186955.1\|2250852_2251161_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_038759946.1\|2251175_2251772_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_004521980.1\|2252056_2252845_+	dioxygenase	NA	NA	NA	NA
WP_004527813.1\|2253233_2254835_-	APC family permease	NA	NA	NA	NA
WP_004196837.1\|2255269_2255473_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.3e-21	73.1
WP_038759943.1\|2255659_2256922_-	Hsp70 family protein	NA	NA	NA	NA
WP_004198059.1\|2257527_2258133_-	nitroreductase family protein	NA	NA	NA	NA
WP_080298575.1\|2258094_2258670_+	restriction endonuclease subunit R	NA	NA	NA	NA
WP_004198061.1\|2258629_2259913_-	MFS transporter	NA	NA	NA	NA
WP_009974227.1\|2260071_2260716_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011204168.1\|2260706_2261057_+	hypothetical protein	NA	NA	NA	NA
WP_004527819.1\|2261053_2261677_+	DUF1415 domain-containing protein	NA	NA	NA	NA
WP_076804633.1\|2263919_2264135_-	hypothetical protein	NA	NA	NA	NA
WP_004535015.1\|2264279_2265398_-	acyltransferase	NA	NA	NA	NA
WP_038784866.1\|2265396_2265876_+	hypothetical protein	NA	NA	NA	NA
WP_011205258.1\|2265835_2266282_-	hypothetical protein	NA	NA	NA	NA
WP_009922408.1\|2266808_2266904_-	hypothetical protein	NA	NA	NA	NA
WP_004204896.1\|2266942_2269108_+	peptidase	A0A0P0IY26	Acinetobacter_phage	1.9e-46	27.1
WP_071893038.1\|2269689_2270088_+	hypothetical protein	NA	NA	NA	NA
WP_011205259.1\|2270130_2270400_+	hypothetical protein	NA	NA	NA	NA
WP_004204906.1\|2270502_2270733_+	hypothetical protein	NA	NA	NA	NA
WP_012729786.1\|2270966_2271323_-	hypothetical protein	NA	NA	NA	NA
WP_004542659.1\|2271348_2272617_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004521963.1\|2272631_2274893_+	peptidase domain-containing ABC transporter	A0A2R8FG22	Brazilian_cedratvirus	2.3e-10	31.9
WP_004199995.1\|2274889_2276338_+	TolC family protein	NA	NA	NA	NA
WP_004521960.1\|2276547_2277516_-	hypothetical protein	NA	NA	NA	NA
WP_004527832.1\|2277527_2278493_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_011204174.1\|2278510_2278789_+	hypothetical protein	NA	NA	NA	NA
WP_004200001.1\|2278764_2282658_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004200003.1\|2282654_2283644_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_004535030.1\|2283648_2284581_+	OmpA family protein	NA	NA	NA	NA
WP_004527835.1\|2284786_2285908_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_004521956.1\|2285997_2288667_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	1.7e-89	32.1
WP_004200010.1\|2288700_2289801_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_076841899.1\|2289764_2291591_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_011205263.1\|2291682_2292195_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004527837.1\|2292222_2292726_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004521953.1\|2292798_2294289_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004521952.1\|2294305_2294824_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004531875.1\|2294860_2295532_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004521950.1\|2295906_2296521_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004521949.1\|2296629_2297976_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004521948.1\|2297972_2298758_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_009922432.1\|2298859_2299225_+	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	1.1e-52	89.3
WP_111952238.1\|2299328_2299919_-	hypothetical protein	NA	NA	NA	NA
WP_076926800.1\|2300311_2300728_-	DNA methylase	K4NZW3	Burkholderia_phage	4.6e-58	84.7
WP_038759954.1\|2301216_2301543_-\|plate	baseplate assembly protein	K4NZR5	Burkholderia_phage	1.0e-49	95.3
WP_004552667.1\|2302934_2304191_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	3.6e-21	26.2
WP_076835668.1\|2304832_2305156_+	type II toxin-antitoxin system RelE/ParE family toxin	A4JWV2	Burkholderia_virus	4.1e-54	97.2
WP_004202809.1\|2305158_2305515_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	3.9e-42	100.0
WP_038724553.1\|2305558_2306614_-\|portal	phage portal protein	A4JWQ2	Burkholderia_virus	2.0e-206	99.7

DBSCAN-SWA_5

2533388 : 2544905

Burkholderia_phage(22.22%)

integrase

attL 2523937:2523952|attR 2542313:2542328

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2523937:2523952	attL	NA	NA	NA	NA
WP_076859550.1\|2533388_2534090_-	chitin-binding protein	A0A0K1Y848	Apis_mellifera_filamentous_virus	3.7e-07	30.5
WP_004525721.1\|2534932_2535181_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	4.0e-41	97.6
WP_004525722.1\|2535337_2536417_-	DUF3396 domain-containing protein	A9YX32	Burkholderia_phage	2.2e-160	99.0
WP_009974475.1\|2536416_2536869_-	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	3.1e-31	58.8
WP_045141125.1\|2537126_2537669_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	1.4e-46	55.2
WP_038761783.1\|2537922_2538840_-	hypothetical protein	A4PE40	Ralstonia_virus	1.2e-45	40.2
WP_024430280.1\|2538839_2539157_-	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	3.7e-15	57.0
WP_044362991.1\|2539536_2540280_-\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	1.6e-53	46.9
WP_076804979.1\|2540295_2540475_+	hypothetical protein	NA	NA	NA	NA
WP_038761784.1\|2540599_2541001_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_038761785.1\|2541334_2541841_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_038761786.1\|2541833_2544905_+	N-6 DNA methylase	Q8V6N5	Halorubrum_phage	1.8e-05	27.0
2542313:2542328	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3624627 : 3635585

Streptococcus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004197486.1\|3624627_3626742_-	elongation factor G	E4ZFJ7	Streptococcus_phage	5.8e-56	26.7
WP_004185496.1\|3627042_3627552_-	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	5.5e-13	41.2
WP_071810810.1\|3627743_3627962_-	hypothetical protein	NA	NA	NA	NA
WP_004189780.1\|3628224_3628803_-	pseudouridine synthase	NA	NA	NA	NA
WP_004189552.1\|3629069_3630329_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-12	63.0
WP_009929279.1\|3630301_3630484_-	hypothetical protein	NA	NA	NA	NA
WP_011851202.1\|3630496_3632107_+	multicopper oxidase family protein	NA	NA	NA	NA
WP_004196460.1\|3632236_3632440_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_004194131.1\|3632973_3633288_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	4.4e-13	44.6
WP_004196461.1\|3633284_3635585_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	42.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP046583

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046583_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046583_1

600901-601034

Orphan

Consensus_repeat	Method
GCATCCCGATGATCGGGTATTCCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP046583_1

>merge|NZ_CP046583|1|600901-601034|CRISPRCasFinder
GTCACTCGACGACCGAGTATTCCGGACAGGGCGCACCCCGGCGATCGAGCATCCCGATGATCGGGTATTCCGGCGGCGGCGCCTCTGCGGTGGAGTGCTTCGGCGAGCAGGCATCCCGATGATCGGGCATTCCG

>NZ_CP046583|1|1|600901-601034|CRISPRCasFinder
GTCACTCGACGACCGAGTATTCCG	GACAGGGCGCACCCCGGCGATCGA
GCATCCCGATGATCGGGTATTCCG	GCGGCGGCGCCTCTGCGGTGGAGTGCTTCGGCGAGCAG
GCATCCCGATGATCGGGCATTCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046583.1\|WP_004529498.1\|589243_589678_+\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NZ_CP046583.1\|WP_004187469.1\|601758_602154_+\|conjugal-transfer-protein-TraR	unknown	unknown	gnl\|CDD\|224648
NZ_CP046583.1\|WP_156890225.1\|602286_604563_+\|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|369639
NZ_CP046583.1\|WP_038760045.1\|608635_609751_+\|sterol-desaturase	unknown	unknown	gnl\|CDD\|378454
NZ_CP046583.1\|WP_004523279.1\|593588_594620_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236122
NZ_CP046583.1\|WP_038760028.1\|595153_596965_-\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	unknown	unknown	gnl\|CDD\|225098
NZ_CP046583.1\|WP_076839133.1\|606790_607222_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046583.1\|WP_004187137.1\|590848_591298_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341411
NZ_CP046583.1\|WP_004552279.1\|597039_598824_-\|ribonucleotide-reductase	unknown	unknown	gnl\|CDD\|180772
NZ_CP046583.1\|WP_004205322.1\|607402_608338_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP046583.1\|WP_038760026.1\|599096_600362_-\|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl\|CDD\|130908
NZ_CP046583.1\|WP_038760030.1\|591759_593592_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223732
NZ_CP046583.1\|WP_038760032.1\|589727_590381_-\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318
NZ_CP046583.1\|WP_080298347.1\|594717_595137_-\|quinone-oxidoreductase	unknown	unknown	unknown
NZ_CP046583.1\|WP_076883070.1\|611215_611542_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046583.1\|WP_004557971.1\|610052_610493_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863
NZ_CP046583.1\|WP_076839131.1\|604834_606493_-\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP046583.1\|WP_009927403.1\|608464_608575_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046583.1\|WP_009950893.1\|610578_610884_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240624
NZ_CP046583.1\|WP_044584000.1\|587752_588859_+\|porin	unknown	unknown	gnl\|CDD\|238208

Protein	Function_ID	Function_description	E-value
NZ_CP046583.1\|WP_004529498.1\|589243_589678_+\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	9.00264e-33
NZ_CP046583.1\|WP_004187469.1\|601758_602154_+\|conjugal-transfer-protein-TraR	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	1.7869e-14
NZ_CP046583.1\|WP_038760045.1\|608635_609751_+\|sterol-desaturase	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	1.9875e-11
NZ_CP046583.1\|WP_004523279.1\|593588_594620_-\|hypothetical-protein	gnl\|CDD\|236122	PRK07877, PRK07877, Rv1355c family protein.	3.7258e-30
NZ_CP046583.1\|WP_038760028.1\|595153_596965_-\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	gnl\|CDD\|225098	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown].	4.07716e-75
NZ_CP046583.1\|WP_004187137.1\|590848_591298_+\|CBS-domain-containing-protein	gnl\|CDD\|341411	cd17775, CBS_pair_bact_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and archaea. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.39507e-50
NZ_CP046583.1\|WP_004552279.1\|597039_598824_-\|ribonucleotide-reductase	gnl\|CDD\|180772	PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional.	0
NZ_CP046583.1\|WP_004205322.1\|607402_608338_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.67997e-62
NZ_CP046583.1\|WP_038760026.1\|599096_600362_-\|polyhydroxyalkanoate-depolymerase	gnl\|CDD\|130908	TIGR01849, unnamed_protein_product, polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some [Fatty acid and phospholipid metabolism, Degradation].	3.1294e-115
NZ_CP046583.1\|WP_038760030.1\|591759_593592_-\|STAS-domain-containing-protein	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	8.34597e-107
NZ_CP046583.1\|WP_038760032.1\|589727_590381_-\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	5.8246e-20
NZ_CP046583.1\|WP_156890225.1\|602286_604563_+\|pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	8.32798e-57
NZ_CP046583.1\|WP_004557971.1\|610052_610493_-\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	7.66567e-25
NZ_CP046583.1\|WP_076839131.1\|604834_606493_-\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	9.5934e-37
NZ_CP046583.1\|WP_009950893.1\|610578_610884_+\|hypothetical-protein	gnl\|CDD\|240624	cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor. The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity.	0.0059154
NZ_CP046583.1\|WP_044584000.1\|587752_588859_+\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	1.41669e-50

>NZ_CP046583.1|WP_038760026.1|599096_600362_-|polyhydroxyalkanoate-depolymerase
MLYAWLEAQREFFRACQPWAGAAQRAGAGARPAGWPTWGPMARAADAVPAPPSFAIASIEIDGAAVPVDECVVDDTPFCALRKFSRRLRGDAAARPAVFLCTPLAGHHAVMLRETVETILATHDVYVTDWRNARDVPLEAGAFGLDDYVCTLERFVAGAAGDGLHMMAVCQATVPALAAVALLAARDVHVTSVALLGGPVDTRSHPTLIDRFALEHDLDWFRRTAIDIVPPPYAGAGRRVYPGFIQHAAIIVAHPQRRASLESRYWAAWMTGDFAAAARCLREMNEYGAVLDMTERYFLDTIRVIFHERLLAQGRWSIGRRLVAPQRLTRTALCTIEGGRDDIAGAGQTHAAHALCDAVPDAVRERITEPDCDHYDLFLGPRWRRTIHPALDAFWTRAEAARAAAGEPRPTAERVERRIAH
>NZ_CP046583.1|WP_004552279.1|597039_598824_-|ribonucleotide-reductase
MIGDMDDQPICDAVFADRYALPGEHSRAQACARVARALALAEPMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHTAPPRDAPGGALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIGATSPCGAQPLPPYGSAMLGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAYPLCDRHAHLDALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGAPGMRAENHAHRLFRSLRGERAALPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV
>NZ_CP046583.1|WP_038760028.1|595153_596965_-|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein
MTTGAVAARRLPRRGTARGRRAPSRAFTIHGGDEMRRSRPPKPAKPAAVRRRPHGAARAHAIRGNGPQRRAVRERAARRLSRDIDAALRRASTYPHPAGPIVRIETHLSVVYLVGRFAYKRLKPFDFGFANFSELATRRRACEAELALNRPLAAPIYLAAGPLVRRARGLRLFGAGAAVDHVVRMRRFDERMLFSRLLARGALDAADIDAAATRLAAYHLHAPRDIPRRAYGSARELRRQLDDMLAPLERALGAALPASLRAWCVRRCDELAAHLDARRADGYVRACHGDLHLNNVVKRGRDALMFDCIDFDDALRWIDVINDLSFLLMDLHAHDRAALAHRLLNRWLDETGDFAGLAALPLYVAYRALVRALVATMRAGGDAAARAARIERARRYVDVAAHAARARRPCLLLCHGYSGSGKSVASRALADVSGAIRLSSDSERKRARPFAAVDARPLPASAYTPQQIDAQYERLRALARDVLRAGYTALVDATFLSHARRARFFALARELGVPVYVLDFHASRACLERRVDARAAARDDRSDAGAAVLATQRASADPLDADERARAIGFDTDVPLATLRSAGYWRPVLDALDAARVDAQATR
>NZ_CP046583.1|WP_080298347.1|594717_595137_-|quinone-oxidoreductase
MRNRRCDTSRQRGPRRTHRRPFARGRLAAPLRSLAQRHAMPCRTAPHRNGNGNGNGNGDGNDDRTPPPAGSARAARRADSRANRTRSRAHARRAGEIRRSRGPRRNGRRPRERRPNARSTHRPSAVDLGQSAPAGRSID
>NZ_CP046583.1|WP_004523279.1|593588_594620_-|hypothetical-protein
METSPLKTTTPEAIPPFDPSASVEDKLRLAIHYAILAPSSHNTQPWRFMVGDGSVMLCADRLRALSVVDPYDRELLISCGAALLNLRVALSRFGFAYVIDMFPSPSDPDVIALVRLDPHGYHDESLVPLFDAILERVTTRTPYANEAVPCDVQRALVDAGAAEGAEIACVDAPHALDEIAELIADADRLQFADPRFRRELANWVHPRRHDDGMPAFAAGVPALLDFATPVVASAIRTFDLGGGLAAMHHKLVDGSPLIVGISTASDDRDAWVAAGQALERVLLVAAAAGLTASYLNQPIEIDALRERLRPLLHVDAHPQLLLRIGRGPVVAHAPRRPLMDVVS
>NZ_CP046583.1|WP_038760030.1|591759_593592_-|STAS-domain-containing-protein
MTERERAARGRNDARRGGSDSGGDDEAWRRWLPGIATLRTYRRAWLARDLYAGVALTAVLVPVGMSYAQAAGLPVIAGLNASIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHGEPAHAVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQYGYLNGLALTLIASQLPSLLGTVPLGGTFVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGASIVAAWLGAAPDAGGAHAHVAYAHVANAHVALVGSLAGTLPPLGLPSISLADASRLIAGALAIAMVSVADISVLSHVFAQHDGSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVALAAGARTQLTSLVAAACIALLLVAPTLLARVPLAALAAVVVYSANALVDVRAIVRLDRVRRGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSRHPGAALTRGLVAFRWDAPLFHANATIFRDHVRDAIAEAGAPVRCVVIAAEPITDVDVTAADMLATLRDELAARRIALVFAEMKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRKDVATARRARR
>NZ_CP046583.1|WP_004187137.1|590848_591298_+|CBS-domain-containing-protein
MNAAEICTREVVACRRTDTVLDAAHLMRDRHVGDLIVVDDAGHAHAPVGMLTDRDIVLSLIAKEVDPAALFVGEIMSAPAAVVHEHDSLWTIAQRMRLTGVRRMPVVNADGALVGMVSVDDLLASVAALFDEIASISRRQIHFEEKARD
>NZ_CP046583.1|WP_038760032.1|589727_590381_-|SagB/ThcOx-family-dehydrogenase
MSDPELLTYQPIAVALPEPAEAGAPAVIDLPPPDLGAGLPLMSALSLRASTREFSSAALAPTTLGELLWAADGVNRPTTGGRTAPSAHAFNEIDIYAALPDGVYRYDAALHRLLLKHAVDARNLTGYQDFVGAAPLDLIYVVRMSRLLSMPKPLRETFSAVAAGAIAQNVALYCASTGLGCVVRGWINHRLLAEALSLNEDELPILAQTVGKPAAHP
>NZ_CP046583.1|WP_004529498.1|589243_589678_+|Hsp20/alpha-crystallin-family-protein
MSNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKVERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG
>NZ_CP046583.1|WP_044584000.1|587752_588859_+|porin
MNAKSIAAAALAVAQAGLAHAQSSVTLYGALDAGVLWQNTSAASFSPTAPNTGAVGRFKDGGVYSSLWGIKGTEDLGGGYRVNFRLQGAFDGGTGKFGLSDAPGAVAAFNQIATLGVSGPFGTFNAGRQIVPMIYAMADTDVRAARFFGSVLTAWLGLNTAAGWPGNSTNAPIGALYDSDALVYQSPAFGGASLALEYAPGGVPGGVQRGARASNALNLAAVYYNGHDTNPAPGASATGLDNNRFVYVGAQYKLKDVAVSASYGNGRNPARGDRVNLDMFAFGLGYRVSPFFRVSSGVYYLKDRNRLANRSTSIVLGADYELSKHTTLYAQGGRVDNRGTMAQMLAYGQPVAPGLATTAAMLGMRHSF
>NZ_CP046583.1|WP_004187469.1|601758_602154_+|conjugal-transfer-protein-TraR
MAAFDEHQLQVLGALLRACRQALQADVRAGERQRADEPYANLAGPAPDEGDEANADLFVDVDHALLGMKLAELRDVDAALQRIARRDYGCCADCGQPIAYERLLARPTALRCAPCQRAHERRFATQPRPSL
>NZ_CP046583.1|WP_156890225.1|602286_604563_+|pyridine-nucleotide-disulfide-oxidoreductase
MREFDYLLVGGGIASVTAARTLRGEDASASIAILCGEPVLPYQRPPLSQEWLMGAVQPASITLHDAAFYAAQRIDIALGVRAEQLDRAKRIVRTSSGATFRYGKLLIATGASAKAPALPGFGLDGVHVLHTFAQAQALKDAAAHASRRATVLGGGFLGVEIAATLQALGLQVTLVERAPGVMPSLRAPALGGHFEALCRARGIDVLTRCEVRRVLGAQCVEAVETSDGGTRPCDLFVAAVGVTPNCGWLDGSGLALGDGVEVDAFLQTADPDVFAAGDVAHFDDPIFGVRRRIEHWDNAVRQGRIAARNMLGHRLPYRDVSIFYGSVFGLSYNLLGYPVGATETIERGAFDEASYMQLYLADDVLRAAFTIDRPAVEIAALNDAIRLHVNVAARKTKLSDPNYPLDKLPVQTILILQGGGALGAFECGAVKALEQHGVRPDVISAVSIGAFNGAIVASHPKGATKALEAFWRELSIALPLPYESQWREAWLSSYVLSFGVPNFLKPQWSQLGFDADRLRAKWTSFFDATAIEQLIARYVDFDSLGMSPTRLLIGAVDVETGEPRIFDSYVDRLSPAHVLASGSLPPGMPWTVVDGRPYWDGGVVSNSPLDLVIARCGQIGGRVFIVDLFSGSKALPTNLVEVMLRREEIAYMDRVRNDLRFEEYASDFRDLVDGILAHVDAPSANEIRQQPLYIRLMGNRAAIDIARITLNREGRLSFIEDYDFSSDAIAQLQQQGYDAALVALANGRSRRRRGRRRA
>NZ_CP046583.1|WP_076839131.1|604834_606493_-|GMC-family-oxidoreductase
MKQQSYDYDYVVVGSGFGGSVSALRLSEKGYRVLVIEQGRRWTPENLPESTWNLSRWQWRPALGLHGFFSMRFFRHVVVLHGNAVGGGSITYANTLLVPPDKVWREGTWAGLEDWERVMPAHYATAKRMLGVVTNRRMDAADFRLKDMAKLIGVEKSFYPTEVGVFFGDDADAPGTRYADPYFGGAGPERTSCIGCGGCMVGCRHGAKNTLDRNYLYLAERLGAQVREQTKVVDVRPLDARADGAAGYAVEAVSLAAGARGAKSRLTCRGVVFAASSLGTQDLLMRLKEKGSLPRLSDALGKRVRTNAESLIGVRFPKSRVDLSKGVAIGSGIYIDEHTHIEATRYPSGSDTMGLLTTVLTRGAPGGLRVLVWLGALAKLVLTRPLSAWRMIDPRGFARETMIFLCMQTLEGHLTMRLKRRWFWPFSKQLATSGAKIPAYIPAANDFAQKAARALGGVPMTSLTEILLNVPMTAHCMGGAAMARDARDGVCDGRSRVFGYRNMYVCDGSVLGANLGVNPSLTITALAEHAMSHVPAAREQRWDSTAETPVAA
>NZ_CP046583.1|WP_076839133.1|606790_607222_-|hypothetical-protein
MHQERRKRNADRHGTHQYDADSRAAPREAPRFEHEPKKQRDAAQHEVDRDRAAREIRERIEHKARPDVRRAERPISQDVAQTPIGAAGAISPSTAHSIFLEIGLALAGRPIQVRRNRAPFTHGTPRRRPARGPTARTASPAPV
>NZ_CP046583.1|WP_004205322.1|607402_608338_-|LysR-family-transcriptional-regulator
MIQNLRQLDLNLLLVFDALMQEQNLSRAAIRLHMSQPAVSNALTRLRQQLGEPLFTRTARGMTPTAQARTLYEPVRQALYLLQIGLGPQADFEPDTHHLFKLSMNDYGQTVLLPDLLAHIKSRAPNVMLSVQSDDAGSIPAQLTTGTLDLAIDYLHFDNPELCYEPLHEEHLVVIGRAGHPAFAGGLALRGYEESGHVSIQPRDRRGSPLEIVLGSARVRRVVHLQVPHYLTIPALVAKSDLLGTIPRRLAERFADVYALQIAPLPIDIAPIQVSLIWHRQQDAQPGLRWLREQVVLTHRAIIGCGEHAPA
>NZ_CP046583.1|WP_009927403.1|608464_608575_+|hypothetical-protein
MQSTGSFDISARRMIEFRSVNKSNHDCPLEKSSGLL
>NZ_CP046583.1|WP_038760045.1|608635_609751_+|sterol-desaturase
MTQDVTVFRARYRASVHPRYNAWLHGGFVLAYGCAAIAFFLKDVARVSAVQWASVPAAFLLFNWLEFTVHRHVGHVKRRFGAMFYRRHTGDHHSFFANEQIAYREARDWRVILFPAWLIVVFSLGLFALHAVLGRFDANVAGLFASTMLGGYLLYECVHACEHLPDAHPLAKWLWIRQMRVLHRVHHRDALMRSCNFDVIWPLMDWLHGTLRWSEAPGADMSTRMRHEIDIACAGADVLAYASDASRWPEWHPSSLRVDGPAGSLAAGSRFDEDVRAAGRVDRLHWDVVRNEPGVMWQARAANTAGSLRILLTYECSGGPRGARFVRTLHYHSPNPLLRLANALVMRGRVERESAYSLTLLKRRLEAARDA
>NZ_CP046583.1|WP_004557971.1|610052_610493_-|SRPBCC-family-protein
MKQQRIEIAEEFDAPVHQVFRFFSEHENLKSIFSPARIRRISDGEPARNGVGSAREMRVPGAPPFVETVTAYQENELIEYRITRGSPLRDHLGVMRFVPIDERRTYFHYVITFEGKVPFVAPVVRHVLEGSIRRGLGKVATRRLWG
>NZ_CP046583.1|WP_009950893.1|610578_610884_+|hypothetical-protein
MRHDSRLRCTRDDDDIDQCHRQSGRSPLDAEPNRGCAARRLRASGGRRPRGANTEPRRRKPHARVIRQRSWRAARTRPCRRFSAACGRFGQAMARRARPPA
>NZ_CP046583.1|WP_076883070.1|611215_611542_-|hypothetical-protein
MRHACRACGPRVRRTRFCAMRKRGETHGRSLSLSLAHRATDARRARCPHSRHELCTRARAPARERRRCIASRISLITTINFRAVAFRPRLPKHYIDRCNHRSAGTPAA

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Crispr_ID: NZ_CP046583_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046583_2

672215-672339

Orphan

Consensus_repeat	Method
CGAGGCGGAACGCCGGGCGCGCCGCCGCGCACGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046583_2

>merge|NZ_CP046583|2|672215-672339|CRISPRCasFinder
CGAGGCGGAACGCCGGGCGCGCCGCCGCGCACGGCGCGTCGGGCGAAGCGGTTCGGATAGGGTTGCGAACGGGCCGAGCGCTTCGATCGCGAGGCGGAACGCCGGCGCGCGCCGCCGCGCACGGC

>NZ_CP046583|2|2|672215-672339|CRISPRCasFinder
CGAGGCGGAACGCCGGGCGCGCCGCCGCGCACGGC	GCGTCGGGCGAAGCGGTTCGGATAGGGTTGCGAACGGGCCGAGCGCTTCGATCGC
GAGGCGGAACGCCGGCGCGCGCCGCCGCGCACGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046583.1\|WP_004523336.1\|667915_668212_+\|lipoprotein	unknown	unknown	unknown
NZ_CP046583.1\|WP_038760363.1\|675833_677309_+\|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl\|CDD\|237109
NZ_CP046583.1\|WP_038760365.1\|681102_682200_+\|Ku-protein	unknown	unknown	gnl\|CDD\|274290
NZ_CP046583.1\|WP_004541992.1\|674400_675159_-\|DUF4397-domain-containing-protein	unknown	unknown	gnl\|CDD\|379570
NZ_CP046583.1\|WP_004523342.1\|677607_677769_+\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
NZ_CP046583.1\|WP_004552253.1\|668608_669466_+\|MipA/OmpV-family-protein	unknown	unknown	gnl\|CDD\|377682
NZ_CP046583.1\|WP_004529429.1\|677374_677563_+\|DUF3008-family-protein	unknown	unknown	gnl\|CDD\|314387
NZ_CP046583.1\|WP_004553960.1\|670143_670494_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046583.1\|WP_004529443.1\|664902_665151_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046583.1\|WP_011205749.1\|667522_667879_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046583.1\|WP_004542031.1\|670943_671288_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046583.1\|WP_004529428.1\|677803_678235_+\|DUF3022-domain-containing-protein	unknown	unknown	gnl\|CDD\|378603
NZ_CP046583.1\|WP_028201486.1\|672535_673045_+\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377580
NZ_CP046583.1\|WP_004557962.1\|664589_664769_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046583.1\|WP_011853920.1\|673445_674342_-\|manganese-catalase-family-protein	unknown	unknown	gnl\|CDD\|226076
NZ_CP046583.1\|WP_004523334.1\|666946_667216_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046583.1\|WP_004523344.1\|680519_681023_+\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NZ_CP046583.1\|WP_004529441.1\|665443_665743_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046583.1\|WP_004523343.1\|678370_680497_+\|catalase-HPII	unknown	unknown	gnl\|CDD\|236886
NZ_CP046583.1\|WP_038760037.1\|671513_672071_+\|DUF3005-domain-containing-protein	unknown	unknown	gnl\|CDD\|378664

Protein	Function_ID	Function_description	E-value
NZ_CP046583.1\|WP_004523342.1\|677607_677769_+\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	0.00075118
NZ_CP046583.1\|WP_038760365.1\|681102_682200_+\|Ku-protein	gnl\|CDD\|274290	TIGR02772, conserved_hypothetical_protein, Ku protein, prokaryotic. Members of this protein family are Ku proteins of non-homologous end joining (NHEJ) DNA repair in bacteria and in at least one member of the archaea (Archaeoglobus fulgidus). Most members are encoded by a gene adjacent to the gene for the DNA ligase that completes the repair. The NHEJ system is broadly but rather sparsely distributed, being present in about one fifth of the first 250 completed prokarytotic genomes. A few species (e.g. Archaeoglobus fulgidus and Bradyrhizobium japonicum) have multiple copies that appear to represent recent paralogous family expansion. [DNA metabolism, DNA replication, recombination, and repair].	4.12495e-123
NZ_CP046583.1\|WP_038760363.1\|675833_677309_+\|RNA-polymerase-factor-sigma-54	gnl\|CDD\|237109	PRK12469, PRK12469, RNA polymerase factor sigma-54; Provisional.	0
NZ_CP046583.1\|WP_004552253.1\|668608_669466_+\|MipA/OmpV-family-protein	gnl\|CDD\|377682	pfam06629, MipA, MltA-interacting protein MipA. This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex.	9.39837e-51
NZ_CP046583.1\|WP_004541992.1\|674400_675159_-\|DUF4397-domain-containing-protein	gnl\|CDD\|379570	pfam14344, DUF4397, Domain of unknown function (DUF4397). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 120 amino acids in length.	3.42152e-26
NZ_CP046583.1\|WP_011853920.1\|673445_674342_-\|manganese-catalase-family-protein	gnl\|CDD\|226076	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism].	1.63589e-108
NZ_CP046583.1\|WP_004529428.1\|677803_678235_+\|DUF3022-domain-containing-protein	gnl\|CDD\|378603	pfam11226, DUF3022, Protein of unknown function (DUF3022). This family of proteins with unknown function appears to be restricted to Proteobacteria.	1.51165e-32
NZ_CP046583.1\|WP_028201486.1\|672535_673045_+\|ferritin-like-domain-containing-protein	gnl\|CDD\|377580	pfam05974, DUF892, Domain of unknown function (DUF892). This family consists of several hypothetical bacterial proteins of unknown function.	3.60158e-48
NZ_CP046583.1\|WP_004523343.1\|678370_680497_+\|catalase-HPII	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
NZ_CP046583.1\|WP_004523344.1\|680519_681023_+\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	3.63901e-31
NZ_CP046583.1\|WP_004529429.1\|677374_677563_+\|DUF3008-family-protein	gnl\|CDD\|314387	pfam11450, DUF3008, Protein of unknwon function (DUF3008). This is a bacterial family of uncharacterized proteins.	1.17203e-13
NZ_CP046583.1\|WP_038760037.1\|671513_672071_+\|DUF3005-domain-containing-protein	gnl\|CDD\|378664	pfam11448, DUF3005, Protein of unknown function (DUF3005). This is a bacterial family of uncharacterized proteins.	5.40868e-52

>NZ_CP046583.1|WP_038760037.1|671513_672071_+|DUF3005-domain-containing-protein
MQNAESNPTPQKQREIAAKSPVKTPAAGRDMPDAATQEKETRAHERKLTAEAIAGKTPTGLPPIDVDQYASGDGDPVRRAASRIVTLDNANMAATDNTVDVDGKGLEARTGASEWHDNVIYSNVSLDEAVDTPDDSLAGIESRPHGYRPEVEPSEGWRVVYLGTVDIEHTLGARTEHKFSFERST
>NZ_CP046583.1|WP_004542031.1|670943_671288_+|hypothetical-protein
MKKYLAIMAAVAIVLGGCATKNYGRMGNLTDYERNTMDCREINLEIARVDGFLSHVDEESEFDGRSVLSFLGDFGIGNVLEKDAAKKSARDRRQALDALRAAKQCGYATTGAPL
>NZ_CP046583.1|WP_004553960.1|670143_670494_-|hypothetical-protein
MHIKSAATFVSLVLFLHGCTSIDIDQLASHQHDQDENRCRNYGYQIGTNKFADCMMLLDQERRSAAIAEDENDERLKSLSIMRNNDERFPVCVPTMPNVKLDVPNHSWYGPNCRER
>NZ_CP046583.1|WP_004552253.1|668608_669466_+|MipA/OmpV-family-protein
MRDAAARRRTARGIVCAACAAAAVSAHAQTPSPLGEWQYSAGVPLDKLFNPNPQTWQISVGAAATLQPRYDGSNQYRPMAGPTFDARYRDLWFVSTGEGIGVNVLRGPNWRATLSAGYDLGRREADDRGHLTGIGNINPAAVIKLSADYVISHAFPLVLRADVRRSVGGANGWVADLAAYMPLPGSSETFYWFAGPTVTFADSRYMNSWFGVNDAQAARSGHPRYAPSAGVKSFGGGMTLVWFVTKHWFVTADGAIEQLVGSAARSPLTQRSTNAVVDVSINYQF
>NZ_CP046583.1|WP_004523336.1|667915_668212_+|lipoprotein
MTIRRISTKLAGVAAMALTAACSQNGPYGGSPRAGSTGGTITDGVNQPPAAVTPSDGARYGSPGYHGAQPMAPGGDVGDGNGAGTGSMPAPGAPGSSD
>NZ_CP046583.1|WP_011205749.1|667522_667879_+|hypothetical-protein
MAGAARDAPPPLEKAMTIRIEPGDKREIAETLGRYFEARSIPFHIEEHPADVLHIGFHADGHPAAVTVTFDEDAFAAFAQWDIEQKRLALRRLADEFAEMMAQRSPTAHAGDLHINRF
>NZ_CP046583.1|WP_004523334.1|666946_667216_+|hypothetical-protein
MHPDVLFHRPYPPIPDPEYVPPDPDEDDDNPVDPPEPYRHPEGDPPPPEPPVHARLAPRGRRGGRLTAAACVCRRTLAHLRGDGRVHCE
>NZ_CP046583.1|WP_004529441.1|665443_665743_+|hypothetical-protein
METPKSTVHYESNVCGGSFESVLDRFGNWKREPLVYRPERRMFEGKDSVRRLGDEAFDSPDKARRALIRSCAPRDRFALAAPICDDDHQMWLVMAAFEA
>NZ_CP046583.1|WP_004529443.1|664902_665151_-|hypothetical-protein
MTQHSQRQPTPRAPNSPPMKDKDEIRTHRSEDRIDKALEDTFPASDPPATGGVTRVDPSKPTRGDRPHGPAHDTHRRDDAKH
>NZ_CP046583.1|WP_004557962.1|664589_664769_-|hypothetical-protein
MSGGECIAAGSSFKEHQMSRTKRMWREVEGAVEVTALAAIECALLVAILVALGFPHAGI
>NZ_CP046583.1|WP_028201486.1|672535_673045_+|ferritin-like-domain-containing-protein
MTTPQEHLEDWLRDAYAMERHVETMLKAQAARLDNYPVLRDRIQQHVEETLEQQRLLESCLQRLDTSPSAIKDLAARAAAYGQAASGLFVADEVVKGAMAGYVFEHVEIASYKTLIAAAQLAGENEIRDCCERILKQEVDMAEWMSQHLPDIAVAFLERSAAERRDAKR
>NZ_CP046583.1|WP_011853920.1|673445_674342_-|manganese-catalase-family-protein
MFFHNKRLQYTVRVAETNPGLANLLLEQFGGPQGELAAAMRYFTQAIAEEDAGRKDMLYDIATEELSHLEIIGSIVAMLNRGAKGELAEAVDEQAQLYRKLNGGGNDSHVTQLLYGAGAPLVNSGAVPWTAAYVDTIGEPTADLRSNIAAEARAKIIYERLINVTDDPGIRDALGFLMTREVSHQKSFEKALYSITPNFPPGKLPAVPEYADLYYAMSDGGGARRKFPWNDGHDLRLVEHPPVPADGGDGKATVALDGDESTTLEAMRHRLKSDPSSDPTTGADLGSGGPDKPRDFPT
>NZ_CP046583.1|WP_004541992.1|674400_675159_-|DUF4397-domain-containing-protein
MKPIRTVAALISAVALVAACGGDDTGTELGISNPQARFINAVPAGPSLDYYLNAQANATGIAYKGVTRYRSVGSGSQTASYDVTGTSVTIASQTFNAANGHHYTTIAIPSTSTPISVIDDPFAKGLLSDQARVRGFNASPNAQNVDIYVVPPGTNIAAQSPTLAGAAYQNAVPASGQDSIYLSGGTYQVIVTLPGSKTPILTTPPVSIANNADWLLLTIPAGGVADVVPNDIHVLVAQGNDADTSAQELGPQ
>NZ_CP046583.1|WP_038760363.1|675833_677309_+|RNA-polymerase-factor-sigma-54
MSATLALQMRQHLALTPRLQQSLRLLQLSSLEFQQELRQALDTNPFLEDVQSPDDDAAEAAPKPGETPAADANARADDGYAERDEGPFATDASPPAGQDVPMTAELSARGSSRRSDDASDLEPGDWMTAEPTLHEHLHDALRLCQLTRRDRTLARMIIDALDDDGYLRQALPELAAAADPLLHPAEQELLVALRLVQSLDQPGIGARTLSECLLLQLDAMPADTPGVECAKEIAAHHLERLARRETAEMQRRIGCDTHTLRIACALVRRLDPRPGNQYGSTAGNYVVPDVIVRQVRNDWLVTINPAVMPRARIHRRYAELFAQSSGSNQSPLGQQLQEARWLIRNAQKRFDTIRRVGECIVERQRDFFRYGEIALKPLVLRDIADELGLHESTISRATGNKYMSTPHGTFEFKHFFPRKLEAAGKGACSAAVARVLIRDMIAAEQAIDPLSDVALAQRLAGRGIVLARRTVTKYRQAMKIPPAELRRRAPL
>NZ_CP046583.1|WP_004529429.1|677374_677563_+|DUF3008-family-protein
MPAKSQAQQRAAGAALSAKRGRTKASELKRPSKSMYSSMSEKELEKLAGTKTRDKPKHKSKS
>NZ_CP046583.1|WP_004523342.1|677607_677769_+|DUF1328-domain-containing-protein
MLRYALIFFIIAIIAAVLGFGGIAAGAAEIAKILFYIFVVIFLVTLVLGVARR
>NZ_CP046583.1|WP_004529428.1|677803_678235_+|DUF3022-domain-containing-protein
MPRARRPPGAGSGRAMTLPTDLPQRLVEIEHLLSDCFASPSTTVLHVDDSSGRLTIQVSWVAARAASSLLEARCALNLVFEPNVLRRYGRLDAAARARVRERLAALARQTVDAARPVEGSEADACNATLPVTDALLDDALRGG
>NZ_CP046583.1|WP_004523343.1|678370_680497_+|catalase-HPII
MADSDRNAPHETPRAAQPDDARADRKSQDLEPYRSKPQGEALRTNQGVRIADDQNTLRAGARGPSLLEDFIMREKITHFDHERIPERVVHARGSAAHGVFRVYESMAEYTKAAFLQDPAKETPVYVRFSTVQGPRGSADTVRDVRGFAVKFYTDEGNYDLVGNNMPVFFIQDAIKFPDFVHAVKPEAPNEMPTGASAHDTFWDFVSLVPESAHMVAWLMSDRAIPRSFRTMEGFGVHTFRFVNAQGVARFVKLHWRPVLGSYSLLWDEAQKIAGHDPDFHRRDLWEAIERGDYPEYELGVQIIEARDQHAFGFDLLDPTKLIPEETVPVKLIGKMTLNRNPDNFFAETEQVAFHPGHLVPGIDFTDDPLLQGRLFSYTDTQLSRLGGPNFHELPINRPVCPFANLQRDAMHRQTIDVGQASYEPNSLNGGWPKETDPAGRDGGFDSYPETVEGAKVRVRSGSFADHFSQAALFYQSMSDVERRHIRDAYRFELGKVTRPEIRARVVDEILARFDAGLAAEVAEGLGLPPPPASAPAIVAQPLSPALSLLTRGKRSVRSRKVALVATPGADTRLIERVRRALTDARAVPVLVAPTLARIGELTPEATLAGMPSVMFDAVFVCGGDGDGRDLVHSSDARHFLQEAFKHLKAIAAVGSGRQLLGAAHLPEQGDGVCVGHAADLDQVVAKFFDALSEHRVWSREPLAQGVPA
>NZ_CP046583.1|WP_004523344.1|680519_681023_+|DUF421-domain-containing-protein
MDAVLAFFAPLFGSGAPLGAPQMAARAAAAFFIALALIRIAGRRSFGQRSPFDYVVGILLGATLSRAIVGVSPFWPTVAASLAIVLLHRALAWACVRSARLERFFVGAQRELYRNGRFDEAQMSAALITMTDIYESVRQKTGECDLSGVAAAILERNGHVSIIRRKS
>NZ_CP046583.1|WP_038760365.1|681102_682200_+|Ku-protein
MARMIWKGAISFGLVHVPVQLYPATRTVKPSFRLLDKRSLDPVGYRQINKRTGKAVPREDIVRGYEYEKERYVILTDEEIRAANPESTQTVDILTFVDDEAVSFLYLDTPYYLVPDRGGEKVYALLRDALKRSGKIGIALVVMRDRQHLGAVIPVGPLLALDTLRWQDELRPLAEIDAPAADAKKAGVSAREFEMAAKLIDDMSGDWSPDDYHDTFRDDILALVDRKVREGRVEEIAQEDTAPARRTADIVDLTELLKRSLGRAKGPRRAPDGGANERGDSGEGGEGGGRGGGELARELERSVGGTRGGRGGGRKKAEPHASPRKRAQAAATKRGKQAKPRDGASRASARTAAKKPAAARKRRAA

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Crispr_ID: NZ_CP046583_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046583_3

1050174-1050266

Orphan

Consensus_repeat	Method
TCGCCGCCGCGCGCGACGACGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046583_3

>merge|NZ_CP046583|3|1050174-1050266|CRISPRCasFinder
TCGCCGCCGCGCGCGACGACGCGCTGAAGGACGCGCTCGCGCAGGCCGCCGCCGAGCGCGAGCGGCTGATCGCCGCCGCGCGCGCCGACGCGC

>NZ_CP046583|3|3|1050174-1050266|CRISPRCasFinder
TCGCCGCCGCGCGCGACGACGCGC	TGAAGGACGCGCTCGCGCAGGCCGCCGCCGAGCGCGAGCGGCTGA
TCGCCGCCGCGCGCGCCGACGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046583.1\|WP_009926814.1\|1058111_1058270_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046583.1\|WP_004544573.1\|1060360_1061485_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP046583.1\|WP_038759043.1\|1052686_1053535_+\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|376304
NZ_CP046583.1\|WP_038728004.1\|1046189_1047776_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|183615
NZ_CP046583.1\|WP_050020039.1\|1042621_1044052_-\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236180
NZ_CP046583.1\|WP_038762638.1\|1054843_1055347_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046583.1\|WP_011204277.1\|1040899_1041070_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046583.1\|WP_038761138.1\|1055404_1055914_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046583.1\|WP_004524990.1\|1056454_1058020_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185008
NZ_CP046583.1\|WP_038759039.1\|1048703_1049012_+\|membrane-protein	unknown	unknown	gnl\|CDD\|274462
NZ_CP046583.1\|WP_004524981.1\|1045960_1046218_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046583.1\|WP_038761136.1\|1061487_1064700_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP046583.1\|WP_004187346.1\|1049008_1049710_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|237383
NZ_CP046583.1\|WP_038753816.1\|1044035_1045829_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|213656
NZ_CP046583.1\|WP_004187193.1\|1049706_1049955_+\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|184067
NZ_CP046583.1\|WP_004529184.1\|1041446_1042625_-\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|235922
NZ_CP046583.1\|WP_004188221.1\|1047765_1048221_+\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|184057
NZ_CP046583.1\|WP_038759041.1\|1050701_1052690_+\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183987
NZ_CP046583.1\|WP_004529178.1\|1053741_1054767_+\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NZ_CP046583.1\|WP_038753797.1\|1058375_1060211_-\|response-regulator	unknown	unknown	gnl\|CDD\|237425

Protein	Function_ID	Function_description	E-value
NZ_CP046583.1\|WP_004544573.1\|1060360_1061485_-\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	1.21198e-25
NZ_CP046583.1\|WP_038761136.1\|1061487_1064700_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.85043e-92
NZ_CP046583.1\|WP_038759043.1\|1052686_1053535_+\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|376304	pfam00231, ATP-synt, ATP synthase.	3.06374e-34
NZ_CP046583.1\|WP_038728004.1\|1046189_1047776_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|183615	PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.	0
NZ_CP046583.1\|WP_050020039.1\|1042621_1044052_-\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	gnl\|CDD\|236180	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated.	0
NZ_CP046583.1\|WP_004524990.1\|1056454_1058020_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	2.47951e-79
NZ_CP046583.1\|WP_038759039.1\|1048703_1049012_+\|membrane-protein	gnl\|CDD\|274462	TIGR03165, F1F0_chp_2, F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.	1.16351e-09
NZ_CP046583.1\|WP_004187346.1\|1049008_1049710_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|237383	PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional.	1.54059e-122
NZ_CP046583.1\|WP_038753816.1\|1044035_1045829_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|213656	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	2.19289e-178
NZ_CP046583.1\|WP_004187193.1\|1049706_1049955_+\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|184067	PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional.	4.45015e-37
NZ_CP046583.1\|WP_004529184.1\|1041446_1042625_-\|acetate/propionate-family-kinase	gnl\|CDD\|235922	PRK07058, PRK07058, acetate/propionate family kinase.	0
NZ_CP046583.1\|WP_004188221.1\|1047765_1048221_+\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|184057	PRK13447, PRK13447, F0F1 ATP synthase subunit epsilon; Provisional.	4.44077e-63
NZ_CP046583.1\|WP_038759041.1\|1050701_1052690_+\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|183987	PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.	0
NZ_CP046583.1\|WP_004529178.1\|1053741_1054767_+\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP046583.1\|WP_038753797.1\|1058375_1060211_-\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	2.75967e-132

>NZ_CP046583.1|WP_004187193.1|1049706_1049955_+|F0F1-ATP-synthase-subunit-C
MNNLIEVVSIAAAALAVSFGAIGPALAEGRAVGAAMDAIARQPDASGTVSRTLFVGLAMIETMAIYCLVVALLLLFANPFVK
>NZ_CP046583.1|WP_004187346.1|1049008_1049710_+|F0F1-ATP-synthase-subunit-A
MNASPLSTVPLFSVGPVGISAPVLATWAIMAVLVALALVARRRLSVDAPSRLQSVLELFVATVDAQIADTMQTPPARYRALIGTIFVLVFCANGASLVPGVEPPTAHLETDAALALVVLAATLYYGVRARGVRGYLATFAEPTWVMIPLNVVEQLTRTFSLIVRLFGNVMSGVFVIGIVLSLAGLFVPIPLMALDLLTGTVQAYIFMVLSMVFIGAAVSGDETSAPRRGQENT
>NZ_CP046583.1|WP_038759039.1|1048703_1049012_+|membrane-protein
MIEMWETARALFDGIAAAIGLALGFAAGACHFVSLGWNSRLFVAGRAGVALALQLARVALAVAVLVVLARAGFGMLVAGSAGFFAARAIAVRRAAALTGARR
>NZ_CP046583.1|WP_004188221.1|1047765_1048221_+|F0F1-ATP-synthase-subunit-epsilon
MGAELRVTIATPARVCVDDLPIVSLRAEDASGAFGIRAGHVDFVTLLRASVVRWRTADGATHYAALDGGVLRVTRGARIEIACRDAVLGESLAELEAVVRGVRATQLDEKRRARVDETRLHAQAVRRLLTYLRPEHAKDGVHAPLKPETLE
>NZ_CP046583.1|WP_038728004.1|1046189_1047776_+|F0F1-ATP-synthase-subunit-beta
MADPQATNGTGAACAERDASDVGDARDEGAGRVVAVRGAVVDVAFDGGALPALNEALTIPVDGAAPILAEVHAHLSDAAVRALALGPTGGLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPPLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVLVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAAREADARREAAAAASGAGPGTTSDPASGSAEPQGARHGR
>NZ_CP046583.1|WP_004524981.1|1045960_1046218_-|hypothetical-protein
MPFVACGSATVAPVWLVRRWLHHNGARRPPADLGQETGNRQTKRGIAQSETIDASASGADTVRAASIVDSNQIPQTYAWLQWPCQ
>NZ_CP046583.1|WP_038753816.1|1044035_1045829_-|alpha/beta-fold-hydrolase
MDTRHAPESGAPDAPLPAHPPASYAPESPYRIFDLAKEASVAKLTSGLSPASLQLALADWLIHLAAAPGKRAELATLALRHAALLGQYLLEAATGRTPAAPAQPSPGDRRFRAGAWQLEPYRFWHQSFLLAEQWWRAATRDVPGVSPHHEDVVAFSARQMLDTFAPANYVATNPEIAQRTALTGGANLAQGVWNYLDDVRRLITKQPPAGAEQFELGRNLATTPGRVVFRNHLIELLQYSPTTPDVYAQPVLIVPAWIMKYYILDLSAHNSLIRYLVGEGHTVFCISWRNVDASDRDLSLDDYRKLGVMDALDTIGAIVPGEKIHATGYCLGGTLLSIAAAAMANTGDDRLASVTLLAAQTDFAEPGELQLFIDDSEIHFLESMMWERGYLGAHQMAGSFQLLMSNDLIWSRVIHDYLLGERTPMIDLMAWNADSTRMPYRMHSEYLRHLFLDNDLATNRYVIDGQTVSVHNIRAPFFVVGTEHDHIAPWRSVYKIHYLSGSDVTFALTAGGHNAGIVSEPGHAKRHYRMKMTAAAAPSISPDEWLAGATDFEGSWWPAWHAWLARHSSPQRVAPPPLGKPGAHTLGDAPGTYVFQK
>NZ_CP046583.1|WP_050020039.1|1042621_1044052_-|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase
MCSRNKECRVDREILQNRPFDSLAIGDSASLVRTASRDDIDLFAAMSGDVNPAHLDAAFAAHDLFGHVVVHGMWTGALVSAVLGTKLPGPGTIYLDQTLEFRHPVAPGDTITATVTVAEKRPEKRIVLLDTRCTNQDGHVVLRGTATVIAPDTPITWERVPGPEVAVRRHDRYETFVRDAREQPPLRTAIVHPCSPDALRAAIDARDANLIEPILIGPQAKIRAIADAAGVDLAGVPIEAVEHSHAAAARAVEMGGAGEVAALMKGSLHTDELLAAVIGPASRLRTERRISHVYAMDVPAYPKPLLITDAAINIAPTLEQKRDICQNAVDLLHVLGVERPRVAVLAAVETVNPKMPSTLDAAALTVMAARGQIAGAIVDGPLAFDNAVSAVAAMSKGIASPVAGDADVLLVPDLEAGNMLAKQLMYFAGADAAGLVLGARLPIILTSRADSLRVRIASAALAKLVAERTRAGALAS
>NZ_CP046583.1|WP_004529184.1|1041446_1042625_-|acetate/propionate-family-kinase
MSEPLLLTFNAGSSTLKIGLYSVANGEPAPLGRGKIDFNRAPLQFEYANGGEAHAVPLAAPVTDDLHAVLDEALGWIDAHLSVHELVSVGHRVVHGGDTFDGPVRIDERTLDAIAALVPLAPLHQPQSVRLIRALRHLRPHLPQVASFDTAFHRTQSDLVRRFALPRALFDAGIKRYGFHGLSYRYVAGRLRERHPSIARGKVVAAHLGSGASLCALDAGVSRDTSMGFSTLDGIPMATRCGALDAGVVLHLQKTLGRTLDDVEQMLYHRSGLLGVSGVSGDARALLADPSAGARDALELFAFRIAGETARLAATLGGLDALVFTAGIGEHQPQTRAAVCERLRWLGVELDAHANARNAETVSRDGSRVAVLVVPTDEEQVIARDAASVLHA
>NZ_CP046583.1|WP_011204277.1|1040899_1041070_+|hypothetical-protein
MLVSRAHGPKLRRRRARARRQSPAAILPRDLLQLRPLRARPLSAPADAARVATDDR
>NZ_CP046583.1|WP_038759041.1|1050701_1052690_+|F0F1-ATP-synthase-subunit-alpha
MTPTPDAPAAADAATGAGWLARRRGALARVALAPVAQAIGRVERVADGIAFVSGLKDTMLNEVLRFEGGVTGFAHTLDEDLISVVLLDPDAGVRAQTAVARTGAVLEVPAGPQLLGRVVDPLGRPLDGGAPLDAAHTLPIERAAPAIIERDLVSEPLDTGVLIVDALFTIGRGQRELIIGDRATGKTSLAIDAIVNQRHSDVICVYVAIGQRASAVRRVIDAVRRYGAPERCVFVVAPAACAPGLQWIAPFAGFSIAEYFRDRGQHALVVVDDLTKHAATHRELALLTREPPGREAYPGDIFYVHARLLERAAKLSAALGGGSLSALPIAETDAGNLAAYIPTNLISITDGQIVLDSALFAANQRPAVDVGLSVSRVGGKAQHPALRAASGRLRLDYAQFLELEAFTRFGGLTDARLRAQITRGERIRALITQPRFRALRTLDEVVLLKALAAGALDAMSPDLVAPLRERLPAWLDARIAALTPALAPPRDWLADDAALDALAESVGELIERIAADAARRATAGMPAEDAAGDIGGAFGGEQARGDADRDADHGANREVSPEASREVSREVSHEADRDAAADAARVAGRAPGRAEPDRAAPRAMPDGPPRAQADGDRASASRPRPDARGDAARTAPSPQGGAETNVNADANVDAEAEARHKR
>NZ_CP046583.1|WP_038759043.1|1052686_1053535_+|F0F1-ATP-synthase-subunit-gamma
MSDKLAAIEARTDTARQLQTVIGAMQGVAAARAHEAQQRLPGIRASAATVGAAIGDALSAGARSGDTAAGARAAPRARLVIVLCSEQGFVGAYNAQLIEHATRPEPSVSREYMMVGSRGAMLADAGGVPLVWRTPMAARADDVVHLANRITDALYAHLAKRGAQPVSIVHAMPGGAARLEVTERRLLPFDYARFDTAPRAQPPLVHLPPATLLAELAQAYVFVELCEAAMLAFAAENEARTRAMIAARESVERALGDLLQAYRIARQDEITADIVELAASGL
>NZ_CP046583.1|WP_004529178.1|1053741_1054767_+|alcohol-dehydrogenase-AdhP
MAQYMKAAVVHAFGEPLRIEEVPVPTPGAGQILVNVKASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGSYAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVTDTRPGQWIAISGIGGLGHVAVQYAKAMGLHVVAVDVAPQKLELARKLGAAFVVDASKDDPAAVIQKEIGGVHGVLVTAVSRGAFAQALGMVRRGGTVSLNGLPPGDFPLPIFSTVLNGITVRGSIVGTRRDLQESLDFAAEGLVRAHIHRDKLEHINGVFSALREGKVDGRIVLTGQ
>NZ_CP046583.1|WP_038762638.1|1054843_1055347_+|hypothetical-protein
MRGAGRASPSRARRYENVSKEPNTHREAGAPVHRYRLQVRNMNGECRTYELRLSSLDDGYTLEIDEWLNFPDTHLGDVTPVHVSRPVQFAVPAHEFYRRRRAFRTELIESVAAALRAGEVVRMRDSPDEYPGGHAGNPWVNWIRADLRANPGGRPRPVGDDMQDLIH
>NZ_CP046583.1|WP_038761138.1|1055404_1055914_-|hypothetical-protein
MRRIYFLLPDADTARAIVDELLLKRIEWRHIHVVANDRVPLENLPEASIAQSSDLLPALARGTAAGGVTGALAGLAAIAFPPAGLTIADGAVVAFAIAGAGFGAWVGTMIGVSVPNTRLKHFEDAVDNGELLMMIDVHRDRVEEIEALVKQHHPNAHLEGTDPTIPAFP
>NZ_CP046583.1|WP_004524990.1|1056454_1058020_+|methyl-accepting-chemotaxis-protein
MPTLSFRQKLWLPLVISLIALLLVSISSAWLSYQTRMEERRNDLTNVAHVGLSIVREYAALAQRGVLTDAQARKEALERLRSVRYGSDGYFIVIDSSPRMIMHPIKPDTVGKDLRHVADADGRHHYLTFASVAQSPQGGFVDYVFAHPNAHPAKAVDKLGYVIRYAPWDWIISTGAYIDDIQAAFAKSLCLSAGVFALLAALLALSVVYTNRGIERMIGGDPRIAAHMAGVIASGDLATPFATRREDRSSLMFAISQMRDALANAVAQIRASAGYVATTAGEIADSNMDLSSHTECQATALQQAASSMQRLTERVRDTADRARAASELAGSAARITDRGGDMVVRVVAAMNDIRAESRKMVDIIGVIEGIAFQTNILALNAAVEAARAGNEGRGFAVVASEVRVLAQRSASAAKDIRALIGRAAERVGNGAELVEATGATIGEAQHAICRVTGIVQDIAAAATDQSQGLEQINAAVSQMDSVTRRNATLVEHAAIAAQSLNEQSRCLQDAVAAFRTEALGC
>NZ_CP046583.1|WP_009926814.1|1058111_1058270_-|hypothetical-protein
MRARRSHGAGIRLGFDKPSGTHSSPHDGWVQTDIATRLPQISLMPDQALANE
>NZ_CP046583.1|WP_038753797.1|1058375_1060211_-|response-regulator
MHVEVFAQHPSCPGWHGEMARRIRAFDWSATELGPLERWPASLVAAVRTVLASPVPLVMLWGSSGYMLYNDAYAAFAGGRHPYLLGQPVELGWPEVADFNRNVMRTCLAGGALSYRDKALVLLRNGRPEEVWMDLYYSPLAGDDGAPAGVLAVVVETTERVLAARHRDRAKAALHETNAELRRLTETLEQRVADAITERASIEEQLRQAQKMEAIGSLTGGIAHDFNNVLQVVSSNLQMLSAELGEDARAQRRIASAANAVARGAQLASHLLAFARRQPLAPAVLEPRGLIDGMREMLHRALGESVHVDADLRDDVWNVLADRHQFENALLNLAINARDAMRGEGTLKITACNIVLEAGRHARRNGLPPGEYVAFDIADNGVGMTPDILERVFEPFFTTKPDGQGTGLGLSMVFGFVKQSGGHTSIESAPGRGTTVRLLLPRCREAPAGEPAAQRRLPAEGGRETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIKGGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVLDAHASARRAHGARHAQADPRKKTAAARVQR
>NZ_CP046583.1|WP_004544573.1|1060360_1061485_-|ABC-transporter-permease
MRRLAIVYRLGVKELWSLVRDPILLVLIAYTFTASIYSAATARPDTLHMAPIAIIDEDASPLSARIASAFFPPQFALPRMVTLAEADRGMNAGDFTFALDIPPNFQRDVLAGRPAQIQLNVDATRMSQAFTGNGYVQQIVSGEIDDFARRYRANTAPPVDIAMHMRFNPNLDQTWFGSLMEVINNVTLLSMVLTGAALIREREHGTIEHLLVMPVTPGEIMLAKVWSMGLVVACAAAFSLAFVVRGALHVPIEGSVALFVIGMAIHLFATTSMGIFLATLVRSMPQFGMLLVLVLLPLQLLSGSLTPRESMPFAVQNIMLAAPTTHFVEIGQAILYRGAGIETVWRQFLILAVIGTALFLLSLKRFRKTIGQMA
>NZ_CP046583.1|WP_038761136.1|1061487_1064700_-|ATP-binding-cassette-domain-containing-protein
MSAPSVVRFSDVSLRYGKTVALERITLEIPAGLTIGLIGPDGVGKSSLLALAAGARALQTGAVDALGGDMRSRRHRERVCRRIAYMPQGLGKNLYPTLSVEENLQFFARLFGHDADERRRRIDALTRSTGLFAFLSRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWDLIARIRSERPAMSVIVATAYMDEAQRFDWLIAMDAGRVLATGAPAELLARTGCDSLEAAFIALLPEDERRGHKPVTLEPLRADAQTGTAIEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPATEGTAQLFGKTVDPKDINTRRRVGYMSQAFSLYSELTVRQNLVLHARLFGVPAAEIDARVDEMARRFGLADIYDMLPDSLPLGMRQRLSLAVAMVHKPELLILDEPTSGVDPVARDSFWQLMIDLARRDRVTIFISTHFMNEAQRCDRISLMHAGRVLASDAPAALVRACGAATLEEAFIGYLVDASAQEAQGGAGGRPGAGERAAGESLAGRGAATDGDADGAHARPAAYANGAAQHRAPDADAAGTDVAAETGARDDARTAHAAGHSAGNDVRATVGSEVGSDVGSDVGAESGSERGVAHGAERAREPAADAGAAIDVEPGASAESATAAVAPARHAESAATSPRAGNAPAGTPFAAAPPSHAAPAEPPHRAFSAQRALSYMWREMLELRRDPVRATLALIGSLVLMCVIGIGISLDVEDLTYAVLDRDQTELSHDYALNLSGSRYFVERPPIADYAALDRRMRDGELSLAIEIPPNFARDVERGAPAQIGMWIDGAMPQRAETIRGYAIGMHTMWLADKARHRLGVTLAPRAEVVTRYRYNPDVKSLPAMIPAVMPLLLLMLPAMLTALAVVRERELGSILNLYVTPVTRTEFLIGKQVPYVVLAMLNFLLMTMLARIAFDVPVKGSFMTLLLAVLIFNVVATGIGLLASTFTRSQVAAIVMTIIGTMIPTVQFAGLLTPLSSLEGTGRLIGLVYPATYMLSISRGVFNKALSLHDLYSQFWPLAACVPVILGATILLLKKQER

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Crispr_ID: NZ_CP046583_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046583_4

1722489-1722669

Orphan

Consensus_repeat	Method
AACCGACAACCGATAACCGATAACCGATAACCGATAACCGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP046583_4

>merge|NZ_CP046583|4|1722489-1722669|CRISPRCasFinder
AACCGGTCACCGGTGAGCGACATCCGACGAGCGATGGCCGATGGCCGATGGCCGGCGAACGGCGACCGGCAACCGACAACCGACAACCGATAACCGACAACCGACAACCGATAACCGATAACCGATAACCGATAACCGATAACCGATAACCGATAACCGATAACCGATAACCGATAACCGA

>NZ_CP046583|4|4|1722489-1722669|CRISPRCasFinder
AACCGGTCACCGGTGAGCGACATCCGACGAGCGATGGCCGA	TGGCCGATGGCCGGCGAACGGCGACCGGC
AACCGACAACCGACAACCGATAACCGACAACCGACAACCGA	TAACCGATAACCGATAACCGATAACCGAT
AACCGATAACCGATAACCGATAACCGATAACCGATAACCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046583.1\|WP_038739773.1\|1715566_1717129_-\|nitrite-reductase,-copper-containing	unknown	unknown	gnl\|CDD\|131429
NZ_CP046583.1\|WP_004198529.1\|1728191_1729661_+\|mannitol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223324
NZ_CP046583.1\|WP_004184911.1\|1717546_1717987_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863
NZ_CP046583.1\|WP_004528767.1\|1733408_1735214_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197270
NZ_CP046583.1\|WP_038733232.1\|1721531_1722386_-\|ammonia-dependent-NAD(+)-synthetase	unknown	unknown	gnl\|CDD\|234831
NZ_CP046583.1\|WP_038759747.1\|1714705_1715542_-\|formylglycine-generating-enzyme-family-protein	unknown	unknown	gnl\|CDD\|224182
NZ_CP046583.1\|WP_004201924.1\|1718032_1718875_-\|phosphoenolpyruvate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|378168
NZ_CP046583.1\|WP_004525356.1\|1714094_1714709_-\|SCO-family-protein	unknown	unknown	gnl\|CDD\|239266
NZ_CP046583.1\|WP_004200991.1\|1722852_1723758_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP046583.1\|WP_038759743.1\|1726061_1727270_-\|D-galactonate-dehydratase-family-protein	unknown	unknown	gnl\|CDD\|237901
NZ_CP046583.1\|WP_004557766.1\|1718877_1720095_-\|UPF0261-family-protein	unknown	unknown	gnl\|CDD\|179420
NZ_CP046583.1\|WP_004528784.1\|1712016_1713042_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
NZ_CP046583.1\|WP_004525366.1\|1731928_1732687_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP046583.1\|WP_004198526.1\|1724981_1726013_-\|Zn-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182229
NZ_CP046583.1\|WP_080275352.1\|1729961_1731317_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
NZ_CP046583.1\|WP_080016188.1\|1713186_1713576_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046583.1\|WP_004198523.1\|1723843_1724029_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046583.1\|WP_011326133.1\|1727291_1728059_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP046583.1\|WP_076856926.1\|1722743_1722875_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046583.1\|WP_038759745.1\|1720206_1721277_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237537

Protein	Function_ID	Function_description	E-value
NZ_CP046583.1\|WP_004198529.1\|1728191_1729661_+\|mannitol-dehydrogenase-family-protein	gnl\|CDD\|223324	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism].	8.4419e-143
NZ_CP046583.1\|WP_004198526.1\|1724981_1726013_-\|Zn-dependent-oxidoreductase	gnl\|CDD\|182229	PRK10083, PRK10083, putative oxidoreductase; Provisional.	0
NZ_CP046583.1\|WP_038733232.1\|1721531_1722386_-\|ammonia-dependent-NAD(+)-synthetase	gnl\|CDD\|234831	PRK00768, nadE, ammonia-dependent NAD(+) synthetase.	1.95397e-170
NZ_CP046583.1\|WP_038759747.1\|1714705_1715542_-\|formylglycine-generating-enzyme-family-protein	gnl\|CDD\|224182	COG1262, COG1262, Uncharacterized conserved protein [Function unknown].	1.84302e-36
NZ_CP046583.1\|WP_004184911.1\|1717546_1717987_-\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	9.622e-40
NZ_CP046583.1\|WP_004201924.1\|1718032_1718875_-\|phosphoenolpyruvate-hydrolase-family-protein	gnl\|CDD\|378168	pfam09370, PEP_hydrolase, Phosphoenolpyruvate hydrolase-like. This domain has a TIM barrel fold related to IGPS and to phosphoenolpyruvate mutase/aldolase/carboxylase.	0
NZ_CP046583.1\|WP_004200991.1\|1722852_1723758_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	8.9169e-09
NZ_CP046583.1\|WP_004525356.1\|1714094_1714709_-\|SCO-family-protein	gnl\|CDD\|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	3.75898e-41
NZ_CP046583.1\|WP_004528767.1\|1733408_1735214_+\|hypothetical-protein	gnl\|CDD\|197270	cd09173, PLDc_Nuc_like_unchar1_2, Putative catalytic domain, repeat 2, of uncharacterized hypothetical proteins similar to Nuc, an endonuclease from Salmonella typhimurium. Putative catalytic domain, repeat 2, of uncharacterized hypothetical proteins, which show high sequence homology to the endonuclease from Salmonella typhimurium and vertebrate phospholipase D6. Nuc and PLD6 belong to the phospholipase D (PLD) superfamily. They contain a short conserved sequence motif, the HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), which characterizes the PLD superfamily and is essential for catalysis. Nuc and PLD6 utilize a two-step mechanism to cleave phosphodiester bonds: Upon substrate binding, the bond is first attacked by a histidine residue from one HKD motif to form a covalent phosphohistidine intermediate, which is then hydrolyzed by water with the aid of a second histidine residue from the other HKD motif in the opposite subunit. However, proteins in this subfamily have two HKD motifs in a single polypeptide chain.	3.97048e-43
NZ_CP046583.1\|WP_038759743.1\|1726061_1727270_-\|D-galactonate-dehydratase-family-protein	gnl\|CDD\|237901	PRK15072, PRK15072, D-galactonate dehydratase family protein.	0
NZ_CP046583.1\|WP_004557766.1\|1718877_1720095_-\|UPF0261-family-protein	gnl\|CDD\|179420	PRK02399, PRK02399, hypothetical protein; Provisional.	0
NZ_CP046583.1\|WP_004528784.1\|1712016_1713042_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	5.08873e-90
NZ_CP046583.1\|WP_004525366.1\|1731928_1732687_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	7.6363e-81
NZ_CP046583.1\|WP_080275352.1\|1729961_1731317_+\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.42407e-76
NZ_CP046583.1\|WP_011326133.1\|1727291_1728059_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	7.86651e-41
NZ_CP046583.1\|WP_038739773.1\|1715566_1717129_-\|nitrite-reductase,-copper-containing	gnl\|CDD\|131429	TIGR02376, Copper-containing_nitrite_reductase, nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification. [Central intermediary metabolism, Nitrogen metabolism].	1.86767e-119
NZ_CP046583.1\|WP_038759745.1\|1720206_1721277_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	9.82101e-10

>NZ_CP046583.1|WP_038733232.1|1721531_1722386_-|ammonia-dependent-NAD(+)-synthetase
MSRPDQAARRRAIAAELHVSPTFDARDEAERRIGFVADYLRTAGLRACVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRLPYGAQHDEADARRALAFVRADETLTVDVKPAADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDHAAESVMGFFTKFGDGGADVLPLAGLTKRRVRALARMLGADEPLVLKTPTADLETLRPQRPDEHAYGITYEQIDDFLEGKPMDDVVAETVLRFYDATRHKRALPYTMFDWPGHPA
>NZ_CP046583.1|WP_038759745.1|1720206_1721277_+|TetR/AcrR-family-transcriptional-regulator
MPTTVSAPETLSETRTQTRELLLQTALSMLEQGWFPSITELANASGVSRATAYRYFPSQAALVSTVVDESLGPVLQWQPTSTSVEARVNELLDFAYPRMEQHEGALRAALQVALHQWANERARRAQDEPKYRRGNRRRLLTLAVEPMVRAGVDPAVAERLAQALSLLYGTEAMVVLKDIWGLDFRQFMNVIKWMSSALVRATLAQAGGAAGAGGGAEAGAGGAGVAEGAAQGAAEGTAEGAAQGAAEGTAEGTAAAGGGAAREQVARDAGAAQHASPDGDPAAAGRAAASDGPAAGHGDAPAAGAADPAGDAAGERPEDRASASPTSSITSSSSSSSSTPSTPSASPASGDDGRDA
>NZ_CP046583.1|WP_004557766.1|1718877_1720095_-|UPF0261-family-protein
MVPHRTRIYVAATVDTKGAEAHFVKDRIADAGLAAVVVDLSTRVPGRAADIGADAVAAHHPDGAAAVFCGDRGRAIAAMAVAFEHYIKSRDDVAALIGIGGSGGTALVTPAMQALPIGMPKLMISTMASGDVSAYIGSSDIAMLYSVADIAGLNRISRQVLANGAHMIAGAVRDMQPPHADLKPALGLTMFGVTTPCIQAVTSRLDARFDCIVFHATGKGGPAMEKLADSGLLDGVLDLTTTEVCDLLMGGVLACGADRFDLIARSRVPYVGSCGALDMVNFGHIDTVPPRYAQRLLYKHNPQVTLMRTTPDENRRIGEWIGAKLNACDGPVRFLIPEGGVSALDAPGQAFWNPQADEALFDALEATVVQTERRRLVRVPAHVNDARFADAAVEHFLSLHAAHRN
>NZ_CP046583.1|WP_004201924.1|1718032_1718875_-|phosphoenolpyruvate-hydrolase-family-protein
MKRLSRVEILEKLRATIARGEPIVGGGAGTGLSAKCEEAGGIDLIVIYNSGRYRMAGRGSLAGLLAYGNANEIVVDMAREVLPVVKSTPVLAGVNGTDPFCNFDAFLDELTRLGFSGVQNFPTVGLIDGNFRANLEETGMGYALEVDMIRLAHRKGLLTTPYVFSEADAIAMTEAGADIVVAHLGLTTGGTIGANTARTLADCVPLVRSWADAAKSVRDDVIVLCHGGPIASPEDAAYILRACPQCHGFYGASSMERLPAETALTDMTRRFKEIDRHAAS
>NZ_CP046583.1|WP_004184911.1|1717546_1717987_-|SRPBCC-family-protein
MNHTSFASSVIDAPIERVWAFFRDFDGLPAFHPAIVESRLEPGPDAYTVGAVRYLTLADGYVREKLLKLDEPNHALEYAIVESTMPVRDYVAGVQLVPVTDSGKTFAQWWANFTTQGVELQPVAESISEHVFAAGFRALADKLRAR
>NZ_CP046583.1|WP_038739773.1|1715566_1717129_-|nitrite-reductase,-copper-containing
MKDLQSIRGQLRATFLSVLLGAVIAASAQAGAATGKVPGDFGPPQGEPLHATLVSPPNVPPPITRRYPAKVIVDLEVVEKVLPIADGVNYTFWTFGGAVPGNFIRVRQGDTVEFHLKNRPDSKMPHNIDLHAVTGPGGGATSSFTAPGHESRFTFKALNEGLFVYHCATAPVGMHVANGMYGLILVEPPEGLPKVDREYYVMQGDFYTNGKYREKGLQSFDMDKAIDERPTYVVFNGAEGALTGERAMRARTDETVRLFVGNGGPNLVSSFHVIGAVFDKVRADGSNVTQNDVQTTLIPAGGAATIEFHTRVPGNYTFVDHSIFRAFNKGALAILKVDGPENKAIYSGKELDAPYSGDAVTAAAGSGPAGAPGTAAGVKGGVKGGASPVRTSAAASAAPLSLPAQVKAGGTVFASTCAVCHQSAGTGLPGVFPPLAGSDFLAANPKRAIGILLHGLNGKVTVNGHDYDSAMPPMAQLTDDEVANVLTYVLNSWNNPGGRISADEVSKARAKAPAVAEAAH
>NZ_CP046583.1|WP_038759747.1|1714705_1715542_-|formylglycine-generating-enzyme-family-protein
MHAPSFRHACRAASAVRLGRVAIVALTLAFAATGAHAARFVRLPGGDFESALPQDVPGRSTPVHIDAFELQDTPVTVRAFAGFLRAHPEWRRDRVAHVFAGPAYLADWADPLHPASPTPPDAPVTGVSWFAARAYCASEGARLPTWLEWEYAAAADATRPDARNDPLWRRQILSWYEQPAARVLPSVGGAPNVYGLRNLHGLIWEWVDDFNALFISGDSRTQGDPDQQRFCGAGAISIVRRDSYAVLMRVALLSSLTGADSTGSLGFRCARSISGDRP
>NZ_CP046583.1|WP_004525356.1|1714094_1714709_-|SCO-family-protein
MKLDYFTARGALALLAAACVATAAHGADAPAAAATPPAATATDSLYQANATLTDQDGKTFRLADLRGTPTLVSMFYTSCKMVCPMLFETIGLTLDAGGEPARKRIKVVAVTVDPDRDSVAVLRKTANAHGLDARWRLARTDRDSTRTVAALLGIQYRKLASGEFNHSSTIVLLDADGRIVAHTNTLGETDPAFVDAMRKQLAAQ
>NZ_CP046583.1|WP_080016188.1|1713186_1713576_-|hypothetical-protein
MEPPKSAASPSATRHEHRSPRGCVARRRLFIPAGCRTIGEPFHEACALPSFTKLPRLIQHDARRFCADALRFARALAPVRRVDPDITPHPPRRFRSRGFSAPAHSSLARIGPPESSNIGCFPDARMPAA
>NZ_CP046583.1|WP_004528784.1|1712016_1713042_-|N-acetylmuramoyl-L-alanine-amidase
MSQSRQTRRDDIANAKRRRFIARASACTAGALASPYAAHAARAAGGKPRDASGAQDVAIDASIASPNQDSRVRTLVLHYTAQTLARSVALLTDPARPVSAHYLVPDAADAGTLFRVYALVPETNRAWHAGVSYWQGERLLNASSIGVEIVNTGFPDADENAPLMRRRWAPFPDAQMAVVGRLAADIAARHEIPPQKVVGHSDIAPGRNLDPGPLFPWRMLHEQYGVGAWPDAIAVEYYRACRPFRGDIAELQAKLLAYGYDTPQTGVLDLRTTDVIAAFQMHFRPARYDGVPDAETVAILDALLDKYIERDRQRLRDGQAALPEKDDRAPAAGSTAAKPLA
>NZ_CP046583.1|WP_076856926.1|1722743_1722875_+|hypothetical-protein
MTHDSRPVPRNRLRRRSCASFAAVRCGCLGRFGRGRVSCGARA
>NZ_CP046583.1|WP_004200991.1|1722852_1723758_-|DMT-family-transporter
MPASSGPLRMLRSASAAAAAAFVALWSTGFIVARAIKPYADPNLYLLARFCGTALLYAGIALAARAPWPAPREWGRHLLAGALLQGFYLSASYWAVAHGLSAGVMALLGALQPLATAALAAPLFGERLAARGWFGMALGIAGVALVLAPKLGDAPAAAGGAPAWAVVAIAIAAVGSITAGSLYQKTSLAKADLRIAVALQNLGAALVAGAAAVALGETRWHGAPALWFSLAWGIGMLSGVAVMLLMAMLRRGEAARATSLLFLAPPLAALQGYALFGETLVPLQLAGFALALAGVTLARRN
>NZ_CP046583.1|WP_004198523.1|1723843_1724029_-|hypothetical-protein
MYRKGIVLEIQFPPQRLNDAAGDPYWIDLTLDEARRLHRQLSARLATEAGANQPLDTFSLD
>NZ_CP046583.1|WP_004198526.1|1724981_1726013_-|Zn-dependent-oxidoreductase
MLSVVVDQPHSMGVREMPTPEPAAGEVRVRVRYAGICGSDLHIFHGKNPFVSYPRVIGHEFVGRIESVGAGVDASRIGEIVAVDPVISCGRCHACAIGRRNVCRSLTVLGVHRDGGFSEYACVPAANAHRIAPEIADTCAAIVEPFAVAANATARTGVLPSDVALIYGAGTVGLTLLQVLKHVYGIRAFIADRLDERLALARKCGAAADEVIHAATETVPDALERRGVDGGPTLIFDAVCHPSILEEAVRLAAPAARIGVLGFSSEPSSIVQAELTKKELTLCASRLNCAMFPQVIEWIADGRVHPEHIVTHTLDFRDVARAFELAERNPRESCKILLDFAAH
>NZ_CP046583.1|WP_038759743.1|1726061_1727270_-|D-galactonate-dehydratase-family-protein
MKIERLNIIVTCPGRNFVTVKIVTDEGVHGLGDATLNGRELAVRAYLEDHVFPCLIGRDPRDIEDIWQYLYRGAYWRRGPVTMTAIAAIDMALWDIKGKLAGMPVYQLLGGKSREGLMVYGHANGRDHDEAIDAAHRHIAAGYRAIRVQSGVPGLAKVYGVGKTAGAYEPAEKGLPPEEPWDTALYLRHTPELFRKVRDALGDAPHLLHDAHHRLTPIEAARLGRDLEPHRLFWLEDATPAENQDAFRLIRSHTTTPLAVGEVFNSIWDCKDLIRDQLIDYIRATIVHAGGITHVRRIADYAAMYQVRTGFHGATDLSPVCMAAAVNFGLWAPNFGIQELMPHTALTDEVFPHNYRFDDGYLVMDDVPGLGVDIDETLAANYPYERAYLPVARLRDGSMWNW
>NZ_CP046583.1|WP_011326133.1|1727291_1728059_-|GntR-family-transcriptional-regulator
MNCTLPRPRMKSPLMSDKEPAEDVVVAALNGFVLDAERSYTQQVHALLRNAIVRGALPPRTALSEAVISATIDVSRTPVREALAQLADERLVQIYRKVGTLVAPISVSMLEEGRFARGTLECANHVDLAQKITPAQLAELARLVDAQRDAVAAHDVDTFFTLDETMHGRMFEFAGRPHVWAMLQPMKRQFDRVRWLLLDRVEDHARRALHEHEQILAHIAARNMALLGASVAVHVDRVNAHLPEVRERAPHYFVD
>NZ_CP046583.1|WP_004198529.1|1728191_1729661_+|mannitol-dehydrogenase-family-protein
MPLLSSDHCRALPPEVSRPRYDRRALRTGIVHLGLGAFHRAHQACYTETLVERGDLRWGIAGVELRRRHTVERLAAQDHLYSVTERAGDAARTRVVGAVHRTLFAPQALATLLGLIADPSVSIVSLTVTEKGYYRRPGGGGLDLDDPAIRRDLAQPHAPSTTLGVLAAGIRLRAAHAPLSVLSCDNMPSNGDTLRALLAQYAEQTDGALARRIRCDVAFPNTMVDRIVPAATPESLDWVQSRIGVRDEAAIVCEPFAQWVFEDRFAGARPRWEDAGALVAADVRPYEKMKLRLLNGSHSAIAYAGQLRGRRTVSDAMADPLIDALARGVMTRELLATLDVPAGYDVRAYCASLIERFRNPALAHRTAQIATDGTQKVPLRWLPALAESAAAGVERPFLERSLAMWLHYVEVARDESGRPLVLEDPGAQALAARLHGAPGATDAVRAALGLIASRDAARWPEALTARVGAHLETVRTRGTDALLRPLLDA
>NZ_CP046583.1|WP_080275352.1|1729961_1731317_+|MFS-transporter
MKETGMHQKTMGWVTVFLLFVVYGINYLDRVALSIVAPMVQRDLGIDAAQMGIVFSTFFVGYALFNFIGGLASDRLGPKRVYVIAVGLWSIFCGMTAITVGFVSLLIVRLLFGMAEGPLCSAANKMVNNWLPRESAATAMGLLSAGSPLGGALAGPIVGVLAAQLGWRPAFWIVCAIGLAWVLVWIATTSDRPAPQASAMPAGGSGAAAAAARAAAAPRACASGGRTADAVHASDAADVPPLRDYLKQPRILATGVAFFGYNYVLFFFLSWFPSYLVQAHHLNIREMSVATVVPWLVGTIGLACGGVISDGIYKLTGNAMLSRRIVLVGCLLGAGVCVAIAGSVRSTQSAIALMSVSLFFLYATGAIYWAIVQDIVAPGRVGAVSGCLHCMGSLSGVIGPAVTGFIVERSGSFVSAFVLAGAIALAGAVLSALFLRNRACDARVLRESPLL
>NZ_CP046583.1|WP_004525366.1|1731928_1732687_+|DeoR/GlpR-transcriptional-regulator
MLAEQRHRYILSELGRAGALSVAQLVNALNVSRETIRRDLNALAARGLVITTHGGALAADRHEPSVSERDASHADAKRAIGRRAAEFVPDGASVLLDSGSTVHAVALALADRHRLSVYTNDWRIAGVLGRRNGNRVTLLGGELSDDEDATFGLDTIHQLAQYHVDFAFVGAGGITPDGTLTDYSRVVAEVRGRMLAAAAAPIVVADHSKFGRVTPVRINGSDAARFLVTERAPDKAMRRALTARGIELVVCG
>NZ_CP046583.1|WP_004528767.1|1733408_1735214_+|hypothetical-protein
MSVSVRSYLSPTLVLLAFDWPDAQRRDDFLGFAIKRTPGFWSADGKTRAATSWLPNRLTFDGPAAHTQGDAPTDQAPIQKFMWWDARIDPPDRGRSFRYDVYPVVGTPASLQVLEAEAGVCAITLPAHVEDGVGTWFNRAVVSSQAFAKQVRALHLADGGAPSPDAALRLRTWLANDLQETFGLMLGADARRAVSAVYHLTDPLWAIPAFDAFGRAHGANALAIVYDAHETKRGSGEPPLPSPNQPAVERLTGVATLAPRDKTRIMHDKFIVAGDETGPARVLTGSANFTAEGIAEQANVLHTFESAALAELYNARARALASNPGIAETARLAPGWSEPVEIGSARVRVSFSPEPRGVRTQIDTIVEAVRGAQHSVAFCLFMPTDAALRDACFAAGERGLMMFGLVNAISARGAQQADADRRDGKTLDAARLANLELYHRSRSNRDVIDAAYFSPATVPDGFETELRLFPGEPAPPYPPVVVHHKFVVIDAEGANPIVYSGSANMSANSEHYNDENLLEIRDARIAGIYLAEFLRLYEHYRARALAIASRRGDGGGSTAGNAGAHGGLALQPDSRWAKKYFVAGSPEEKARIALAAPVAAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP046583_4	4.2\|1722600\|29\|NZ_CP046583\|CRISPRCasFinder	1722600-1722628	29	NZ_CP046583.1	1722642-1722670	1.0
NZ_CP046583_4	4.2\|1722600\|29\|NZ_CP046583\|CRISPRCasFinder	1722600-1722628	29	NZ_CP046583.1	1722649-1722677	1.0
NZ_CP046583_4	4.2\|1722600\|29\|NZ_CP046583\|CRISPRCasFinder	1722600-1722628	29	NZ_CP046583.1	1722656-1722684	1.0
NZ_CP046583_4	4.2\|1722600\|29\|NZ_CP046583\|CRISPRCasFinder	1722600-1722628	29	NZ_CP046583.1	1722663-1722691	1.0

1. spacer 4.2|1722600|29|NZ_CP046583|CRISPRCasFinder matches to position: 1722642-1722670, mismatch: 0, identity: 1.0

taaccgataaccgataaccgataaccgat	CRISPR spacer
taaccgataaccgataaccgataaccgat	Protospacer
*****************************

2. spacer 4.2|1722600|29|NZ_CP046583|CRISPRCasFinder matches to position: 1722649-1722677, mismatch: 0, identity: 1.0

taaccgataaccgataaccgataaccgat	CRISPR spacer
taaccgataaccgataaccgataaccgat	Protospacer
*****************************

3. spacer 4.2|1722600|29|NZ_CP046583|CRISPRCasFinder matches to position: 1722656-1722684, mismatch: 0, identity: 1.0

taaccgataaccgataaccgataaccgat	CRISPR spacer
taaccgataaccgataaccgataaccgat	Protospacer
*****************************

4. spacer 4.2|1722600|29|NZ_CP046583|CRISPRCasFinder matches to position: 1722663-1722691, mismatch: 0, identity: 1.0

taaccgataaccgataaccgataaccgat	CRISPR spacer
taaccgataaccgataaccgataaccgat	Protospacer
*****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP046583_1	1.1\|600925\|24\|NZ_CP046583\|CRISPRCasFinder	600925-600948	24	NZ_CP044333	Methylocystis parvus strain BRCS2 plasmid unnamed2, complete sequence	45028-45051	2	0.917
NZ_CP046583_1	1.1\|600925\|24\|NZ_CP046583\|CRISPRCasFinder	600925-600948	24	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1469126-1469149	3	0.875
NZ_CP046583_1	1.1\|600925\|24\|NZ_CP046583\|CRISPRCasFinder	600925-600948	24	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	413893-413916	3	0.875
NZ_CP046583_1	1.1\|600925\|24\|NZ_CP046583\|CRISPRCasFinder	600925-600948	24	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	177400-177423	3	0.875
NZ_CP046583_4	4.1\|1722530\|29\|NZ_CP046583\|CRISPRCasFinder	1722530-1722558	29	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	445621-445649	4	0.862
NZ_CP046583_4	4.1\|1722530\|29\|NZ_CP046583\|CRISPRCasFinder	1722530-1722558	29	NC_008308	Sphingomonas sp. KA1 plasmid pCAR3 DNA, complete sequence	207220-207248	5	0.828
NZ_CP046583_4	4.1\|1722530\|29\|NZ_CP046583\|CRISPRCasFinder	1722530-1722558	29	NZ_CP025548	Mycobacterium paragordonae strain 49061 plasmid unnamed2, complete sequence	40081-40109	6	0.793
NZ_CP046583_4	4.1\|1722530\|29\|NZ_CP046583\|CRISPRCasFinder	1722530-1722558	29	NZ_CP024583	Roseomonas sp. FDAARGOS_362 plasmid unnamed2, complete sequence	218940-218968	6	0.793

1. spacer 1.1|600925|24|NZ_CP046583|CRISPRCasFinder matches to NZ_CP044333 (Methylocystis parvus strain BRCS2 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.917

gacagggcgcaccccggcgatcga	CRISPR spacer
gacagggcgcaccccagcgagcga	Protospacer
***************.**** ***

2. spacer 1.1|600925|24|NZ_CP046583|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 3, identity: 0.875

gacagggcgcaccccggcgatcga	CRISPR spacer
gacatggcgcaccccggcgaacgc	Protospacer
**** *************** **

3. spacer 1.1|600925|24|NZ_CP046583|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 3, identity: 0.875

gacagggcgcaccccggcgatcga	CRISPR spacer
gacatggcgcaccccggcgatggt	Protospacer
**** **************** *

4. spacer 1.1|600925|24|NZ_CP046583|CRISPRCasFinder matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 3, identity: 0.875

gacagggcgcaccccggcgatcga	CRISPR spacer
gacatggcgcaccccggcgatggt	Protospacer
**** **************** *

5. spacer 4.1|1722530|29|NZ_CP046583|CRISPRCasFinder matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 4, identity: 0.862

tggccgatggccggcgaacggcgaccggc--	CRISPR spacer
cggcagatggccggcgaacggcg--cggccg	Protospacer
.*** ******************  ****

6. spacer 4.1|1722530|29|NZ_CP046583|CRISPRCasFinder matches to NC_008308 (Sphingomonas sp. KA1 plasmid pCAR3 DNA, complete sequence) position: , mismatch: 5, identity: 0.828

tggccgatggccggcgaacggcgaccggc	CRISPR spacer
aggccgatggcgggcggacggcgacggcc	Protospacer
 ********** ****.******** * *

7. spacer 4.1|1722530|29|NZ_CP046583|CRISPRCasFinder matches to NZ_CP025548 (Mycobacterium paragordonae strain 49061 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

tggccgatggccggcgaacggcgaccggc	CRISPR spacer
tccccgatggccggtgcacggcgaccgtg	Protospacer
*  ***********.* **********

8. spacer 4.1|1722530|29|NZ_CP046583|CRISPRCasFinder matches to NZ_CP024583 (Roseomonas sp. FDAARGOS_362 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

tggccgatggccggcgaacggcgaccggc	CRISPR spacer
cggccgacggccggcgcacggcgatccgt	Protospacer
.******.******** *******.* *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

348512 : 414246

Xanthomonas_phage(20.0%)

plate,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004523686.1\|348512_349031_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004523687.1\|349032_350913_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_038759519.1\|350909_351959_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_038759521.1\|351977_353048_+	type VI secretion protein ImpA	NA	NA	NA	NA
WP_038725372.1\|353102_354131_+	fimbrial protein	NA	NA	NA	NA
WP_004553079.1\|354163_355522_+	hypothetical protein	A0A292GJ55	Xanthomonas_phage	1.5e-110	45.5
WP_038759523.1\|355414_358867_-	RHS repeat protein	NA	NA	NA	NA
WP_004523693.1\|358879_359149_-	PAAR motif protein	NA	NA	NA	NA
WP_080002192.1\|359223_361893_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.3e-35	26.0
WP_004529647.1\|361957_362527_-	hypothetical protein	NA	NA	NA	NA
WP_038759527.1\|362685_366594_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_038759529.1\|366608_367910_-	type VI secretion system protein TssL	NA	NA	NA	NA
WP_038734161.1\|367906_369256_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004529642.1\|369930_370413_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004523699.1\|370612_372112_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004523700.1\|372145_372685_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004523701.1\|373062_374739_-	OmpA family protein	NA	NA	NA	NA
WP_080298422.1\|374741_375398_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004529637.1\|375462_376035_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_004533804.1\|378883_379621_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_004523706.1\|379685_380231_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_080297230.1\|381630_383118_+	PhoPQ-regulated protein	NA	NA	NA	NA
WP_038759539.1\|383184_385122_-	hypothetical protein	A0A2C9CZG8	Yersinia_phage	4.5e-07	46.1
WP_153260193.1\|385970_386330_+	hypothetical protein	NA	NA	NA	NA
WP_038759542.1\|386674_388132_+	hypothetical protein	NA	NA	NA	NA
WP_156890222.1\|388406_388985_-	hypothetical protein	NA	NA	NA	NA
WP_004523716.1\|389282_390878_+	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	1.9e-06	33.3
WP_076852438.1\|390988_391612_+	DUF2244 domain-containing protein	NA	NA	NA	NA
WP_038759545.1\|392197_392890_-	hypothetical protein	NA	NA	NA	NA
WP_004523720.1\|393344_393671_+	thioredoxin family protein	NA	NA	NA	NA
WP_004523721.1\|393690_394110_+	YjbQ family protein	NA	NA	NA	NA
WP_004523722.1\|394524_394788_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_144402315.1\|394797_396327_-	DUF2875 domain-containing protein	NA	NA	NA	NA
WP_004528499.1\|401823_402129_-	H-NS histone family protein	NA	NA	NA	NA
WP_004552621.1\|402716_403748_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_004533801.1\|403744_404599_-	ABC transporter permease	NA	NA	NA	NA
WP_004533742.1\|404582_405503_-	ABC transporter permease	NA	NA	NA	NA
WP_004533753.1\|405986_406439_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_009939053.1\|406458_407478_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_080002191.1\|407474_407729_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA
WP_023358215.1\|409091_410261_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.9e-32	30.1
WP_156890255.1\|410848_411469_-	hypothetical protein	NA	NA	NA	NA
WP_009939047.1\|411697_411853_-	hypothetical protein	NA	NA	NA	NA
WP_038760598.1\|412050_414246_-\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA

DBSCAN-SWA_2

814101 : 843750

Acanthocystis_turfacea_Chlorella_virus(20.0%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038761590.1\|814101_815505_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004190689.1\|815520_816837_+	DotU family type VI secretion system protein	NA	NA	NA	NA
WP_004524806.1\|816839_820469_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004190273.1\|821411_821639_-	hypothetical protein	NA	NA	NA	NA
WP_038761588.1\|821637_824268_+	serine/threonine protein kinase	M1I231	Acanthocystis_turfacea_Chlorella_virus	5.0e-09	26.6
WP_004524810.1\|825460_826039_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004190849.1\|826031_827540_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004190698.1\|827599_828091_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_009935240.1\|828109_828658_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_038761586.1\|828662_830534_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_038761600.1\|830530_831973_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_038761585.1\|831951_834618_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.0e-78	30.7
WP_038758213.1\|834614_836819_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.6e-46	29.9
WP_004539259.1\|836834_837545_+	hypothetical protein	NA	NA	NA	NA
WP_144402312.1\|837504_839487_+\|transposase	transposase	S5WIU1	Leptospira_phage	7.9e-31	50.4
WP_080002868.1\|840452_840782_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_076847189.1\|840792_841944_-	hypothetical protein	NA	NA	NA	NA
WP_102619315.1\|842570_843750_+\|transposase	IS3-like element ISBps1 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.2e-60	42.9

DBSCAN-SWA_3

2973188 : 3041041

Aeromonas_phage(25.0%)

plate,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004530063.1\|2973188_2974139_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004554843.1\|2975823_2977527_+	peptidase	NA	NA	NA	NA
WP_004200640.1\|2978927_2980070_-	porin	NA	NA	NA	NA
WP_004198249.1\|2980177_2980300_-	hypothetical protein	NA	NA	NA	NA
WP_004535106.1\|2980296_2981295_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004186939.1\|2981330_2982884_-\|holin	choline-sulfatase	NA	NA	NA	NA
WP_004538952.1\|2983019_2983925_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_038758955.1\|2984068_2984911_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_044596175.1\|2984997_2986653_-	APC family permease	NA	NA	NA	NA
WP_004523141.1\|2986833_2987697_-	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_038756116.1\|2987806_2988952_-	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_004523139.1\|2988972_2990241_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_004530055.1\|2990265_2991051_-	drug:proton antiporter	NA	NA	NA	NA
WP_011852808.1\|2991047_2992220_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_004186901.1\|2992224_2994150_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_038758951.1\|2994152_2996216_-	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_004186987.1\|2996276_2996810_-	4-vinyl reductase	NA	NA	NA	NA
WP_009923711.1\|2996960_2997932_-	membrane dipeptidase	NA	NA	NA	NA
WP_004530801.1\|2998004_2999279_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	5.3e-105	54.1
WP_080298287.1\|2999290_2999554_-	hypothetical protein	NA	NA	NA	NA
WP_004198247.1\|2999712_3000738_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_004523135.1\|3000915_3002115_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	8.4e-12	27.2
WP_038758949.1\|3002624_3003641_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004546670.1\|3003829_3005395_+	glycoside hydrolase 68 family protein	NA	NA	NA	NA
WP_038758948.1\|3005527_3007192_+	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	4.1e-57	31.6
WP_038748841.1\|3011323_3011521_-	hypothetical protein	NA	NA	NA	NA
WP_038739533.1\|3011646_3012642_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_156890252.1\|3015795_3015897_-	hypothetical protein	NA	NA	NA	NA
WP_004524288.1\|3016018_3016918_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_004530793.1\|3017467_3017839_-	hypothetical protein	NA	NA	NA	NA
WP_004190863.1\|3018508_3018868_-	hypothetical protein	NA	NA	NA	NA
WP_004525554.1\|3018926_3022430_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004530043.1\|3022426_3024142_-	OmpA family protein	NA	NA	NA	NA
WP_004525552.1\|3024167_3025529_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004202226.1\|3025525_3026119_-	hypothetical protein	NA	NA	NA	NA
WP_004190606.1\|3026124_3026514_-	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_004525551.1\|3026556_3027273_-	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_004525550.1\|3027275_3028346_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_038759050.1\|3028345_3030562_-	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_023358637.1\|3030565_3032854_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004538025.1\|3033019_3035311_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_038760636.1\|3035301_3038190_-	type VI secretion system ATPase TssH	A0A2I7REQ1	Vibrio_phage	2.4e-60	27.2
WP_004190851.1\|3038192_3039182_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004196180.1\|3039178_3041041_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_4

3204694 : 3215316

Burkholderia_virus(61.54%)

integrase,transposase

attL 3192463:3192478|attR 3224693:3224708

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3192463:3192478	attL	NA	NA	NA	NA
WP_004525420.1\|3204694_3204979_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.4e-10	50.0
WP_004549731.1\|3204962_3205232_-	BrnT family toxin	NA	NA	NA	NA
WP_038759296.1\|3205802_3206078_+	hypothetical protein	Q6JIH4	Burkholderia_virus	1.4e-42	97.8
WP_009923452.1\|3206087_3206219_+	bacteriophage protein Gp48	Q8W6Q2	Burkholderia_virus	2.6e-15	97.7
WP_004557715.1\|3206220_3206328_+	hypothetical protein	Q6JIH6	Burkholderia_virus	8.2e-12	97.1
WP_038759295.1\|3206354_3206576_+	hypothetical protein	NA	NA	NA	NA
WP_038759293.1\|3206560_3206827_-	hypothetical protein	Q8W6Q4	Burkholderia_virus	1.4e-39	94.0
WP_004537646.1\|3207909_3208059_+	bacteriophage protein Gp44	Q8W6Q6	Burkholderia_virus	3.3e-19	100.0
WP_004542585.1\|3208055_3209255_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JX31	Burkholderia_virus	1.1e-224	99.5
WP_004552308.1\|3209973_3210471_+	hypothetical protein	NA	NA	NA	NA
WP_004552310.1\|3210899_3211316_-	type II toxin-antitoxin system HicB family antitoxin	A0A0A8JBA5	Ralstonia_phage	7.2e-27	60.0
WP_009893919.1\|3211360_3211540_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	1.2e-18	74.6
WP_004552312.1\|3212286_3212814_+	hypothetical protein	A4JWV5	Burkholderia_virus	2.8e-60	66.7
WP_004552313.1\|3212810_3213545_+	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	5.1e-52	50.5
WP_009893924.1\|3213554_3214670_+	DUF3396 domain-containing protein	E5E3X7	Burkholderia_phage	8.6e-176	80.4
WP_004552315.1\|3214740_3215316_-	recombinase family protein	A0A219Y9V9	Aeromonas_phage	1.0e-23	39.6
3224693:3224708	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046584

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP046583

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection