CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046603	Lysobacter soli strain XL170 chromosome, complete genome	12 crisprs	WYL,DinG,DEDDh,csa3,cas3,Cas9_archaeal,RT	1	3	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046603_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046603_1

128421-128519

Orphan

I-E

Consensus_repeat	Method
CATTCCCGCGAAGGCGGGAATCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046603_1

>merge|NZ_CP046603|1|128421-128519|CRISPRCasFinder
CATTCCCGCGAAGGCGGGAATCCACGTGCCCGGGATGTCACGGCTTCCGAAGCGGTCATGGCTTCCAAAAGCTGTCATTCCCGCGCAGGCGGGAATCCA

>NZ_CP046603|1|1|128421-128519|CRISPRCasFinder
CATTCCCGCGAAGGCGGGAATCCA	CGTGCCCGGGATGTCACGGCTTCCGAAGCGGTCATGGCTTCCAAAAGCTGT
CATTCCCGCGCAGGCGGGAATCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046603.1\|WP_157028860.1\|115877_116795_-\|ligand-binding-protein-SH3	unknown	unknown	gnl\|CDD\|211400
NZ_CP046603.1\|WP_115844739.1\|121874_122084_+\|YdcH-family-protein	unknown	unknown	gnl\|CDD\|377305
NZ_CP046603.1\|WP_157028862.1\|118085_118958_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP046603.1\|WP_157028873.1\|135932_138113_+\|beta-glucosidase	unknown	unknown	gnl\|CDD\|185053
NZ_CP046603.1\|WP_157031535.1\|122108_123593_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|273553
NZ_CP046603.1\|WP_157028865.1\|123598_128065_-\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NZ_CP046603.1\|WP_157028869.1\|132046_132538_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP046603.1\|WP_157028866.1\|128712_129981_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340946
NZ_CP046603.1\|WP_115844751.1\|115529_115769_-\|Sec-independent-protein-translocase-subunit-TatA	unknown	unknown	gnl\|CDD\|235091
NZ_CP046603.1\|WP_157028864.1\|120909_121809_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	unknown	unknown	gnl\|CDD\|236737
NZ_CP046603.1\|WP_157028867.1\|130587_131046_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376530
NZ_CP046603.1\|WP_115844743.1\|119878_120784_-\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|234726
NZ_CP046603.1\|WP_157028868.1\|131021_131450_-\|ribonuclease	unknown	unknown	gnl\|CDD\|238340
NZ_CP046603.1\|WP_157028870.1\|132574_133168_-\|superoxide-dismutase-family-protein	unknown	unknown	gnl\|CDD\|376292
NZ_CP046603.1\|WP_157028863.1\|118965_119769_-\|DUF45-domain-containing-protein	unknown	unknown	gnl\|CDD\|307807
NZ_CP046603.1\|WP_115844727.1\|131472_131775_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288556
NZ_CP046603.1\|WP_157028861.1\|117048_118071_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
NZ_CP046603.1\|WP_157028872.1\|134745_135798_-\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226370
NZ_CP046603.1\|WP_115844733.1\|130332_130566_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_157028871.1\|133312_134746_-\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|273818

Protein	Function_ID	Function_description	E-value
NZ_CP046603.1\|WP_157028860.1\|115877_116795_-\|ligand-binding-protein-SH3	gnl\|CDD\|211400	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module. The SYLF domain is named after SH3YL1, Ysc84p/Lsb4p, Lsb3p, and plant FYVE, which are proteins that contain it. It is also called DUF500 and is highly conserved from bacteria to mammals. Some members, such as SH3YL1, Ysc84p, and Lsb3p, which represent the best characterized members of the family, also contain an SH3 domain, while family members from plants and stramenopiles also contain a FYVE zinc finger domain. Other members only contain a stand-alone SYLF domain. The SYLF domain of SH3YL1 binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity.	3.421e-79
NZ_CP046603.1\|WP_115844739.1\|121874_122084_+\|YdcH-family-protein	gnl\|CDD\|377305	pfam04325, DUF465, Protein of unknown function (DUF465). Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C terminal of the motor domain (Myosin pfam00063, Kinesin pfam00225). Members of this family may form coiled coil structures.	3.36466e-10
NZ_CP046603.1\|WP_157028862.1\|118085_118958_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.35872e-20
NZ_CP046603.1\|WP_157028873.1\|135932_138113_+\|beta-glucosidase	gnl\|CDD\|185053	PRK15098, PRK15098, beta-glucosidase BglX.	0
NZ_CP046603.1\|WP_157031535.1\|122108_123593_-\|FAD-binding-protein	gnl\|CDD\|273553	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.	0
NZ_CP046603.1\|WP_157028865.1\|123598_128065_-\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NZ_CP046603.1\|WP_157028869.1\|132046_132538_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.42285e-08
NZ_CP046603.1\|WP_157028866.1\|128712_129981_+\|MFS-transporter	gnl\|CDD\|340946	cd17388, MFS_TetA, Tetracycline resistance protein TetA and related proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of tetracycline resistance proteins similar to Escherichia coli TetA(A), TetA(B), and TetA(E), which are metal-tetracycline/H(+) antiporters that confer resistance to tetracycline by an active tetracycline efflux, which is an energy-dependent process that decreases the accumulation of the antibiotic in cells. TetA-like tetracycline resistance proteins belongs to the Eukaryotic Solute carrier 46 (SLC46)/Bacterial Tetracycline resistance (TetA) -like (SLC46/TetA-like) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.41778e-142
NZ_CP046603.1\|WP_115844751.1\|115529_115769_-\|Sec-independent-protein-translocase-subunit-TatA	gnl\|CDD\|235091	PRK02958, tatA, Sec-independent protein translocase subunit TatA.	4.31695e-31
NZ_CP046603.1\|WP_157028864.1\|120909_121809_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	gnl\|CDD\|236737	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional.	0
NZ_CP046603.1\|WP_157028867.1\|130587_131046_-\|hypothetical-protein	gnl\|CDD\|376530	pfam01337, Barstar, Barstar (barnase inhibitor).	8.47579e-22
NZ_CP046603.1\|WP_115844743.1\|119878_120784_-\|recombination-associated-protein-RdgC	gnl\|CDD\|234726	PRK00321, rdgC, recombination associated protein; Reviewed.	1.25837e-124
NZ_CP046603.1\|WP_157028868.1\|131021_131450_-\|ribonuclease	gnl\|CDD\|238340	cd00607, RNase_Sa, RNase_Sa. Ribonucleases first isolated from Streptomyces aureofaciens. In general, ribonucleases cleave phosphodiester bonds in RNA and are essential for both non-specific RNA degradation and for numerous forms of RNA processing. RNAse Sa is a guanylate specific endoribonuclease which belongs to the superfamily of microbial ribonucleases. Typical of this sub-family, the enzyme hydrolyses the phosphodiester bonds of RNA at the 3' oxygen end of guanosine residues to yield oligonucleotides with the guanosine-2',3'-cyclophosphate at the 3' end and the hydroxyl group at the 5' end. The terminal guanosine-2,3'-cyclophosphate is hydrolysed by guanyl RNAses to give guanosine-3'-phosphate.	5.0524e-38
NZ_CP046603.1\|WP_157028870.1\|132574_133168_-\|superoxide-dismutase-family-protein	gnl\|CDD\|376292	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC). superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.	9.1399e-46
NZ_CP046603.1\|WP_157028863.1\|118965_119769_-\|DUF45-domain-containing-protein	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	3.50249e-47
NZ_CP046603.1\|WP_115844727.1\|131472_131775_-\|hypothetical-protein	gnl\|CDD\|288556	pfam11720, Inhibitor_I78, Peptidase inhibitor I78 family. This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.	1.0812e-11
NZ_CP046603.1\|WP_157028861.1\|117048_118071_+\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	4.45682e-142
NZ_CP046603.1\|WP_157028872.1\|134745_135798_-\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	5.78599e-106
NZ_CP046603.1\|WP_157028871.1\|133312_134746_-\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0

>NZ_CP046603.1|WP_157028865.1|123598_128065_-|glutamate-synthase-large-subunit
MQQQYRPGPVGLYDPRDERDACGFGLIAQLDDAPSRAIVDRAIEALVRMTHRGGIAADGLSGDGCGLLIRQPDAFLRALARESGIALGAHYASGLVFLPHDETEAARAKDEFAAQLQRERVDVAGWRVVPVDLAACGELAKRTMPRIEQIFVKPAGAFDAASFQRSLFLARRRAEQRLRELPDFYVVSLSTASIGYKGMVLPNRLSQLYPDLQRSDLAASVVVFHQRFSTNTTPRWPLAQPFRLLAHNGEINTISGNRAWAQARAHVWRTPNLELTEFDPVITMDGSDSQSLDNMLELLQAGGMDLLKAMRILIPPATQSLEYKDADLAAFYEYYALNTEPWDGPAGIVTVDGRYAACTLDRNGLRPARWMRTRDRHFLIASEAGVWERPAEEIEAKGKLGPGEMIAVDLYLGEVLDSEAIDRINRARAPYKRWLKQGVTYLQTELIDPALAAEPFDSETLTRFQKLFQLTREEREQVLRPLAETEQEAVGSMGDDVPMAVLSQQVRPLYDQFRQAFAQVTNPPIDPLREDCVMSLATQLGREGNVFVDGPGNVDHIHLNSPVLSQRKLRQMLAMEQYENAHALIHLHYAPEEGLKAALERICAEAETATRDGKVLLVLSDRYPVEGRLMAHALLATGAVHQHLVRAGLRCESNLIVETGTARDPHHFACLIGVGATAVYPYLAYQTLHDLGVRGILKTKHGQVAEIGRSYRRGIKKGLLKIISKMGISTIGSYRGARLFEIVGLDREVVDLCFAGTPSRIGGAGFAELHEDAATLAEHAWNANALPNIGGLLKYTPGGEYHLFNPDVVMNLQRAVSTGDWNDWQRYAAAVNERPTAALRDLLDVDTSDAIAIPLEDVEPVSAIVRRFDSAAMSLGALSPEAHEALAIAMNRLGGRSNSGEGGEDPARYGTDKVSKIKQIASGRFGVTPEYLVNAEVLQIKVAQGAKPGEGGQLPGHKVNELIARLRYAMPGIGLISPPPHHDIYSIEDLAQLIFDLKQVNPQALVSVKLVSHAGVGTIATGVAKAGADLITISGHDGGTGASPISSIRYAGTPWELGLSEARQALVSNDLRDRVILQTDGGLKSGLDVVKAALLGAESFGFGTAPMIALGCKYLRICHLNNCATGVATQDDALRREHFTGLPDRVENFFRLLAEEVRFWLTQLGVRTLGELVGRTDLLKQLEGDGERQHKLDLAPLLAGSGLAHGGHCGVPQPSADATGLAAQLDIDLAEPIASKRGGAYAYTIRNTDRSIGARLSGRIARLHGDRGMVDAPISLRFDGTAGQSFGAFNAGGLQFELHGEANDYVGKGMAGGRIVIRPPMGARYTAHETPIIGNTCLYGATGGELYAAGRAGERFGVRNSGATAVVEGAGDHCCEYMTGGVVAVLGRTGLNFGAGFTGGMAYVLDTERDFVDRYNHELIDILRIASDGFENHRSHLRELLEAHVQLTGSVWARKILDEMRDFLGKFWLVKPKAASLESLAENLRRAA
>NZ_CP046603.1|WP_157031535.1|122108_123593_-|FAD-binding-protein
MDSKKPVFAFRETPRQMPSRIPLELRRSGDWSELYGRFGEAEAKHQASRCLDCGNPYCSWKCPLHNYIPNWLELAREGRIFEAAALAHETNPLPEICGRVCPQDRLCEGSCTLNDGFGAVTIGAVEKYISDRALADGWRPDLSKVAATGKRVAVIGAGPAGLSCADRLARAGIEAVVFDRYEQIGGLLHFGIPSFKLEKSVLQTRRDVLEGMGVQFRLGVEIGRDVGLDDLLAEFDAVFLGLGSYRYTDGGLPGQDLKGVLPALPFLVHNGRLVHGDDEAQGKPIAGWEDRVALPDLHGKRVVVLGGGDTGMDCVRSAVRLGAARVTCAYRRDEANMPGSAREVANAREEGVQFLFNRQPLALLGDDGEVTGVRVAETRLGEPDALGRRNAELVPGSESVLAADVVIIAFGFQPDPPQWLSAHGIELESNGRIRVTQPPSGCGSRRAATAALPFQTTNTRVFAGGDGVRGADLVVTAAYEGREAAAGIVRMLLG
>NZ_CP046603.1|WP_115844739.1|121874_122084_+|YdcH-family-protein
MTESDDPAVLAHQLAELRLEHRDLDAAIERLSRLPDADELTVKRLKKRKLWLKDCIARLESALIPDEPA
>NZ_CP046603.1|WP_157028864.1|120909_121809_-|tRNA-2-thiocytidine(32)-synthetase-TtcA
MSTVLPLLEPQPLAHRAQRRAHENNKLAKRLRHQVGRAIADFGMIEDGDKVMVCLSGGKDSYTMLDILLQLQQKAPVKFELVAVNLDQKQPDFPEHVLPEYLKSIGVPYHIIEQDTYSVVTRVVPEGKTMCSLCSRLRRGALYTYAEENGFTKIALGHHRDDLVATFFLNLFFHAKLAGMPPKLLSDDGKHVVIRPLAYVREDDIAAYADAKGFPIIPCNLCGSQENLQRKQVKKMMDAWERDTPGRIETIARALGDIRPSQLGDPKLFDFLALGRSGDAPMPDAHAWLAGEPHAQDAP
>NZ_CP046603.1|WP_115844743.1|119878_120784_-|recombination-associated-protein-RdgC
MFFRNLTLFRFPTTTKFDDLDSGLTECQLRAVGPLELSSRGFISPFGRDSDEMSHKRSDATWLAVGGEDKILPGSVVNDMLNKKLSEIEAKEGRKPGGKTRKRIKDELITDLLPRAFVKPSRTDALIDTGLGVVAVDTSSRKSGENVVSEIRRALGSFPALPLNAEVAPRSVLTGWVAGEPLPEGLSLGDECELRDPIDQGAVVKVQRMELQSDEITKHLESGKQVTRLALTLDDHVSFVLGEDLVVRKFKLLDGAVDELESTERDDLRAELDARFVLMAGEFRRLFTVLEGALKLSKAEA
>NZ_CP046603.1|WP_157028863.1|118965_119769_-|DUF45-domain-containing-protein
MPSPPRPLARLFAPTPRTVERETLDIELSDGRTVPLQRVRDPRARRMKLSVDERGARLTIPMRASLATADRFVTQHRDWLAAQLERFAVDGVPSLEPGVDVQLPLRGALHDVRWQAGRFTRLDHANDGTGDLVFTHPARAGDTAVRRAVRDFLEAQGRADVGRWMPRYLPALPRAPRRVTFKIMSSQWGSLAPDGSMALDLSLVLARPGAFEYVLVHELCHLIHADHSRSFWREVEARCPQWREERDYFHAEGRRLKATLRALCGKV
>NZ_CP046603.1|WP_157028862.1|118085_118958_+|alpha/beta-fold-hydrolase
MPARGLHNFTLDTPTGRIAGLRSEPGGARVIALHGWLDNAASFVPLAEHLHGIELVAPDLPGHGASAHLAPGADYSFAAAVNAVLDVADALGWERFSLLGHSMGAGISSLVAAACPQRVERLVAIEALGALAEVPERTVSRLREAIAAYRALRGKSLRVFPDIAIAIRARMAAGANVGSRLEERAARLLVERGVVPVEGGFTWSSDPRLTLPTMQRMTEPQIRDLVAGIECPTRVIFADPAQPYLPDALRRERAALLPAGELIVIDGGHHLHMEQPGRIAEVIGDFFVRG
>NZ_CP046603.1|WP_157028861.1|117048_118071_+|ferrochelatase
MPASASTDAALDGAPTSPSSAPPDTALVLVNLGTPDAPTPAGVRRYLAEFLGDRRVVGLPRWFWLPLLHLVVLPLRSKPVAKKYASIWMGGEDGGSPLAVYTRRLAWAVQNELPQLRVIDAMRYGSPSLAARLRQLREAGVRRALVLPLYPQYSTTTTASVDDVLAREHALPTRLVENYHLDDGWLDAVADSIRAHRAQHAAGEHLLFSFHGLPQRLIDEGDPYQRHCEAGARAIAKRLELADDQWSLSYQSRFGRDKWLEPSTQQTLHALAARGVRNVDVVAPGFAVDCIETLEEVAMMLAEDFAEHGGTLRYIPCLNDSLPHARALAGIARQELHNWI
>NZ_CP046603.1|WP_157028860.1|115877_116795_-|ligand-binding-protein-SH3
MSRLPRPALLRIAVLSLALGIATSAVAGQQEDDRARQAVRVLTDIQQIPESGIPDKLLDEARGIVVVPDALKVGLVVGGRRGHGLLSVKNPDGTWSNPSFVKLTGGSIGFQAGVQSADIVLVFRSDRGLDNIVNGKVTLGADAGVAAGPVGRNAGTATDGQLKAEIWSWSRARGLFAGIALDGAVLSIDDEANESVYGRDTTPRMIFEGRANGQPSTAVVDFRDRLEEASNIARTARSNASADANARASAPRPAAGSAAVHSSGAVSAAPATGSATTAPLHAPQQAQQPSAFETVESPVQAEPLP
>NZ_CP046603.1|WP_115844751.1|115529_115769_-|Sec-independent-protein-translocase-subunit-TatA
MGGLSLWHWLIVLVIVVLVFGTKRLGNVGKDLGEAVKGFKKGMRDGDEDADKPSAQLRDERRDETKSGESTKHDDRTPR
>NZ_CP046603.1|WP_157028866.1|128712_129981_+|MFS-transporter
MTDTAPATGARRRAALVFIFITILIDVLSFGLIIPVLPHLIEQFAGGDTAHAAYWVAAFGFLFAGIQFVTSPVQGALSDRFGRRPVILLSCLGLGLDFVFMALAPSLAWLLVGRIISGITSASFTTANAYVADVTPPEKRAKSYGLLGAAFGVGFIVGPLIGGALGEVDLRLPFWFAAGLALLNFCYGLFVLPESLPPERRSPRFDWSHANPIGSLGLLKRYPQVFGLAAVVFIANLAHYVYPSVFVLFADYQYQWGPREVSYVLAIVGVLNVIVQAGLVGKAVHALGERRALMLGLACGAIGFGIYGFAHMGWMFLVGLPISAIWGLAAPSTQALITRQVGPEVQGRIQGALMSLVSLAGIIGPVVFAGSFGYFIDDRAPVHLPGAPFLIAGILLAVAVGIAWRYARVPAAAPAASVVEPG
>NZ_CP046603.1|WP_115844733.1|130332_130566_+|hypothetical-protein
MPKCDTCGNDYDKAFTVTMPHGSGTFDSFECAIHKLAPTCEHCGCRIIGHGVEHDGKFWCCASCAKHSGITGIDDRI
>NZ_CP046603.1|WP_157028867.1|130587_131046_-|hypothetical-protein
MGIEGDAMSAVDLRTILADPEHGGAYFIDDRDGEAMAQTAAGLDFAVMRVDLSDCVDKADLMARLAKAGGFPAGFGANWDALSDVLRDMSWRTAPGYVWLIEHAGAWRETYPEDFDTFLEILNEAAFEWAHEDVAFWALLPFPGDQLTALED
>NZ_CP046603.1|WP_157028868.1|131021_131450_-|ribonuclease
MRRSHSIWLVALIALVALWAWTRRAGDGELRPVDAPPITAQRAAQVGYPAFLPVEAHAVLERIASGAAHPYRQDGSVFQNREGRLPQQPRGYYREYTVPTPGADTRGARRIIAGGDPPAEYWYTADHYQSFRRFEWASKETR
>NZ_CP046603.1|WP_115844727.1|131472_131775_-|hypothetical-protein
MTRIILCLTVLAAASLAGCASTTPVAGGPTAPTGKCNAEGARWAIGSAVNDDVVNRILQGTGSRDARVLRPGQMATMDFREDRVNVDVNDRGAITGIRCG
>NZ_CP046603.1|WP_157028869.1|132046_132538_-|GNAT-family-N-acetyltransferase
MSQLRIRAAHVHDRDLLAQWAVAMALETEHKQLDEKTVRAGVEAGIADPAKARYFVAMHESAVAGRETIAAPAGTLMLTREWSDWRNGDWWWIQSVYVPPQFRRMGVFTALYRHVEQLARDTPGVVGLRLYVERENTNAQKTYEALGMRDAGYSILEAEFPRQ
>NZ_CP046603.1|WP_157028870.1|132574_133168_-|superoxide-dismutase-family-protein
MKTALTPVLLAASVLALSACSSSAPTKSTAPAASAPTPAAPAAQSTAKSATVNLASASGSLVSGKLTVVPMGNGVHLTGEVGGLSPGSTHAIHIHEKGDCSAADASSAGGHFNPAAQPHGKVGSGAHHGGDMDNLVANAEGVAQVNAHAEGVTLGGGAANDVAGKAVIVHAAADDYRTQPTGNAGGRVACGVITVTR
>NZ_CP046603.1|WP_157028871.1|133312_134746_-|nitrogen-regulation-protein-NR(I)
MKPHDTSDARVWVVDDDRSVRFVLATALREAGYRVDGFENARDALDALAERGAPDLLFTDVRMPGDDGLVLLDKLKAQAPKLPVIVMSAYTDVASTAGAFRGGAHEFLSKPFDLDEAVELAARTLATREAAEPPQRDTAATQDDALIGEAPAMRTLFRAIGRLAQAPLSVLITGETGTGKELVARALHRESPRAQAPFVALNTAAIPAELLESELFGHEAGAFTGAQRRHVGRFEQAHGGTLFLDEIGDMPLPLQTRLLRVLAEGEFFRVGGRELIRVDVRVIAATHQDLEALVEAGRFRADLLHRLDVVRLRLPALRERREDVPRLAERFLRAAATRFDAPAKRLAPAAVERLVAYDWPGNVRQLENLCWRLAALAPGDTITREDLDEALAATPGKDDAQAAGDDDWDRRLAAWARAQLELGRDDIHAQARERFERALFDAALEHTGGRRTEAAARLGLGRNTLTRKLGPGRRRPS
>NZ_CP046603.1|WP_157028872.1|134745_135798_-|PAS-domain-containing-sensor-histidine-kinase
MPTPPDTLRPELDTLTTPVAWSDEEGAIVGCNAAFSRWLGVGARRLIGWPLAGLEGGEGRLADAMGRLDAADAPLRVRRSRLRYADGEECFADVWLSRRDDGGWLLEAHPVDEFPGDDPALLLPSALSASLKGLAHELRNPLAGLKGAAQLLSRRLDAETQGDSRELVAMIGSEVERLTALVDRLLTPAPPRPHAPLNIHAVLERVLRLAESDAGWAVRLVRDYDPSLPEFAGDSDRLMQAVWNLVRNAIEAGAANVTLRTRAEHAVRIADAVHPIALRLEIVDDGRGVPDELTERLFLPLVSGRAEGSGLGLALAQQVAREHRGSLAYRSRPGHTVFTLLLPMHVEDAP
>NZ_CP046603.1|WP_157028873.1|135932_138113_+|beta-glucosidase
MSSARVEALLAAMTLEEKVGQLGVFADMVRPFNPDVNPETNVRNADQVLDEIRAGAVGSLFNGYGVEAGRRLQKVAVEESRLGIPVILAADVIHGMKTVFPIPLGEAASFEPDLAQRTARATAIEATASGVHWTYAPSVDIARDQRWGRGAESAGEDTFLSCAFAAARVRGFQGDDLRSPDALLATPKHFAAYGAVAAGMEYATVDISPQTLRDVHLPPFKAAIDAGALAIMSSFNDINGVPASANAWLLTDLLRGEWKFRGVVVSDYTSDMELIAHGYAEDERDATRRSILAGLDLSMQSGFFANHLPALVESGEVPIERVDEAVRRMLTLKETIGLLDDPYRSLDPAREADRSWIDAHDALAREAARRSIVLAKNDGDVLPLRSAGQRIALIGPFASDRDNIEGCWTLFGDKSRYVSWEDGFRAAMDDAALLDVVAGCAPEGPLDGGIEAAVEAAARADVVVLALGEPQNYSGEAQSRVQITIPPAQQALADAVTAVGKPVVVLLRNGRALALEGAVRDADAVLVTWFLGTQSGHAVADVVFGHYGPSARLPVSFPLASGQQPYFYNHTRTGRPETPDMSEFKARWREIPNEPLYPFGHGLTYSRFEYGDVELSTSELAWGDTLEVRATLTNTGTRAAEEVAQLYIHDRVASRVRPVRELRGFAKVRLEPGERTTVRFTLDLEALAFSGADGVRRAEPGTFDVWIAPNCKAGKPASFRLGTARG

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Crispr_ID: NZ_CP046603_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046603_2

910748-910853

Orphan

I-E

Consensus_repeat	Method
TTGAAGCTGTCATTCCCGCGAAGGCGGGAATCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046603_2

>merge|NZ_CP046603|2|910748-910853|CRISPRCasFinder
TTGAAGCTGTCATTCCCGCGAAGGCGGGAATCCAGGTTTCCGGCGCGTCACGCCGGATGGGGCCAGCTTGTCTTGAAGCCGTCATTCCCGCGAAGGCGGGAATCCA

>NZ_CP046603|2|2|910748-910853|CRISPRCasFinder
TTGAAGCTGTCATTCCCGCGAAGGCGGGAATCCA	GGTTTCCGGCGCGTCACGCCGGATGGGGCCAGCTTGTC
TTGAAGCCGTCATTCCCGCGAAGGCGGGAATCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046603.1\|WP_157029436.1\|906325_906973_-\|DUF480-domain-containing-protein	unknown	unknown	gnl\|CDD\|377312
NZ_CP046603.1\|WP_157029444.1\|916639_917167_+\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|234587
NZ_CP046603.1\|WP_157029443.1\|915880_916609_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|234640
NZ_CP046603.1\|WP_115841464.1\|906983_908669_-\|Kef-family-K(+)-transporter	unknown	unknown	gnl\|CDD\|182633
NZ_CP046603.1\|WP_157029439.1\|912137_912443_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|274226
NZ_CP046603.1\|WP_157031598.1\|905027_905576_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP046603.1\|WP_157031599.1\|905572_906322_+\|adenosylcobinamide-GDP-ribazoletransferase	unknown	unknown	gnl\|CDD\|234697
NZ_CP046603.1\|WP_157029438.1\|911028_911925_-\|PhzF-family-phenazine-biosynthesis-isomerase	unknown	unknown	gnl\|CDD\|182354
NZ_CP046603.1\|WP_157029441.1\|914630_915140_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP046603.1\|WP_157029445.1\|917336_917927_+\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
NZ_CP046603.1\|WP_115843765.1\|914352_914628_+\|DNA-primase	unknown	unknown	gnl\|CDD\|368953
NZ_CP046603.1\|WP_157029432.1\|901008_902004_+\|threonine-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|180188
NZ_CP046603.1\|WP_157029437.1\|908870_910715_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236729
NZ_CP046603.1\|WP_157029442.1\|915192_915843_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP046603.1\|WP_157029446.1\|917979_919908_+\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|225700
NZ_CP046603.1\|WP_157029440.1\|912549_914349_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_CP046603.1\|WP_157029431.1\|900098_901016_+\|cobalamin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|234919
NZ_CP046603.1\|WP_157029433.1\|902000_903473_+\|cobyric-acid-synthase	unknown	unknown	gnl\|CDD\|234838
NZ_CP046603.1\|WP_157029434.1\|903460_903982_+\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	unknown	unknown	gnl\|CDD\|235612
NZ_CP046603.1\|WP_157029435.1\|903978_905025_+\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234636

Protein	Function_ID	Function_description	E-value
NZ_CP046603.1\|WP_157029436.1\|906325_906973_-\|DUF480-domain-containing-protein	gnl\|CDD\|377312	pfam04337, DUF480, Protein of unknown function, DUF480. This family consists of several proteins of uncharacterized function.	1.6775e-67
NZ_CP046603.1\|WP_157029444.1\|916639_917167_+\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|234587	PRK00039, ruvC, Holliday junction resolvase; Reviewed.	5.62655e-73
NZ_CP046603.1\|WP_157029443.1\|915880_916609_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|234640	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator.	4.3786e-131
NZ_CP046603.1\|WP_115841464.1\|906983_908669_-\|Kef-family-K(+)-transporter	gnl\|CDD\|182633	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional.	0
NZ_CP046603.1\|WP_157029439.1\|912137_912443_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|274226	TIGR02605, CxxC_CxxC_SSSS, putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (SP:Q50229, ). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors. [Regulatory functions, DNA interactions].	1.27675e-21
NZ_CP046603.1\|WP_157031598.1\|905027_905576_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.50006e-43
NZ_CP046603.1\|WP_157031599.1\|905572_906322_+\|adenosylcobinamide-GDP-ribazoletransferase	gnl\|CDD\|234697	PRK00235, cobS, cobalamin synthase; Reviewed.	6.1564e-58
NZ_CP046603.1\|WP_157029438.1\|911028_911925_-\|PhzF-family-phenazine-biosynthesis-isomerase	gnl\|CDD\|182354	PRK10281, PRK10281, PhzF family isomerase.	4.56889e-124
NZ_CP046603.1\|WP_157029441.1\|914630_915140_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.45446e-14
NZ_CP046603.1\|WP_157029445.1\|917336_917927_+\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	2.48561e-87
NZ_CP046603.1\|WP_115843765.1\|914352_914628_+\|DNA-primase	gnl\|CDD\|368953	pfam06524, NOA36, NOA36 protein. This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.	6.83891e-07
NZ_CP046603.1\|WP_157029432.1\|901008_902004_+\|threonine-phosphate-decarboxylase	gnl\|CDD\|180188	PRK05664, PRK05664, threonine-phosphate decarboxylase; Reviewed.	4.88781e-169
NZ_CP046603.1\|WP_157029437.1\|908870_910715_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236729	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional.	0
NZ_CP046603.1\|WP_157029442.1\|915192_915843_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	0.000171405
NZ_CP046603.1\|WP_157029446.1\|917979_919908_+\|potassium-transporter-Kup	gnl\|CDD\|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0
NZ_CP046603.1\|WP_157029440.1\|912549_914349_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP046603.1\|WP_157029431.1\|900098_901016_+\|cobalamin-biosynthesis-protein	gnl\|CDD\|234919	PRK01209, cobD, cobalamin biosynthesis protein.	5.76896e-123
NZ_CP046603.1\|WP_157029433.1\|902000_903473_+\|cobyric-acid-synthase	gnl\|CDD\|234838	PRK00784, PRK00784, cobyric acid synthase.	0
NZ_CP046603.1\|WP_157029434.1\|903460_903982_+\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	gnl\|CDD\|235612	PRK05800, cobU, adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated.	2.16175e-94
NZ_CP046603.1\|WP_157029435.1\|903978_905025_+\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	gnl\|CDD\|234636	PRK00105, cobT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed.	1.10215e-157

>NZ_CP046603.1|WP_157029437.1|908870_910715_+|ATP-binding-cassette-domain-containing-protein
MISFRNFALRRGERLLLSNVDLSLHAGWRVGVIGRNGTGKSSLFAALQGEVEADQGDIDIPARVRIASVAQETPALDDPALDFVLSGDAAVYAAIAMERDAMAREDWEAVAEAHHKLEELGGYDATARAGKLLHGLGFTPDTHERAVKEFSGGWRVRLNLARALMTPSDLLLLDEPTNHLDLDAVLWLEQWLLKYPGTLLLISHDREFLDEVTTHTLHLHDGKGKLYTGDYTAFERQRAEHLRLQQITHEKVQAERAHLQSFIDRFSASAAKAKQAQSRVKRLAKMQNTEAVRVERALRIEFPAPAKLPHALLRISDADCGYGNHVVLDNIRFVLEAGDRVALLGPNGAGKSTLVKSLVGEIPLLSGERGGHPDLRIGYFAQHTVESLKEGTSPIDHLGEIAPGVATQQLRDFLGKWNFPGDRAFESVDGFSGGERARLALALIAWRKPNVLLLDEPTNHLDLDMREALAEALASFDGAIVMVSHDRHLIGLVCETFWRVADGVAQPFDGDLDAYAVWLRTRDSAAEKPKAPVAAAPAPKTASKGPKVNAHKLAQAEARVAELESKLHTLDLDLADPDKYTGGGTDAAALSKQRDQVAAELAKAEEALLGLYDA
>NZ_CP046603.1|WP_115841464.1|906983_908669_-|Kef-family-K(+)-transporter
MHHTSLIAILVAGFVLAFVFGAMAQKLRLSPLVGYLLAGVVAGPFTPGFVGDQTLAPQLAEIGVILLMFGVGLHFSLRDLLDVKAIALPGALAQIALATALGWGMALLLGWSHGAGLVFGLSLSVASTVVLLRALEERRLVETGRGRIAVGWLIVEDLAMVLALVLLPALAGLLKGGDTSAVAVWEALFKTLAKVGGFVAVMLIVGRRVIPWILERVAGTGSRELFTLCVLAIALGVAFGSAGLFGVSFALGAFFAGMVLNESEFSHQAANETLPLRDAFAVLFFVSVGMLFDPMILIERPLQVLATFLIIVVGKSIAAYAIVRAFGKPRNTALLISTSLAQIGEFSFILAGLGLQLEVLPKEGQDLILAGALLSIIVNPILFAWLDRREAREEALREDVVEEHMYPPIAPDLRDHVIQIGYGRVGSELGRLLTERGVGLVVIDGEEDLVARARAAGIPAIRGNAANERVLREAAPERANTVMVAIPNALEAGEIIARLREINPALTIVARAHSDAEVKHLLQHGADGAVMAERELAHSLAEMVMATPHYRGSRHLPPATA
>NZ_CP046603.1|WP_157029436.1|906325_906973_-|DUF480-domain-containing-protein
MTEEAAPQLSPIDARILASLFEKEATTPDAYPLTLNAIVLACNQKTAREPVMELEPGEVGNALRRLETRGWVKSQHTARAERYSHRLEAVLSLTRPQTALLVLLMLRGPQTAYELMSRTDRLARFENIEDVQHALERLSRRSPALVVALPRQLGQRGERFAHLLSSEPDPGVMSSAPSGAGASSSPMSERVTELEQRVAELEARLSALESARDAG
>NZ_CP046603.1|WP_157031599.1|905572_906322_+|adenosylcobinamide-GDP-ribazoletransferase
MMRGLLVAIGFLTRIPVPARVFDDALARSQSLAWYPLVGVLIGTLLCALVWALPTAKPLLVAAIVLLAWVAITGALHLDGLADSADAWIGGMGGTWDQRRARTLEIMKDPRCGPAGVTALVLVLLMKFAALASLPADAWTWLWLAPLLARMAATIAFVTTPYVRSGGLGSGLTNAPRAGCAVALLLGAAACASAGMRGALALALATIVFLLWRRACVRRLGGITGDTTGGLVEMIEAVVLLGIALMPDV
>NZ_CP046603.1|WP_157031598.1|905027_905576_+|histidine-phosphatase-family-protein
MPGNIELLRHGDTGQRSYRGQLDDALIELGWSQLREAVIGREWTHIVSSTLQRCARFARELANARGLPLHLDARLAEYHFGQWQGVPIETLAQEQGDALGRFWADPVANPPPGGETFAQFRARLAAAMDDIAEMAAHGRVLVITHGGAIRLLRCVAERRDFGDMAGIDVPHASLHPIAWPPA
>NZ_CP046603.1|WP_157029435.1|903978_905025_+|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase
MNDAWWSRPCAVADADAACAALARQGRLTKPPGSLGKLEEIAVWWAARQGTERPGVERVWISVFAADHGVAAEGVSAFPQAVTGEMLRNFATGGAAIAVLARHLGARLDVVNLGTVNDPGELPDVHRAVVAPSTANFCEAPAMTREQLREAMQVGADRVALALDHDADLFVGGEMGIGNTTAATALSCALLGNAPEALAGSGTGLDDAGIARKCGVVRRALARHADADGAVDYLQRLGGFEIAALTGAYIAAAQARLPVLVDGFITTAAALAAVRLNEGVREWLCFSHRSHERGHQRLLDALHAQPLLDLDMRLGEASGAAVAVPLLRMACALHREMATFEQAGVSRA
>NZ_CP046603.1|WP_157029434.1|903460_903982_+|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase
MRSLILGGARSGKSALAERIATESGREVVYIATAQGGDGEMRERIAHHRSQRPSHWRCVEEPVALATTLREHADDGRCVLVDCLTLWLTNLLADPDDARFEHERVALLDVLPDLRGDIVLVSNEVGLGVVPMGALTRRFVDEAGRLHQALARRCDRVLFVAAGLPLALKGTYE
>NZ_CP046603.1|WP_157029433.1|902000_903473_+|cobyric-acid-synthase
MSARVLMVQGCTSDAGKSTLVAALCRWLRRRGVAVAPFKPQNMALNSAVTEDGGEIGRAQAVQAQACGLAPHTDFNPVLLKPSSDTGAQVIVHGRAVAQLDARAYHDYKRIARDAVLASHARLCERFEAVIVEGAGSPAEINLRANDIANMGYAEAVDCPVILVADIDRGGVFAHLVGTLALLGPSERARVRGFVINRFRGDIALLQPGLEWLERETGKPVLGVLPYLQGLHLEAEDALPESSDNRGASLRVVVPVLPRISNHTDLDALRAHPQAEVVLVGPNETPPPCDLIVLPGSKATRADLAWLRANGWEEAISRHLRYGGKLLGICGGLQMLGRAVHDPLGIEGEAGTSAGFALLELETTLEAVKQLRNVTGHLLLDDAPLRGYEIHCGTSVGAALSSPSSRLDEGRVDGAMSDDRQIIGTYVHGIFDHPDALAALLRWAGLRDAQRIDIHALREASIERIADAVDAHLDCDALLRILDREDACEA
>NZ_CP046603.1|WP_157029432.1|901008_902004_+|threonine-phosphate-decarboxylase
MLEHGGRLLRAARTYGIAPEHWLDVSTGISPFAWPAPPIPAAAWHRLPEEDDGLQAVASDYYGARALLPVAGSQAAIQALPRLRARSRVGVIAPGYAEHAHAWRAAGHDVECLPAATLLAEHVRFDVIVLIHPNNPAGERFERTQLLALHSTLARRGGWLVVDEAFMDATPQDSLCDVSDRDGLIVLRSVGKFFGLAGARAGFVCAAPSMLAALNEVLGPWTIPGPSRHVLRAALADTAWHAMQRERLSVYGAQLRTTLESTGFLPDAGCAFFQWKRDPRAAALHDALARRGILTRLFDTPSSLRFGLPPDDAGFRRLDEGLRSALQEIGP
>NZ_CP046603.1|WP_157029431.1|900098_901016_+|cobalamin-biosynthesis-protein
MSTAFAMLAAVVLDALLGEPRRAHPLVMFGRVASLIERRLHADSRVVGALAWWLAVAPPVLAVAWLTHALASWMSWIIAACVLYLAIGHRSLAEHARAVESALREGDLDTARTAVARMVSRDTDALDASQVAAAATESVLENGSDAVFGAFFWFALLGAPGAVLYRLANTLDAMWGYRTPRFERFGWASARIDDVLNFVPARFTALTYALLGDRASAWRSWRAQAPSWDSPNAGPVMAAGAGALRVRLGGAAPYHGRWEERPALGEGAAPDANSIAAALRLVRRGVWLWLALIVAASVLVGGFDA
>NZ_CP046603.1|WP_157029438.1|911028_911925_-|PhzF-family-phenazine-biosynthesis-isomerase
MAPLRIYRIDAFTTARGEGNPAGVVTNARGLGDAQMQAIAAELGHSETAFVLPAQGDDHDLHVRFFSPTTEVPVCGHATVGAHFALALEGGTRGVRRQLTGAGVQQVETREDADGIAVRIHQNPPTFDEPLSDALVRELADALGLAFDELDPRGPVQFVSTGHGKLMVPIRSRERLRTLRPDMTRLAALDERTGTRGYFVFTLDVAPDDDALTHGRMFAPGIGIEEDPVTGNANGPMGAWLVKHGLLPARDGEARFRARQRNGAGRGGFMDVAVTVRDGKPVAVAIEGRAVLGEMIER
>NZ_CP046603.1|WP_157029439.1|912137_912443_+|zinc-ribbon-domain-containing-protein
MPIYAFECAACGHSFDRLQKMSDADPVDCPSCGAPQVRRQLTAPQFRLAGGGWYETDFKKDGDKKRNLAGDAGSAPKSESKPAESKPAEKKADTPASKPST
>NZ_CP046603.1|WP_157029440.1|912549_914349_+|aspartate--tRNA-ligase
MRTHFCGLVDEALIGQTVTLCGWADVARNLGGLCFIDLRDHEGIVQIVAEPTTDAALGAGEANAAVIATAANVGYEDCLRVTGVVRKRESVNAKIRTGQVEVVATKIEVLNKAEPLPFHAHENPGEDIRLKYRYLDMRRPEMQKMMRTRIKLVQALRRYLDERGFQDIETPILTKATPEGARDFLVPARMHPGEFYALPQSPQLFKQILMMAGFDRYYQIARCFRDEALRADRQLEFTQLDMEFAWVSERDVQDTVEEMIRVVFRDVMGVELAAEFPRMTYAEAMRRYGSDKPDLRIALEFTDIAELVKSCEFKVFTDWANHEDGRVVALRVPGASTLSRKQIDDYAAYAGKFGAKGLAWMKVEDASKGREGINSPIAKFLDDATLAAIVQATGATTGDAIFFGAATYKSASDFMGALRLKVAKDLGLVAEGWAPLWVTDFPMFEWDDEENRYVALHHPFTAPAVDSIDDLRANAKTAVSRGYDMVLNGNEIGGGSIRIHNSQMQSAVFDLLGIGAEEAEGKFGFLLDALKFGAPPHGGIAFGIDRIAALMAGTESIRDVIAFPKTTTAQCLMTGAPSPVPDKQLAEVHIQIREKQEGK
>NZ_CP046603.1|WP_115843765.1|914352_914628_+|DNA-primase
MSEVPFDLEWEALGEAGSAAGAGLVTERAQVFGGWLVRTRVAGVVSLAFVPDDQFRWDGEDFGDEYEEEDEDAEEDEEDEESDEDEEEDDQ
>NZ_CP046603.1|WP_157029441.1|914630_915140_+|GNAT-family-N-acetyltransferase
MELRRATVSDAQALSALSSTCFTQTFGHLYPPQDLSHFLDEAYAPAAWASLLSDTAYATWLLERDGVAIGYATAGACSLPHADVAPGDGELKRLYVLQEHQGGGRGSRLFDAALAWLLRDGPRTLWIGMWSENHGAQRFYARHGFERVGDYDFVVGNTRDHEFILRRGA
>NZ_CP046603.1|WP_157029442.1|915192_915843_+|alpha/beta-fold-hydrolase
MTDHAEPRRVLLIHGLWMPRLSMHWLARRLREAGFATELFGYPTIAGGPEAALPMLAQRLRKRPAHVLAHSLGGLVTLTALESEPDLPVRRVVCLGSPLRGSAAAQTLAGQAWSKPYLGRSARLLRSGCQPWRGQAAVGMVAGRTPLGLGRYFGRFDGDNDGTVAVEETRLEGLADHVVIPTSHTGLLFSPDALQLAVGFFRDGRFPARGSDGGIE
>NZ_CP046603.1|WP_157029443.1|915880_916609_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGRGPSIEARKNAVDAQRGKIFTKVIREIGVAARSGGGDPGGNPRLRAAIDKGLSVNMSKDVIERAIKKATGELEGVVYEEIRYEGYAPGGVAVIVDCLTDNKVRTVADVRHAFGKFGGNLGTDGSVSFMFKKLGVLSFAAGANEEKITELAIDAGADDVVVYDDGAIDVVTAPDAFAGVKSAMEAAGLTADFAEVTMRADNDIAVAGETAQQVVKLLRWLEDMDDVQNVYSNADLDEGAYA
>NZ_CP046603.1|WP_157029444.1|916639_917167_+|crossover-junction-endodeoxyribonuclease-RuvC
MTRILGIDPGSQRTGVGVIDVAPDGRCTYVHAQALVLLEAEDFPSRLGLLCDGLEALLDEWQPQQIAIETVFMAKSATSALKLGHARGAALATVVRRRLPVNEYAPRVIKQSLVGRGAADKEQVQHMVRLLLNLPGMKLQADAADALAIALTHAHMSATAARTGVATHLLRRRGA
>NZ_CP046603.1|WP_157029445.1|917336_917927_+|Holliday-junction-branch-migration-protein-RuvA
MIGRLKGTLVMKQPPWLVVDVNGVGYELEAPMSTFYDLPDLGREVSLFTHYAQKEDSVSLYGFLREGERRLFRDVQKVSGIGAKIALAVLSGVSVDEFARLVQAGDITALTRIPGIGKKTAERMVVELRDRAADLAGVGATLNVPGAAGDAQSEAVIALQQLGYKPAEAVRMAREATEAGDDAAAIIRKALKSALR
>NZ_CP046603.1|WP_157029446.1|917979_919908_+|potassium-transporter-Kup
MSLPASDSRSHGHDHGQGKGLAGLIVGAIGVVFGDIGTSPLYTLKEAFSPHFAERLGMVVNEATVLGMLSLVFWALMIVVTAKYVTIIMRADNQGEGGIMALMALAQRTLPKGSRSAYVVGILGIFGASLFFGDSVITPAITVLGAVEGLEIAAPGLHRFIVPLSVVILVLVFLAQRFGTEKVGRVFGPVMLVWFLSLAAIGIYNIAKAPAVVAALNPMWGMRFFMEHGTLSVMILGVVVLAVTGGEALYADMGHFGARPIRHGWYFMVLPCLTLNYLGQGAFVLAHPEAVKNPFFEAVPPWALYPMIILATMAAVIASQAVITGAYSVARQAMQLGFLPRMQIKHTSRETIGQIYVPGINWLLMIAVLAVVLAFRSSTALATAYGISVSATMLIDTLLLALVARALWPRWRTWVLPLCLVFFVVDVGFVFANGAKFFDGAWFPLLLGVVVFTLLRTWRRGRELLHDEVRKEGIGLDTFLPGLMLAPPVRVPGTAIFMTADKGVVPHALLHNLKHNKVLHERNVFLTVETLNIPYAPKEKRLKIESIAGEDFYRVLIRFGFMEVPDVPLALMRSCDAGGTYFDPMDTTYFASRETVVASRHRGMPIWRDRLFAFMHRNAAPATGFFRIPGNRLVELGAQVEI

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Crispr_ID: NZ_CP046603_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046603_3

1482877-1482972

Orphan

Consensus_repeat	Method
TTCCCGCGTAGGCGGGAATCCATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046603_3

>merge|NZ_CP046603|3|1482877-1482972|CRISPRCasFinder
TTCCCGCGTAGGCGGGAATCCATCTGCGCGACGTATCAAGCCTCCCGAATAGCCGCCACCTTGAGCTGTTATTCCCGCGAAGGCGGGAATCCATCT

>NZ_CP046603|3|3|1482877-1482972|CRISPRCasFinder
TTCCCGCGTAGGCGGGAATCCATCT	GCGCGACGTATCAAGCCTCCCGAATAGCCGCCACCTTGAGCTGTTA
TTCCCGCGAAGGCGGGAATCCATCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046603.1\|WP_157029792.1\|1475892_1477107_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340836
NZ_CP046603.1\|WP_115840730.1\|1487494_1488892_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224787
NZ_CP046603.1\|WP_157029803.1\|1491296_1491797_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_115841024.1\|1479243_1480800_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274386
NZ_CP046603.1\|WP_157029802.1\|1490306_1491278_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NZ_CP046603.1\|WP_115840728.1\|1489587_1490148_-\|glycine-cleavage-system-protein-R	unknown	unknown	gnl\|CDD\|225337
NZ_CP046603.1\|WP_157029790.1\|1473376_1474888_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377422
NZ_CP046603.1\|WP_115840725.1\|1491893_1492217_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|378771
NZ_CP046603.1\|WP_157029796.1\|1481758_1482844_+\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|187558
NZ_CP046603.1\|WP_157029791.1\|1474715_1475885_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340836
NZ_CP046603.1\|WP_157029798.1\|1485012_1485867_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|227099
NZ_CP046603.1\|WP_157029795.1\|1480847_1481477_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|132072
NZ_CP046603.1\|WP_115840741.1\|1472342_1473380_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213023
NZ_CP046603.1\|WP_157029794.1\|1478479_1479247_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|274392
NZ_CP046603.1\|WP_157029801.1\|1489070_1489556_-\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|224146
NZ_CP046603.1\|WP_157029797.1\|1483065_1484859_-\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|366356
NZ_CP046603.1\|WP_157029800.1\|1486677_1487358_-\|DUF1275-domain-containing-protein	unknown	unknown	gnl\|CDD\|377734
NZ_CP046603.1\|WP_157029793.1\|1477063_1478428_-\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|274391
NZ_CP046603.1\|WP_157029799.1\|1485859_1486681_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
NZ_CP046603.1\|WP_157029789.1\|1471553_1472318_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213023

Protein	Function_ID	Function_description	E-value
NZ_CP046603.1\|WP_157029792.1\|1475892_1477107_-\|glycosyltransferase	gnl\|CDD\|340836	cd03807, GT4_WbnK-like, Shigella dysenteriae WbnK and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.	4.69034e-75
NZ_CP046603.1\|WP_115840730.1\|1487494_1488892_-\|PhoH-family-protein	gnl\|CDD\|224787	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only].	0
NZ_CP046603.1\|WP_115841024.1\|1479243_1480800_-\|hypothetical-protein	gnl\|CDD\|274386	TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	1.36853e-93
NZ_CP046603.1\|WP_157029802.1\|1490306_1491278_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	3.3963e-133
NZ_CP046603.1\|WP_115840728.1\|1489587_1490148_-\|glycine-cleavage-system-protein-R	gnl\|CDD\|225337	COG2716, GcvR, Glycine cleavage system regulatory protein [Amino acid transport and metabolism].	7.51608e-73
NZ_CP046603.1\|WP_157029790.1\|1473376_1474888_-\|hypothetical-protein	gnl\|CDD\|377422	pfam04932, Wzy_C, O-Antigen ligase. This group of bacterial proteins is involved in the synthesis of O-antigen, a lipopolysaccharide found in the outer membrane in gram-negative bacteria. This family includes O-antigen ligases such as E. coli RfaL.	2.39936e-14
NZ_CP046603.1\|WP_115840725.1\|1491893_1492217_-\|ferredoxin-family-protein	gnl\|CDD\|378771	pfam11953, DUF3470, Domain of unknown function (DUF3470). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 50 amino acids in length. This domain is found associated with pfam00037. This domain has a single completely conserved residue N that may be functionally important.	1.25975e-20
NZ_CP046603.1\|WP_157029796.1\|1481758_1482844_+\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|187558	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NZ_CP046603.1\|WP_157029791.1\|1474715_1475885_-\|glycosyltransferase	gnl\|CDD\|340836	cd03807, GT4_WbnK-like, Shigella dysenteriae WbnK and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.	6.64335e-59
NZ_CP046603.1\|WP_157029798.1\|1485012_1485867_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|227099	COG4757, COG4757, Predicted alpha/beta hydrolase [General function prediction only].	8.73006e-18
NZ_CP046603.1\|WP_157029795.1\|1480847_1481477_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|132072	TIGR03027, pepcterm_export, putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	2.45542e-62
NZ_CP046603.1\|WP_115840741.1\|1472342_1473380_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213023	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes bacterial poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, hemin storage system HmsF protein in gram-negative species, intercellular adhesion proteins IcaB, and many uncharacterized prokaryotic polysaccharide deacetylases. It also includes a putative polysaccharide deacetylase YxkH encoded by the Bacillus subtilis yxkH gene, which is one of six polysaccharide deacetylase gene homologs present in the Bacillus subtilis genome. Sequence comparison shows all family members contain a conserved domain similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, which consists of a deformed (beta/alpha)8 barrel fold with 6 or 7 strands. However, in this family, most proteins have 5 strands and some have 6 strands. Moreover, long insertions are found in many family members, whose function remains unknown.	2.94038e-36
NZ_CP046603.1\|WP_157029794.1\|1478479_1479247_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|274392	TIGR03018, pepcterm_TyrKin, exopolysaccharide/PEP-CTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.	4.40718e-47
NZ_CP046603.1\|WP_157029801.1\|1489070_1489556_-\|redoxin-domain-containing-protein	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.09231e-73
NZ_CP046603.1\|WP_157029797.1\|1483065_1484859_-\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|366356	pfam00884, Sulfatase, Sulfatase.	8.86263e-16
NZ_CP046603.1\|WP_157029800.1\|1486677_1487358_-\|DUF1275-domain-containing-protein	gnl\|CDD\|377734	pfam06912, DUF1275, Protein of unknown function (DUF1275). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although most members have 6 TM regions, and may be putative permeases.	2.59476e-31
NZ_CP046603.1\|WP_157029793.1\|1477063_1478428_-\|outer-membrane-beta-barrel-protein	gnl\|CDD\|274391	TIGR03016, hypothetical_protein, uncharacterized protein, PEP-CTERM system associated. Members of this protein family are found predominantly in exopolysaccharide biosynthesis operons marked by the presence of the EpsH-family putative exosortase and presence in the genome of the PEP-CTERM protein sorting signal. Members of this family may be distantly related to the EpsL family modeled in TIGR03014.	5.06967e-21
NZ_CP046603.1\|WP_157029799.1\|1485859_1486681_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	3.10837e-114
NZ_CP046603.1\|WP_157029789.1\|1471553_1472318_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213023	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes bacterial poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, hemin storage system HmsF protein in gram-negative species, intercellular adhesion proteins IcaB, and many uncharacterized prokaryotic polysaccharide deacetylases. It also includes a putative polysaccharide deacetylase YxkH encoded by the Bacillus subtilis yxkH gene, which is one of six polysaccharide deacetylase gene homologs present in the Bacillus subtilis genome. Sequence comparison shows all family members contain a conserved domain similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, which consists of a deformed (beta/alpha)8 barrel fold with 6 or 7 strands. However, in this family, most proteins have 5 strands and some have 6 strands. Moreover, long insertions are found in many family members, whose function remains unknown.	2.62611e-45

>NZ_CP046603.1|WP_157029796.1|1481758_1482844_+|UDP-glucose-4-epimerase-GalE
MRILVCGGAGYIGSHTCLSLIDRGHQVVIADSGVNSSPRVVPRLRRLAGVPVPVHRVDMRDRVALTALFATYRIDAVLHFAALKAVGDSCRRPLDYFDNNISGTIVLLQAMQDAGVRRLVFSSSATVYGEPAQVPVREDAALSVMNPYGRTKLVAEQLIEDLCTADPAFRAANLRYFNPVGAHASGMIGEDPCGEPTNLMPYICQVAVGAREKLRVFGGDYPTPDGTGVRDYIHVVDLARAHVDALETMARTDRSLTVNLGTGRGVSVLELVHAFERASGRRIAYDIVERRPGDAASVYADPSLAHEVLGWRAEYDVDAMCRDAWRWQSMNPDGYRTITRRESATRGRRPRIAAARAVDAV
>NZ_CP046603.1|WP_157029795.1|1480847_1481477_-|sugar-ABC-transporter-substrate-binding-protein
MRTFRFTAVAAVFGAMLFLSACASSGRGAIAPPPAESENLVDAYQIGIDDIVQVSVWRNPELGITVPVRPDGKISVPLVGDVSAGGRTPNEVAKEIQERLGAFVRDPQVAVILTDLRSHEYLSRVRVTGAVRQPISIPFRQGMTVLDAVLAAGGVTEFAAPAKSDLYRKSGDSTRSYAVRLDHILEDGDLTTNFKVAPGDVITVPERTL
>NZ_CP046603.1|WP_115841024.1|1479243_1480800_-|hypothetical-protein
MAAMVPVAFEEWRRRPVLLAGVFTAIALAALVFGMLLPKKYNSQTTILVEESNIIKPLMEGRAVPTSVVSRAAITREVAFSRKTMEDILRTGGWMAKNPTPLQQDQIIELITGRTIISNPRDNLIRVSYTDTDPARAHAVTKRFAELIIQESLATKERESRDAYDFIDSQVRAYHKKLIDAESKLEAYRKSNPDARPGIDGDVNSRIAELRRMVDTSRMELMDLQSQGNALQGQLNGENEVNLVQTRSGQLLARMAELEAEHDKLLMNYTEQHPDVVRVQHQIRDLEEEVRREDARQAALKSAPPSPAQPGTLGGTALGGVASFNPLYGELKSKTAENRRQAAAVQSRINTSQALLDQELARSRHIAASESTMAELSRDYEVNRDLYQDLLKRRENARVSMSLDAEQRGLSFRVQEPASYPLRGVGLRLVHVASAGLGAAALAPLLLLFGFVRLDPRVRSPYQIETASALPVLGSVPRYQTAPSRRLGTRRFVIAAMIFLVVPLVYGVVLALKMVNLQ
>NZ_CP046603.1|WP_157029794.1|1478479_1479247_-|polysaccharide-biosynthesis-protein
MTLPSEAVLETESERTDAERDTAPEPDLRPAITRTAGVELLTPTQLEDRAIIHRGGVSRPEVDAFRELRTRLLAAVEGSFVALVAPVSSGSGGSFVARNLATAMAFDETKSALLVDCDVRHPSQARTMKIETENGGLVEYLEDADADLSDVIYETGVNGLRLIPAGTTREIGAEYFSSVRMRLLLDSIRSRHPNCYVFLDGPPVRGTPDARILADIADVVILVAGYGRDTAATIAQAAANFDPAKFAGVVFNEGV
>NZ_CP046603.1|WP_157029793.1|1477063_1478428_-|outer-membrane-beta-barrel-protein
MASGRLQPVAGPSRRSALCIALLATLPAAVPVARAAQINYSIGGRVEHSDNIALTQTNPMEESTLATDVAFDVTQTGRNTTFVANGGVEYLYYTGGLFDDDVRASLVGQFNWNTWQDRMKVIIEDYANYEPIDVLSPDAPGNQQQVNVFVAGTQFNLRPGDATRVRLDLRYNNYWAEENDDFNGDRYNAAFTLWQEPSSTTRIGFTVEGSEVQYDQVSLDTLGADYRRLDSYLTWNRNLANIDLEIRAGYSWVELTDYNTKDDAPLFRTVLTWRPTSRSTLDMGVYYQFSDAAQELMTDVTDPTGVPANPAPGGAPSPDPSDVTIGPDLYRQRRIDIGYRYNGERFDATIRPYYEDNDYIDPTAQSEGNYGIGVGMSWSITPSLFLTGSMSAGVRSFDSFDRDDDDFSVYIGLTKILTRHWSMGFDLRHQERDSNANEASYDENAAIFSVRYTR
>NZ_CP046603.1|WP_157029792.1|1475892_1477107_-|glycosyltransferase
MTRMPPSSAFAIPAEPTATARVADRRIRLLLVTDTPVLAPGGSERFLQNLATRLPADAYRITLVQLHEQDMPGNHGRHLLTQPHLRMMSLPVHAVYDRSGLRAYRELSSMLRRERFDVVQSQHEKADVLNALLPRLPGTVYISNRRDMGFKKSPKLQHAFRWLNPRFDTVVAPARQILSGLAQCERLDPLRMTWIPNGVDTRHYAPVTLQRRLDARAVLGLDADAIVFGCVARITPVKRHVDLLEAFASMHRHVPQARLLLVGDGPGLPEIQAKIAELGLGEEVLLLSFRDDVADLLPAMDALVLCSSSEGMSNAILEAMACGLPVVATAVGGNLHLVQHEQTGLLVPPLDPISLAASLQWLAQSPHARRRMGLAARSRIEREFSLDSMVLAFDRLYHRLLGRE
>NZ_CP046603.1|WP_157029791.1|1474715_1475885_-|glycosyltransferase
MSQSRPFALQVRSSAGLYGADRVVLALNRALDRGGARGRLLSINNYRMQEQALHDVASSGGQDAVLLPCRGRVDAATIGALSAQIGAARGRTGTPPVVHVHDYKSAFYAWLATRREHYSAEPAPLVATLHGWVEGSTALRLYTRLELALLRRFDALVVVASEQIDRLARAGVPRSRIRHVDNGIECPVRDEAAASALRAQLRIAPDAHVFSAVARLSSEKNLAMLLRAFAPVASRHPHAVLMIVGDGPERESLETLAGELALNGRVRFLGMRHDMPAIYTLTDHLVLPSLTEGMPLVVLEAMACEVPVIASAVGDIPRLLEHSAHGRTVPPGDAEALESALEAAVTTPRARDIAARDFVRERHSAQAMAAAYVTLYRELLEARHARRAS
>NZ_CP046603.1|WP_157029790.1|1473376_1474888_-|hypothetical-protein
MRRHWSPHWKPPLPRPARATSPLATSCANATARRRWPPRTSRSIANCWRHAMRGAHPDAGGSRFPLAAKALRGAMPTGTRTRLPVVPGSAAAAQPTARATTRAPRNWALYLFLILLPLQNITAGYLPNIGGGFNFLNVMFLISLFTAMAQGGKLAPNEPVNTWTTVYAVYMTLSLLVGFHFVDDPTNHFNQLKDHMVGLFVVYVVQMSVRDWNGVRMVVFATLLPLPYIAKVVWNQHRSVASTHYTDDLRISGTFALLGANEFAAFCVTVAVVLFALLLACRLSRKWKIVLMGGIACMILGVLYAYSRTAYISLIMGMVVVIMVWRGRLKLILPLCLAVVIAPAVLPKSVVERFDSTTVEEGKRDESTELRIEYWKIAWANFLRNPVVGTGYHTFHHREINPYGRDTHNLYIRTLSEGGVFGAITLLGILLAVLRTAMREVREARTGTWRYALALGMMGAWVSMVIANLFGDRFTYYPVIAYFWAYMGLVMKARHLPPEDSAR
>NZ_CP046603.1|WP_115840741.1|1472342_1473380_-|polysaccharide-deacetylase-family-protein
MTALFRAWLRYSLALCSHYSGLDGLYRRLSGAGLVILMLHRLRDDHDPFPLSVSRRQLRQMLAWLRSSGALVGLDDGLRALSPERAQKIHYALTFDDGYRDNLGLIDANLGGPVPAVVYVATGHIGGEPIWAYRLVHAVESRSRDQIDLGGLGLGHFDLSLRDDRNRLYQLLPPRLKTLEPAELEAWIDHVCEQARPRPLPHEDREMLDWGDVRRLADGGVEIGGHTCSHAILSRLDDAAASEEIGLSSASIAAELGHAPRHFAYPNGGRDDFSDRDVRLVRDAGFATATTSIEGVNRPGADPYRLLRFNVHEERFQSPSGRLSKALFFSETSGMLGWLRGLRAA
>NZ_CP046603.1|WP_157029789.1|1471553_1472318_-|polysaccharide-deacetylase-family-protein
MGTLPILMYHGLHREESSRGRFDPVYSVHPEMFARQLDWLVQQGHRAPLLEDALSGANGTRDVIITFDDGDVSNVEIAMPLLLERGLRAEFFVTTDFIGQCGMLAPDDIRRLAANGMGIGSHGRTHSFLSDLDVADLMAELDDSRCRLQQICGRPIDSLALPGGRGGERELLAAQQLGYRHLLGSVPGPNKRRRADTWLQRLPVTRNLSLDDFAALVHWRGLPARWMQARHAALALPKRVLGNDGYQRLRERLL
>NZ_CP046603.1|WP_157029797.1|1483065_1484859_-|sulfatase-like-hydrolase/transferase
MGGWVSRAPAAWIAVKLVLIGACLLGTNRLLAERVAHIGLQPGLAVFAAVWLLCIVTMLVLAFHARTPARVVWSAIFFLGSTFTLSHALIVSRHLGLIEFEQLLGLIGFAHNLKGFHDAQILQAVAWSALGVIAINLPPWLAPPNSPSLLRWPQRNPGLLQLLPVVAIGAILYLRGGEGSNGFPGQYTTAAFAGVLGAEKVLAPPAPEREDIALPHLGQRPFRHIVLVMDESVRGDYVDLNVEDGVETGLRPLGTALANFGIAASTANCSATSNASVRYGVTRDSYLKDLQLNPSFWRYAARAGYRTVYIDAQRHDGKLQNFMDPREVGEIDEFVQVGTAFAPDAKDIEAGRLLNRVLLRDRPSFTYVNKMGCHFPYEGKYPTANTLYSPTMSRAFVSKETDDGSGYRQAENAEQRWRQVNSYRNCLAWNTRGFFREALANVDLSDTLIVYTADHGQNFHEDGSPGEQTHCTIGTASPGEGRIPLATITRNAELSPLLRDAARRNHDRGSAFNVYPTLLALMGYGPPAAGANFEADLLGTLPEDNTRFLSTYFVRFGREPVWNSIGRTTQLRDGLQRVLADDRHASSEDSGAASGAP
>NZ_CP046603.1|WP_157029798.1|1485012_1485867_-|alpha/beta-fold-hydrolase
MDDATPHDIRACELDAQADDGHRFQLIARIPVAPRASLLWLPAMGIGAKHYVPFADALARHGIAVFLHEWRGAGSSSVRASRDTDWGYRELLTLDIPASEAVIAQHVPEAPRIVGGHSLGGQLACCRLGLSPESAQRLWLVGSGAPYWRAFPARTAWWLPMVYRFLPWLADFHGVLPGRRIGFGGQEARGVIRDWSRSGLSGRYAAAGVDVDLEAAMAALTLDAHAVALARDWLGPVSSLRFLVSKLRRVEPRIDVLDAAALGTRADHYAWMKQPAAVVDALLR
>NZ_CP046603.1|WP_157029799.1|1485859_1486681_-|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MNDTALPPCALTIAGSDSGGGAGIQADLKTFAAHRVHGLSAIAALTAQHTRAVTAVHVPDVAFLRAQIDACFDDFTIGAVKLGMLANAEVILAVAEALEHHKPKHVVLDPVMVSTSGARLLEASALDALRTRLLPMATLVTPNLPEAELLIGERIEDVDAMHGAIDALHALGTKAVLLKGGHLPVDAARDEVVDLFADGDGVQAMSHARLKIDAHGTGCTLASAVAANLCLGRDLRDASIAATDYVHAALLRGYRPGRGDMLVLDHFGAAPNG
>NZ_CP046603.1|WP_157029800.1|1486677_1487358_-|DUF1275-domain-containing-protein
MITRLPAWVWLGAASLAMVAGMVNVVGYLGFEHQAITHLTGTTTLLGASFAHGDARASAHLALVVLGFVGGAVLSGAIIQDSTLQLGRRYGVALALEAALLVVSVPLFERQQIAGAVLAAMACGLQNAMTATYSGTLVRTSHLTGMFTDLGVFLGHRLRGLPADPRRLWLCLAIIGGFLLGGVAGALVFPHLSYRTLYIPAALTGTVGVAYVAYRLHRGPAGTLSP
>NZ_CP046603.1|WP_115840730.1|1487494_1488892_-|PhoH-family-protein
MTRSKRIYVLDTNVLMHDPTALFKFEEHDVFLPMQVIEELDNAKKGTSEASRNARQVSRFLNELIEAGGSDKISEGIPLNRPQGLQLRGAQSIGRLRFQTRDFDSGKRFGAVIPDNHILGSILALKEAEPGVPVVFISKDVNLRIKASIAGIVSEDYENDRALDDFSLLYTGATALPEDFWQRYGKDLKSWTEKGRTFYEIHRRDEDDFHPNQFLYLPGDEESELKVARVNDEKVVLQIVDDYRHHQHAVWGIAARNREQNFALNALMDPEIDFVTLLGTAGTGKTLLALAAGLAQTMDQQRYREIIMTRATVSVGEDIGFLPGTEEEKMTPWMGALTDNLEVLTHNQEGGSWGRAATNDLLASRIKIRSMNFMRGRTFLSRWLILDEAQNLTPKQMKTLITRAGPGTKIVCLGNVEQIDTPYLTETTSGLTYAVDRFKNWDHSAHITLRRGERSRLADYASEVL
>NZ_CP046603.1|WP_157029801.1|1489070_1489556_-|redoxin-domain-containing-protein
MPLDTGDRIPKNVSTLPLALSSGETAHLKDYEGGWLVLYFYPKDSTPGCTTEGIDFNALLPKFRKLGATVLGVSRDSIKSHQNFCAKQGFKFDLVSDGDEALCNAFDVIKPKKLYGREYVGVERSTFLIDPKGVIAQSWRPVKVPGHAQAVLDALKEHATQ
>NZ_CP046603.1|WP_115840728.1|1489587_1490148_-|glycine-cleavage-system-protein-R
MTDSASRPSPNENHLLINAYTTHPESPLLSVTRRIADSGCNLVDARLATVGRDVSVTTLAVGSWDSVAKLEAMLTRLEREEGLKLVWYRTGAKQVQSSLLPYVVEVVAADKPGILFQLADFFDRQGITIESLHSSRYRAMQTGAEMFSAQITIGVPSSMHIAALRDDFLEFCDHLNLDAIMDPMKF
>NZ_CP046603.1|WP_157029802.1|1490306_1491278_+|4-hydroxy-tetrahydrodipicolinate-synthase
MSSNPRAARADSCKRGPSEPKTLRLSGSITALATPFTASGEIDLDAWNRLLDGQLAAGTQGIVVAGSTGEAAALFDAEYDTLLRTAVERVAGRIPVLAGTGLSNTAKTIELTRRVAALGADAALVVTPPYVRPTQAGLIAHYRAIADDGALPVVLYNVPGRTGGDLLPETVAELVSHPRIVGIKEARSEPERMAALLELRSEEFAILSGDDPTACRAMFAGADGVISVASNVVPRAFRRLADLARAGQRDAALALDARLQTTYDFLGVEPNPIPVKALLARQGIGHGLRLPLLPLSAAHAGTAATIAALVAELELESHESLVA
>NZ_CP046603.1|WP_157029803.1|1491296_1491797_+|hypothetical-protein
MRPNVSIARAAVAGLLLVGVALGSGCSWFRKGSDLYAQSPETRPLEVPPDLDLPRTDTAVNVPSAAARQSVESGQASGGFGLATGREEAFAKVGEALAAVQGVTITSRAEALGVYDISYEGANFLVRVAGASTGSYVSAVDPRGLPATGAAPKKLIDTLRTALGAQ
>NZ_CP046603.1|WP_115840725.1|1491893_1492217_-|ferredoxin-family-protein
MPFVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPINAIYPEDDVPAGQEGYVALNAELSKAWPVITTRKDPLPDAKEWEGKPGKLDLLER

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Crispr_ID: NZ_CP046603_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046603_4

2026946-2027056

Orphan

Consensus_repeat	Method
CTTCGATGCGGTGGTGGCCTTGGCCGGCTTGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046603_4

>merge|NZ_CP046603|4|2026946-2027056|CRISPRCasFinder
CTTCGATGCGGTGGTGGCCTTGGCCGGCTTGGCGCCATCAGCGCCGCACTTGCCTTCACCGCACTTGCCCTCGGCGGCCTTCGACGCGGTGGTGGCCTTGGCCGGCTTGGC

>NZ_CP046603|4|4|2026946-2027056|CRISPRCasFinder
CTTCGATGCGGTGGTGGCCTTGGCCGGCTTGGC	GCCATCAGCGCCGCACTTGCCTTCACCGCACTTGCCCTCGGCGGC
CTTCGACGCGGTGGTGGCCTTGGCCGGCTTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046603.1\|WP_157030156.1\|2036710_2038114_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133045
NZ_CP046603.1\|WP_157030143.1\|2021492_2023208_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP046603.1\|WP_157030142.1\|2020470_2021685_-\|biotin/lipoyl-binding-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP046603.1\|WP_157030139.1\|2016972_2018523_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|237425
NZ_CP046603.1\|WP_157030157.1\|2038195_2039620_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340879
NZ_CP046603.1\|WP_157031667.1\|2024979_2025756_-\|DUF2063-domain-containing-protein	unknown	unknown	gnl\|CDD\|225760
NZ_CP046603.1\|WP_157030154.1\|2034450_2035623_+\|YaiO-family-outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|275183
NZ_CP046603.1\|WP_157030153.1\|2034070_2034454_+\|response-regulator	unknown	unknown	gnl\|CDD\|381164
NZ_CP046603.1\|WP_157030145.1\|2024041_2024983_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227311
NZ_CP046603.1\|WP_157030151.1\|2030522_2030996_-\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|223149
NZ_CP046603.1\|WP_157030150.1\|2030161_2030503_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_157030146.1\|2025748_2026609_-\|DUF692-family-protein	unknown	unknown	gnl\|CDD\|235447
NZ_CP046603.1\|WP_157030152.1\|2031200_2034074_+\|response-regulator	unknown	unknown	gnl\|CDD\|223715
NZ_CP046603.1\|WP_157030141.1\|2019726_2020386_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176859
NZ_CP046603.1\|WP_157030148.1\|2027315_2027993_-\|DoxX-family-membrane-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP046603.1\|WP_157030149.1\|2028274_2030035_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP046603.1\|WP_157030140.1\|2018547_2019717_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176243
NZ_CP046603.1\|WP_157030155.1\|2035538_2036714_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|379311
NZ_CP046603.1\|WP_157030138.1\|2015885_2016644_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376985
NZ_CP046603.1\|WP_157030144.1\|2023119_2023929_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223377

Protein	Function_ID	Function_description	E-value
NZ_CP046603.1\|WP_157030156.1\|2036710_2038114_+\|glycosyltransferase	gnl\|CDD\|133045	cd06423, CESA_like, CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of Glucan.	2.15299e-66
NZ_CP046603.1\|WP_157030143.1\|2021492_2023208_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.70428e-35
NZ_CP046603.1\|WP_157030142.1\|2020470_2021685_-\|biotin/lipoyl-binding-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	3.99226e-92
NZ_CP046603.1\|WP_157030139.1\|2016972_2018523_+\|PAS-domain-containing-protein	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	7.494e-143
NZ_CP046603.1\|WP_157030157.1\|2038195_2039620_-\|MFS-transporter	gnl\|CDD\|340879	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial, fungal, and archaeal multidrug resistance (MDR) transporters including several proteins from Bacilli such as methylenomycin A resistance protein (also called MMR peptide), tetracycline resistance protein (TetB), and lincomycin resistance protein LmrB, as well as fungal proteins such as vacuolar basic amino acid transporters, which are involved in the transport into vacuoles of the basic amino acids histidine, lysine, and arginine in Saccharomyces cerevisiae, and aminotriazole/azole resistance proteins. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin while TetB resistance to tetracycline by an active tetracycline efflux. MMR-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.18419e-39
NZ_CP046603.1\|WP_157031667.1\|2024979_2025756_-\|DUF2063-domain-containing-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	1.0007e-66
NZ_CP046603.1\|WP_157030154.1\|2034450_2035623_+\|YaiO-family-outer-membrane-beta-barrel-protein	gnl\|CDD\|275183	TIGR04390, hypothetical_protein, outer membrane protein, YaiO family. Members of this family share a domain of bacterial outer membrane beta barrel, up to the protein C-terminal residue (usually Phe or Trp). The member YaiO was shown experimentally to be localized to the outer membrane. [Unknown function, General].	9.56564e-38
NZ_CP046603.1\|WP_157030153.1\|2034070_2034454_+\|response-regulator	gnl\|CDD\|381164	cd19937, REC_OmpR_BsPhoP-like, phosphoacceptor receiver (REC) domain of BsPhoP-like OmpR family response regulators. Bacillus subtilis PhoP (BsPhoP) is part of the PhoPR two-component system that participates in a signal transduction network that controls adaptation of the bacteria to phosphate deficiency by regulating (activating or repressing) genes of the Pho regulon upon phosphorylation by PhoR. When activated, PhoPR directs expression of phosphate scavenging enzymes, lowers synthesis of the phosphate-rich wall teichoic acid (WTA) and initiates synthesis of teichuronic acid, a non-phosphate containing replacement anionic polymer. Members of this subfamily belong to the OmpR family of DNA-binding response regulators, which are characterized by a REC domain and a winged helix-turn-helix (wHTH) DNA-binding output effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.2714e-40
NZ_CP046603.1\|WP_157030145.1\|2024041_2024983_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	3.42056e-100
NZ_CP046603.1\|WP_157030151.1\|2030522_2030996_-\|Hsp20-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	1.93704e-32
NZ_CP046603.1\|WP_157030146.1\|2025748_2026609_-\|DUF692-family-protein	gnl\|CDD\|235447	PRK05409, PRK05409, hypothetical protein; Provisional.	1.24565e-143
NZ_CP046603.1\|WP_157030152.1\|2031200_2034074_+\|response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.18779e-48
NZ_CP046603.1\|WP_157030141.1\|2019726_2020386_-\|hypothetical-protein	gnl\|CDD\|176859	cd07817, SRPBCC_8, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	4.13457e-10
NZ_CP046603.1\|WP_157030148.1\|2027315_2027993_-\|DoxX-family-membrane-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.3146e-15
NZ_CP046603.1\|WP_157030149.1\|2028274_2030035_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	6.29519e-05
NZ_CP046603.1\|WP_157030140.1\|2018547_2019717_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176243	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	0
NZ_CP046603.1\|WP_157030155.1\|2035538_2036714_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	7.53113e-08
NZ_CP046603.1\|WP_157030138.1\|2015885_2016644_-\|hypothetical-protein	gnl\|CDD\|376985	pfam03073, TspO_MBR, TspO/MBR family. Tryptophan-rich sensory protein (TspO) is an integral membrane protein that acts as a negative regulator of the expression of specific photosynthesis genes in response to oxygen/light. It is involved in the efflux of porphyrin intermediates from the cell. This reduces the activity of coproporphyrinogen III oxidase, which is thought to lead to the accumulation of a putative repressor molecule that inhibits the expression of specific photosynthesis genes. Several conserved aromatic residues are necessary for TspO function: they are thought to be involved in binding porphyrin intermediates. In, the rat mitochondrial peripheral benzodiazepine receptor (MBR) was shown to not only retain its structure within a bacterial outer membrane, but also to be able to functionally substitute for TspO in TspO- mutants, and to act in a similar manner to TspO in its in situ location: the outer mitochondrial membrane. The biological significance of MBR remains unclear, however. It is thought to be involved in a variety of cellular functions, including cholesterol transport in steroidogenic tissues.	0.00285851
NZ_CP046603.1\|WP_157030144.1\|2023119_2023929_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	1.04368e-96

>NZ_CP046603.1|WP_157030146.1|2025748_2026609_-|DUF692-family-protein
MRTLESQTSAGLGLRRGLMPELLAMDDGAVDFLELAPDNWIGVGGRFGEQLGQLATRFPISAHGLSLSLGGVAPLDMELLRRTRELNQRLGVVMYSEHLSYTTDDGQLYDLMPIPFTDEAVAHVAARIRQVQDVLERRIAVENVSYYAAPYQALTEIDFINAVLAEADCDLLLDVNNLYVNAINHGYDAADFLARLPAERVAQYHVAGHYDEDIDLKVDTHGAPVKDDVWTLLDAAYRRFGVRPTLLERDFNFPPLHELLLETNRIRTMQLAHLDRQRLLEQTRAA
>NZ_CP046603.1|WP_157031667.1|2024979_2025756_-|DUF2063-domain-containing-protein
MPETTLREQQFALARHIRDPEGNRPPPGVQDRRLKVYRELFFHSIEGLLAGGFPVIRETLGTSAWLQLVRAFYAGHRSRTPLFTQIAGEFVAYLNGRADDDAIPPWLPELAHYEWVEQALFVSDAPLPKHDPDGDLLDGVPVLSPLAVPLIYRWPVADIGPQHRPDAAPDTPTTLLVHRDAEHQVQFTHISPLAYSLLESLSDHAWTGRAHLTALASRVGVEPAALEADGLRMLRDLRERGVVPGTRIDRTNGSGNAP
>NZ_CP046603.1|WP_157030145.1|2024041_2024983_+|helix-turn-helix-domain-containing-protein
MLTIGFVTPPGFQIMGLAAASAFELANTTAGEALYDIRILSEKGGPVVNSLGIPLETRVLARAKVDTLIVTGLLHPVASSPDLIRQIRKAGKSVRRIASVCTGAFILGEAGLLDGRRVTTHWFHARDLQARFPDAVVEDDRIFIIDGALWTSAGMSAGIDLALGMIEKDFGVALARAVAQKLVVYHRRGGGQSQHSALLELDAKSDRVQSALDYARSHLKSALSVEELADAAHLSPRQFSRAFRAETGQSPAKAVEHLRVEAARVMIEQGRHSMGEVAVETGFADIERMRRAFLRAFGQPPQVLRRNARRAAA
>NZ_CP046603.1|WP_157030144.1|2023119_2023929_-|SDR-family-NAD(P)-dependent-oxidoreductase
MNTPIHQGTALITGASSGIGAIYAERLARAGHDLILVARRGDALRSLAQDLTTRTGRSVETLVADLTRPDDLARVESVLRTDASITLLVNNAGVGATAPLLQSDVADMDRMISLNVSVPMRLAYAAAPAFVARGTGTIVNIASIVALQPELLNGVYGGSKAFVLALSQSLHHELADKGVRVQAVLPGATATGFWAAAGTPIEHLPQEIVMSADDMVDAALAGLAMGELVTIPALPDIAQWNAFESARTALRPGLSRTSPASRYRTAQAA
>NZ_CP046603.1|WP_157030143.1|2021492_2023208_-|MFS-transporter
MRSKARVPRCGRACRALRLRRVTGRRRPPDRWRTPTPERVGFRGSTAMNASVAAAPPSHPMPTIGRAVPTALAGAFFVNLANQFTATNLADIQGSLGASADEASWIATIYTMTSFVGIVLSPILLRTFGLRRYFVNAAAVFAATAWMAFAATSLPMMIVARALQGVAGGSFGPIAFVAVFALWKGPRAMGGLALLAAALLLPANAGPIVSAFVEASFGWRALFLLQAVLAAALLCTGLAWMPVAPVNRDALKTHWPAVTLLGIALASLVLVLSRGTRRFWLEDDVIAIATSVSIGAWVGFAVLNRYATPRILDTKLLAGRDFGLPILLNLVFRASFAVTVYLIPLLLAVTQGYRPEQTAQALWWCVLPQLAVFPLVWQLLARTDGRRVALGGLLLCAIGTLLAASSTNLAAAEQLRASLMLVGVGQMMFLVPTLLSGASTLGPADGPTATVAFNATTLGGTTLGTGLMSHFVTEREKFHSSVLVEQVSWLGSASSDRLSSLAGALDARWGEQDANVARAIAQLASVVRREAWLLSIDDAFLVIGAVLLVSLCLVAFMRPAVIRPSLAGETP
>NZ_CP046603.1|WP_157030142.1|2020470_2021685_-|biotin/lipoyl-binding-protein
MGRTGCERRPRDRATRVRRSPGSVAAVHRRRLPRDRRRAAGVPVPGRFHAAGRHPSLACGRNPMKSRTATVIGLLVAVAATATAAAVMRPGSLVQSWDRHYTDNAFVRGDITQISPKVSGHIARVIVKDNQSVKAGDLLFQIDDRDYRARAAQARAVLSARQAAIGNLDAQLRLQLAAIEQAQASVSEASAEAARSDRDSNRGRALAKDQLIAVSQLDQLVSGAQVAATRVAEMRAALGAARERIGVLESQRPQLQADIRAAEAAVMLADLDVESTSVRAPVDGRVSERIARVGQYVRSGTPLIALVASDVWVVANFKETQLDGMQPGEDVDVVVDAIPGETFHGRIDSLSPASGAQFALLPPDNATGNFTRIAQRVPVRVSLVDDGADIERLRPGMSATVRVR
>NZ_CP046603.1|WP_157030141.1|2019726_2020386_-|hypothetical-protein
MTTRMQANAACKVRASDGNRCSRDRLRLHFRLPSIRSNRTKVRVCSKEQSVETSSTADSWVQRSLTIRATPEQLLERWSDPEVQRAVLHDRATLVSGDRQQMVWSVRTHGDRHVDVRSRQVEWNEGRSVRYLSEGDRDLRVESELIVTPGPADWGTQASLRVGYSLPGGVVAETLAKWLGSAPELLVSTVLHRFKALLETGEFPTLERNPSARDNDDNP
>NZ_CP046603.1|WP_157030140.1|2018547_2019717_-|alcohol-dehydrogenase-catalytic-domain-containing-protein
MRALCWNGVNDLRVETVPDPVLVNPRDAILKVRLTTTCGSDLHFIDGYLPTMREGDIIGHEFMGEVVEVGPEVRRVKRGQRVVVPSFISCGSCWFCDRKQFSLCDNTNPHWAMQEPLLGQATAGIYGYTHAFGGYAGSHATFIRVPHADIGCFEVPEQVSDDDALFLSDAGPTGFMGADFCDISPGDTVAVWGCGGVGLMAQQSARVLGAGRVIGIDRLPERLAMARDIVGSEIIDYSAVDSVPDTLREMTGGRGPDACIDAVGMEAHGEGLLHAMDRAKQALHLVSDRGQALREAIHACRKGGVLSILGVYGLMDKFPVGVIMNKGLTVRTAQQHGQRYVPRLLELAANGELSTRFLMTHRMPLEESVRGYEMFKKKEDGCVRAAFVP
>NZ_CP046603.1|WP_157030139.1|2016972_2018523_+|PAS-domain-containing-protein
MMESVTSDRGLLTQIVEQSRIGIIVTSVGDDQRILYANQAFLDLTGYALDEVVGRNCRFLQGANTAPDAIAELREAIREGRTAVIELVNYRKDGSEFWNLLHVHAISGADGQPQYLLGYQRDVTQRRTLEQGLQQVRRLEALGVLTGGIAHEFNNMLQVMTTTLDMIEYHGAGLAGRMATPIDNGRAAIARVEALTRQLQTFAKGKPGATATAQVNEVVESLREILTNALGEEVQVEFDLSATVGSCCIDRVLAETCLVNIAINAKEAMEGRADRRLLVRTGRRDVGTNQAQVHRIEPGAYFSIELADTGRGMDAATLERALDPFFSTKGSRGVGLGLSTAYGFARQSGGTLTIESEPDKGTRVTLLLPAVHAETGSAREAGAVEDARRPLRLLMVDDREDLVFIVRDMLRNEGLDVTTASDARQALARLEDEGPFDVMLSDVVMPGEMDGIALARHAREHYPYTRILLMSGFTGRELAPEAAEFDLIAKPFRFPELISRIRKALAADSRTRLSSA
>NZ_CP046603.1|WP_157030138.1|2015885_2016644_-|hypothetical-protein
MRYLALLAALSMPVVAFLTMRGAFGPDTGTVSDRYPTLLAAAGYAFGIWGLIFLLDIAYGGWQLTRDRRPRRERIAPFATAGFVLTAAWMPVFSMGWFVAAWAIIVAALACLLYCAIALSQVRRAWPGQAVFAWLPLSLHAGWLSLAAFLNTAQLIVAHGWLSTAVQLPWSLALLGGAAALLLLANLAMRGNIPYVAAAVWGLVALYVEQSASPLDGARITAIAALLLALVLLVQCTWLRWTRDVPPLGVKA
>NZ_CP046603.1|WP_157030148.1|2027315_2027993_-|DoxX-family-membrane-protein
MSTSLSRRAAPPFFSRVDGVGQWLSPLGLRVLLAWEFFEAGLEKLHGANWFADLGDKFPLPFSLFSANVNWNAAMWLELAGGVALLLGLGTRYVAAALFVLTVVATYAVHWPSDWSNVGELLQGYAITNDGFGNYKLPLIYLVMLVPLMLNGGGRLSVDRLIAWWSSPASTTSADATAWGAVLLGIGAAVSLLLPVAGGALALVGAGLLAWNRARGDSGRELVNA
>NZ_CP046603.1|WP_157030149.1|2028274_2030035_+|alpha/beta-fold-hydrolase
MSPRSRIALMRLAIVVLALAPVACRSLGESPGKSPQLQPATVEAHEDAARAWANSARRASTPAAAGRAWLLCAAHAYDALKGGAASSNDMASLATRCTDDFLVYALTQNRSWSEGPLRVAGTELSVEFRQLSPYLVPPLDVTLARQVSMEVYRGKRYSTDGFGVPLALLGKRCEDAPVCSLLPPEGVFRGATAWVETDAHGRPVLVLSDPLRTPQVTIGASHYLLASDTSAAWARGAQTSKLHRLGVWGLFGGREVGRRAGVFLLEDYDPDKKPLVMIHGLGSSPLMWAGLSNEIWGDAALRSRYQVWHVVYQTNAPLLVNRLRVQGYLDAAWKALDPEGDDFARSNMVLVGHSLGGVVARMLCSDSGDVLWNAAFVTDAGRMQAAPSDLAIVDATFHFTAYPGVGRAIFLAAPHRGSPAATRWFGRVARVLVGRRAPEIQSLRRVAQANPEAVQPVLLDRYLRGWVNSISTLQSAQPVRAAGERLMPREGITYHTIAGALPRYDFESDGVVPVASTLLDGAQSTLVVRYGHDLEESPEALAEISRILHEDVACGPGWQWELERSRAACEAGAPGRSAAKGRPESR
>NZ_CP046603.1|WP_157030150.1|2030161_2030503_-|hypothetical-protein
MDRSTEEAMCSLQAQVHVQGLALRALAATHPDPTALLAAWRNILADAEAGPISVRERDSAYLDELCRIRAEDWTAELVDLTLPRLDAARIAVSDGSVVPVATAGGMKGSTGPA
>NZ_CP046603.1|WP_157030151.1|2030522_2030996_-|Hsp20-family-protein
MNEMVRNPQWPAQGSMKDPVKQIFDRLFEGSLFQNTADESSVVTSQWVPRVDIKEEADRFLLYADIPGVDPQDIEVQMDKGLLTIKGERREEKVHETERYSRIERRHGLFHRRFALPDSADPDGITASGHNGVLTISIPKRPESTPRRIQVGAVLNS
>NZ_CP046603.1|WP_157030152.1|2031200_2034074_+|response-regulator
MEPPTWQDRAAGGRAGDRGKRGVGKPRIRLHNIGFGLALLVILLLLAQARRTQEDLLRSNQAFSRSAEVLTTVQDTLSALQDVETGMRGYVITGADAFLQPYHDGNRRLVQARARLRELAGSQRDAAWWGRANHDIDERLRLAKVNVDLRRRAGLEAASQSVAQAGGKEAMDRVRSLLGELEAAERERMIVEGRAVERRVAEFRRWTTWGTAVALVLLAAALLSVHRSLVQRREALHLARAGEARQRAILDAIPDLLWQFDTNGNPRLLSSDYGATLPPALLVAIRSALPHVQADSAVHTLTAQEASGQVFEARLVAIDDGHLAIVREVTEFIVQERALRDQHDFLRAIVDSDESLVFVRSAGGRFTLCNIAFAATMGLTPSQVEGRRPSDLAGQRIIEPLLQADDALLQGEDEWRADRVRIVDVREQERWMQVLKRPLVRSDGQRQVLTVVIDVSAQQRMERMKDEFISTISHELRTPLTSIRGALGLVVGGTAGELPDSVRPLLEIAHKNTERLVRLINDILDIEKLQWGGLSLQTHRLPLRAMVAQSIDQIATYAREFEVTVEFGPGDDGVVEVDVDRFAQVMANLLSNAIKHSHAGGVVEVSVTRRDEGLQIDVRDHGEGIPENFRPRVFERFAQADASDVRRRGGTGLGLAITQSLVEKMSGRIGFETETGQGTRFFVWLPEAMRLNDPAPSKAADDLTPYVVLLQDESALADELARVLREHGYRTLLANDIARARELLQSPNAKALAIDLGSAGTSARGVLRELRSEPEFRSLPVLLLGIRPPSVDSDGLRGGAVGVVDWLGKPLDPEQVAEAVRTTLRDPSRRFEVLHVEDDEDVCALLRTLLQGQGLNLHAAGSLAQAREQLSQRRHDLVILDLKLPDGDGSELLEELARARPPTPVIIFSAQDGGLAESRAVLRRLVKSRHHARELATLILDTLRHWPAGGAQKEETG
>NZ_CP046603.1|WP_157030153.1|2034070_2034454_+|response-regulator
MSSATHVLMIEDEEDIALIVRYLLERNGFTVEHLADGRAGLERIQTGAVPDLVLMDFMLPFRDGLELVERLRAQPQWTSVPVLMLTAKAREADIVRALEIGADDYVTKPFQPEELMARIRRLLRRSL
>NZ_CP046603.1|WP_157030154.1|2034450_2035623_+|YaiO-family-outer-membrane-beta-barrel-protein
MRLRDAARLSVLGLAMTFCTANAQTVEQAQALIELRKYADAARVLEQRLAVAPDDADAMFLLARTHAWNGEPTRALPLYERLLARAPDNVDYLLGYGQALGWAGRNEEAIEVLARAQRLAPDYADIGPALAQARAAQAAAVSPEPLLPSPTDAPRAAAPQTPERRRTVSLSARHDWLDGAYDDWSGVRVDASSSQRGRFGGYGAITADRRFDLDDVGVEAGALLPLGDTWLLQPEVGVVPDADFLPRYYADLRVQHTFAHGWIGSASLRTSDYPDTRVDRLAVGVERYWSQWRAAYTFNLTRLRDTHSPGHDVRLARAYGDGSEIGLQLAFGREAALVDTGVVASDVRGAVLFGRHVFAQRWSWLWNAGVVEQGDLYTRRGIGIGLERRF
>NZ_CP046603.1|WP_157030155.1|2035538_2036714_+|HEAT-repeat-domain-containing-protein
MAVECRRGRAGRSVHAPRHRHRAGTALLTMEWTSWLPVDPLLRLASLIASLLAVVTVLVLLQVLVLSTLATRQRRAREAFDRQWRPHMAMASLDNDIACDLPAPRGRRRLWWLMLWNKLQRKLRGEATSRLNRLLLSLGLDEYALRLLRFPGVRNRLVALETLRHLGDPAHWEAVEPLAHGRNPFVAFAAAQALIAMDAPRATRTVLPIALEGEHWGGQRLVALCRQAGRDAVTDALLDLLARADARALARLAPLLAFADPVRAAPWARERALGDADARNRQASLKALGELGDPRDKPLIVRSLRDEDPAVRLTAAQALRASADLSDIEVLLPALADQSWWVRREVADTLAALPRMDDGALQSLLPRVEDRYGREALERARAERAMRAGRA
>NZ_CP046603.1|WP_157030156.1|2036710_2038114_+|glycosyltransferase
MSGEFLFALQLFFIGYFVLLNGGYLVLNLLSMLSLRSYMRQRAEYGTDAPYLGIEPAISLLVPGYNEEATIRTSVRSMLQLQYPDFEVVVINDGSKDGTLATLVEEFELVPHPEVVRRAVPHKPIRGVYRSLRYGNLRVIDKENGGKADALNVGINVARNRLFCAVDADSILQRDSLLRIVQPFIEDERTVAAGGTVRIANGSEVRGGFLVKSGLPRNLLARMQIIEYLRAFLFGRLGWSPLNGVLIISGAFGLFDRARVEAVGGYRTDTVGEDMELVVRLHRWHRRKRIAYRIRYLPDPICWTEAPEDLGTLGRQRSRWQRGLAESLMFHPPWRFGWRAGAAGYLAWPFMALFEWVGPLIELTGYVFMIVGFLMGWVSPVAFTVFIAVALGMGILLSVNGLLLEALSFRVYNRSRDMLWLFAMAVLENFGYRQLNTLWRCRGMWQWMSRRKHQWGAMKRSGQWGRM
>NZ_CP046603.1|WP_157030157.1|2038195_2039620_-|MFS-transporter
MNSSIAIPDAKHPDSRRWVALVVLLTGTLLPPLDFFIVNVALPAIREDLRAPSDVSQLVVSVYATAYAVTLVLGGRLGDIVGRKRAFLAGMVGFAAASAVCGLAPSSDVLVAGRLLQGMSAAVMAPQSLAFIHALFQASEKNRALSWYGATFGLASVAGQVLGGLLVAASPWNLGWRSVFLVNLPVIAVAIPAALVLLPERKASNPDRLDISGAALLALGLLALVVPLIEGREHGWPTWSLGALALAPLLLAAFWRYQNARERSGASTLVSPMALSSRGLRRTLLSTLFFYALAAFFLTFSVYQQIGLDRSPLAAGIAILPLGFGLLCGALAGPWVARWLHARTAAFGMGLEAAGLAITAMLVAFAKPSWLPLPLFLIGVGQGIAHPALVRLNVDQVEARWAGLAAGVVSAVLQISAALSVALVGGVFFSLAPDGASAKDVADGFSAASTIMAFALAFAAALAWRRDARRPSDV

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Crispr_ID: NZ_CP046603_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046603_5

2813660-2813748

Orphan

Consensus_repeat	Method
GATGCATCACTCGCGAGCGCTCGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046603_5

>merge|NZ_CP046603|5|2813660-2813748|CRISPRCasFinder
GATGCATCACTCGCGAGCGCTCGCTCTGGCCAATGGCCCTGCGGAAGCACAGCCCGGCCGCCCGATGCATCACTCGCGAACGCTCGCTC

>NZ_CP046603|5|5|2813660-2813748|CRISPRCasFinder
GATGCATCACTCGCGAGCGCTCGCTC	TGGCCAATGGCCCTGCGGAAGCACAGCCCGGCCGCCC
GATGCATCACTCGCGAACGCTCGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046603.1\|WP_115842915.1\|2820944_2821652_+\|phosphate-regulon-transcriptional-regulatory-protein-PhoB	unknown	unknown	gnl\|CDD\|131209
NZ_CP046603.1\|WP_115842925.1\|2807209_2809648_-\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NZ_CP046603.1\|WP_157030693.1\|2804112_2806092_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|182731
NZ_CP046603.1\|WP_157030697.1\|2819190_2820840_+\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|227122
NZ_CP046603.1\|WP_157030691.1\|2800229_2800934_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP046603.1\|WP_115842923.1\|2811307_2811934_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP046603.1\|WP_157030699.1\|2823113_2825210_+\|polyphosphate-kinase-1	unknown	unknown	gnl\|CDD\|235469
NZ_CP046603.1\|WP_157030694.1\|2812077_2813376_-\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NZ_CP046603.1\|WP_115842926.1\|2806716_2806989_-\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP046603.1\|WP_115842919.1\|2816958_2817966_-\|isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|181606
NZ_CP046603.1\|WP_115842935.1\|2803179_2803974_+\|enoyl-ACP-reductase	unknown	unknown	gnl\|CDD\|223696
NZ_CP046603.1\|WP_115842924.1\|2809855_2811145_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_CP046603.1\|WP_115842912.1\|2825300_2826830_+\|exopolyphosphatase	unknown	unknown	gnl\|CDD\|223326
NZ_CP046603.1\|WP_157030696.1\|2815441_2816761_-\|Na+/H+-antiporter-NhaC-family-protein	unknown	unknown	gnl\|CDD\|224671
NZ_CP046603.1\|WP_157030695.1\|2814603_2815368_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378959
NZ_CP046603.1\|WP_115842918.1\|2818148_2818547_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NZ_CP046603.1\|WP_157030692.1\|2801026_2801794_+\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
NZ_CP046603.1\|WP_157030698.1\|2821788_2823117_+\|phosphate-regulon-sensor-histidine-kinase-PhoR	unknown	unknown	gnl\|CDD\|274368
NZ_CP046603.1\|WP_157030690.1\|2799747_2800233_-\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927
NZ_CP046603.1\|WP_115842917.1\|2818658_2819024_-\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|274017

Protein	Function_ID	Function_description	E-value
NZ_CP046603.1\|WP_115842915.1\|2820944_2821652_+\|phosphate-regulon-transcriptional-regulatory-protein-PhoB	gnl\|CDD\|131209	TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well. [Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	1.02442e-135
NZ_CP046603.1\|WP_115842925.1\|2807209_2809648_-\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP046603.1\|WP_157030693.1\|2804112_2806092_-\|peptidylprolyl-isomerase	gnl\|CDD\|182731	PRK10788, PRK10788, periplasmic folding chaperone; Provisional.	1.28668e-79
NZ_CP046603.1\|WP_157030697.1\|2819190_2820840_+\|M48-family-metalloprotease	gnl\|CDD\|227122	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only].	2.22583e-122
NZ_CP046603.1\|WP_157030691.1\|2800229_2800934_-\|hypothetical-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	0.00140876
NZ_CP046603.1\|WP_115842923.1\|2811307_2811934_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	1.37559e-157
NZ_CP046603.1\|WP_157030699.1\|2823113_2825210_+\|polyphosphate-kinase-1	gnl\|CDD\|235469	PRK05443, PRK05443, polyphosphate kinase; Provisional.	0
NZ_CP046603.1\|WP_157030694.1\|2812077_2813376_-\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	5.97796e-137
NZ_CP046603.1\|WP_115842926.1\|2806716_2806989_-\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	5.13849e-41
NZ_CP046603.1\|WP_115842919.1\|2816958_2817966_-\|isocitrate-dehydrogenase	gnl\|CDD\|181606	PRK08997, PRK08997, isocitrate dehydrogenase; Provisional.	0
NZ_CP046603.1\|WP_115842935.1\|2803179_2803974_+\|enoyl-ACP-reductase	gnl\|CDD\|223696	COG0623, FabI, Enoyl-[acyl-carrier-protein].	7.21975e-146
NZ_CP046603.1\|WP_115842924.1\|2809855_2811145_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NZ_CP046603.1\|WP_115842912.1\|2825300_2826830_+\|exopolyphosphatase	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	9.33064e-155
NZ_CP046603.1\|WP_157030696.1\|2815441_2816761_-\|Na+/H+-antiporter-NhaC-family-protein	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	1.04611e-62
NZ_CP046603.1\|WP_157030695.1\|2814603_2815368_+\|hypothetical-protein	gnl\|CDD\|378959	pfam12811, BaxI_1, Bax inhibitor 1 like. The Bax-inhibitor-1 region of the receptor molecules is conserved from bacteria to humans.	1.9104e-92
NZ_CP046603.1\|WP_115842918.1\|2818148_2818547_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	2.4267e-18
NZ_CP046603.1\|WP_157030692.1\|2801026_2801794_+\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	1.83388e-132
NZ_CP046603.1\|WP_157030698.1\|2821788_2823117_+\|phosphate-regulon-sensor-histidine-kinase-PhoR	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	8.65467e-165
NZ_CP046603.1\|WP_157030690.1\|2799747_2800233_-\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	2.1905e-100
NZ_CP046603.1\|WP_115842917.1\|2818658_2819024_-\|glutaredoxin-3	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	2.18966e-46

>NZ_CP046603.1|WP_157030694.1|2812077_2813376_-|trigger-factor
MQVSVESLGNLERRMTFSLPADRLEAQVGGRLREISRGAKIKGFRPGKVPAKVIEQRFGAQVRADVLNDLLREGFSTAIREQSLQIAGNPQIVPAQGEDALSYVATFEVVPDFGDIDVAKLNVVRHTSEVSDADIDAMIENLRLQRRTWNPVEREAAAGDAVEIETYSQVGDERLPAEGVERGATIIGSAAMFPAIESALVGMKAGDEKDVDVDFPADWRVPAFAGKTVKVHLVATKVSEPVLPEVDAAFIKSFGVRSGDPDQFRVDIRSNLERELKGALMTRLRREVGEQLIASYSHVEMPPKLVEAEARDMARQTIETARRQGRAIGEIPADAHVGFMDAARKRVLVGLLVGEIARRNELRLEPKRVTETLNLIASTYEEPQQVIELYRNDAQLMNGLQARVMEEQVIDWIAERAQHTEQPLSFNEAIRQ
>NZ_CP046603.1|WP_115842923.1|2811307_2811934_-|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MDNLTKALNLVPMVVEQTSRGERAYDIYSRLLKERVIFLVGGVDDHVANVIVAQMLFLEAENPEKDISLYINSPGGVVTAGLAIYDTMQYIKPDVSTICVGQAASMGALLLAAGAKGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILTLRQRLNEILAKHTGQALETIARDTERDNFKSAEAAREYGLVDQVLERRPEDSIQAG
>NZ_CP046603.1|WP_115842924.1|2809855_2811145_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MSDDRQGRSTGDSNKILYCSFCGKSQHEVRKLIAGPSVFICDECVELCNDIIREELEEKAQSARSHLPKPREILEVLDQYVIGQQRAKRTLAVAVYNHYKRIESRQKNDDVELAKSNILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTRNILFVVGGAFAGLDKIIQQRSTEAGGIGFGAKVKSSERKNDIGKLLADVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALVKILTEPKNAITKQFKKLFEMESVELEFRPDALSAIARKALKRKTGARGLRTIVESVLLDTMYELPSLENVSKVVVDESVIDHKTEPYLIYQTPPAAPKVAAAD
>NZ_CP046603.1|WP_115842925.1|2807209_2809648_-|endopeptidase-La
MAVSTEHETLTLPVLPLRDVVVFPHMVIPLFVGRDKSIHALDVAMEADKRILLVAQKSAETDDPGADDLYKVGTLAQVLQLLKLPDGTIKVLVEGVSRVNVHDVTERGGALSGQAEVVEPESDREEREIEAIARSLMGLFEQYVKTNRKLPPELMQTLSGIDEPGRLADTIAAHLGVRIGDKQKLLETHGVGARLEQLVGLVDGEIDVQQLEKRIRGRVKSQMEKSQREYYLNEQMKAIQKELGEIDDAPNDIDELTRKIAEAGMPKAVEAKAKAELNKLKQMSPMSAEAAVVRNYLDWLLGVPWKKRTKVRKDLKAAQDVLDADHFGLEKVKDRILEYLAVQSRVKQMKGPILCLVGPPGVGKTSLGQSIAKATNRKFVRMSLGGVRDEAEIRGHRRTYVGSMPGRIVQNLNKVGSKNPLFVLDEIDKMSMDFRGDPSSALLEVLDPEQNNAFNDHYLEVDLDLSEVMFVATSNSLNIPGPLLDRMEVIRIPGYTEEEKLNIAMRYLLPKQIKGNGLKPEELKVAESAVRDIVRYYTRESGVRSLEREIAKICRKVVKEIALAGPSKKGAKKNVVNVTSKNLDKYLGVRRYDFGRAEEQNEVGLVTGLAWTEVGGDLLQIEATLVPGKGQLLLTGQLGDVMKESASAALSVVRARTEQLGIDLDFLQKHDVHVHVPEGATPKDGPSAGIAMATALVSMLTRNPVKADVAMTGEITLRGRVLPIGGLKEKLLAALRGGIRTVIIPEENRKDLADLPKTVTQGLKIIPAKWIDEVLNIALERAPTPAPASASGEGETPVRDGSKTVTQTDVKH
>NZ_CP046603.1|WP_115842926.1|2806716_2806989_-|HU-family-DNA-binding-protein
MNKAEFVGAVAEAAELSKTDAANAVDAMINVVTKALKKGDTVTLVGFGTFQVRKRAARQGRNPKTGETIKIKASKNPSFKAGKALKDAVN
>NZ_CP046603.1|WP_157030693.1|2804112_2806092_-|peptidylprolyl-isomerase
MLQKLRDKTSGWIATVILGLLIIPFAFVGIEQYLGQRTDNSVARIDAPPTWWPTAPAWWPVSVFWTHEKITSDEFRSRFEQERMQRRAQQGEAFDARAFESVDNKRAILETLIDARVQQVAAQRNGLVVSDAMVQKAIMDVPGFQVDGKFDYARYKLALASLTPPQSERQFEATVRDDVQRSMLAMGVGNSNFVTTAEMDRLIRLMGERRDVSLVLLPPPAPDTAEVSATEIQKWYDAHTAQFRAPETVEIEYVEVDASKLPPPAAADEATLRHRYEQEKARFVEAEQRLASHILVRVDEKADAAAQKAAEEKAKRLAEQAKAPGADFAALARANSDDTGSQVAGGDLGWVAKGMMVAPFENALFAMKAGEISAPVKSEFGWHIIQLRDVQTGSQQTFEQVHDQLAREQAEVDRERTVSDFTSRLVDLTLKNPSSLAPAARDMNLPLQKLGPFARTNAQGIGANPAVQRVAFSEEAIQSGAISDPIEIAPGHSVLLRVTAHTAEHAQPLAQVRDQVIAAVRADRASKAARKEADALVARVNKGETLDAIAAEKQLPPPQVVPGVPRGAPVPEAAVSDAIFAVPAPAAGKLSAGHAELSNGGIALFAVSQVTPGDVATLPAEQRQMLQQQIAQVGGGDDVRALVDSLRKRVKVQVVEQNL
>NZ_CP046603.1|WP_115842935.1|2803179_2803974_+|enoyl-ACP-reductase
MGFLQGKRALITGIASERSIASGIAEAMHREGAELAFTYQNEKLKSRVQSAASEYGSDIVIPLDVSDDAQIAACFEQLGQRWNDGFDILVHAIAFAPREAIAGEFLDGMTRENFAIAHDVSAYSLSALAKAARPMMKGRNGSIVTLSYLGAERALANYNLMGVAKASLEASVRYLALNLGPEGTRVNAISAGPIKTLAAAGIAGFRKILGHVEENAPLRRTVTIEDVGNVAAFLCSDLAAGVTGEVTYVDAGYNILGMTGIHGE
>NZ_CP046603.1|WP_157030692.1|2801026_2801794_+|hydroxyacylglutathione-hydrolase
MHLTPLPALSDNYIWTLAADDGARALIVDPSEAGPVFAAADAGLQPAGVLLTHHHGDHIGGVPALLERWPGLPVFAPDDDRIPADYRRVADGEAIDVAGWHFNVLAVPGHTRSHVAYHGHGLLFCGDTLFSLGCGRMFEGTAEQMHASLSRLAALPPGTRVCCGHEYTLANAAFARVVEPGNPALQRRFEEATAMRATGRPTLPSTLADELAANPFLRVDRPEVRASLARETGRAPADDVDAFAALRRWKDGFTA
>NZ_CP046603.1|WP_157030691.1|2800229_2800934_-|hypothetical-protein
MPAAHPPRQSETSGSALGWFSSEAGQGLLAVEEAAMLRVLASCPAAAWGWLGVVGAPAPEVGGRGLLLRRFGLGFHGAVRCRLPLPVASEALGAVLLQHALDDEVPIDPLLDECARVLAPGGTLWLAVLNPWSPYRLRWARTGLRARDPGVWQSALRRAGFASDTVSLQWLGPHWRVAHGEVGVGASDRLRAGVALTVNKRVHALIPPKPLRGLRWQAGTRSHLVRREPAIMDP
>NZ_CP046603.1|WP_157030690.1|2799747_2800233_-|ribonuclease-HI
MNSPDPTSAPSPKHIEAHTDGACLGNPGPGGWAALLRYRGHERELSGGEADTTNNRMELMGAIMALESLSEPCSVLLHTDSQYVRKGITEWINNWVRRGWKTAAGEPVKNRDLWERLHTATLRHRVEWKWVKGHSGDPDNERVDVLARLQAQQFRASATAR
>NZ_CP046603.1|WP_157030695.1|2814603_2815368_+|hypothetical-protein
MIGRSGNPALKDSTFLDLSSGAVVQRDSKAMTLNGTVNKTGMLLLLCVITAAFAWSQVQFTETGSVGAMPYILGGAIGGLVFAIATIVKKEWAPVTAPLYALTEGFFLGAISAIFEHRFPGIVMQAVMLTFGTLFALLFAYRSGLIKATENFKLGVVAATGGIALVYLASFVLSFFDVRVPFIHESGLIGIGFSLFVVVIAALNLVLDFDFIESGVEQNAPKYMEWYGAFGLMVTLVWLYVEFLRLLSKLQSRD
>NZ_CP046603.1|WP_157030696.1|2815441_2816761_-|Na+/H+-antiporter-NhaC-family-protein
MNEPVRPSALALTPLLVFLALFFGAGLYFTSHGETMGFYQLRAPVAILPALGLAAFIAWRRGLKPLETLLGGMGDHNVVLMCLIFLLAGGFVEVSKAIGAVDAIVALGIGHLHPALLLPGLFVVAGFISLSLGTSMGTIAAVAPIALGVSDASGLDRALVLGAVIGGATFGDNLSVISDTAIVASRTQGCTMREKFRENLKLALPAALLTVVVLGFIGETAPVQTLEPVSPWLIVPYVIVLGLAMAGVDVIIVLSLGLVIAGLFGAFFTDEFGVAAYATHIWEGFESMVEIILLSLLVGGLGALMKATGGLAWLAQSIGRFARGHRSRRAGEVSIAALSATTDVFTANNTVAILISGGLARDIAQQHGVPPARAASVLDIFACVTQGVLPYGAQILLAASLGTVSPLALAGHVHYSWLLGAITIAAMLWPSRKTAPQVA
>NZ_CP046603.1|WP_115842919.1|2816958_2817966_-|isocitrate-dehydrogenase
MTQTITVIRGDGIGPEIMDATLHVLDSMNLGLQYEFADAGLVALEKHGELLPQATLDSIRKNRIALKSPLTTPVGEGFSSINVELRKRFDLYANVRPAKSFPNTKSRFADGVDLITVRENTEGAYIGEGQTLSEDGETALLTQKVTRRGSERIVRYAFELARKTGRKKVTVVHKANILKSTSGLFLKTARAVAAEYPDIECNEMIVDNTCMQLVMRPEQFDIIVTTNLFGDIISDLCAGLVGGLGLAPGANIGTDAAIFEAVHGTAPDIAGQGKANPCALLLGAAQMLDHLGECEKAERLRAAIIATLEAKDSLTPDLGGTGNTMSFAKAIAGRI
>NZ_CP046603.1|WP_115842918.1|2818148_2818547_-|carboxymuconolactone-decarboxylase-family-protein
MSNETPDSGDRVAEFTAFRKRMNERILAEPNQVVRRFFALDTQTYQAGALDVKTKELLGLVASLVLRCDDCISYHVAQCKEAGVNRDEMFETFSVGLVVGGSIVIPHLRRAVDFLDRLEQGEAATPAGHDHG
>NZ_CP046603.1|WP_115842917.1|2818658_2819024_-|glutaredoxin-3
MAASQAHIRPQPHPRVHRRTVLTSSNVAPGADPAAKGPEIVIYTTLICPYCVAAKNFLKSKGQSWTEIRIDLDPAQREIMMARARRTSVPQIFIGETHVGGYDDMIALHRAGGLEPLLSPQ
>NZ_CP046603.1|WP_157030697.1|2819190_2820840_+|M48-family-metalloprotease
MRRIVLPVAALTIAVASLCAPAQESRLPDIGSSAGELLSPRQQQEYGAMMLAQLRHYDYLLEDPLIDSWLDTLGTRLAANSDQPKQPFTFFMLRERQINAFATLGGYIGVNSGLILAADKEDEVAGVLSHEIAHVTQQHVLRGAERAQRDQLPLLLAMLGAIVAAQAAGGNSSDDAAQAAMAGAMGLMQQRQINYTRANESEADRLGIQTLARSDYDPEAMADFFTIMQARSRSNGANYWGESPDWLMTHPVTITRITEAKDRAARIRRERGSSQVCVRDPDGPAQCEEESAPRPQFPTDGAVNPLLPPTLQANLGTAFGVGGTGRFDYARERLRVLSANTPGDAIREYERMGDPAKRTDAQRYGLAYAQLRANQPAAAATALNALLQKNPGDVWLTLALAEAESKSGKAASADARFETLLRQTPHSRPVVLSYADVLAERGNAQAGRRAQEILRPLLGVSANDAQFQSVFARACDMAGDPVRAGEAYAEAAYLNGRPEQALVQLNTLKRRSDLDYYARARIEARIAAITPTVLELKRQGIRDEDLRRK
>NZ_CP046603.1|WP_115842915.1|2820944_2821652_+|phosphate-regulon-transcriptional-regulatory-protein-PhoB
MQKRILIVEDEPAIRDMVSFALRKGEYEPVHAGDAREAQAAIADRVPDLILLDWMLPGTSGLDLARRWRKDQLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVLRRSREDDEDGSVAVGPLRIDGAAHRVFAHAAEGDQPVQIGPTEYRLLHFFMTHPERVYTRTQLLDHVWGGSVYVEERTVDVHIRRLRKTLEPHQLDGMVQTVRGAGYRFSASVEA
>NZ_CP046603.1|WP_157030698.1|2821788_2823117_+|phosphate-regulon-sensor-histidine-kinase-PhoR
MPPRSHSAWLRTLGQLALILVGAAVLGLAIGYPWPVITFAALGVVAWHYWRLRNVLLRLTARQRLKPPLGDGIWNELDRLLHRSQSEMRARKKRLIEMLRAYRAAAAAMPDAIVVVERNSQRIQWFNHSANSLLQLRYPRDIGAPLAQRLQPLQLSHWLASGRNAETLEIASPWNPAVTLSLRLIPYSDDLWMLVARDVSRLLQLEQMRRDFVANVSHELRTPLTVVHGYLDMLDPEEHPDWAPMLAEMQRQSQRMTQLVEDLLMLSRLESQDSLPAEETVAMAPMIATLRREANALSQGRHEVIVEDTAGVDLWGSNKELHSAFSNLVSNAVRYTPAGGTIRVRFRREDKGAVLEVIDSGYGIPAAHLPRITERFYRVSTSRSRESGGTGLGLSIVKHVLNLHQARLEITSEVGRGSTFSCHFGADRVRPRDEFALSEALP
>NZ_CP046603.1|WP_157030699.1|2823113_2825210_+|polyphosphate-kinase-1
MNAAAFDTATTVVDTDPLRDSELYFNRELSALDFNFRVLAQAQDPQVPLLERLRYLCISCTNLDEFFEIRAGTLRHAQDLGVPPGPDGLAPATVLAHIHERAADLVRSQYECWNDVLRPALDDAGVRVMHRDGWSEQQTQWLREYFRDEIMPVLSPLGLDPAHPFPKILNKSLNIVVVLKGKDAFGREGHLAIVRAPRSLPRIIQIPEDVSGGKHDFVFLSAVLSAFVDELFPGMQVKGAYQFRVTRNSELIVDEDEVENLALALRDELVGRGYLRAVRLEIAEQCPDDIVRTLLENFDLTENAVYRINGPVNLNRVIQVYDLVQRPDLKFVPFQPRQLSGVEAMFDKIAEGDVLLHHPFDAFTPVLELLKQASEDPNVLAIKQTLYRTGKESPIVDSLVQAARNGKDVTVVVELRARFDEEANLGLADRLQDAGVQVVYGVVGYKTHAKMMLIVRREGRKLRRYVHLGTGNYHSGTARVYTDFGLFTADADIGNDVHLIFQQLSGLAPTIKLKRLLQSPFTLHAGVLKRIDRETRHAKAGKPARIIAKMNALNEPQVVRALYMASQAGVQVDLIVRGACTLRPGLPGISENIRVRSIVGRFLEHHRVYWFANDGDPDLFCSSADWLERNLLRRIETGFPILAPELAQRVYEEALANYLADNCSAWTLQSDGSYVRLTPAPGDAPHSAQLSLLANVGA
>NZ_CP046603.1|WP_115842912.1|2825300_2826830_+|exopolyphosphatase
MSDAFPTSKLPLVDGDLLAAVDLGSNSFHMVVARYVLGQLRIVDRLRETVRMAEGLDRKGGLSPEVRQRALECLARFGQRIRDIPPQRVRAIATNTVRRLAVPQAFLMPAETALGHAIEVVAGREEARLIYLGVAHAQPARPGELRLVIDIGGGSTECIIGSGFEAIERESLQLGCIATTRRFFENGKLSRKKWKEALTEVTAEFQQFAGTYRALGWNEALGASGTNKAIGDICAAMKLTKGAVTAEALPVLRDRLLQADRIEAIDLPGLSSDRRPVIAGGVLILEAAFDALGLKRMAVSKAAMREGVLYDMLGRGGADDPRDASVAALMQRYGIDDGQAQRVVGTALRLFEQVAQAWSLDADDSLMLQRAARLHELGLAIAHSQYHVHGAYIVEHSDIAGFSRQQQQFLAALVRTHRRSIPKSAFDALPDRLLTSARRLAALLRLAVLLHRAHEGDPIPQLDAKAEGNTLTVCVSRRWLDARPLVRADLEGEPEDIAGLGIALKLEFV

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Crispr_ID: NZ_CP046603_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046603_6

2955857-2955930

Orphan

Consensus_repeat	Method
GCCAAGAAGACCGGCGCCCGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046603_6

>merge|NZ_CP046603|6|2955857-2955930|CRISPRCasFinder
GCCAAGAAGACCGGCGCCCGCAAAACGGCGAAGAAAGCGACCAAGAAGGCCGCGAAGAAGACCGGCGCCCGCAA

>NZ_CP046603|6|6|2955857-2955930|CRISPRCasFinder
GCCAAGAAGACCGGCGCCCGCAA	AACGGCGAAGAAAGCGACCAAGAAGGCC
GCGAAGAAGACCGGCGCCCGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046603.1\|WP_157030781.1\|2962746_2962983_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197670
NZ_CP046603.1\|WP_157030771.1\|2944225_2945374_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP046603.1\|WP_157030772.1\|2945406_2948487_-\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|223911
NZ_CP046603.1\|WP_157031730.1\|2952007_2952868_-\|YihY-family-inner-membrane-protein	unknown	unknown	gnl\|CDD\|377085
NZ_CP046603.1\|WP_157030779.1\|2959440_2960340_-\|DUF2785-domain-containing-protein	unknown	unknown	gnl\|CDD\|371322
NZ_CP046603.1\|WP_157031732.1\|2956316_2957342_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|238194
NZ_CP046603.1\|WP_157030774.1\|2953100_2953706_+\|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl\|CDD\|234840
NZ_CP046603.1\|WP_157030775.1\|2953760_2953970_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_115844834.1\|2958565_2958859_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_157030777.1\|2955038_2955404_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP046603.1\|WP_157030776.1\|2954106_2955042_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379374
NZ_CP046603.1\|WP_115844851.1\|2949688_2950585_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP046603.1\|WP_157030780.1\|2960509_2962750_+\|FdhF/YdeP-family-oxidoreductase	unknown	unknown	gnl\|CDD\|273765
NZ_CP046603.1\|WP_115844836.1\|2957866_2958451_-\|spermidine-N1-acetyltransferase	unknown	unknown	gnl\|CDD\|237916
NZ_CP046603.1\|WP_157030784.1\|2965844_2967659_+\|DUF885-family-protein	unknown	unknown	gnl\|CDD\|377577
NZ_CP046603.1\|WP_157030770.1\|2943873_2944089_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_157030773.1\|2950587_2951673_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP046603.1\|WP_157030783.1\|2963729_2965658_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224423
NZ_CP046603.1\|WP_157030782.1\|2962979_2963777_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|234823
NZ_CP046603.1\|WP_157030778.1\|2958886_2959345_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184886

Protein	Function_ID	Function_description	E-value
NZ_CP046603.1\|WP_157030781.1\|2962746_2962983_+\|hypothetical-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	0.000383563
NZ_CP046603.1\|WP_157030771.1\|2944225_2945374_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	3.75543e-52
NZ_CP046603.1\|WP_157030772.1\|2945406_2948487_-\|MMPL-family-transporter	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP046603.1\|WP_157031730.1\|2952007_2952868_-\|YihY-family-inner-membrane-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	1.08682e-37
NZ_CP046603.1\|WP_157030779.1\|2959440_2960340_-\|DUF2785-domain-containing-protein	gnl\|CDD\|371322	pfam10978, DUF2785, Protein of unknown function (DUF2785). Some members in this family are annotated as hypothetical membrane spanning proteins however this cannot be confirmed. The family has no known function.	4.59835e-38
NZ_CP046603.1\|WP_157031732.1\|2956316_2957342_+\|peptidylprolyl-isomerase	gnl\|CDD\|238194	cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. .	2.40431e-27
NZ_CP046603.1\|WP_157030774.1\|2953100_2953706_+\|DNA-3-methyladenine-glycosylase	gnl\|CDD\|234840	PRK00802, PRK00802, DNA-3-methyladenine glycosylase.	1.47631e-87
NZ_CP046603.1\|WP_157030784.1\|2965844_2967659_+\|DUF885-family-protein	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	5.6556e-115
NZ_CP046603.1\|WP_157030777.1\|2955038_2955404_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	4.49029e-23
NZ_CP046603.1\|WP_157030776.1\|2954106_2955042_-\|hypothetical-protein	gnl\|CDD\|379374	pfam13796, Sensor, Putative sensor. This family is often found at the N-terminus of proteins containing pfam07730 and pfam02518. The N-termini of proteins containing these two domains often function in stimulus sensing.	2.3932e-30
NZ_CP046603.1\|WP_115844851.1\|2949688_2950585_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	2.59807e-54
NZ_CP046603.1\|WP_157030780.1\|2960509_2962750_+\|FdhF/YdeP-family-oxidoreductase	gnl\|CDD\|273765	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c., oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.	0
NZ_CP046603.1\|WP_115844836.1\|2957866_2958451_-\|spermidine-N1-acetyltransferase	gnl\|CDD\|237916	PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional.	5.87818e-84
NZ_CP046603.1\|WP_157030773.1\|2950587_2951673_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	5.45172e-49
NZ_CP046603.1\|WP_157030783.1\|2963729_2965658_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	3.8228e-69
NZ_CP046603.1\|WP_157030782.1\|2962979_2963777_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	gnl\|CDD\|234823	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD.	1.59075e-108
NZ_CP046603.1\|WP_157030778.1\|2958886_2959345_-\|hypothetical-protein	gnl\|CDD\|184886	PRK14892, PRK14892, putative transcription elongation factor Elf1; Provisional.	0.00214614

>NZ_CP046603.1|WP_157030777.1|2955038_2955404_-|PadR-family-transcriptional-regulator
MIELDTQLRKFQKELSAGTVSLALLAVLGSAPDPLYGYQIAKQLERIGGGVLAGKQSALYPVLRNLEGAGLLDSHVEPSMTGPPRRYYRITDAGRTVLHEWAAAWRATRDSVDSVLGGLEP
>NZ_CP046603.1|WP_157030776.1|2954106_2955042_-|hypothetical-protein
MNAFEASSVRPGGLPTTIPEYLEHLRRSLAGADPALVQDALYDAEEYLRSELAENPGRSEADVIVAVAGSYGAPDEVADIYRDTEVKVQTALRPPAPKPRRSWMGQFFGVIAEPRTYGALFYMLLSLATGIFYFTWVVTGLSLSAGLAVLIIGVPFVILYFGSIRVLSLVEGRIVEAMLGERMPRRPLYSSRGQPLLKRIGELFTDPRIWATQLYFLFMLPLGIVYFTVVVTCLSVSLALIAAPIGLVLGHADVLSLDPWNINSNDQPWLWPIAMLVGVLLLFVTLHIARGVGYLHALLAKHMLVKTAQYD
>NZ_CP046603.1|WP_157030775.1|2953760_2953970_-|hypothetical-protein
MRRFRIFALAALVGLSSFTASASWQGTWLYYDDEGVLVGSWTAGCRELDGRWGVETDNKVFVQGCRASS
>NZ_CP046603.1|WP_157030774.1|2953100_2953706_+|DNA-3-methyladenine-glycosylase
MPIKPLPRRFYAHDSRDVAPLLLNKVIVTADGRVGRIVEVEAYRGGEDPAAHSFRGPTKRTQVMFGPPGHLYVYFIYGMHWAINAVCGGPAGHAVLIRALSPMEGIDRMRRARGMEDVRLLASGPGRLAQAMGLSGVHNGVDITDRKSPVWFGDDGTPPPDSPVASPRIGISKATDLHWRWHVAADPHVSKGGKPKVRKKA
>NZ_CP046603.1|WP_157031730.1|2952007_2952868_-|YihY-family-inner-membrane-protein
MKALVRRAQGSLPADLVRRFVDTELMAQAAALALYAMLSLAPLLLILVWLTSALLPGAQESLMQQIGLLAGGEAERVARTVVDNARDRPDTGSIAGWWSVALLFIGATAVFAQLQDVLNKIFRTDATRLAGAMAWLRKRVFSMGLVLAMGFLLLVSMTVSTLVQLAFSRMEWALPIVMNVATWLVYAISFALMYHYLPDRSVGWKRALGGGAITALLFVLGRWLIGWYLRESNPGSAYGSMGALVLALVWMYYAALIVFIGALITAVIDERRKQKRDGVAAAKRDG
>NZ_CP046603.1|WP_157030773.1|2950587_2951673_-|sensor-histidine-kinase
MAITATHPLDLPRQHLFWIFHSAGWLGYFGQSWLSAIAYGKPSGYWIVPFTAACTGFVVTLGLRYLLRACWGLSPRKLLMTMIVPILASSAVMDLTTRTMLVRFCDTCAPTSRMAYIAYSLTYIYVVLAWVGLYLGIKYYRQLQDETQRALAARTMAHQAQLKMLRYQLNPHFLFNTLNAISTLVLDRDNATANRMVQGLSSFLRHSLDNDPMQRVTLRQELDALTLYLDIEKIRFAERLRIETDIDEDCWRALLPSLLMQPLVENAIKYAVAKQVAGGLLRIEAERDGDQLVLRVIDDGPGCSSLEGNQLPPGKGVGLRNTRERLNVLYGEESSFSVRNRERGIEVELRLPFETKQLGGD
>NZ_CP046603.1|WP_115844851.1|2949688_2950585_-|response-regulator-transcription-factor
MDRAVDSRVVERERQSESATHGTRLRALIVDDEPLARRGLEIRLEAHPDVEIVGEYGDGLSAIAGMREHRPDLVFLDVQMPGMDGFETLRSIPAHEMPLVVFVTAYDHYAIRAFEASATDYLLKPVEEGRLAQALARVQQARSQREASGHCAHLLGLLGELSGRPLLDLDEALKPDALEQLRRDDKLAVRDGGRTVRVDLSSIRWIDAAGDYMCIHTDGPADRAAPQGETLVLRATMRDLEKQLDPQRFPRIHRSTIVNARRVVELRPHTNGEGFLRLDCGQELKLSRTHRDKLALLI
>NZ_CP046603.1|WP_157030772.1|2945406_2948487_-|MMPL-family-transporter
MKLTEASLRNPAAVAVAVAMVCAFGLLCLLKLPLQLFPDIERPQMSIQTSWRAASPQEMESEIVEPIEAVMQGLPGLAEIESNINAGNSFINLTFAVGSDMDATLVEVLSRMNRLQPLPRDATPPVVQAGADNANNSLTYFFVQQLPGTPGDILDQRQMIEDRIVPRLSAVEGVAGVEINGGAPEELTITMNLERAAALGIQIPQIADVAARATDVSGGVVEAGRREYVLRFAGRYSPEALGNLILAWRDGRPVRLGDVANVEVKRPEQRFFAYQNGNPAIGLRILRESGANVLDTLDRVKAVVEEVRAKELAPLGLDIRQSFDASVFINRAIGLLSGSLGAGVLLAVGCLWWFLRDVRATALIACAIPISLLATFIVLKLTGRSLNVISLAGLAFAVGMVMDAAVVVAENIVRLREEGVPAKQAALDGTRQVGGALVASTLTTIAVFLPVIFMEDVEGQLFADLALTISIAVGISLLIAVTVLPAAASSWLRTREDVHEQKQHRFWIGVSDWAMRATSSRRNQLAWVGALVVAPIVLTVVLMPKIDYLPPVKRAAVDAIFNFPPGMSPERVNAEIAPTLLARMKPYMDGEKAPQLSNWYLNLWPGGGTVGARVVDPDDIGELERIVRDEVAVGFPDTRAFASEGELFGSFGGSARAIAIHLQHADGDALTRAAETGRKLLSEKFAGANVQAWPNADAGTPELRINPDDRRLAEVGWRRPDLATVVRALGDGQWLGEYFDGDRRLAIILRSDREDDVERLGAAPLATPNGGALTLAELAQVDTVLAPNQMRRVDRRRTVTLTVDPPPAMSLEEALGIVEGDVVPVLRDALPQDAAIRVSGSADRLGEVVRSMGTNFAMALVVLFLLMAAMFRSLRDSAYVMATLPMAVLGGVIGLRVLDLIAGQTLDLLSMIGFIMLLGMVINNAILLVAQAREGQAAGATLDEALKQALDQRLRPILIGALTGVLGALPMAINPGPGAVIYRGLAAVSVGGVALSLVFIVVLVPALLRLAESRRERIEAGAPALA
>NZ_CP046603.1|WP_157030771.1|2944225_2945374_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKFKSRKPSSRLPGRIILVLALVPVLLVPLIRWEVEATPPAKPATPPAVVGVANAVTTELAPMHWAPGSVISRRDAKVASEQDGRVVRVAEVGQKVRAGEPLAVLDDSTLALQQQQGEADVARIRAQLDMAARQEQRYAQLAAQQNIARAQYEQTRADRDMLAQDLARAQALLAQTRLRRTQMVVRAPFDGVVAERSVQLGEYVGIGDPVARLVDTGAQEVRVRAPVDLAQHLAVGMPVEVSVGKRGTAEKSGTRTHPVSALVPVGDEASRQLELRIAMEDGELPVGTAVDVGMPDSGRRSVVAVPRDALILRRDGDYVLRVASNSTAERLPVKTGTEVDGLVEVQGAVKPGDRLIVRGGERIEAGQAVTIQQDLSRATAAR
>NZ_CP046603.1|WP_157030770.1|2943873_2944089_-|hypothetical-protein
MILLLRLQSPLPLLLLVIPAKAGRFWAAEWRHHPWTFHALAVARQSKEESPAKLPIACGARVTFLCSHKEK
>NZ_CP046603.1|WP_157031732.1|2956316_2957342_+|peptidylprolyl-isomerase
MASKPGARRWRPALLVALLAVLPVAQVAAEDAVPGKPRSMQEILDASQPTDWRTPDNKNLLYLDLDSGRVLIELAPAFAPAHVANIRALAKNGYWNGMSINRSQDNFVVQWGDPAQEEKDRKPLGRGAKAKLPAEFARKTKGLPFDKLPDVDGWAPEVGFSSGFPAGRDPGADAAWMAHCYGTVGAGRDMAADSSNGTELYVVIGQSPRQLDRNITVVGRVLQGMELLSVLPRGTGPLGFYEQPSQRTPIKSIRLASEVPKKERVGIEVLRTDTPLFAELVEARRNRRDEWYKHMAGHIDLCNVPLPTRAPPPKPVAEKAKAKPRAKKPRSGAKPAGATKS
>NZ_CP046603.1|WP_115844836.1|2957866_2958451_-|spermidine-N1-acetyltransferase
MNAKLPVPGVTLRPLERGDLHFVHVLNNNRSVMGYWFEEPYESFVELEELYRKHIHDQSERRFIVEDTAHERVGLVELVEIDHLHRRAEFLIMISPDQQGRGYARAATRLAINYAFRVLNLYKLYLLVDVDNTRAIRIYEDAGFRREGVLVDEFFSDGRYHDVVRMCLFQRDVLREDAGRREAGVGVEERTAPP
>NZ_CP046603.1|WP_115844834.1|2958565_2958859_+|hypothetical-protein
MPLMRLRVTGSDDDVRAIANLLTSLDGIEHIEEVDDLMPHMDDDDSSSAGLPDDQGPGQHALEIDAPNQATANRVRDAVEALAFDLDVLVEFDNDEG
>NZ_CP046603.1|WP_157030778.1|2958886_2959345_-|hypothetical-protein
MRHTQPRETCPRCGANVRTLQLAGKPVRHHQCTGCGYRYENVPEGYDEQGKLDGLAGIDALPEDDRDAMEGMIFLILGAGTMMGGIELTSRSIAELVAEHGAPESVLRNFAWPAHQWLLKRVKRFTSHLVAIDQGQWRVCFTVRRLSPVALG
>NZ_CP046603.1|WP_157030779.1|2959440_2960340_-|DUF2785-domain-containing-protein
MRLSLRLLALLFTLGLAAPALAAPACPPEGWPLERLEALRQSGFVVADPGERATLAYALSNCLAASDPQLRDELAYEALSTWMRKGELAPDTLRALRDRFYAMLGEPDPDGVAWPFAALALSEVARTDRISPWMTPAERTAMVLRAVTYLESVRDYRGFEPGEGWRHGVAHGADWLMQLTLNPSLDAPQLHRIVDAVAAQVVPATGVAYVFGEPQRLAAPIVYAAQRGVRDEAGWTAWFAALVPRLGDPSQAWKDPAWLARRHDLVAFLQAVYVEANQSTDKRTRTVIPGVVAALKALP
>NZ_CP046603.1|WP_157030780.1|2960509_2962750_+|FdhF/YdeP-family-oxidoreductase
MSDKKSIELYVKPAGGWDALRSSWQALRDQQVVMKGASTLLRANQPSGFDCPGCAWPDRNVHSTFEFCENGVKAVANEATSRRVTPGFFAQHTVAWLNEQDDRFLEAQGRLTEPMAYDAASDTYRPIAWSEAFATIARALNSLASPNEAIFYTSGRTSNEAAFLYQLFVREYGTNNLPDCSNMCHEASGVALTEQLGSGKGSVTLEDFEHAQAIFIFGQNPGTNHPRMLGELRSAAKRGCRIVAFNPLRERGLERFADPKAPAEMLGASTRIASEYYQPRIGGDLAVATALCKVVIESGAVDHTFVARHTHGYDDFADSVRATPWAELERESGLSRADLEQAGRTYLDSNATIVCWGMGITQHARSVATIQMLGNLLLLRGNIGKAGAGPCPVRGHSNVQGDRTMGIYEQPSPAFLDRLGAAFDFQPPREHGYDTVAAIEAMFDRRAKVFFAMGGNFAAATPDTAHTHEALRRCELTVHVSTKLNRSHLVHGRDALILPCLGRTEIDVQASGPQAVTVEDSMSMVHLSSGMNPPASEHLMSEPAIVAHLAAATLPRSRTPWLALIEDYDRIRDRVAQVVDGFADFNARVRTDGGFHLHHPGRERVFPTRRGKAGFYAHALDDRKPQADVLQLMTVRSHDQYNTTVYGMDDRYRGVHGLRRVVFISRDDLERLQLRDGEHVDIASVWHDGERIVRDFRLVEYDIPPGCLAAYFPETNPLVPLDHHAERARTPASKSIPVRLLRRSAA
>NZ_CP046603.1|WP_157030781.1|2962746_2962983_+|hypothetical-protein
MSEESALAVLRLLREEDGQSIHRVAKRLQLGLSELQRVLAALGDDPRFDGLDLVERRQDGERTLLWLTEKGRSLVESA
>NZ_CP046603.1|WP_157030782.1|2962979_2963777_+|formate-dehydrogenase-accessory-sulfurtransferase-FdhD
MNGPLQPVQALRLRAGDRAPHDDRVIVEAPVALLYNGESFAVMMATPDSLEDFALGFALGEGIVGDASEFRLVDVVRHDEGVALHAAIPQARFDALAERRRGMEGRSGCGLCGVESLQAALRPVPRVTSSTRVDVGSIRAALDALAAQQPLNALSGGVHAAGFAHEGGLLVREDVGRHNALDKLIGAMARNVIAPDSGFVVITSRASYEIVHKAATAGIGLVVAISAPTDLAIRTADAAGVTLAAFARGDSLNLYSHPGRVAAAG
>NZ_CP046603.1|WP_157030783.1|2963729_2965658_-|alpha/beta-fold-hydrolase
MKRWMMAAGLALAAWTADAQKAPPLEDFLRKPEFESMTISPGGDYLAARIPFDDRTLLAILRVSDMKVTAKLDPGRDGFIEAEQWISSTRVLASASMKFGTLAQPYQLPNLHPLDVDGRSGAAFGAYLIDPLPDDPDYVLTAYCYKVQKNECLTRVRRMRKDGLGKREDLVDGPVPDSSFLADRAGTVRFAWARDNDDRQQAFLLRGEKWDPINDEAASGVEVTPIGTSFDRRYGFLRSERKQGPDVIERIDLATGERTIVASDANASPQALVWSFDGHEPIGAVYGGVQPEVRFFDDKHPHAALTRDLVTAFPGEFARVTSASRDGRRAVVTVTSPVEPPRFYLLDTASGDLKLLARSRPWLSARSMRPVQAFEFKARDGLSLRGWLTTPAGNGPHPLVVMPHGGPFDVSDSWAFSEDVQMLATRGYAVLRVNFRGSGGRGRDFVEAGYRQWGRAMQDDVTDATRWAIEHAGIDASRICMWGESYGGYAALMGAVREPALYRCVVGMAGPYDLPTMFRWGDTHRSKWGRAYLTRALGDDMARLREDSPTANVGKIRADVMLVQGMRDYRVSPEHLRILRKALDDGGVRYEGYFPSDETHGFFDEKSRLKYYDSVLRFLNRNIAPARSAGSGDTAGVAVKVE
>NZ_CP046603.1|WP_157030784.1|2965844_2967659_+|DUF885-family-protein
MRPTLLAVAVLSAGLAACQPQTTPAPADTKATAAAPASDAATDARLAEVSQQWLDGWLRLNPVSATQIGKHDFDSEVDDLSAAGRQAQVDFAKKTLAALDGIDTTKLSRENQIDAAILRNQVQGDIWNVETLQSWAWDPQVYSGLAGGAIYNLMAREFAPMPQRLKSATARMQKIPNIYAQMRENLDPARVPKIHAETVARQNAGILSLIDTFITPNADQLQGEDRKQLDEAVTNLRKAVAEQQTWLDKTLVPNAKGDFRIGQKLYDEKLQFSLNSSLSRAEIKQRAEGELKRVRGEMYAIAQTVLKDKPNAPEMPANPSPEQQQKAIEAALELAYADKPARDQVVDFAKKTLEQATDFTRKHDLVTVPNDPVKIILMPEFQRGVAVAYCDSPGPLDKGLDTYYAISPIPDDWDAKQVDSFLREYNSRMIHLLSIHEAMPGHYLEGAHSVKSHSTLRSVLRSGLFAEGWAVYTEDMMADAGYLDNDPLFRLVQLKFYLRTIANAILDQGVHVDNWTQEQAMELMTKQAFQQEREAAGKWVRAQLTSAQLPTYFVGAQEHFDMRKAVEAKLGDKFNAKAYHDQVLSYGAPPVRYVREMMLDEPIQ

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Crispr_ID: NZ_CP046603_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046603_7

2989110-2989323

Unclear

Consensus_repeat	Method
TGGGTCCCGGCGTTCGCCGGGATGACG	CRISPRCasFinder

3 spacers

cas3

The CRISPR arrays of NZ_CP046603_7

>merge|NZ_CP046603|7|2989110-2989323|CRISPRCasFinder
TGGATTCCCGCCTTCGCGGGAATGACGAGCAAGAGCAAGAGCAACGGCAAGATGGATTCCAGCTTTCGCTGGAATGACGGAGAGGTGGGGAACCGCCATCGCAGTGCCCGGATGATACGGTCCTGGGTCCCGGCGTTCGCCGGGATGACGGTGAGGTGCGGAAACGTCGAGAGGAACGATAGGGGCTTGGGTCCCGGCCTTCGCCGGGATGACG

>NZ_CP046603|7|7|2989110-2989323|CRISPRCasFinder
TGGATTCCCGCCTTCGCGGGAATGACG	AGCAAGAGCAAGAGCAACGGCAAGA
TGGATTCCAGCTTTCGCTGGAATGACG	GAGAGGTGGGGAACCGCCATCGCAGTGCCCGGATGATACGGTCC
TGGGTCCCGGCGTTCGCCGGGATGACG	GTGAGGTGCGGAAACGTCGAGAGGAACGATAGGGGCT
TGGGTCCCGGCCTTCGCCGGGATGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046603.1\|WP_157030796.1\|2977654_2978188_+\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|176860
NZ_CP046603.1\|WP_157030802.1\|2986822_2987665_+\|GspB-domain-containing-protein	unknown	unknown	gnl\|CDD\|339769
NZ_CP046603.1\|WP_115842373.1\|2996863_2998990_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP046603.1\|WP_157030803.1\|2987787_2988183_+\|DoxX-family-membrane-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP046603.1\|WP_157030806.1\|2990868_2991462_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_157030811.1\|2993765_2994374_+\|methyltransferase	unknown	unknown	gnl\|CDD\|369778
NZ_CP046603.1\|WP_157030799.1\|2981369_2981702_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|377438
NZ_CP046603.1\|WP_157030805.1\|2989372_2990779_-\|ATP-dependent-RNA-helicase-DbpA	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236977
NZ_CP046603.1\|WP_157031733.1\|2978544_2979873_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|227277
NZ_CP046603.1\|WP_157030809.1\|2991989_2993135_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_157030813.1\|2995802_2996105_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226331
NZ_CP046603.1\|WP_157030808.1\|2991764_2991989_+\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|379097
NZ_CP046603.1\|WP_157030812.1\|2994482_2995748_+\|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl\|CDD\|226926
NZ_CP046603.1\|WP_157030807.1\|2991458_2991728_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198403
NZ_CP046603.1\|WP_157030798.1\|2980278_2980869_-\|polyisoprenoid-binding-protein	unknown	unknown	gnl\|CDD\|225228
NZ_CP046603.1\|WP_157030801.1\|2985516_2986818_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|132060
NZ_CP046603.1\|WP_157030800.1\|2981878_2984326_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP046603.1\|WP_157030797.1\|2979841_2980210_-\|DUF1428-family-protein	unknown	unknown	gnl\|CDD\|377795
NZ_CP046603.1\|WP_115844781.1\|2984508_2985438_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP046603.1\|WP_157030810.1\|2993213_2993663_-\|CopD-family-protein	unknown	unknown	gnl\|CDD\|224892

Protein	Function_ID	Function_description	E-value
NZ_CP046603.1\|WP_157030796.1\|2977654_2978188_+\|polyketide-cyclase	gnl\|CDD\|176860	cd07818, SRPBCC_1, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	9.34036e-72
NZ_CP046603.1\|WP_157030802.1\|2986822_2987665_+\|GspB-domain-containing-protein	gnl\|CDD\|339769	pfam16537, T2SSB, Type II secretion system protein B. This is the B protein from some operons of bacterial secretion systems of type II. The exact function of the B protein is not known, though in the case of Vibrio cholerae there is a fusion protein between proteins A and B that includes an AAA domain, a PG_binding domains well as this domain at the C-terminus. Many of the other species have no A or B domain genes in this operon. The type II secretion pathway is conserved in Gram-negative bacteria that are prevalent in bacterial pathogens of plants (Pseudomonas fluorescens, Erwinia or Xanthomonas species), animals (Aeromonas hydrophila) and humans (Klebsiella oxytoca, Pseudomonas aeruginosa, Vibrio cholerae or Legionella pneumophila). Typical type II secretion systems (T2SSs) are encoded by a set of 12 to 16 gsp (general secretion pathway) genes organized into large operons including the conserved 'core' genes denoted C to O and in some bacterial species, as indicated above, extra gsp genes such as gspAB, gspN or gspS. A different nomenclature is used for Pseudomonas T2SSs, so the B gene is referred to as the P protein.	7.88475e-15
NZ_CP046603.1\|WP_157030803.1\|2987787_2988183_+\|DoxX-family-membrane-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	8.29123e-14
NZ_CP046603.1\|WP_157030811.1\|2993765_2994374_+\|methyltransferase	gnl\|CDD\|369778	pfam08242, Methyltransf_12, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.08508e-08
NZ_CP046603.1\|WP_157030799.1\|2981369_2981702_-\|transcriptional-regulator	gnl\|CDD\|377438	pfam04993, TfoX_N, TfoX N-terminal domain. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes. This family corresponds to the N-terminal presumed domain of TfoX. The domain is found as an isolated domain in some proteins suggesting this is an autonomous domain.	9.0769e-32
NZ_CP046603.1\|WP_157030805.1\|2989372_2990779_-\|ATP-dependent-RNA-helicase-DbpA	gnl\|CDD\|236977	PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional.	0
NZ_CP046603.1\|WP_157031733.1\|2978544_2979873_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|227277	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription].	8.14749e-163
NZ_CP046603.1\|WP_115842373.1\|2996863_2998990_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.89414e-103
NZ_CP046603.1\|WP_157030813.1\|2995802_2996105_+\|hypothetical-protein	gnl\|CDD\|226331	COG3809, COG3809, Uncharacterized protein conserved in bacteria [Function unknown].	1.00995e-25
NZ_CP046603.1\|WP_157030808.1\|2991764_2991989_+\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|379097	pfam13275, S4_2, S4 domain. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4.	1.1484e-22
NZ_CP046603.1\|WP_157030812.1\|2994482_2995748_+\|polyhydroxyalkanoate-depolymerase	gnl\|CDD\|226926	COG4553, DepA, Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism].	0
NZ_CP046603.1\|WP_157030807.1\|2991458_2991728_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198403	cd10456, GIY-YIG_UPF0213, The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1. This family contains a group of uncharacterized proteins found mainly in bacteria and several in dsDNA viruses. Although their function roles have not been recognized, these proteins show significant sequence similarities with the N-terminal GIY-YIG endonuclease domain of structure-specific endonuclease subunit SLX1, which binds another structure-specific endonuclease subunit SLX4 to form an active heterodimeric SLX1-SLX4 complex. This complex functions as a 5' flap endonuclease in yeast, and has also been identified as a Holliday junction resolvase in human.	2.65523e-37
NZ_CP046603.1\|WP_157030798.1\|2980278_2980869_-\|polyisoprenoid-binding-protein	gnl\|CDD\|225228	COG2353, COG2353, Uncharacterized conserved protein [Function unknown].	8.33937e-48
NZ_CP046603.1\|WP_157030801.1\|2985516_2986818_+\|AAA-family-ATPase	gnl\|CDD\|132060	TIGR03015, pepcterm_ATPase, putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. [Protein fate, Protein and peptide secretion and trafficking].	3.96207e-82
NZ_CP046603.1\|WP_157030800.1\|2981878_2984326_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	5.73886e-53
NZ_CP046603.1\|WP_157030797.1\|2979841_2980210_-\|DUF1428-family-protein	gnl\|CDD\|377795	pfam07237, DUF1428, Protein of unknown function (DUF1428). This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown. The structure of this family shows it to be part of the Dimeric-alpha-beta-barrel superfamily. Many members are annotated as being RNA signal recognition particle 4.5S RNA, but this could not be verified.	3.49417e-53
NZ_CP046603.1\|WP_115844781.1\|2984508_2985438_+\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.7068e-07
NZ_CP046603.1\|WP_157030810.1\|2993213_2993663_-\|CopD-family-protein	gnl\|CDD\|224892	COG1981, COG1981, Predicted membrane protein [Function unknown].	9.35994e-45

>NZ_CP046603.1|WP_157030803.1|2987787_2988183_+|DoxX-family-membrane-protein
MNGSTQQDAGKLILRIALGVLVFLHGLSKLEGGLDGIVGLVETQGFPGFFAYGVIIGEVIAPLLVIAGFFSRIGAILIVINMLFALYLVHLGDIGHLNQQGGWAIELQVMFLATAAAIALLGPGKWAFNQR
>NZ_CP046603.1|WP_157030802.1|2986822_2987665_+|GspB-domain-containing-protein
MSLILDALRKSEAQRRRGEMPDLRAELPPVARNVAPRRRWPFWFAGIAVLIAIVALGWGFWNRTPDAPRAVEAVAIPADAPPPSDTAELPVEPAVVDAPPAASPLPKSKPLPGAEPEPTQPVEDDVYAAASAAYPTPTAQTPTAPTPTDAAPPVQAPATQAPAPARQNERYQQAVANAATASAPRSPAATPVPVAPLPAPPPATGAPVRLSDLSPGEREQLPALKISMHMFGPTPSQRFAIIDGARVGQGDRVGEAVVEEIAADGVVLNWHGRRVALPLR
>NZ_CP046603.1|WP_157030801.1|2985516_2986818_+|AAA-family-ATPase
MYLEHYGLIEPPFSITPDPRFVFLSERHRDALAHLLFGITQGGGGGFVQLTGEVGTGKTTLCRLLLEQVPENTRVALVLNPRVTPVELLESICEELHIDLEGRRGSTKALVDALNAYLLDAYAQGLRVVLVIDEAQNLSVEALEQVRLLTNLETPTQKLLQIVLLAQPELRAMLAREDMRQLAQRITARFHLTPLDASETGEYLRHRYRVAGGTRFPFDASAVKRIHVHSGGVPRLINVIAERSLLAGFAHDVPMLDARWVDRAAAEVLPARVRRTRRWLFAVPVAALLLASMGMAAWWWPRAPVQAKPATTPVAPTKPVVVTKPAVVSPVAKPDVAQLDAEAFAAALRDAPLKPGASGAVVEWISRRLHPAYLTTSGAPAVFDAAMQEAVRRFQRDAGLAADGVVGPATLMALAAHGAPVRTAALESDTGAQ
>NZ_CP046603.1|WP_115844781.1|2984508_2985438_+|DMT-family-transporter
MTPTRKAHLQIHFCVLLWGFTAILGKLITLPALPLVWWRMLLVVAALALVPRVWRGLRAMSGRTMLAYAGIGALVALHWLTFYGAIKLSNASVGATCMALGTVFVAMIEPWLTRTRFSKRELALGLMVLPGVAMVVGGVPAGMRAGIAVGAVSALLVAIFGSLNKRMVEHGDPLTVTALELGAGVLTLSLLAPLMPLVFPAFAGPLLVTPSAHDAWLLLGLALACTLLPFSLSLVALRHMSAFAQQLAVNLEPVYAIVLAALLLGEQRELTTLFYVGVVIILAAVFIHPLLGRPHRVDPELLGTAEAKS
>NZ_CP046603.1|WP_157030800.1|2981878_2984326_-|TonB-dependent-receptor
MSQHRSRLFTAVTTALWLGGGLLVSAAAAAQQAPPVTGEPQTPAEERAEDARAKTLDTVSVLGSRRIQRSSDTASMSPVDVLPMDQAVEEGAQFDLAQTLQYASPSFTSTRQTGADGADLIDGAALRGLGSDQTLVLVNGKRRHTVSLVNIYGARNRGNTGTDLNSLPLMAIDAVEVLRDGAAAQYGSDAIAGVMNISLKRSKGCEAVAGYGEYTRGDGENWLATAYCGAELATGGMFAVTGEWQDRGRSDRSVPKGSPRIIGDSEVTNRTVYLNGDSPLGEAAEVYFTAGMQSRDASSAAFAREGIGSEDIPSRNSAAMYPDGFVPFIDGVLEDRYGILGLRGDVSQWHWDLSHTYGYNELRYTINGTLNASLANLDLLNGGAGISPTSFDAGGFSFQQKTSNFDVSRYFDSALAGVNVAFGLEQREERYRIREGEEGSYLDYDGAGEGGNPGSQGFPGFQPGDVTDKSRDSTAGYVDVEVNFTDRFMMDYAVRYEDYSDFGSTLDGKIAAGFRATDTVMLRGSVSTGFRAPSLQQKYFSSTITDFISGEPVDVVIASNDSELAALAGVPNLTEETSESATLGLTWTPRDNVSLTLDLYRIDIDDRVVLSGDFDTSDPAIGPILEAMDVGLARFFFNAVDTKTEGADLTVTYDFDWADAKWSTYLGANWNKTEVTRVNTPPALAGREDTLLPERDRLFIENGAPRSKAVLGVDYTRGSWSASAKGIYFGEQELGTFSGTEAGVPNQHYASKASADVSVTYAFAENTKLTVGGSNVFDTFPTKQNPDETDNGHIYESVQFGLNGAAWYVRLWHKF
>NZ_CP046603.1|WP_157030799.1|2981369_2981702_-|transcriptional-regulator
MTNAFLAHVHDLLDPLGAVSTRAMFGGHGVYLEGELIGVVMGEALYLKVDTETRLHFEAAGCEPYVYLGQAEPITLSYWSVPESAMDSAEAMRPWAELARAAAHRAGRGR
>NZ_CP046603.1|WP_157030798.1|2980278_2980869_-|polyisoprenoid-binding-protein
MSTRKPFPQLLLAAALSLSAAATVAAPAVYEIDPAHTFPSFEADHMGISVWRGKFDRSSGEITLDREKQTGSVNVVIDTASVDYGLDAMNTEARKDTLLDTTKFPQATYKGTLADFRDGAPTRVKGELTLHGVTRPVDLTIRRFKCIPHPLNKRELCGADAYGDFQRDAFGIDAGKDYGFDMTVSLRIQVEATRKP
>NZ_CP046603.1|WP_157030797.1|2979841_2980210_-|DUF1428-family-protein
MAFYVDGFVLPVPRDKVDDYKKLARMAGKIWLEYGALEYHECLADDVQPGKVTSFPQAVKLKPDEVVVFSWIVYKSRRQRDKINAQVMKDPRLAGMDPKSLPFDGKRMFWGGFKPIVSMTAE
>NZ_CP046603.1|WP_157031733.1|2978544_2979873_+|sigma-70-family-RNA-polymerase-sigma-factor
MTATDIHRTIDAVWRIESARLIASLARMLRDVGLAEELAQDALVAALEKWPESGVPDQPGAWLMATAKHRAIDRLRRSKLQQRKHEEIARELEDEQAHADDAHLDALDNPFNDDLLRLVFTACHPVLPTHAQVALTLRLLGGLTTDEIARAFLVPEPTIAQRIVRAKRTLAEKQVPYEMPRGDELNERLASVLAVIYLIFNEGYAATAGDDWMRPGLCEDALRLGRMLAELMPNEPEVHGLVALMEIQASRSAARVAPDGEPVLLLEQNRARWDQLLIHRGLAALDRAQKQSAARGTTPGGPYTLQAAIAACHARAVTADETDWAAIVGLYGALARITPSPVIELNRAVALSMLFGPESGLAVVDALTDEPALKDYHLLPAVRGDLLKKLERWSEARDAFERAAQMTRNAREQALLRRRAAECEAAAGANDVVIPPSSKRSA
>NZ_CP046603.1|WP_157030796.1|2977654_2978188_+|polyketide-cyclase
MWKIIGLIVLVAIVAVLVFAATRPDTFRIERSIVVNAPPQRVFEQVNDFNRWRAWSPFETLDPAMKREIAGAQCGTGAVYTWDGNSKAGAGRMEIVESVPASKVGIKLDFTRPMEAHNTAEFVIVPEGTNASRVTWAMHGPQPYIGKVMSLVFSMDRMVGKDFERGLANLKKLAEQG
>NZ_CP046603.1|WP_157030805.1|2989372_2990779_-|ATP-dependent-RNA-helicase-DbpA
MTDYPDTAAPAAAFDRLPLTPALLQGVQALGYTQMTPVQAQALPAILDGRDLIAQAPTGSGKTAAFGLGLLHRLDPASTATQALVLCPTRELADQVGRQLRKLAFAIPNLKLSILCGGMPLQPQLDSLAQHAPQIVVGTPGRLQELLRKRALDLKNVRTLVFDEADRMLDMGFEEPIREIVRATPASRQGLLFSATFPDAVREISRAMLRDPVEVTVEGGERHAAIEQRFYEVDPARKVQLLAALLLQEKPESCVVFCNMRRDVDEVAGSLSHYGFTALALHGDMEQRDRDEVFVQFANRSCNVLVASDVAARGLDVKELAMVVNFDVPSDADTYVHRIGRTGRAGRDGLALTLVGPREQGRVSAIEERQGAPLDWFKATPLSGKPNNVPPAAMVTLRIDAGRTDKLRPGDILGALTGDAGLKADSVGKIDVFPTRSYVAVARGQATHALSRLREGKIKGRKFRVNRM
>NZ_CP046603.1|WP_157030806.1|2990868_2991462_+|hypothetical-protein
METTVAASDPQFAHIRIVLGIVLGLALTTLLKGMAKFVQHPGRERIYGVHLGWALSMFILLVHFWWWEFGLVRVHPWSFTSYAFLVLYVVVLFLLCTLLFPDDLADYSGWRDYFQSRRSWFFGIMAALYVIDFVDTLIKGKPYYEHFGIEYPIRNALMVVLSLVAMKVRSERFHRAFVIFAIVYELSWIYRLYDYLP
>NZ_CP046603.1|WP_157030807.1|2991458_2991728_+|GIY-YIG-nuclease-family-protein
MSSDADIAAPWYVYLLECRDGSLYTGITTDVARRYAQHVAGKGARYTRSRPPVRLLGQFPHPDRASASRAEHAIKQLRPEQKRALCAGA
>NZ_CP046603.1|WP_157030808.1|2991764_2991989_+|RNA-binding-S4-domain-containing-protein
MQHIDFELDRDHDHVELNQLLKLVGLCDSGGAGKAIVASGAVTVDGEVELRKTAKIRAGQTVVLDDVEIRVRGA
>NZ_CP046603.1|WP_157030809.1|2991989_2993135_-|hypothetical-protein
MDERLSLMRGGLLYRLSHAGGVAWTARAYAPWIAGALLLIVLLPVVVLSAVDGRLLRGVSVPLLRDYNVWARFVLALPMLILAAPLADERMWRSLEHLRNLVEPGDNANFERALSTLRRWRDSPWPELILFALAIGASLGAPSLPLYEQATNWRNDGPQFTRAGAWLWWVGFPVFRFLAFLWLWRFVLWVVLLTRFSRLNLSLHASHPDGCGGVGFLGYAHAAFLVMPLVASLLVAGSCAVEVKYLGVPFASLHMLLGGYAVLVLSVMLAPLLLLTPKLAALKRNSLLAYGALGTDSSEEFEHRWLGLARRKAAPILDGGDPSALADLTAVYATASSMGTVPVQRWILLQFIGATVIPLLPLGLLVMPLEDLVRKLFSMLV
>NZ_CP046603.1|WP_157030810.1|2993213_2993663_-|CopD-family-protein
MAYFWIKTAHLVFVMAWMGGVFYLPRILVNIAEAGNEPAVRARLVLMGRRLYRFGHMMFGLAFAFGLVLWLGYKVFPGFPTMVGHGAGWLHAKLALVVLMLAHFTVAGRWLKGVDAGRTLPSSKALRWFNELPVLLLVAIVFLVLAKPF
>NZ_CP046603.1|WP_157030811.1|2993765_2994374_+|methyltransferase
MTKHYDQAYFERWYRESSKKDHAVGSAARLTRKVALAVATAEYHLERPIRTVLDIGCGEGAWRAPLLKLRPKASYLGFDSSEYAVRRFGAPRNLHFARFADFAQLRPCPPVDLLVCSDVMHYLETRELDRGLPGLAELCGGVAFLETFTGEDETDGDNVDFHPRPARFYRQRFAKAGFVPLGSHLWLSPALTDRLVALERPA
>NZ_CP046603.1|WP_157030812.1|2994482_2995748_+|polyhydroxyalkanoate-depolymerase
MLYQMHELGRAWMAPMTYWAEACAKMFGAQGGWLSSLPGAAQTAAGCELLYRIGKDYEKPEFGIHSIDIDGTVYPVIEREMARKPFCRLLRFKRYADDAGNLRDLKEQQPVLVVAPLSGHHATLLRDTVRTLLRDHKVYITDWVDARMVPVGDGEFSLDDYIEYVQDFIRQIGAETLHVVSVCQPTVPVLAAISLMAARGETTPRSMVMMGGPIDTRQNPTKVNDLATHEPLSWFEDNLIQHVPANYPGHGRRVYPGFLQHGGFVAMNPERHFQSHWDFYMHLVKGDLDDAAAHRRFYDEYNAVLDMPAEYYLQTVRIVFQEHLLPRGEWDVRGERVDPSKIHRTALLTIEGELDDISGQGQTRAAHTLCTGIAEEDREHLTVDGAGHYGIFSGRRWRTQVYPQVRDFIARHAERRVPEAP
>NZ_CP046603.1|WP_157030813.1|2995802_2996105_+|hypothetical-protein
MDCPVCRDVTLAMTDRQGIEIDYCPQCRGVWLDRGELDKLIERASADAPPSRAQAAPPPPPPMREQPRGYGHSDEYKSGHYKSDYKYKKKKNLLGELFDF
>NZ_CP046603.1|WP_115842373.1|2996863_2998990_-|EAL-domain-containing-protein
MKLRMGLQARFLALMGVAMLVVIALVALLLNRQEQMRREVEGVSRQAMRTMVGQSLRRQGEAAVTQLAAGLTNPLYYSDLDAVGALARSTLAAPDVRYVIVYDEDGKVVHDGSEDIAHYGRHMDDAMAKQVIASTALHTQFDDRVMDVSMPILIGQQRVGGVRIGYDMQAMRRLQDQSVDRLRSRLDTLGQRHVIWIGLLGVGLLVFGALSLWLIQRLLVRPIRRLAESAQEIEAGHFDTTTPADGRNDEVGDLMRAFDRMSRSLARHDREIRRMAYTDALTGLANRLAFRESLDERLAQSDSRQLALLFADIDDFKRVNDTLGHDAGDDVLLECAHRIESAVARVGGEDALLARFGGDEFVILVQGKDDPQDDVRTLATKLAETLVVDLGAPVEVQGRQVFLGTSIGITLFPEDAASGTTLMKNGDIAMYQAKVAGKNCFRFYSRAMNQAVERRVHLEQELRGAWDRGELSLVYQPVFRLVDGAMIGAEALLRWRHPELGFVAPSVFIDVAEQSGLIEVLGPQVLHAACSDAVAWQKVRKDAEPLFVAVNVSPRQLRNGDLPNVVSACLRDTGLAADLLHLELTETAVIGDELHASALLSELRGMGVRVWLDDFGTGFSGLSHLRRVPVDGVKIDRSFVADVLRDPDDLALTTAIIAMAHSLGILVVAEGVEKEGQYAILRERGCDFAQGYWLGHPVTVDEFLQLRA

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Crispr_ID: NZ_CP046603_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046603_8

3002496-3002669

Unclear

Consensus_repeat	Method
CTGGATCCCGGCCTTCGCCGGGATGACGGTGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP046603_8

>merge|NZ_CP046603|8|3002496-3002669|CRISPRCasFinder
ATGGATTCCAGCTTTCGCTGGAATGACGGTGAGGTCGGTCGCCGTAGTCGGAGTGCCCGAACATTACGGGTCTGGATCCCGGCCTTCGCCGGGATGACGGTGACGTGGATTACCGGCACAAGAGTGCCCTGGCGCTATGGGCCTGGGTCCCGGCCTTCGCCGGGATGACGGTGA

>NZ_CP046603|8|8|3002496-3002669|CRISPRCasFinder
ATGGATTCCAGCTTTCGCTGGAATGACGGTGA	GGTCGGTCGCCGTAGTCGGAGTGCCCGAACATTACGGGT
CTGGATCCCGGCCTTCGCCGGGATGACGGTGA	CGTGGATTACCGGCACAAGAGTGCCCTGGCGCTATGGGC
CTGGGTCCCGGCCTTCGCCGGGATGACGGTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046603.1\|WP_115842373.1\|2996863_2998990_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP046603.1\|WP_157030815.1\|3000899_3001718_+\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|238817
NZ_CP046603.1\|WP_157030814.1\|3000001_3000796_-\|TrmJ/YjtD-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223639
NZ_CP046603.1\|WP_157030817.1\|3005715_3006690_-\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
NZ_CP046603.1\|WP_157031734.1\|2998986_2999865_-\|PhnD/SsuA/transferrin-family-substrate-binding-protein	unknown	unknown	gnl\|CDD\|379006
NZ_CP046603.1\|WP_157030818.1\|3006708_3008553_-\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NZ_CP046603.1\|WP_157030820.1\|3012031_3013528_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|99735
NZ_CP046603.1\|WP_157030812.1\|2994482_2995748_+\|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl\|CDD\|226926
NZ_CP046603.1\|WP_157030809.1\|2991989_2993135_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_157030813.1\|2995802_2996105_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226331
NZ_CP046603.1\|WP_115842381.1\|3008610_3008952_-\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NZ_CP046603.1\|WP_157030816.1\|3002891_3005576_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP046603.1\|WP_157030821.1\|3015126_3017472_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP046603.1\|WP_157031735.1\|3013802_3014924_-\|phytase	unknown	unknown	gnl\|CDD\|271324
NZ_CP046603.1\|WP_157030819.1\|3009097_3010210_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP046603.1\|WP_115842384.1\|3011473_3011905_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP046603.1\|WP_157030811.1\|2993765_2994374_+\|methyltransferase	unknown	unknown	gnl\|CDD\|369778
NZ_CP046603.1\|WP_157030808.1\|2991764_2991989_+\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|379097
NZ_CP046603.1\|WP_115842383.1\|3010206_3011289_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NZ_CP046603.1\|WP_157030810.1\|2993213_2993663_-\|CopD-family-protein	unknown	unknown	gnl\|CDD\|224892

Protein	Function_ID	Function_description	E-value
NZ_CP046603.1\|WP_157030821.1\|3015126_3017472_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	5.94332e-50
NZ_CP046603.1\|WP_157030815.1\|3000899_3001718_+\|inositol-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	1.35218e-108
NZ_CP046603.1\|WP_157030814.1\|3000001_3000796_-\|TrmJ/YjtD-family-RNA-methyltransferase	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	3.14421e-99
NZ_CP046603.1\|WP_157030817.1\|3005715_3006690_-\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	3.05459e-105
NZ_CP046603.1\|WP_157031734.1\|2998986_2999865_-\|PhnD/SsuA/transferrin-family-substrate-binding-protein	gnl\|CDD\|379006	pfam12974, Phosphonate-bd, ABC transporter, phosphonate, periplasmic substrate-binding protein. This is a family of periplasmic proteins which are part of the transport system for alkylphosphonate uptake.	2.79643e-43
NZ_CP046603.1\|WP_157030818.1\|3006708_3008553_-\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	0
NZ_CP046603.1\|WP_157030820.1\|3012031_3013528_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|99735	cd00610, OAT_like, Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.	2.67209e-44
NZ_CP046603.1\|WP_157030812.1\|2994482_2995748_+\|polyhydroxyalkanoate-depolymerase	gnl\|CDD\|226926	COG4553, DepA, Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism].	0
NZ_CP046603.1\|WP_115842373.1\|2996863_2998990_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.89414e-103
NZ_CP046603.1\|WP_157030813.1\|2995802_2996105_+\|hypothetical-protein	gnl\|CDD\|226331	COG3809, COG3809, Uncharacterized protein conserved in bacteria [Function unknown].	1.00995e-25
NZ_CP046603.1\|WP_115842381.1\|3008610_3008952_-\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	4.69731e-49
NZ_CP046603.1\|WP_157030816.1\|3002891_3005576_-\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	3.58875e-94
NZ_CP046603.1\|WP_157031735.1\|3013802_3014924_-\|phytase	gnl\|CDD\|271324	cd14954, NHL_TRIM71_like, NHL repeat domain of the tripartite motif-containing protein 71 (TRIM71) and related proteins. The E3 ubiquitin-protein ligase TRIM71 (LIN-41) is a RING-finger domain containing protein that has been associated with a variety of activities. The NHL repeat domain appears responsible for targeting TRIM71 to mRNAs, and TRIM71 appears responsible for translational repression and mRNA decay. Together with BRAT, TRIM71 may be part of a family of mRNA repressors that regulate proliferation and differentiation. TRIM has been shown to negatively regulate stability of Lin28B, which inhibits the pre-let-7 miRNA precursor from maturing by recruiting the terminal uriyltransferase TUT4. This family also contains the Caenorhabditis elegans NHL repeat containing 1 (NHL-1), a RING-finger-containing protein that was shown to interact with E2 ubiquitin conjugating enzymes in two-hybrid screens. Its domain architecture resembles that of the E3 ubiquitin protein ligases TRIM2, TRIM32, and TRIM71. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	3.33997e-09
NZ_CP046603.1\|WP_157030819.1\|3009097_3010210_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NZ_CP046603.1\|WP_115842384.1\|3011473_3011905_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	8.76043e-29
NZ_CP046603.1\|WP_157030811.1\|2993765_2994374_+\|methyltransferase	gnl\|CDD\|369778	pfam08242, Methyltransf_12, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.08508e-08
NZ_CP046603.1\|WP_157030808.1\|2991764_2991989_+\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|379097	pfam13275, S4_2, S4 domain. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4.	1.1484e-22
NZ_CP046603.1\|WP_115842383.1\|3010206_3011289_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NZ_CP046603.1\|WP_157030810.1\|2993213_2993663_-\|CopD-family-protein	gnl\|CDD\|224892	COG1981, COG1981, Predicted membrane protein [Function unknown].	9.35994e-45

>NZ_CP046603.1|WP_157030815.1|3000899_3001718_+|inositol-monophosphatase
MQKPAVTLMVKAARSAGNVLLRHMNKLDALNIVEKDRMDYASEVDGLAEKEIIKEFRRSTPDYAILGEETGSIGHNRFTWVIDPLDGTSNYLHGIPHFCVSIALVENGEPIHAVIFDPLRNDLFTASRGSGATLNERRIRVADRKDLGGAMVLTGFPPRERERVSAQLKCIDNLLLEAEDIRRTGSAALDLAYVACGRADAYFEAGVKPWDIAAGVLLVREAGGKVSDFRGRTTGPMDNRGLATRQLVAGNLKVADLLQQKIVNTGYAAAFD
>NZ_CP046603.1|WP_157030814.1|3000001_3000796_-|TrmJ/YjtD-family-RNA-methyltransferase
MSSESKSVNPSHTPAQRLRIVLVGTQHPGNMGSAARAMKTMGLARLVLVAPEKRPNEESYALAAGADDVLGDAVICETLAEAVADCRLVLGCTARSRRVQLEELMPRDAAGRAVAQAAGGAEVALVFGRERTGLTNEELQLCHAAVHIPANPDYSSLNLAAAVQVLSYELRLALLEGASAEGESAGTEDPRDLPASHAEMEGFFAQLAETLDAIDFHKGRAPESAMRKLRRLYLRAGLDAREVRILRGILADAQRMAMLAGSKR
>NZ_CP046603.1|WP_157031734.1|2998986_2999865_-|PhnD/SsuA/transferrin-family-substrate-binding-protein
MAAAPLSVLAADDSGVLVLGRISDDPKKNYEQLKPLLDYVVPRLADVGIREGRILMAKDTQQMASYLRRGRVDWVTETAGTAMLLRQRAGARTLLLTERDGVSHYRSVFFARRDSGLTSLDDLRGHSIAFQRPNSTSAYFVPAAELLRRGFSLEILLSPEDRIASDEVGYLFAWSELNISTWVHKGLADVGVMSNLDWANPHRMPPSFRDDLMVIGETVDYPRAVEMVRDGLDPRVQARLREVLIDAAGDPDAGDALLRFFNTTRFMPVDPASQKALDGISEGVARVRAEVE
>NZ_CP046603.1|WP_115842373.1|2996863_2998990_-|EAL-domain-containing-protein
MKLRMGLQARFLALMGVAMLVVIALVALLLNRQEQMRREVEGVSRQAMRTMVGQSLRRQGEAAVTQLAAGLTNPLYYSDLDAVGALARSTLAAPDVRYVIVYDEDGKVVHDGSEDIAHYGRHMDDAMAKQVIASTALHTQFDDRVMDVSMPILIGQQRVGGVRIGYDMQAMRRLQDQSVDRLRSRLDTLGQRHVIWIGLLGVGLLVFGALSLWLIQRLLVRPIRRLAESAQEIEAGHFDTTTPADGRNDEVGDLMRAFDRMSRSLARHDREIRRMAYTDALTGLANRLAFRESLDERLAQSDSRQLALLFADIDDFKRVNDTLGHDAGDDVLLECAHRIESAVARVGGEDALLARFGGDEFVILVQGKDDPQDDVRTLATKLAETLVVDLGAPVEVQGRQVFLGTSIGITLFPEDAASGTTLMKNGDIAMYQAKVAGKNCFRFYSRAMNQAVERRVHLEQELRGAWDRGELSLVYQPVFRLVDGAMIGAEALLRWRHPELGFVAPSVFIDVAEQSGLIEVLGPQVLHAACSDAVAWQKVRKDAEPLFVAVNVSPRQLRNGDLPNVVSACLRDTGLAADLLHLELTETAVIGDELHASALLSELRGMGVRVWLDDFGTGFSGLSHLRRVPVDGVKIDRSFVADVLRDPDDLALTTAIIAMAHSLGILVVAEGVEKEGQYAILRERGCDFAQGYWLGHPVTVDEFLQLRA
>NZ_CP046603.1|WP_157030813.1|2995802_2996105_+|hypothetical-protein
MDCPVCRDVTLAMTDRQGIEIDYCPQCRGVWLDRGELDKLIERASADAPPSRAQAAPPPPPPMREQPRGYGHSDEYKSGHYKSDYKYKKKKNLLGELFDF
>NZ_CP046603.1|WP_157030812.1|2994482_2995748_+|polyhydroxyalkanoate-depolymerase
MLYQMHELGRAWMAPMTYWAEACAKMFGAQGGWLSSLPGAAQTAAGCELLYRIGKDYEKPEFGIHSIDIDGTVYPVIEREMARKPFCRLLRFKRYADDAGNLRDLKEQQPVLVVAPLSGHHATLLRDTVRTLLRDHKVYITDWVDARMVPVGDGEFSLDDYIEYVQDFIRQIGAETLHVVSVCQPTVPVLAAISLMAARGETTPRSMVMMGGPIDTRQNPTKVNDLATHEPLSWFEDNLIQHVPANYPGHGRRVYPGFLQHGGFVAMNPERHFQSHWDFYMHLVKGDLDDAAAHRRFYDEYNAVLDMPAEYYLQTVRIVFQEHLLPRGEWDVRGERVDPSKIHRTALLTIEGELDDISGQGQTRAAHTLCTGIAEEDREHLTVDGAGHYGIFSGRRWRTQVYPQVRDFIARHAERRVPEAP
>NZ_CP046603.1|WP_157030811.1|2993765_2994374_+|methyltransferase
MTKHYDQAYFERWYRESSKKDHAVGSAARLTRKVALAVATAEYHLERPIRTVLDIGCGEGAWRAPLLKLRPKASYLGFDSSEYAVRRFGAPRNLHFARFADFAQLRPCPPVDLLVCSDVMHYLETRELDRGLPGLAELCGGVAFLETFTGEDETDGDNVDFHPRPARFYRQRFAKAGFVPLGSHLWLSPALTDRLVALERPA
>NZ_CP046603.1|WP_157030810.1|2993213_2993663_-|CopD-family-protein
MAYFWIKTAHLVFVMAWMGGVFYLPRILVNIAEAGNEPAVRARLVLMGRRLYRFGHMMFGLAFAFGLVLWLGYKVFPGFPTMVGHGAGWLHAKLALVVLMLAHFTVAGRWLKGVDAGRTLPSSKALRWFNELPVLLLVAIVFLVLAKPF
>NZ_CP046603.1|WP_157030809.1|2991989_2993135_-|hypothetical-protein
MDERLSLMRGGLLYRLSHAGGVAWTARAYAPWIAGALLLIVLLPVVVLSAVDGRLLRGVSVPLLRDYNVWARFVLALPMLILAAPLADERMWRSLEHLRNLVEPGDNANFERALSTLRRWRDSPWPELILFALAIGASLGAPSLPLYEQATNWRNDGPQFTRAGAWLWWVGFPVFRFLAFLWLWRFVLWVVLLTRFSRLNLSLHASHPDGCGGVGFLGYAHAAFLVMPLVASLLVAGSCAVEVKYLGVPFASLHMLLGGYAVLVLSVMLAPLLLLTPKLAALKRNSLLAYGALGTDSSEEFEHRWLGLARRKAAPILDGGDPSALADLTAVYATASSMGTVPVQRWILLQFIGATVIPLLPLGLLVMPLEDLVRKLFSMLV
>NZ_CP046603.1|WP_157030808.1|2991764_2991989_+|RNA-binding-S4-domain-containing-protein
MQHIDFELDRDHDHVELNQLLKLVGLCDSGGAGKAIVASGAVTVDGEVELRKTAKIRAGQTVVLDDVEIRVRGA
>NZ_CP046603.1|WP_157030816.1|3002891_3005576_-|HAMP-domain-containing-protein
MPPICPDRAAGKTETQVTSKTADTESNPHRLAPMPLPDAHRAAATAASPHRSSTASASAWQGLRGSLGRRIGLPLVATMVLMMAGLTVMVSHYAAQAVETRARDDLRSAASILRDNIATYEQSLTESTATLGGALQAALSGGPVALTQSKDGAPLLSLQGQTVDATFAAVDRFTADTGAVVTIFARDGDDFVRVSTSLRNEKGERVIGTKLAHDSPAYAPIAKNQPYTGKTRLFGRDYMVHYRPLLDDAGALVGVLFVGKEYGAELTALKERTRAMHIGEHGHFLVVETSKDGVETLAIHPAAEGAALSDLVDAAGLKSLREAIAAGRGIATVDLSAKPTAAAEPTLVAVETFPDWKWAVVAAEPVSQIAASTHALVAMIAVASLITLLVILAVSWWCVRRIVTQPLEQVARLADDVAQGRFDGAMPPPRHDELGRLQQAMGRMRERVQSVIAAQREMSQRHEVGQISFRMDDAAFPGQYGEMVRDTNALVAAHIEVKMQLVDVMRHYAVGDLSIDMDRLPGEKAVLTQTMDTVKANLSAINDEIKRLAAAAAAGEFGVRGDAARFEHDFRAMVDGLNAMMSVSDANLDQVSRLLRAIARGDLTARMHGEFHGVFARMRDDADATVAQLTGIVGRIQHASDAIDGAAAEIAAGNADLSRRTEQQAASLEETAASMEELTSTVRQNAESARQANQFAIDAASVAAQGSEVVGQAVTTMREIETASHRIAEIIGTIDGIAFQTNILALNAAVEAARAGESGRGFAVVASEVRALAQRSANAAKEIKTLIEASVEKVNDGSALVNRAGATMDDITTSVRRVTDIMADISTASQEQSAGIDLVSGAITSMEEGTQQNAALVEEASASAHSMEEQARALAGAVRQFVLADTPAVTRAAA
>NZ_CP046603.1|WP_157030817.1|3005715_3006690_-|protein-translocase-subunit-SecF
MKLFPLHLIPNDTKIDFLRTRYVSMTITVLLFIASLVVIGTYGFKKEAYALEFTGGTLVETTFQKPADVDQVRENLAKAGFENAQVQAFGGGNGLMIRLQPHGESNNATGSQSIANQVVKAVSTEENPARVQRSEFIGPQVGADLVRDGIYATAFMLIGFLIYIAFRFEWKFAVVASLTAFFDLIVTAAYIYISGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRTLRVDSIEVLNRSINQTLSRTVITAVMFFLSAYALYLYGGSSMEGLALTHMIGAAIVVFSTILVAVPMLAIGPFKVSKQDLLPKAKDEAALARRP
>NZ_CP046603.1|WP_157030818.1|3006708_3008553_-|protein-translocase-subunit-SecD
MLEFPKWKYFLILLVLGLGVLYALPNVYQKDPSVQITANRSGQLDEALRTRVKAELAQAGITPRSVEIEGDNLMVRLPSLDAQSKANNALRTSLGENYTVALNLASTVPDWLANLGGKPMVLGLDLQGGVHFVMQVDQRAALEKRVDAYAEDIRVSLRDAKIAYQSVERRPDNSILAMLAPGQDAERARNELARLMPVLNFDVTGNNVAVTIPEAELRAIAAGAIEQNVTTLRNRVNQLGVAEPIIQRQGEDRIVVQLPGVQDTAEAKRLIGATATLEFRAVVDGDAMEAKRTGVMPPGARLYTIRNTDQPVLLSKRVLASGDQMVGAKVGRDQNGLPAVDITLNSIAGQRMFDFTSENVGKLMSVVYIERIPTVTMVNGQEVRSVRVQEEALSPTRIAGVFGKNFQTTGLEKVEAETLAKLLSAGSLAAPMDFVEERIIGPSLGAENVERGITAVLYAFVFTLAFFTIYYRMFGVITSVALLMNLLIVVAVMSMFGATMTLPGFAGLALSVGLSVDANVLINERIREELRHGVPPKAAIAAGYEKAGGTIMDANLTGLIVGVALYVFGTGPLKGFALTMIIGIFASMFTAITVSRALAQLIYGNRKKLKSVAI
>NZ_CP046603.1|WP_115842381.1|3008610_3008952_-|preprotein-translocase-subunit-YajC
MNLLDLVISPAYAQAAPQAGAGGFGMSLLFPILLIAVMYFLMIRPQMKRQKEHRAMLEKLSKGDEVITNGGIAGTVSDIGENFITVEIADNVRIRVQKGAIANVLPKGTLKSA
>NZ_CP046603.1|WP_157030819.1|3009097_3010210_-|tRNA-guanosine(34)-transglycosylase-Tgt
MSRLSFELLRTDGAARRGRLTFPRGTVETPTFMPVGTYGSVKGVLPEQVRELGAEMILGNTFHLYLRPGLDVIGDHGGLHRFTGWNGPILTDSGGFQVFSLAHKRKITEQGVTFAAPTDGSKVFLGPEESMRIQKVLDSDVVMIFDECTPYPATEDVARRSMELSLRWAERSKRAHEGNDAALFGIVQGGVHEALRTRSAAALVDIGFDGYAIGGLAVGEPEAERNHMLEHTCPQLPADQPRYLMGVGRPEDLVEGVARGIDMFDCVMPTRNARNGHYFTSFGTVRVRNAKYERDLRPIEEGCDCYACRNGFSRSYLRHLDRCNEMLGPMLGTLHNLRYYQRLMAQMREAIAQGTFAAFRESFYAARTPE
>NZ_CP046603.1|WP_115842383.1|3010206_3011289_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MKKSDFHYDLPPELIAQAPLPERSASRLLVVPPTRGNAFDSGFQDRVFRDLPDLLQPGDLLVFNDTRVIPARLYGQKTTGGRVEILIERMLGGFEVRAQLGVSKSPKEGARIALDAGGEAEVLGRDGEFYRLRFHIDESLEKYLLHAGRLPLPPYIQREAGTDDDTRYQTVFAREVGAVAAPTAGLHFDEALLDALKARGVEFGHVTLHVGAGTFQPVRVDELDQHVMHSEWLNVGAALIEQIRRTRAAGGRVIAVGTTVVRALESAMRRNDDGEGELQPYAGETRLFILPGYRIRSVDALITNFHLPESTLLMLVSAFAGKARVFAAYDHAIAERYRFFSYGDAMLLFPQSHDEREQAE
>NZ_CP046603.1|WP_115842384.1|3011473_3011905_-|Lrp/AsnC-family-transcriptional-regulator
MKITDADQQVLSVLRENARASTADIARRLKLSRTTVHSRIDRLEREGVIQGYTVRVHDAAERGYLRAHIMITVLPKRAPSVAAALHAMPEVRALHSVSGPFDLVALGVAPSVEAMDELTDRIGAIDGVERTTSAIVLSAKFER
>NZ_CP046603.1|WP_157030820.1|3012031_3013528_+|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MAVIDRLAPLRAHGGRRRTHGLDDATIARFAHTHAELIEAIEAAEQEYQRVKDDFADLLELDEDAQVHAVQSGYVNFYPDDAVNPYVALVARGPWVVTMKGAVLHDSGGYGMLGFGHAPKPVLAAMARPQAMANIMTPSLSQLRFDQALRAAIGAERGGCPYEKFFCLNSGSESVSLAARIADANTKLMTDTGGRHAGRTIKRVVVKGSFHGRTERPALYSDSSRKTYLQHLASFRGEDSVLTVEPYDVDALKKVFADADANGWFIEAMFLEPVMGEGDPGRSVPPAFYAAARELTRSHGALLLVDSIQAGLRAHGVLSIIDYPGFEQLDPPDMETYSKALNAGQYPLSVLAVGAQAAQLYKKGLYGNTMTTNPRALDVACAVLAQVTPQLRENIRARGAESLQKLEKLKAELGGMITKVQGTGLLFSCELSPQFKCYGTGSTEEWLREQGIGVIHGGANSLRFTPTFTITSEEIDLLVAMVARALREGPRAQQAAAA
>NZ_CP046603.1|WP_157031735.1|3013802_3014924_-|phytase
MRWAAMALAFGLTACATTGTAPVAQHDREPDEAMEVDPLLAQAGIAHQIVAEAFLTASTPDENVDSPASWRTPDGKRWLIATGKASDRLIVYDGDTGATLRTVGGPGTALGQLQRPNGISVIDHYVLVVERDNHRVQMFQLPDFRPLLAFGADDLKHPYGLWVRAQRDSYEVIVSDNYMSPQNEDVPPPLAELDKRFKRYQLRRVPEGWQARLMETFGDTGEAGAIRIAESVFGDIRHDRLLLAEEDIATGTRIREYGLDGTYRGRDIGADLFKAQAEGMALHRCEGGAGYWIATDQFKDRSLFHVFDRVTLQHLGAFAGNKTANTDGVWLDQRGDKRFPQGVFYAVDDDQAVAAFDWRDIARALSLPACKAE
>NZ_CP046603.1|WP_157030821.1|3015126_3017472_+|TonB-dependent-receptor
MKRNVLAAAMSRALVCTVIAPMSLAAAFNTAVAAEAPADASPDPKQLDSVVVQADIAYRNRTDSVAPVLSYDLEYFQRFEPLTVGDMLKRVPSVAFVSDVLEYDGAQLRGLDPGYTQILINGKKVPGAGNDRSFFVDRIPAELVERIEIIRSTSANRSGDAVAGALNIVLRDAYEFDGRYVRLGALRFDDGEVKPTYGAVASGEVGGGRLLGGFNVQGRYNPKVKRSDRFEEPGGDFVDREDQDDTRDGDDYSANLSYTRDIDTGRLSVDGFYVRTDRTETEHSVEYNDPTSTSRDNLLSINDQVETIRQDNWSLGVEYAFDMAGGRTEFDVDYASFDDDTRSTEEESGFDDEDAPPSFDEREGTRTLTDTRDSEGSFKLAHKRGVGGATMEFGVDYLDKRRETTLQVSEVDTDEEGAALPPYEDFDRNDSRIDETRVDPYLMFSGTAGALAWEAGLRYETTDVDVAFDDDTASNDYNTLLPSAHLKWDFTSADRLLFSVGRTVRRPNFDQILPLTLEEEFGDNDFTGNPTLDPERAWGVDFGYERRLGARGVFGVNVFYRDVKDLIEIVNTGEPSSTAIGDYEDEVEEFLDENPGATPTTPGYPEFDPDSFVYTARNVGDGSVYGIEFDLSTPLTALGLPDTGLFVNYSWLDSDVKDDFGERRFNNQAKYVYNVGFIQDIRDWGMSFGASYRRQGDAFSRMLAEEVSTHYDGDLEVFIEKRFGDDLSLRLTGSNLLDAHKDEVFHKFDNAADQFDRDYDEFELETESSGRVYQLIMRYSF

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Crispr_ID: NZ_CP046603_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046603_9

3400508-3400611

Orphan

Consensus_repeat	Method
CCCCAACCCCTCTCCCGGAGGGAGAGGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046603_9

>merge|NZ_CP046603|9|3400508-3400611|CRISPRCasFinder
CCCCAACCCCTCTCCCGGAGGGAGAGGGGCTAAAACCGCGCGGCCGGTGACGCCGACACTCCGCCGACCCTCACCCCCAACCCCTCTCCCGCAGGGAGAGGGGC

>NZ_CP046603|9|9|3400508-3400611|CRISPRCasFinder
CCCCAACCCCTCTCCCGGAGGGAGAGGGGC	TAAAACCGCGCGGCCGGTGACGCCGACACTCCGCCGACCCTCAC
CCCCAACCCCTCTCCCGCAGGGAGAGGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046603.1\|WP_157031065.1\|3398958_3400260_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350657
NZ_CP046603.1\|WP_115844895.1\|3404245_3404515_+\|flagellar-biosynthetic-protein-FliQ	unknown	unknown	gnl\|CDD\|224898
NZ_CP046603.1\|WP_115844942.1\|3402245_3402578_+\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|236360
NZ_CP046603.1\|WP_115844883.1\|3397121_3398519_+\|flagellar-protein-export-ATPase-FliI	unknown	unknown	gnl\|CDD\|274607
NZ_CP046603.1\|WP_115844938.1\|3395268_3396255_+\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|235561
NZ_CP046603.1\|WP_115844891.1\|3401208_3402240_+\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849
NZ_CP046603.1\|WP_157031066.1\|3400688_3401183_+\|flagellar-basal-body-protein-FliL	unknown	unknown	gnl\|CDD\|180207
NZ_CP046603.1\|WP_157031070.1\|3406775_3408854_+\|flagellar-biosynthesis-protein-FlhA	unknown	unknown	gnl\|CDD\|235672
NZ_CP046603.1\|WP_157031755.1\|3403446_3404235_+\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_CP046603.1\|WP_115844940.1\|3396296_3396899_+\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235562
NZ_CP046603.1\|WP_157031064.1\|3398515_3398959_+\|flagellar-export-protein-FliJ	unknown	unknown	gnl\|CDD\|376722
NZ_CP046603.1\|WP_157031063.1\|3393560_3395258_+\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|183757
NZ_CP046603.1\|WP_157031068.1\|3404720_3405509_+\|flagellar-biosynthetic-protein-FliR	unknown	unknown	gnl\|CDD\|376520
NZ_CP046603.1\|WP_115844879.1\|3393141_3393510_+\|flagellar-hook-basal-body-complex-protein-FliE	unknown	unknown	gnl\|CDD\|376721
NZ_CP046603.1\|WP_157031062.1\|3389997_3391467_+\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|225114
NZ_CP046603.1\|WP_157031067.1\|3402574_3403243_+\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|377320
NZ_CP046603.1\|WP_115845004.1\|3388221_3389610_+\|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl\|CDD\|235648
NZ_CP046603.1\|WP_157031071.1\|3408909_3411057_+\|flagellar-biosynthesis-protein-FlhF	unknown	unknown	gnl\|CDD\|237182
NZ_CP046603.1\|WP_115845006.1\|3389617_3390001_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|381090
NZ_CP046603.1\|WP_157031069.1\|3405621_3406779_+\|flagellar-biosynthesis-protein-FlhB	unknown	unknown	gnl\|CDD\|235569

Protein	Function_ID	Function_description	E-value
NZ_CP046603.1\|WP_157031065.1\|3398958_3400260_+\|hypothetical-protein	gnl\|CDD\|350657	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains. The flagellar hook-length control protein FliK is a soluble cytoplasmic protein that is secreted during flagellar formation. It controls hook elongation by two successive events: by determining hook length and by stopping the supply of hook protein. It contains an N-terminal domain that determines hook length and a C-terminal domain that is responsible for switching secretion from the hook protein to that of the filament protein, by interacting with FlhB, the switchable secretion gate.	3.14177e-24
NZ_CP046603.1\|WP_115844895.1\|3404245_3404515_+\|flagellar-biosynthetic-protein-FliQ	gnl\|CDD\|224898	COG1987, FliQ, Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion].	1.06319e-18
NZ_CP046603.1\|WP_115844942.1\|3402245_3402578_+\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|236360	PRK08983, fliN, flagellar motor switch protein FliN.	3.01213e-48
NZ_CP046603.1\|WP_115844883.1\|3397121_3398519_+\|flagellar-protein-export-ATPase-FliI	gnl\|CDD\|274607	TIGR03496, FliI_clade1, flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. [Cellular processes, Chemotaxis and motility].	0
NZ_CP046603.1\|WP_115844938.1\|3395268_3396255_+\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|235561	PRK05686, fliG, flagellar motor switch protein G; Validated.	1.16321e-139
NZ_CP046603.1\|WP_115844891.1\|3401208_3402240_+\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	2.22626e-160
NZ_CP046603.1\|WP_157031066.1\|3400688_3401183_+\|flagellar-basal-body-protein-FliL	gnl\|CDD\|180207	PRK05696, fliL, flagellar basal body-associated protein FliL; Reviewed.	9.08789e-33
NZ_CP046603.1\|WP_157031070.1\|3406775_3408854_+\|flagellar-biosynthesis-protein-FlhA	gnl\|CDD\|235672	PRK06012, flhA, flagellar type III secretion system protein FlhA.	0
NZ_CP046603.1\|WP_157031755.1\|3403446_3404235_+\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	6.69702e-108
NZ_CP046603.1\|WP_115844940.1\|3396296_3396899_+\|flagellar-assembly-protein-FliH	gnl\|CDD\|235562	PRK05687, fliH, flagellar assembly protein FliH.	7.33815e-32
NZ_CP046603.1\|WP_157031064.1\|3398515_3398959_+\|flagellar-export-protein-FliJ	gnl\|CDD\|376722	pfam02050, FliJ, Flagellar FliJ protein.	1.13977e-08
NZ_CP046603.1\|WP_157031063.1\|3393560_3395258_+\|flagellar-M-ring-protein-FliF	gnl\|CDD\|183757	PRK12800, fliF, flagellar MS-ring protein; Reviewed.	0
NZ_CP046603.1\|WP_157031068.1\|3404720_3405509_+\|flagellar-biosynthetic-protein-FliR	gnl\|CDD\|376520	pfam01311, Bac_export_1, Bacterial export proteins, family 1. This family includes the following members; FliR, MopE, SsaT, YopT, Hrp, HrcT and SpaR All of these members export proteins, that do not possess signal peptides, through the membrane. Although the proteins that these exporters move may be different, the exporters are thought to function in similar ways.	1.24898e-51
NZ_CP046603.1\|WP_115844879.1\|3393141_3393510_+\|flagellar-hook-basal-body-complex-protein-FliE	gnl\|CDD\|376721	pfam02049, FliE, Flagellar hook-basal body complex protein FliE.	9.74069e-26
NZ_CP046603.1\|WP_157031062.1\|3389997_3391467_+\|AAA-domain-containing-protein	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	4.87288e-147
NZ_CP046603.1\|WP_157031067.1\|3402574_3403243_+\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|377320	pfam04347, FliO, Flagellar biosynthesis protein, FliO. FliO is an essential component of the flagellum-specific protein export apparatus. It is an integral membrane protein. Its precise molecular function is unknown.	9.08679e-22
NZ_CP046603.1\|WP_115845004.1\|3388221_3389610_+\|RNA-polymerase-factor-sigma-54	gnl\|CDD\|235648	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed.	1.05081e-143
NZ_CP046603.1\|WP_157031071.1\|3408909_3411057_+\|flagellar-biosynthesis-protein-FlhF	gnl\|CDD\|237182	PRK12727, PRK12727, flagellar biosynthesis protein FlhF.	3.22824e-91
NZ_CP046603.1\|WP_115845006.1\|3389617_3390001_+\|response-regulator-transcription-factor	gnl\|CDD\|381090	cd17535, REC_NarL-like, phosphoacceptor receiver (REC) domain of NarL (Nitrate/Nitrite response regulator L) family response regulators. The NarL family is one of the more abundant families of DNA-binding response regulators (RRs). Members of the NarL family contain a REC domain and a helix-turn-helix (HTH) DNA-binding output domain, with a majority of members containing a LuxR-type HTH domain. They function as transcriptional regulators. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	9.22871e-30
NZ_CP046603.1\|WP_157031069.1\|3405621_3406779_+\|flagellar-biosynthesis-protein-FlhB	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	9.15453e-172

>NZ_CP046603.1|WP_157031065.1|3398958_3400260_+|hypothetical-protein
MQAFDALFGGQRANSARNTTPDASRASNAQDDAASSGGFDRMLQAQGSRGSTTASRMNESPNASAQAKGKDMSPRDADSPRAAEESKSSETKSNETKSNDASRETARAESRDDAPRDASDGGSGSDTAATASEDTTAPSDTTSTAPTAAPGDATAPALPEQMLALLNGLAGASTGAAATSFAVAPEAQPPGLLRDVAVATASDPRGGNATAPVLPTLPAAQAATAAPTDGDATAAFAMAMGAAASADTKTSGATDTAALDSIGIGDTASTSASLPSVSTMTNHPLPRGVAAAVQANTPIPLDNGFDDGFSSRIAWLADQKIGHAEIRITPDHLGAIDVRLQLDGNRVNAEFHSAQPDVRHALESSLPRLKEMLGQQGLQLGQADVGQRQAQQQSNGQTASFGGSNERGEAANDAGWSRGPAVRASRGLLDEYA
>NZ_CP046603.1|WP_157031064.1|3398515_3398959_+|flagellar-export-protein-FliJ
MTRSQRLDPLLNLMQQRQDAAARDVAERDRQLAEQEQRLDALRRYAEEYAITPSEATIAPALLANRIAFRAKLETAVDQQTRIVDSSRQNRDVERTRLMLASRDNKVLEKLADSYRAQESRVAEQRVQRELDDLGGRRRTNGNDGAE
>NZ_CP046603.1|WP_115844883.1|3397121_3398519_+|flagellar-protein-export-ATPase-FliI
MTTPASHWQDARNLRLAARLGASSSQPVSMGLAREGVLRRAVGLTLEASGCSAPLGSRCRVETHGGVWVDAEVVGFSGDRTFLMPSAHLEGLLPNARVVPSRQRGEVAVGEGLLGRVIDSDGVPLDGRGPIRAESWVGLAGKSVNPLMREPITRSLDVGVRAINALLPIGRGQRVGLFAGSGVGKSTLLGMMTRFTAADVIVVGLIGERGREVRDFVEATLGEEGLRRAVVVAAPADRPPLARLHGALRATAIAEWYRDQGLHVLLLMDSLTRYAHAQREIGLSVGEPPTTRGYPPSVFAKLPALVERAGNGADGRGSITAFYTVLTEGDDQQEPIADAARAILDGHIVLTRRIADAGQYPAIDVEVSVSRVMQDITDAPWRERIRKLKRLMSAYNAQRDLIAIGAYQRGNDPVVDEALARWPAILNFLGQDVSEASDVAASRDALARLLDDVREPVVARQMETA
>NZ_CP046603.1|WP_115844940.1|3396296_3396899_+|flagellar-assembly-protein-FliH
MAGAVRWTAPGLEPVEPEPVVELPPPPSVEELQQIEQAAHDQGYADGLARGHAEGFATGQAEVRRLVAQIEGILDGFTRPLARLDDEVSEALAELAVRVAGSLIGPAYTADPSLLADLVREALDAVGTSQRGVELRLHPDDMGVLYPHLAGLDGVRLTNDTTLARGELRVHSESVRIDGTLAARLQAALESTIAAHGVAR
>NZ_CP046603.1|WP_115844938.1|3395268_3396255_+|flagellar-motor-switch-protein-FliG
MSGVQRAAVVLLSLGEAQAAEVLKHMSAKEVQKLGVAMTSVSGVSRESVGKVIDQFVDTLAQPSGLGSGADEYVRAVLVQALGEERASGLIDRILLGRNTSGLDTLKWMEPRAIADLVRNEHPQIIAIVMAHLESDQAAEALKCLPDRVRADVLLRIATLDGIPPNALNELNDVMARQFAGAQNLKSSSVGGVKVAANILNFMDSGQDEQILGAIGEVDGELGVRIRDLMFVFDNLAEIDDRAMQAILREVPNDKLSVALRGAEAKVREKITSNMSQRAAEILVEDMEARGPVRLAEVEAAQKEILSLVRKMADAGTIQLAAKAEAFV
>NZ_CP046603.1|WP_157031063.1|3393560_3395258_+|flagellar-M-ring-protein-FliF
MAVITLPNQSKLRELRGLQDIPVVRQLGLFALVAAVIALGLWMFFWTQKPDYVPVFAGLDPKSTSEASELLTTAQIPFRIDPGSGALAVPQDQLGNAKLALAAAGLPAKTDSGFEAIKGDQGFGTSQFIENARYQHALESELARTIANLRPVREARVHLAMPKPSAFTRQKEPASASVVLQLHSGAALEQGQVDAIVHLVASSIPGLPPERVTVVDQYGRMLSNVDPDSDAAISAKQFDQQHRLEATYVQRIHELLEPMTGNGRVSAQVSVDMDFAQTEEAREVYGPQQPMIRSEQLSESSAGGGNAPQGVPGSASNTPAAAPPANAAPNANAPNAAAVAQQQQQAAPNGPSSRSSVRNYEIDRTLTHTRQGPGRVRRVTAAVLVDNVPAAIGKDGKPSLRALNEAELKRIESLVQQAIGFDQQRGDAVSVVNAPFARDITAMGEEENTPLWEHPRAMEFLRIIVGGLAVLALILFVLRPMFRQLMGAKPDTKKNKKALAEATVIPVDDEEISVALSAPAQEAATPALPPGAMTFDDKLEVARAAVSNDSKRVAQVVRDWVESDA
>NZ_CP046603.1|WP_115844879.1|3393141_3393510_+|flagellar-hook-basal-body-complex-protein-FliE
MTDAISSILSQIRAHEMRMRGPDAAPGNAIAPSALAPGAASGATGAAGAPGFQQTLNNAIDSVSRAQNTSGALQQAFELGDPRADLARVMVAMQQSQVAFRATVEVRNRLVQAYQDVMNMPV
>NZ_CP046603.1|WP_157031062.1|3389997_3391467_+|AAA-domain-containing-protein
MSESRILLIDNDLARAERVATLLEFMDFTPRIAADASEINLDRARATDWVAVIAGDTSGDAAAWDRFAAWLGSHPMHPPVLELPGHGDNASWRVQIHPDSVWALDYPIRRTQLQDVLRRASLKRLDDDARREIPQVGPTGRSAAVLRLNRMIDQVANFDTTVLILGESGTGKEVAARAIHARSKRREKPFVAINCGAIPPDLLESELFGHEKGAFTGALTQRKGRFEMAEGGTLLLDEIGDMPMAMQVKLLRVLQERCFERVGGGATMKCDVRVIAATHRNLESHIAEGKFREDLFYRLNVFPIEMPSLRERAADLPDLINAISRQLSDSGRGRVTLAGDAVAMLQQYAWPGNVRELSNLLERLSVLHPNGLVRADDLPARYRCTLPAETLASIDAIQPEEPAPVMALMREAEAPDPSTLSPTTTLPPQGIDLRGHIANIELDLIRAALAQTGGVVAHAAPLLGLRRTTLVEKLRKYGIERDTMELAEL
>NZ_CP046603.1|WP_115845006.1|3389617_3390001_+|response-regulator-transcription-factor
MRELRILIVDDHPGFISAAIRHLRKQPWANVVGTAGNGIEAITQCETLRPDVVLMDMAMPEMGGLQAARLIKAQDEPLPFIVIASHFDDTEHREHALRAGADAFVSKLAYIQDVLPLLERLATEETP
>NZ_CP046603.1|WP_115845004.1|3388221_3389610_+|RNA-polymerase-factor-sigma-54
MKATMSPKLGLGVNLTPQLLQSIRLLQLTAPQLELELRQALERNPLLEQDEAEDEGVDSATDAQQEAAAWDELPEPSFLSGGNGGGEFDDDAASRIADGESSDPRVRLLQSLSLQWKPRDVELAAWWLDQCDDRGYLEAPLDELHLLGASSCNVDATELEIVRQRLLHGEWPGVAARDAAECLDAQLSLQPESEARTLAARILADHIDLLAMHDEAALARALKVDAEAVRAAVALILTLRAHPIADAAVNERDIVVPDVVAWRADGRWHVALNGRTAPRLRIAPHCERALADAPGDVSALRGLLDEARWLVRGVAMRNDTLLRTTQVLVERQRAFLERGEEAIAPLTLREVADAIGMHESTVSRITSGKYLQTPRGTIELKRLFAVRLDGAEVSGSAVKAMVKRLIDDEPSHAPLADDTIAGLLARQGVRVARRTVAKYRDQLAIAPARQRRRPAALMAKAG
>NZ_CP046603.1|WP_157031066.1|3400688_3401183_+|flagellar-basal-body-protein-FliL
MSKPAAQAAPPAPKSNNLALWILIALLAIGLAGAGAFWFLQGRGGEAHAADKPESAATQPARYYALEPAFVVNLADTSSVRYLQADVQVMTRDEATGAALELHTPAIRNRLLLLFGQQTAAQLAQRSAKERLQQQALAEVRNVLKAERAPDKVEAVFFTSLVTQ
>NZ_CP046603.1|WP_115844891.1|3401208_3402240_+|flagellar-motor-switch-protein-FliM
MTDLLSQDEIDALLHGVDSGAVETEPPPAPGEARNYDFASQDRIVRGKLPTLEMINERFARTWRIGLFNLLRRSADLSVRGIDLIRFGEYMHSLQVPTNLNLVKMKPLRGTALVMFEPRLVFTVVDNFFGGSGKYHTRIEGREFTPTEMRVIQLLLKQTFADLVDAWAPVMPVEFEYLNSEVNPHFANIISPREYIVVCRFHVELEGGGGEFHVSFPYAMLEPIREQLDAGVQSDRIERDESWTVALRSQLHDAEIELSSVLAQRSISLRDLCRLRVGDVIPIEIPGTATLKVEQMPLFSGEFGTHNGRNAIKVNAVHAVREKPVFDPTNPDSIAVHTALTQA
>NZ_CP046603.1|WP_115844942.1|3402245_3402578_+|flagellar-motor-switch-protein-FliN
MNNQDSAARAAFDPLTAETGGLTSDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERAAGEPLDLYVNGTLIAQGEVVVVNDRFGVRLTDVVSPAERIKRLR
>NZ_CP046603.1|WP_157031067.1|3402574_3403243_+|flagellar-biosynthetic-protein-FliO
MSGSGSVESAAAVALTPTPLPQAEDGLRSGSDIVIGTTVNTVEAAAPAPAPAPAGEGRGEGTSEAVASNPAEPQAAPTAAQVLKKPATAHTATVGQPTKPQTFAKPAEGPGVGGAVFALILVVSLILGLGWLAKRMPGFGRVAGGNGLRVVGSLSLGPRDRVVVVDVGGTQLLLGVGQNGMTTLHTLSEPLPVAQPSQGTPNLQNLATPFAQLLAKHLGKKP
>NZ_CP046603.1|WP_157031755.1|3403446_3404235_+|flagellar-type-III-secretion-system-pore-protein-FliP
MATAFAPLHAQALPDPVAAQATAQPAAPLSAPGLPSLNKPLPSVTVGKVGGEPVSMPMQVLLLMTGITLLPAALLGLTAFTRIIIVLGLLRQALGTGQTPSNQVLLALALFLTAMVMTPVFDQAWAAGIAPYLNDQMDFRSAWTAASEPFRGFMLAQIRENDLMTFAGLSNSGPYATPQDVPFSVLAASFLTSELKTAFEIAFLIYIPFVIIDLVVASVLMSMGMMMLSPMLISAPFKILLFVLVDGWVLVVGSLAASFNPV
>NZ_CP046603.1|WP_115844895.1|3404245_3404515_+|flagellar-biosynthetic-protein-FliQ
MTPETALTEIGRGLQMALLLGAPPLIAVLVVGVVVGIVQAATQLNEPTIGFVVKAIALVATLALTGNFLLGKLVGFTTDLFHRIPHIVG
>NZ_CP046603.1|WP_157031068.1|3404720_3405509_+|flagellar-biosynthetic-protein-FliR
MEPTSATIIDGLNLFGMLATVLWHAIRIGAAMQAMPMIGGRGVPMRARLMITLALSGALSALLPTPPAAGVDAATVLTVVREFAVGLAIGTVLRLAFEAGQFAGELVSQGMGLSFATMADPLSGASSPVLSQWFYLVFGLLFFAFDAHLALVRLLLDSYHALPLGTPIPDVQQFLSVVPTFFTAALQAGLLLALPVIVAMLAVNLAFGVLARAAPQLNPVQLGLPVALLVGLVLLMLLAREMQGPVERLFDSAFEAARAVTA
>NZ_CP046603.1|WP_157031069.1|3405621_3406779_+|flagellar-biosynthesis-protein-FlhB
MSSEDQEDKTEQPSEKRLREARERGDVPRSRELGNVAVLGCAAMALVATGSGIGSASQDWLRQALTIDPAILDQPDRLVPHAASLLLGLLKPMLPVLLAALGACFIAPMVMGGLRFASKSLAPDFARLSPMNGFKRMYGKESLAELVRSVLRVLLIGGLAGMVVWGAFRHLTDMAGMSLHEGVAVGLSLITKAVMAMVGALGLLALIDVPWQHWSYRNRLKMSKQELRDEYKESEGNPEVKARVRQIAAQLSRRQQMEAVPTADVVVTNPTHYAVALKYEAGKMRAPKVVAKGVDEIALAIRDVAGKHRVSIIEAPPLARALYRHAQIDQEIPVKLYAAVAQVLSYVYQLKRWHPAHGPMPTLGDVSVEKGLADGEAGPDGKPTA
>NZ_CP046603.1|WP_157031070.1|3406775_3408854_+|flagellar-biosynthesis-protein-FlhA
MSSQASGGGFSLSSMGHAVKSGLATPIVVLAMLAMVIVPLSPLVLDALFTINIAMSLVVLLAVVYVRRPLEFSIFPSVLLLVTLLRLALNVASTRVVLLHGHQGPAAAGHVIESFGQFVIGGSFAVGIVVFAILTIVNFVVVTKGAGRISEVSARFILDALPGKQMAIDADLNAGLLSREDAKLRREEVRAEADFYGSMDGASKFVRGDAIAGLLILAINIIGGVLIGVLQHDMALKDAGTTYVLLAIGDGLVAQLPALLISTAVAMLVTRATREQEMGQAVTTQVLHPRALAVSAALLGLVGIVPGMPNLPFLTLAALLGFAAWKMHKRALSPKEDTPEAEAAATAAAQPELSWDELRPVEPLGLEVGYRLIALVDKHQGGELLARLKGVRRKLTQDLGFLIPAVHVRDNLELAPGTYRVLVHGVPIASGEIHPDRHLALDPGHVYGKIEGIPGKDPAFGLDAVWIQPSQRAQAESLGYTVVDAATVVATHLSHLVRERAAELLGHEEVQQLLATLAKASPRLVEDLTPKLLPLSTIVRVLQSLLAERVPVRQLRQIVEALLEHGPHTQDPALLTAAVRTALGRFIVQELNGLGAELPVYTLAPALERVLQDSVSGQGAALEPGLAERLHQNLSECVTRQEGRGEPAVLLVPGGIRSAIARLVRHSVPALTVLAYGEVPEDKRLRLVGAVG
>NZ_CP046603.1|WP_157031071.1|3408909_3411057_+|flagellar-biosynthesis-protein-FlhF
MRIKRFTAPDMRTALRMVRDEQGPDAVILSNRPTEDGIEIVAATDYDESLAQQALRAALPSMPAAPSPVASPVTPATVAAVPTMRTSQPAMDASRASISSEAEALRAAANTEEKTRFGSLAALLTKPSKSKPAWTAPSNDAPATDATQQADTRATVERIEMTQSEPAHATRVEVEREEPAVVALSAKAKAKVAESPIRGRAVFAIGDGTPVPTAPRASKDETRVAASLPPPDTSRFDAMMAALIPQGEKFEATAAALAQAAVAQEATRDSVTDPTRVAPTAAVVIGDAAPSLSAQAAEFEVPAALSATQVAASDPAHEYRSLADLWSDEAVLPSPVGRGIEGKGRNHDHGSDVAAAGGSASYVDLLTTHSVAPHPNPSPEGRGAEAAPTHLHAVADQRDPSFIAMRDELATMRALIERELGQLTVERLRGSPARAAAFDMLVGYGCDENLAQTIAGRIDARLDPAQVREPMLEELARAISVARHEPIDDGGVIALVGPTGAGKTTTAAKLAARFAQRHRARDVALVTTDTERPGATEQLHILGRRLGVTVCEAAGPEALNDALDQLADYPLVLVDTAGHGLRDRALLGQILWLRAAKRVRSLLVLPANTNAHDLGEVVRRYRPASPEGVVLTKLDETGRLGSPLSVLVQQGLSLAYTTDGQAVPTDIAAADATRLVSTLEKVRRAADNPLGSLELTQLKPRPVTLPTEDRHAFAS

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Crispr_ID: NZ_CP046603_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046603_10

3558428-3558541

Orphan

Consensus_repeat	Method
CCCCTCTCCCGCTCGCGGGAGAGGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046603_10

>merge|NZ_CP046603|10|3558428-3558541|CRISPRCasFinder
CCCCTCTCCCGCTCGCGGGAGAGGGGCCGGGGTGAGGGAGGCGGCCCGGCGCCTGGTCGAAGTCGACCACCCTCCCCCTCACCCCAACCCCTCTCCCGCACGCGGGAGAGGGGC

>NZ_CP046603|10|10|3558428-3558541|CRISPRCasFinder
CCCCTCTCCCGCTCGCGGGAGAGGGGC	CGGGGTGAGGGAGGCGGCCCGGCGCCTGGTCGAAGTCGACCACCCTCCCCCTCACCCCAA
CCCCTCTCCCGCACGCGGGAGAGGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046603.1\|WP_157031149.1\|3558684_3559233_+\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179262
NZ_CP046603.1\|WP_115844163.1\|3549733_3550306_-\|ATP-dependent-protease	unknown	unknown	gnl\|CDD\|225362
NZ_CP046603.1\|WP_157031141.1\|3546944_3547613_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|237032
NZ_CP046603.1\|WP_157031156.1\|3573051_3574035_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP046603.1\|WP_157031150.1\|3559316_3560306_-\|zinc-chelation-protein-SecC	unknown	unknown	gnl\|CDD\|377460
NZ_CP046603.1\|WP_157031767.1\|3550375_3551821_-\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|130153
NZ_CP046603.1\|WP_157031152.1\|3563547_3564474_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227311
NZ_CP046603.1\|WP_157031157.1\|3574031_3575351_+\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418
NZ_CP046603.1\|WP_157031153.1\|3564618_3567000_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226233
NZ_CP046603.1\|WP_157031147.1\|3555666_3556191_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_157031143.1\|3552010_3552589_-\|adenylate-kinase	unknown	unknown	gnl\|CDD\|234711
NZ_CP046603.1\|WP_157031146.1\|3554937_3555603_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369231
NZ_CP046603.1\|WP_157031144.1\|3552780_3554037_+\|diphosphate--fructose-6-phosphate-1-phosphotransferase	unknown	unknown	gnl\|CDD\|237600
NZ_CP046603.1\|WP_115844282.1\|3567331_3567997_-\|two-pore-domain-potassium-channel-family-protein	unknown	unknown	gnl\|CDD\|369572
NZ_CP046603.1\|WP_157031154.1\|3568124_3570002_-\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NZ_CP046603.1\|WP_157031145.1\|3554202_3554934_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_157031151.1\|3560453_3563285_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP046603.1\|WP_157031155.1\|3570517_3573055_+\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I	unknown	unknown	gnl\|CDD\|181856
NZ_CP046603.1\|WP_157031142.1\|3547735_3549745_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP046603.1\|WP_157031148.1\|3556389_3558417_+\|sodium-translocating-pyrophosphatase	unknown	unknown	gnl\|CDD\|234827

Protein	Function_ID	Function_description	E-value
NZ_CP046603.1\|WP_157031149.1\|3558684_3559233_+\|inorganic-diphosphatase	gnl\|CDD\|179262	PRK01250, PRK01250, inorganic diphosphatase.	1.34099e-113
NZ_CP046603.1\|WP_115844163.1\|3549733_3550306_-\|ATP-dependent-protease	gnl\|CDD\|225362	COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only].	3.90993e-34
NZ_CP046603.1\|WP_157031141.1\|3546944_3547613_-\|serine/threonine-protein-kinase	gnl\|CDD\|237032	PRK12274, PRK12274, serine/threonine protein kinase; Provisional.	1.15463e-118
NZ_CP046603.1\|WP_157031156.1\|3573051_3574035_+\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	2.21867e-96
NZ_CP046603.1\|WP_157031150.1\|3559316_3560306_-\|zinc-chelation-protein-SecC	gnl\|CDD\|377460	pfam05118, Asp_Arg_Hydrox, Aspartyl/Asparaginyl beta-hydroxylase. Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyze oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalyzing oxidation of a free alpha-amino acid. The structure of proline 3-hydroxylase contains the conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. This family represent the arginine, asparagine and proline hydroxylases. The aspartyl/asparaginyl beta-hydroxylase (EC:1.14.11.16) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins.	8.43502e-13
NZ_CP046603.1\|WP_157031767.1\|3550375_3551821_-\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	gnl\|CDD\|130153	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP046603.1\|WP_157031152.1\|3563547_3564474_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.09007e-15
NZ_CP046603.1\|WP_157031157.1\|3574031_3575351_+\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	1.42083e-180
NZ_CP046603.1\|WP_157031153.1\|3564618_3567000_-\|hypothetical-protein	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	1.21326e-25
NZ_CP046603.1\|WP_157031143.1\|3552010_3552589_-\|adenylate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	3.92051e-95
NZ_CP046603.1\|WP_157031146.1\|3554937_3555603_+\|hypothetical-protein	gnl\|CDD\|369231	pfam07148, MalM, Maltose operon periplasmic protein precursor (MalM). This family consists of several maltose operon periplasmic protein precursor (MalM) sequences. The function of this family is unknown.	0.000264553
NZ_CP046603.1\|WP_157031144.1\|3552780_3554037_+\|diphosphate--fructose-6-phosphate-1-phosphotransferase	gnl\|CDD\|237600	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase.	0
NZ_CP046603.1\|WP_115844282.1\|3567331_3567997_-\|two-pore-domain-potassium-channel-family-protein	gnl\|CDD\|369572	pfam07885, Ion_trans_2, Ion channel. This family includes the two membrane helix type ion channels found in bacteria.	0.000189401
NZ_CP046603.1\|WP_157031154.1\|3568124_3570002_-\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NZ_CP046603.1\|WP_157031151.1\|3560453_3563285_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	4.62621e-53
NZ_CP046603.1\|WP_157031155.1\|3570517_3573055_+\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I	gnl\|CDD\|181856	PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional.	0
NZ_CP046603.1\|WP_157031142.1\|3547735_3549745_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	4.85881e-42
NZ_CP046603.1\|WP_157031148.1\|3556389_3558417_+\|sodium-translocating-pyrophosphatase	gnl\|CDD\|234827	PRK00733, hppA, membrane-bound proton-translocating pyrophosphatase; Validated.	0

>NZ_CP046603.1|WP_157031148.1|3556389_3558417_+|sodium-translocating-pyrophosphatase
MLEQYGLVLALVCAVIAILYGIISARWIGAQPAGNERMQQIAGAIQEGARAYLNRQYTTIAIAGVVLFVLIGFFLGWATAVGFLLGAVLSGAAGYIGMNVSVRANVRTAEAARKGMSQAMDVAFRGGAITGMLVVGLGLLGVAGYYLVLQRMGFTGEHALHALVGLAFGSSLISIFARLGGGIFTKGADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMAADLFETYAVTVIATMLLGGLMLAEAGRNAVLYPLVLGGVSIIASIIGAFFVKVKAGGSIMGALYKGVIVSAVLAAIAFYPITTQLMGDNTHGAMNLYGCALIGLALTGAIVWITEYYTGTQYKPVRHVAAASTTGHGTNIIAGLGVSMKSTALPVVAVCVAIWLAFYLGGLYGIAIAATAMLSMAGMIVALDAYGPITDNAGGIAEMAELPPEVRNVTDPLDAVGNTTKAVTKGYAIGSAALAALVLFADYTHNLSAANPGRSFAFDLSDHYVIIGLLIGGLIPYLFGAMAMEAVGRAAGAVVEEVRRQFRQIPGIMEGTGKPEYDKAVDMLTRSAIKEMIVPSLLPVIVPIVVGLLLGPTALGGLLIGTIVTGLFVAISMTTGGGAWDNAKKYIEDGNFGGKGSDAHKAAVTGDTVGDPYKDTAGPAINPLIKIINIVALLLVPLL
>NZ_CP046603.1|WP_157031147.1|3555666_3556191_-|hypothetical-protein
MRVSPLLLLLFTLPALAATPRTDAKADAKPEIARGPVQPQAQGAVHTLRQIPEACARLEGMFTGQADDPYAFTVVRISPQCQPRARFVDAAKAKPAENGWVLNDLIRVPNAACPSQQAVVHIWRKPVDKTAKLDGQGQQRIYLEEQSQKAKAGKLDAIPMYAAQMQVEGKPCAP
>NZ_CP046603.1|WP_157031146.1|3554937_3555603_+|hypothetical-protein
MTMRIRMTTALACLLASGCSSIAYKAQMPDVSANCVDSLPAIAVSGTPLRFPAEGKKPDAKYLEFAQVARCYRSNDGAPRPVALYRLDAITPPAEVDVSVSLSTGGTFAAAVEVLDADFQPVRRYGFSDFVRRGSLYSLTLFLNPSGRAPAYLMLTPDDGQVGKSDTAVGSFTNVVSAPVAATGAVFMYSTGTETRTVSPFLQGGKVLVVARPQSSELPKL
>NZ_CP046603.1|WP_157031145.1|3554202_3554934_+|hypothetical-protein
MKWNPLRTLCALAFASILTGCVSMPKQQAFNRETHTTIKTIAVLETHETRPAVFMMNHPGANFGLIGGLIAAGDMASKEKKLNALIEQAQFQPLGYFRERLTVRMEERGYTLVWPQSQVEKTKASRGTFGLRKAYTGTQGADAQMDINFGFFGYAAAGAGDAAPYRPTATMAVRLVSPDGKQNYYTDYFAYNNVFNMRDAVAMNADPEFSYPGFDELQAAGPRSVDGLKLAIDSIASEIARQL
>NZ_CP046603.1|WP_157031144.1|3552780_3554037_+|diphosphate--fructose-6-phosphate-1-phosphotransferase
MPSGTLLYAQSGGVTAVINATASAVIQTARAHKVRVLAGRNGILGVLREELIDTSKEPAGVIRSLAHTPGGAFGSCRVKLKSLDQDRAKYERLLEVFRAHDVRWFLYNGGNDSADTALKVSQLAAEFDYPLTCVGVPKTVDNDLAVTDCCPGFGSVAKFTAVSVRECALDVAAMADTSTKVFVYEAMGRHAGWIAAAAGLAGNGEDAAPHLILFPERPYDEADFFAKVKATVERVGYCVVVASEGIQTADGKFVADAGGGKDSFGHTQLGGVASFLAGRVKDALGYKVHWALPDYLQRSARHLASKTDLDQAQAVGRKAVEFALKGMNSVMPVIVRTSDMPYRWKVEAAPLSQIANHEKKMPDDFIRADGYGITAPARRYLEPLIRGEAPPPYGRDGLPKYVSLKHTLVEKKLPPYAG
>NZ_CP046603.1|WP_157031143.1|3552010_3552589_-|adenylate-kinase
MRLVLLGAPGSGKGTQAARLKDHLQVPHISTGDLLRAEVAAGSKLGLEAKEIMASGNLVSDEILLGMLEDRFSRDDTKGGFILDGYPRNLAQAAALDQLLQRIGQPMDYAVQLEVPTEMLVERIAGRAKAEGRADDSPESVRRRLQVYNDQTAPVVDFYRQHGQLTVVNGVGSLDDVFTRIVEALAPAKEIG
>NZ_CP046603.1|WP_157031767.1|3550375_3551821_-|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase
MLKIHILGIAGTFMGGVAALARELGHDVEGSDQAVYPPMSTQLENLGIALKQGYTPDHISADCEQIVVGNALSRGNAAVEQVLDDGRRYTSGAQWLSENLLPGRDTLAVAGTHGKTTTTTILTYLLQAAGREPGFLIGGVAEDFGVSARVGQGREFVVEADEYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHHLVRTVPRRGRLIVNGEDAHLAEVLAMGCWTPVETFGLDASQIPASAGERSHGDRADDRSVARAAFDWIARLIEQDGSRFAVVHRGVELGEVTWPLLGRHNVMNALAALAAANAVGVGVAGVLGALSEFRSVKRRLEVIGQAQGVTIYDDFAHHPTAIATTLAGLRAKVGDARIVVAMEPRSNSMRLGAHSDALAPSLDLADTVVFLHRPELAWDAGKVVSALAHEGVAVPDADALIAALRERVRDGDHVVFMSNGGFDGAPRRFFAVLKDAAAR
>NZ_CP046603.1|WP_115844163.1|3549733_3550306_-|ATP-dependent-protease
MPQPLGLFPLHTVLVPGAALGLRVFEPRYLDLVRDCTRAGRGFGVCLIIDGEEAGAPASAAAYGTEAVIEDFDRGEDGLLTLQVRGTRRFHAHRVRVRDNGLQVADVNWCDPDPDDPLRPEHGLLGKLLEQIVEQIGGEHAKAPHSRFDDAAWVGWRLAELLPLENAQRQVLLQTDDPHARLDRLLALLP
>NZ_CP046603.1|WP_157031142.1|3547735_3549745_+|phosphatase-PAP2-family-protein
MEPAWIESATTWIAEHPVAAGAVIFLIAFCDAVVLLGIVVPALPLLFAVGALVGLGHISGPYALVCATLGAFIGDALSYWVGHRWGPQLRSRWPFSRYPQWLDRGEAMFRRHGVKSIFIARFVGAVRPFVPAIAGMLHMPLRRYALPSLVACIAWSALFLAPGWVLGRSYDAVAAVADRLALVLGALAVAVALVWAVVLYTWRWFADHADTLLARALRWTRQHPRLGPYAAALIDPNRPESPSLLMLAVCLLAISWAWFTLVASLLASGGPLALDHTIHDFMWSLRNPLADRLMAALACIGDASVLGPAVLVALAYLLWRKRWMAAAHFAAAIVFGLVFTSLLEAVIDMPRPPTAPAGFGFPSVAVTMSTIVFGFFAVLIARELPGRTRVWPYLLAGVITTLVAFSRLYLGAHWPSDLVGGTLFGVLWLLALGIAYRRHVQRSFWMRPLAWLFYGTFAIAALWHAPRTADTLLARFAAATPTSVMDAEAWWREGWSELPAQRNERDQRRRWPLDVQVAGSLDPLRERLEARGWHVQPQADWIATLGLLDDDTSASEQPVLPATLDAQAETLLMVHPGGSDDEEFVLRLWRAPVRLDDGTPLWIGTSQTLRLNKPLAVAALWLPVSDDGRAHAMVREALKDLDTAEDAHPHGDTPVLRVRTTTPANASGK
>NZ_CP046603.1|WP_157031141.1|3546944_3547613_-|serine/threonine-protein-kinase
MSSSSDDAIEVQALKADSFGRIALMRDDRGLFVRRDLRHVPLWLRVPAWWLARREARALQQVHGLHDVPQLLRWDGRRLDRSYMDGAAMYQRPPHGDLAYFRRARRLLQQLHRRGLAHNDLAKEANWLVLADGRPGIIDFQLATRGQPRSRWMRLLAREDLRHLLKHKRTYCPHALTPVERRVLKRHSWLREAWFATGKPAYRFVTRRILKWEDNEGQGPKP
>NZ_CP046603.1|WP_157031149.1|3558684_3559233_+|inorganic-diphosphatase
MGLDLVPTGKNPPDEINVIIEIPKDAEPVKYEVDKASGAIFVDRILSTPMRYPCNYGYVPHTLCGDGDPADVLVILPLPLVPGSVIRAVPVGVLKMSDEAGSDEKLIAVPVPKIFGGYSHITDIEQVSKHWLERIGHFFEHYKDLEKGKWVKIEGWGDAAEAKAILNDAIARYNAEEDKPKF
>NZ_CP046603.1|WP_157031150.1|3559316_3560306_-|zinc-chelation-protein-SecC
MKLQVPFIQLPMSFDAAALEAEIGALGEGPWKPHPQGFAGNSMLPLVAADGDPDNEAFAGTMQPTPHLLRCPYLTQVFASLGATVGRSRLMRLSGHAEVTRHADQGYYWAERVRVHIPVVTQPTVRFECDSAVINMAAGECWIFDTWRQHRVLNDAVQSRVHLVVDTVGGGRFWDLVNHGRPHDAPRTGWQNVRIAPKPGEVASFACERVNVPVVMSPWELNDHLGLLIGDAVPHPNLPQVRQIAMRFSRQWQGLWFEFGEREEGRARYAAALQRFLDDIRGPSQPMVLKNELRWFNALMTIVGKFAVSDAASQAPATAARQREVGDNA
>NZ_CP046603.1|WP_157031151.1|3560453_3563285_-|TonB-dependent-receptor
MNHRNLRTAMRVGMLPAGIAIALAPAFAVAQEGGEQQATTLDRIEVTGSRIKRADVETSQPIFTLTRAEIQKQGVTSVADVLQRISTNGAALNTTFNNGGDGSSGISLRNLGEGRTLVLVNGRRWTQGLGGSVDLNTIPAAMVERVEVLKDGASTIYGSDAIAGVVNIITRQNFEGAEAGAYLGQYSQGDGNREAYDFTIGTGSDRGNVMIGASYVKEDAVMAGDRKISAGGPPFFGGQSGTGFPGSFVDPSDDTRYVLDSSGNPVPYVSSVHGYNTAPDNYLLTPQERTSLFAQANYDITDNFRFKTEMLYNERISEQLLAAMPVTGMTLDAQSYYNPTNPDGQYGNVLGGTARDLIGVNRRFQESGGRSFNQNVKNWHFYGGFEGFFEIGDRSFDWDTGYRYDRTDENDLTYGLFNLANLESAYGPSFLDADGVVKCGTPGDVIAGCVPVNALGPNGAISQEAIDYTAFTAHDSSRVTSKSYYANVSGDIVDLPAGPLAFAAGYEHRTEDGQYDPDAFIAAGLSTGNGSKPTAGGYKLDEYYLELAVPVLADLPGAKLLDFSLATRYSDFSNFGNTLNSKFGFRWKPIDDLMVRGNWSEGFRAPTINNLYAGDSDSFESYIDPCSTHSGMRTGQTAQLCDAQGVPANFEQPGDGSSRQTLEPFTWSSNENLQPETSTTRTLGFVYNPSWLEGFDISLDWWKIEIENAISRPEAQFILDKCYAGTPGEQAIYCGLFSRDPNYPGDPNIITQLEMPLLNLAEYNVEGWDMTVNYKFPETSFGKFSVTWDSTYTSNWSTKATADSAEEQRQGLYLPQDPYWRIKSNLYLDWTMGDWGATWGMRYKSGLDESCPYAGGSTNAEAYCSDPDRVTADGPAPRNHLGATTYHDMQVRYNTPWNATVSVGANNVFDKEPPLSLRAPYNQFDPQYDLPGTYYYVQYRQRF
>NZ_CP046603.1|WP_157031152.1|3563547_3564474_-|helix-turn-helix-domain-containing-protein
MEQVQWADRGQLLQLETPEGAVQGGCIGVSRLGSVQSSGGFSFWLQLHGSSWVEAKEGKFRLRSGDWIAFEKDSKPTVQADRFGVCVGLTLTGEALREMTRFADRGLYAGRGQMSRHDARIGLRLWREAAARLAENPGAGFDASLLRPILLHLAGVQRDLAARIPRCPGRSRSRKRQVFGRLQRARLYLEGNCDRVVRISELAELTSFSSWYFSKTFHSLYEESPQAASARMRLEHAADLLTSTSMMIGEVAAASGFDNCCSFARAFRARFGVSATRYRAAAATRGEPGKAQAAARKSLERKSLATNG
>NZ_CP046603.1|WP_157031153.1|3564618_3567000_-|hypothetical-protein
MTAVQLAAHHFGFMQRTLEPSTPPLPSERLRVGECVVDVPLREIRAPGKRRPLRITPKSMGVLLVLVEQAGRVVSRDSLMTEVWPDTLPTNDVVTQAITQLRKAFDDERGNPRYIETIAKNGYRLLAPIEWIHTGGPAASADVVASDERWSDPTRTTAKYPAIAGADPSEPLAPVPFPASSTPRGTWTSIASVIFVVALLVAGLVAWALIRAPAQPEVAPVAVTGMQGLRSERPYRLITSAPGFELSPALSPDAGLVAYVAIPEGQRGTAIMVQTTEQTQPRQLTRPPEGTDDASPVWSPDGRWIAFMRLSESSCSIRLVTPNARAEHEVGVCDRRSPPTFDWTPDSNGLIFGSMSTDQGTVGLRVLNLDSGQWRPIEYPHDPDELDTDPRYSPDGRWIVFVRNAPLGDFWRIPAQGGNAERLSRLRADLRGWDWSPTGRGLIFSAMVDGEYRLFRLDTSTGEARQMGVDDGQAPVAARSRHAIAFVQRRPYFGLYRVQLTDGDGPGRVHVVEPLFASAARDLLPSIAPDGRQLAFVSDRSGSNGLWVGDVSQPDTLRMMGGVRPGTRYAPAWSPDSRRLLATGIDAQGRGVVQEVLAASGQVSTLSVPDAEPLQAQYSVDPNRLFVLAASEEGAPQLRLYDRSATPWRVLGRIDGVSHFEVDGARNRVLFTRLTEAGLWEAPLDLGAASVRQVSASVPTADRYRMWTVAPDGEIRYLERLQDCAASLRRIVPADPAPPRCLDQLRRSAVNGFSLGGPRNEAAYLALVDWDGADIGYMELPKETTEVVPGWVK
>NZ_CP046603.1|WP_115844282.1|3567331_3567997_-|two-pore-domain-potassium-channel-family-protein
MLRWRVQARRHPSAFLLAAQLLSLILYPIFDETRSSGRVLFGALGVVVLMLAVWVVNRSPAKVWVAWLLAAPALGLSVLSVVLANDTLLVVSSALEALLYLYAASSLIAYMLGDHRVTADELFAAGATFTLLAWGFAYAYFVCQAWYPGSFTGALRPGEPRTWLELLFLSFTTLSATGLGDILPLSSPARVLVMLQQFAGVAYIAVVVSRLVGLTMLRATK
>NZ_CP046603.1|WP_157031154.1|3568124_3570002_-|phosphomethylpyrimidine-synthase-ThiC
MNAVPSQLIQQAEQLSADVTRPIPGSHKIHVEGSRPDIRVPMREIVLAKTPTMFGGEENAPLAVYDTSGAYTDANAQIDLARGLAPLRAEWIAERGDTGVLSELSSEFGRRREHDPKLDAVRFRNRPMPRRALSGANVTQMHYARRGIVTPEMEFIAIRENQRIEAIREAHLLRQHAGESFGANIQKLITPEFVRDEVARGRAIIPNNINHPESEPMIIGRNFLTKVNANIGNSAVSSGIAEEVEKLVWSIRWGADTVMDLSTGKHIHETREWIIRNSPVPIGTVPIYQALEKVDGRAEELNWEIFRDTLIEQAEQGVDYFTIHAGVLLRYVPLTAGRVTGIVSRGGSILAKWCLAHHKENFLYTHFEEICEIMKAYDVAFSLGDGLRPGSIADANDAAQFGELETLGELTKIAWKHDVQTMIEGPGHVPMQLIKENMDKQLRECGEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWFGTAMLCYVTPKEHLGLPNKHDVREGLMAYKIAAHAADLAKGHPGAQARDNAMSKARFEFRWEDQFNIGLDPERAREYHDETLPKDAHKVAHFCSMCGPHFCSMKITQDVRDYAKEHGVDEEAALSEGMAEKSAEFRAQGAQVYRKA
>NZ_CP046603.1|WP_157031155.1|3570517_3573055_+|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I
MPPADASRPSAPPCHVHKFGGSSLADASLYRAAAALVDDPSRTRVVVVSAMQGVTDALIALLETAQRRDAWHPAFHALRERHANAATALDPDGHFALQPALDAEFETLRRHLDAIGAGEADAAVLAAGLPGFGEVFSSHLMHVALGGDAASWRRLDARDVLVVHAGEMGMAVDWPESRARLAKWRAGNAEGNVVITGFVARDAQGHATTLGRNGSDYSAAIFANLFDADALTIWTDVDGVLSADPRLVPEAVCLPSMSYAEACELAYFGAKVLHPQTMAPVQERGIPLWIRNTKRPEAPGTLIAPDSGRDGTPVKGLSLVRDLAIVELVGNGMVGVPGAAERLFGALRGAGVSVTMISQGSSEHSICCVLRADQAERARDAAAAAFADAIADGQAQGVTLTRDIAVLAAVGDGMVGTPGVAARLLGGLAQARVNARAIAQGAGERNISVAIGANDATRALRAAHAAFWLSPQTLSVGVIGPGQVGTALLVQMSAALPQLRQRSGLDLRLRAIANSRAMVLDERGVEPADAAARLEGGAAQPVDLERFADHVRGEHLPHALIVDCSASPRVAAQYPRWLARGIHVVTPNKQAGSGAWDHYAAIQDASRRGGGRFRYEATVGAGLPVMLTLRNLLDTGDELHGIDGMLSGTLAWLFNRFDGTVPFSQLVREAQALGYTEPDPRDDLSGLDVARKLVILAREAGRALSLEDVDVENLVPPALREVGREEFLARLAEMDEPMLARQRDAARKGRSLRHLAQLDRDGVARVGVVALPAEHACCHTRLTDNIVQFRTRRYSENPLVVQGPGAGPDVTAAGVFGDVLAIAQSLGVSSTWSSPPVEARVEVNA
>NZ_CP046603.1|WP_157031156.1|3573051_3574035_+|homoserine-kinase
MSGDIDAQRNATRPRIARAFAPGSVGNIGVGFDLLGHSIDGVRDVAIVRRIEEPVVRIAAIRGDVEGADTLPLQAERNTAGQALIALRDKLGLAHGFELELEKGIPLGSGLGGSAASCVAALVAANAVLDAPLAREALYDFALDGESVSSGSRHGDNVAPMLLGGVVMATATRMIPLDVPSWLHAVVVHPDQVLETRRARAVLADPYPLHVVVEQSAHLALFLTGLQRGDATLLREGLRDLLVEPRRAPLIPGFAEAKAAALDHDALGASISGAGPSTFAWFASRAQADAAAPAMQAAFASAGYGSRAYVTPVAGPRADVISAGAYA
>NZ_CP046603.1|WP_157031157.1|3574031_3575351_+|threonine-synthase
MKFVSTRGNTPPTQIDAALVAGLAPDGGLYVPERIPAVDIEPVDTLAQTAQAVLSPYFVESSLRDALPAICAHAYSFDAPLRAMTGDGDHLLELFHGPTAAFKDYAARFLAEALSRLRPSDAAPTTIVVATSGDTGAAVASAFHRRDGFNVVILYPEGRVSPRQAHGLECWGDNVRTFRVQGTFDDCQRMAKQALSDEALRREVSLSSANSISLGRLLPQVAYYAHAALHFARRHGEALNLIVPTGNLGNACAAFVARRMRLPIGDLVLACNANDVLPRYFAGDPYEPRATTATLASAMDVGAPSNFERLRHWHTGDDELRGSLRAFTVDDATITDVVREAPRRHGVVADPHTAAGLHVLETFRSRGDSRPWAVVATAHPAKFDTIVEPLVGHEVPVPPSLAQCLARPASAQRLPADYAALRDALRTGAVTSETIGPST

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Crispr_ID: NZ_CP046603_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046603_11

3755796-3755886

Orphan

Consensus_repeat	Method
CGCGGCACTGCCGCGTGGCCTGCCGAACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046603_11

>merge|NZ_CP046603|11|3755796-3755886|CRISPRCasFinder
CGCGGCACTGCCGCGTGGCCTGCCGAACGCACGGTTATGGATGGGTGAGGCAGGCCGCCTACGCGGCACTGCCGCGTGGCCTGCGGAACGC

>NZ_CP046603|11|11|3755796-3755886|CRISPRCasFinder
CGCGGCACTGCCGCGTGGCCTGCCGAACGC	ACGGTTATGGATGGGTGAGGCAGGCCGCCTA
CGCGGCACTGCCGCGTGGCCTGCGGAACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046603.1\|WP_115841945.1\|3758095_3758530_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP046603.1\|WP_157031267.1\|3752892_3753180_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_157031269.1\|3754439_3755666_+\|RtcB-family-protein	unknown	unknown	gnl\|CDD\|376465
NZ_CP046603.1\|WP_157031275.1\|3763539_3763731_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_115841944.1\|3757630_3757957_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_115841943.1\|3756903_3757476_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236608
NZ_CP046603.1\|WP_115841939.1\|3747761_3748022_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_157031274.1\|3762143_3763433_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340897
NZ_CP046603.1\|WP_157031262.1\|3745200_3745869_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|223710
NZ_CP046603.1\|WP_157031263.1\|3745865_3746573_-\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211327
NZ_CP046603.1\|WP_157031273.1\|3761404_3761836_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379323
NZ_CP046603.1\|WP_157031272.1\|3759463_3761137_-\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349910
NZ_CP046603.1\|WP_157031268.1\|3753254_3754382_+\|slipin-family-protein	unknown	unknown	gnl\|CDD\|259816
NZ_CP046603.1\|WP_157031264.1\|3746569_3747628_-\|methyltransferase	unknown	unknown	gnl\|CDD\|225370
NZ_CP046603.1\|WP_157031266.1\|3750569_3751271_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP046603.1\|WP_157031265.1\|3748062_3750573_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|225669
NZ_CP046603.1\|WP_157031271.1\|3758629_3759247_+\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238496
NZ_CP046603.1\|WP_115841951.1\|3763810_3764584_+\|aminotransferase-class-I-and-II	unknown	unknown	gnl\|CDD\|270694
NZ_CP046603.1\|WP_157031786.1\|3751455_3752067_+\|arylesterase	unknown	unknown	gnl\|CDD\|238860
NZ_CP046603.1\|WP_157031270.1\|3756385_3756907_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP046603.1\|WP_157031269.1\|3754439_3755666_+\|RtcB-family-protein	gnl\|CDD\|376465	pfam01139, RtcB, tRNA-splicing ligase RtcB. This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.	1.43878e-176
NZ_CP046603.1\|WP_115841943.1\|3756903_3757476_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236608	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional.	2.87765e-32
NZ_CP046603.1\|WP_115841945.1\|3758095_3758530_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	6.64367e-31
NZ_CP046603.1\|WP_157031274.1\|3762143_3763433_+\|MFS-transporter	gnl\|CDD\|340897	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli 2-nitroimidazole transporter (NIMT) and cyanate transport protein CynX, and similar proteins. NIMT, also called YeaN, confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The NIMT/CynX-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.62483e-105
NZ_CP046603.1\|WP_157031262.1\|3745200_3745869_-\|HAD-IA-family-hydrolase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	2.55972e-53
NZ_CP046603.1\|WP_157031263.1\|3745865_3746573_-\|pseudouridine-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	6.27099e-73
NZ_CP046603.1\|WP_157031273.1\|3761404_3761836_-\|PepSY-domain-containing-protein	gnl\|CDD\|379323	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain. This region is likely to have a protease inhibitory function (personal obs:C Yeats). The name is derived from Peptidase & Bacillus subtilis YPEB.	3.62252e-08
NZ_CP046603.1\|WP_157031268.1\|3753254_3754382_+\|slipin-family-protein	gnl\|CDD\|259816	cd13438, SPFH_eoslipins_u2, Uncharacterized prokaryotic subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes a subgroup of the stomatin-like protein family (SLPs or slipins) that is found in bacteria. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Bacterial SLPs remain uncharacterized.	9.69832e-102
NZ_CP046603.1\|WP_157031264.1\|3746569_3747628_-\|methyltransferase	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	1.45731e-74
NZ_CP046603.1\|WP_157031266.1\|3750569_3751271_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.52291e-105
NZ_CP046603.1\|WP_157031265.1\|3748062_3750573_-\|FtsX-like-permease-family-protein	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	0
NZ_CP046603.1\|WP_157031271.1\|3758629_3759247_+\|isochorismatase-family-protein	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	7.95368e-53
NZ_CP046603.1\|WP_115841951.1\|3763810_3764584_+\|aminotransferase-class-I-and-II	gnl\|CDD\|270694	cd05124, AFK, Catalytic domain of Actin-Fragmin Kinase. AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating actin polymerization. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.63373e-06
NZ_CP046603.1\|WP_157031786.1\|3751455_3752067_+\|arylesterase	gnl\|CDD\|238860	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.	1.43795e-84
NZ_CP046603.1\|WP_157031272.1\|3759463_3761137_-\|M28-family-peptidase	gnl\|CDD\|349910	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.	1.3087e-100

>NZ_CP046603.1|WP_157031269.1|3754439_3755666_+|RtcB-family-protein
MNTQHASFDLLHAEGATTPIKGWTHGVPVEDQARQQLRNIATLPFVGPWVAVMPDVHLGIGATVGSVVPTKGAIIPAAVGVDIGCGMAAVRTTLRADDLPDDLSLLRNSIERSVPVGNGPGGEHRRIPDSVETALEKSNLVARLAKIRQKHPKIRPDKLDRQIGTLGGGNHFIEICLDEADRVWVMLHSGSRGTGNLIGTYFIELARRELEKRVLGFHVPDRDLAFFLEGEPLFDEYVEAVSWAQDYARANREAMMARVLHEMRHRLPKFQTEKSAVNCHHNYVQREDHFGESLLVTRKGAVSAREGELGIIPGSMGARSFIVRGKGNADSFHSCSHGAGRVMSRTAARARITLKEHREATAHVECRKDAGVIDESPAAYKDIDAVMAAQRDLVEIVHTLRQVVCIKG
>NZ_CP046603.1|WP_157031268.1|3753254_3754382_+|slipin-family-protein
MFWTKKVVIGDGERGLVYRNRQFEGVIAPGVHTWFDPFGAVEVKVHNIALRAEYLGSDENALIDALGTRLADTFVLADIGVGEVGLVMKNGRLEEILAPGSRRLYWKGPIAIEVRTLALQDEPDVPTDVATRLRQLGVLEKVAVVLPVPAEFAGLVFIDGKLARVVGAGSYAFWNFRKNVVVQAVDLRVQSLEVSGQELLTRDKVSLRVNLAASVRIVDPVAAITKVGKYADYVYRELQFGLRKAVSAKTLDELLGDKASLDADIFGYVRGRVGEVGVELLGVGVKDVILPGEMKEILNSVVQAEKSAQANVIRRREEANATRSLLNTAKLIEESPVLMRLKELEALEKVTEKIDKLTVFGGLDGVMKQLVSLKQ
>NZ_CP046603.1|WP_157031267.1|3752892_3753180_-|hypothetical-protein
MASGESAATQEKVGNAPDAESAEHVALDAFDAMATWIASQADIACERTRAASARMREGGGPADPPLRYSDRIRMKPDATRNAARGVSDEGTFVPM
>NZ_CP046603.1|WP_157031786.1|3751455_3752067_+|arylesterase
MLAVAFPAAAQAAKAAPATQPARTVLVMGDSLSAGYGLAASQGWVSLTADRIAKTKPGWRVVNASISGETTAGGAARIDGELKRNKPAVVVIELGANDGLRGLPLTQSRANLDRMITASKKSGAKVLLIGMRMPPNLGREYTQGFSDNYSALAKQHGIALLPFLLEPIATDRTAFQDDNLHPVASAQPKLRDHVWTQLAPLLR
>NZ_CP046603.1|WP_157031266.1|3750569_3751271_-|ATP-binding-cassette-domain-containing-protein
MADSIAPRTQAQAALQVAALGKRVMLPSGELVILDDVSFDIAPGDTVAIVGASGSGKSTLLSLLAGLDTPSSGRVVVDGETLSTLDEDGRARVRGEKVGFVFQNFQLLPSLTAVENVMLPLELRGDREVDAPARAILEKVGLGQRLNHYPRQLSGGEQQRVALARAFVTRPSLLFADEPTGNLDTHTGQAIIELLFELNAHAGTTLVLVTHDEHLASRCGRLLRLESGRLVAS
>NZ_CP046603.1|WP_157031265.1|3748062_3750573_-|FtsX-like-permease-family-protein
MSRTSGNTFGLAWRQLRRDLAAGDVRILIAALVLAVLAVTAVGFVTDRAERALAIEANRLLGGDAVVRADSPITGAVRQAANASQLQRTETIELQTMIRVGERLQLGDLRALGEGFPLRGAFRINGSDGVERDAGSVPARGTIWMSRAGADKLGAKPGDQIALGDAQFRLAALVVQEPDAALDYFNVAPKVFLNLADVPSTGLVQEGSRIRYRLVVAGPAAAVETFVAKAKPALGRGQRLETIADARPEIRSALDRAGRFLGLAALVSVVLAAVAVAMAARRHSARHLSGTAVMRCLGASQRTLVGIQVGELLMLGVIASTIGVLLAFALQWAIGGWLAQALKLSIPPAGLMPALQGYGVGLVVLMAFGAPPVLALRRVPALRVLRRDLDPTEPSAWLVGIAGFVGLAALLWWKAGSAALGLSMLAGIAATLLVLALLAWALILVVRRVRSRLRGSLRYGLANVSRRAGTSIAQVSALGLGLMALLLLTFVRTDLLDRWQLALAADAPNRFIINVQDDQVDAVRAFVAEQGVAAPTLYPMIRGRLTAHNGKPVTGKDYEAQGERAQRLAEREFNLSVADHLRDDNRITEGKFWTGKPAKPEASVEEELAKRLGWKIGDRIAFDIAGQPFEATITSLRSVEWESFRPNFFVIASPGSMDGLPASHITAVSVPPERTRFTADLVARFPNLSVIDIDAVLKQVRSTADQVSTVVEVVFYFSLVAGLLVLMAAVSASQDERLLEGGVMRAIGGSRRQLRLAQASEFVAIGLLSGLTAAIAASLLAGVVATQVFDLPWEADWRMAAVGAVAGVLAALLAGMFATRRVLDAPPSVTLRELQG
>NZ_CP046603.1|WP_115841939.1|3747761_3748022_+|hypothetical-protein
MRALFVGGTVDNSELDIDGAEPPLHYPENTGGGRPRYRLHQIGVRDGEIAYAVYGAPELATEEVDRVVEERDYARRFSARPQPVMQ
>NZ_CP046603.1|WP_157031264.1|3746569_3747628_-|methyltransferase
MRAEDGDDALETLFLPFIDGTLAWPSDGALFLRARDGWPLHQRAWPGLRCEQSFRPAADALERSGLSLAEEDETSRVPLVLVLPPRQRDESRALFARAIARCAPGGRVVACVPNNEGAKSAEADLARIAGPVGNLSKNKCRVFWTAPLDGPADANLAAQWAQADAPRPIADGRFVSRPGVFAWDRIDAASRLLADHLPHDLAGHATDLGAGYGYLTTELLARCPGIRAVDLYEAERRALDLARVNLAPFAERVALQFHWHDVTRGIDDRFDVIVCNPPFHAQGRGDRPDIGRRFIAVAAQALKPGGRLWLVANRHLPYEAELDAHFGNVRTVAQEGGFKIVDATKSREGRTA
>NZ_CP046603.1|WP_157031263.1|3745865_3746573_-|pseudouridine-synthase
MKLVKLIANLGYGSRKDVAAMFREGRITDAQGEVLYADDKVGHDAIRIDGEPLDPPAGMTLMLHKPIGYTCSTKDPGRVIYDLLPLRFRARSPLLSSVGRLDRDTSGLLLMTDDGALLHRIVSPKAKLAKVYEATFAHDLRGDEGEVFASGTLMLESENTPLAPAALEVHDARHAALTLTEGRYHQVRRMFAAVGNHVDALHRSRIGGLSLGDLSAGKWRMLDAADLNALFGGAA
>NZ_CP046603.1|WP_157031262.1|3745200_3745869_-|HAD-IA-family-hydrolase
MTLDFTPAAVLFDMDGLMIESERALLQCWREASQELELELEDALWLSFVGLSDRACHALLLERLGDEALLKSLLHGLQVRYDAHVEAGLPVKIGVLELLALLEERGIPRAVVTSTRRERALQKLTTTGLLPHFHDVIAGNEVQHTKPAPDIYLLAAQRLGVPPSECVVLEDSVPGVRAALAAGMTPIQVPDLVIPDDAVRALGHRIVDSLVHARALIEPALR
>NZ_CP046603.1|WP_157031270.1|3756385_3756907_-|hypothetical-protein
MNTPDDRKPGSEDPPIHRTGWRGIDALRLEAEWQAQEHALEQERRGQPLDPADSRLAEYRLIARALRTPAMEPVPYDLAAQIVRHVEGMPAAGELFERWLLRVLTAIFAIAVIAVVAAYGAQWMPAFASLWPSLSPQSADWAGLLVGCLAVSLAWQGVVRLMRADEEMPAGLA
>NZ_CP046603.1|WP_115841943.1|3756903_3757476_-|sigma-70-family-RNA-polymerase-sigma-factor
MTEDDRRLVDAVLGNVPGAFERLVREYQGLCWHIIQRMVRQPEDTRELCQEAFLRVHQCLHQYRGESALKSWIGQVAYSVAKRHLEKRRIAIAEPVGDEDDGVSLLDQLSDGFDLETACADAEIAAGLHEEIESLPPLQRTLLTLYHLDEVPIVEIARITGLAEGTIKSHLFRTRARLRERLQARMGVTA
>NZ_CP046603.1|WP_115841944.1|3757630_3757957_+|hypothetical-protein
MNFEILIPITLFICVVYAIKVVVDARTRAKLIASNGSEDLIRSLVQAEALQRRHASLRWGILLLAVGLGFALIEAFGWTEITPGVVAVLLGVTGLGNLAAYAASRKLG
>NZ_CP046603.1|WP_115841945.1|3758095_3758530_-|Lrp/AsnC-family-transcriptional-regulator
MKHLDAIDRQLIALLQDNARLSTVALAKAVGLGRTTVQERLQRLESAGVIAQYTVRLGSGGDPLQAWLMLRYADGFSCDDVMPQLTAMPQVRLCHSVAGELDLLVLVQAESPGELADLRERVAAIKGVDDVTTVPVLRTTLDRR
>NZ_CP046603.1|WP_157031271.1|3758629_3759247_+|isochorismatase-family-protein
MNAPRSTLELDTRSALIPIDVQCGFDLPPWPPRNNPAMEANALRMLDAWRRAGLPLIHVRHDSVMEGSVLAPGHPGNAHRPGFVPLEGEPLVSKSVNAAFIGTDLDLRLRRLNVDTVVLFGISTDMCVSTTARVAANLGYRTIVIGDACACFDLKDADGSVIPADAIQRAHLATLRAEFAQVVESDAVIEALKPLSQRRPKGVQS
>NZ_CP046603.1|WP_157031272.1|3759463_3761137_-|M28-family-peptidase
MKLPAVSLLALSLSLALNPAVAGKPAATDIDPARLSQDVKVLSSDEFEGRGPATAGETKTIDYVVAQMKAAGLQPGGDLKDGKREWTQAVPLARAEIKGTPTISVAVKGKTQALTQGEQIAVRAAQDGSTAVDISKAPLVFAGYGVSAPERGWDDFKGVDLKGKIAVVLINDPDFDGGEGDFGGKAMTYYGRWTYKYEEAARQGALGLLIVHETDPASYGWATVKNSNTNTMFDVVRDKPASVHPKLEGWIQRDFAQQLFKQSGLDFDALKAQAKTKAFKPVELKGATLSAKYDVDRQIITSHNIVGRIDGTKRPDETVIYSAHWDHLGVGQPDAKGDKIYNGAVDNATGTAALIEIGRAFAKAPTKPERSVVFLAVTAEEKGLLGSEYYASKPLYPLGKTVAVINMDALDPHGPARNFTTSGSAKQELLDELIDTAKKVANLDYVTDPKPEAGHFFRSDHFPFAKRGVPAVSFGSGNDLVDGGLEAGKKMEDAYVADRYHQPADEWEADWTFLGMARDLGLLYTVGRNLADSDRWPNWDASSEFRAARDQTAGDRK
>NZ_CP046603.1|WP_157031273.1|3761404_3761836_-|PepSY-domain-containing-protein
MKKTIVLTALLSLSTVAFAQDAKPAAPLTEAQVRARLTEQGYTKVNDVKFEDGVWKADAHSAQGDSVDVRLDAKTGQVYPDKQVANLSEADVRARLSAEGYTNVHDVDFEDGIWNAEADDPSGKDVELKIDPATGKVIGKEKD
>NZ_CP046603.1|WP_157031274.1|3762143_3763433_+|MFS-transporter
MNADSLAAPLVRPLWRDRALVLAGIAMSAFNLRTAVTSLTPLLDTLGDTFGFGPTMTGVLGMVPTAAFAVFGVVTPAIAHRLGLERTALLAMALAAIGLFVRAFVGDTAMLLVTSAIALSGMGMGNVVLPPLVKRYFADRVGTVSTLYITVLQLGTILPALLAVPIATAAGWRVSLGAWSLVAAAAALPWIGVLWMERYGQSRQAKALCQAHDEAVASGDPAPELDGAKDGANGSARGRVWRSPVAWGLTLMFGMTSLTTYSMFTWLPKLLTEAGGSHALGGTMVALFSTMGLLSALFLPALAVRIRNPFPIVVACGASYIAAFAGLLLAPMAAPLLWVAFLGLGPSTFPLSLTLINLRTRTPGGSSRLSGFVQGVGYSLSCLGPLLFGWLHEATHGWEWPFAFLTLCLLALLYGGWLASRPRMLEDTW
>NZ_CP046603.1|WP_157031275.1|3763539_3763731_+|hypothetical-protein
MGQRHVENDPNTSGKSEREYEHSSGDRNTKKSENDWQGFSGGKQRDATPGAPGTPPAKDADRR
>NZ_CP046603.1|WP_115841951.1|3763810_3764584_+|aminotransferase-class-I-and-II
MTLRTVNVARYVTPLREGGSLPAIVEGDDDGLYVLKFRGAGQGVKALVAELVAGEIARKLGLPIPELVFVELDAELARTEPDPEIQELIKASDGLNLALDYLPGAINFDPVAERVPGALASDIVWFDAFTSNVDRSFRNPNLLVWHRNPWLIDHGAALYFHHGWDGSPTHAGSAFPMIREHVLLPQADDIAGADARLSGKLTRGDFDAILALVPDAWLVGADTPADPTEHRAAYVEHFMQRLAQRQRFVEEAIHARA

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Crispr_ID: NZ_CP046603_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046603_12

4018763-4018882

Orphan

Consensus_repeat	Method
AGCGCTGTGCGGCAAAGGTCGTTCGCCGTTGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046603_12

>merge|NZ_CP046603|12|4018763-4018882|CRISPRCasFinder
AGCGCTGTGCGGCAAAGGTCGTTCGCCGTTGACGCTTCGTTGCCCCTCACCCCAACCCCTCTCCCGATGGGAGAGGGGTTAAAACGAGCGCTGTGCGGCAAAGGTCGTTTGCCGTTGACG

>NZ_CP046603|12|12|4018763-4018882|CRISPRCasFinder
AGCGCTGTGCGGCAAAGGTCGTTCGCCGTTGACG	CTTCGTTGCCCCTCACCCCAACCCCTCTCCCGATGGGAGAGGGGTTAAAACG
AGCGCTGTGCGGCAAAGGTCGTTTGCCGTTGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046603.1\|WP_157031427.1\|4015286_4016183_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_157031429.1\|4018983_4019262_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_157031430.1\|4019546_4020797_-\|heme-biosynthesis-protein-HemY	unknown	unknown	gnl\|CDD\|225613
NZ_CP046603.1\|WP_157031433.1\|4022719_4023226_+\|thioesterase	unknown	unknown	gnl\|CDD\|370533
NZ_CP046603.1\|WP_157031437.1\|4025998_4026637_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275096
NZ_CP046603.1\|WP_157031423.1\|4008893_4009634_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236634
NZ_CP046603.1\|WP_157031422.1\|4006203_4008897_-\|fimbria/pilus-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NZ_CP046603.1\|WP_157031432.1\|4021912_4022674_-\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|181558
NZ_CP046603.1\|WP_115843277.1\|4023254_4023680_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_157031428.1\|4018072_4018630_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_157031426.1\|4011618_4014438_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsB	unknown	unknown	gnl\|CDD\|235325
NZ_CP046603.1\|WP_115843272.1\|4024375_4024888_+\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|180234
NZ_CP046603.1\|WP_157031424.1\|4009713_4010253_-\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP046603.1\|WP_157031431.1\|4020876_4021851_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225507
NZ_CP046603.1\|WP_115843274.1\|4023752_4024190_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP046603.1\|WP_157031435.1\|4024900_4025929_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_CP046603.1\|WP_157031421.1\|4005080_4006172_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP046603.1\|WP_157031420.1\|4004857_4004998_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_157031425.1\|4010611_4011595_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046603.1\|WP_115843283.1\|4016339_4017617_+\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|236440

Protein	Function_ID	Function_description	E-value
NZ_CP046603.1\|WP_157031422.1\|4006203_4008897_-\|fimbria/pilus-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP046603.1\|WP_157031431.1\|4020876_4021851_-\|hypothetical-protein	gnl\|CDD\|225507	COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism].	9.29831e-13
NZ_CP046603.1\|WP_157031437.1\|4025998_4026637_-\|hypothetical-protein	gnl\|CDD\|275096	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family. This family consists of proteins closely related to Ax21 (Activator of XA21-mediated immunity), a protein that is secreted by a type I secretion system (RaxABC), and that appears to be sulfated on an N-terminal region tryosine in a motif LSYN. Ax21 acts in a quorum-sensing system. Homologous peptide-mediated quorum-sensing systems appear to exist in other species, such as the emerging opportunistic pathogen Stenotrophomonas maltophilia. Intriguingly, the rice genome encodes a receptor (XA21) for this protein that triggers innate immunity. [Cellular processes, Pathogenesis].	4.02573e-17
NZ_CP046603.1\|WP_157031423.1\|4008893_4009634_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236634	PRK09926, PRK09926, fimbrial chaperone.	1.56984e-81
NZ_CP046603.1\|WP_115843274.1\|4023752_4024190_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	5.44804e-27
NZ_CP046603.1\|WP_157031433.1\|4022719_4023226_+\|thioesterase	gnl\|CDD\|370533	pfam09500, YiiD_C, Putative thioesterase (yiiD_Cterm). This entry consists of a broadly distributed uncharacterized domain often found as a standalone protein. The member from Shewanella oneidensis is described from crystallography work as a putative thioesterase because it belongs to the HotDog clan of enzymes. About half of the members of this family are fused to an Acetyltransf_1 domain pfam00583.	4.23689e-42
NZ_CP046603.1\|WP_157031426.1\|4011618_4014438_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsB	gnl\|CDD\|235325	PRK04974, PRK04974, glycerol-3-phosphate 1-O-acyltransferase PlsB.	0
NZ_CP046603.1\|WP_115843272.1\|4024375_4024888_+\|protein-export-chaperone-SecB	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	1.87133e-67
NZ_CP046603.1\|WP_157031424.1\|4009713_4010253_-\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	2.08323e-13
NZ_CP046603.1\|WP_157031432.1\|4021912_4022674_-\|uroporphyrinogen-III-synthase	gnl\|CDD\|181558	PRK08811, PRK08811, uroporphyrinogen-III synthase; Validated.	7.84521e-68
NZ_CP046603.1\|WP_157031435.1\|4024900_4025929_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	5.26912e-179
NZ_CP046603.1\|WP_157031421.1\|4005080_4006172_-\|fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	1.9996e-11
NZ_CP046603.1\|WP_157031430.1\|4019546_4020797_-\|heme-biosynthesis-protein-HemY	gnl\|CDD\|225613	COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism].	1.18424e-63
NZ_CP046603.1\|WP_115843283.1\|4016339_4017617_+\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|236440	PRK09268, PRK09268, acetyl-CoA C-acetyltransferase.	0

>NZ_CP046603.1|WP_157031428.1|4018072_4018630_+|hypothetical-protein
MGTLNPYQPPVSRLSEALSAELGGDCWRDGKDLVVRPGCTLPGRCIKCNEPAELPLRHARFYWHHPALYLVVFAGLLLYLVIALFVRRRTPVTLGLCARHLRRRRANLAVASVGATLGLGVIAMGVQRDVLPVTFAGIALMLASLMFGIVGSRLLVVTRIGENYTRFRGAGADFLATLPAFYRTR
>NZ_CP046603.1|WP_115843283.1|4016339_4017617_+|acetyl-CoA-C-acetyltransferase
MRPARPVAVLGGVRIPFCRQNTAYSDVGNLGMSVRTLGALVEKFGLHGQQLGEVAMGAVIKHSSDWNLGREAALSSGLSPLTPGITLQRACGTSLDSIITIGNKIAAGQIDVGVGGGSDTTSDVPIVYGRKLRHRLLEASRAKTPRDKLAAFKGFHLRELKPEFPGVAEPRTGKSMGEHCEDMAKQWNISRDSQDEWALSSHLKLAAAYERGFFNDLVVSFRGVARDNILRADSTLEKLASLKPAFDKTSGRGTLTAGNSTPLTDGAAACLLSSDEWARSHGLEPLCYLRDAQVAAVDFVHGEGLLMAPTVAVPEMLKRNGLTLQDFDFYEIHEAFAAQVLCTLRAWESEDYCKARLGLDAPMGRIDVAKINPNGSSLAAGHPFAATGARIVATAAKELKQRGGGRCLVSICTAGGMGVVAILER
>NZ_CP046603.1|WP_157031427.1|4015286_4016183_-|hypothetical-protein
MPTPPATLHVLGALALELRGDSPVHRQALAQAEVGALAELIAADLAGFVPEAASLDLITVGAHYDPVELLRPGWPLHRELDQLAARAPRAGVAPDAGRVIAFGAHDAQLPGALTPSTDHLGGPFRLVPFVLGGSEAVAARVGEAFERELLERGMAGAATALAAQQAFGVQVEHARYLTVHDLAAMMAMQYDHAGLAELWPLLETALLQPEGEHWLDAPPEPLVHYTSGEARIAMFEPRAWKTRYATEAPCDTPECRAKLEAQHRHFQARQRQIAAVLGAHGIPVNFVHCPDEGRAALA
>NZ_CP046603.1|WP_157031426.1|4011618_4014438_+|glycerol-3-phosphate-1-O-acyltransferase-PlsB
MPAMPNQTPLPFPDADKDATTAASPAREDAATSQPAPADGAEAPREPDAAQASRRESEPETEPDPAQAELPIDAAGHVRDDDRGRRPGGPRRPSVRRPWWAKLLGRIMAPWVQVTVEPRNPAAEIPEEWSGRPVCYVLEDYGLSNALILERACREAGLPSPLQPLPGDPLKRKRAYLALSRRNVNTLTQLQQSLGTAPPSRKTHSGSLAHLLDAHRADPSMDVQLVPVSIFVGRAPDKNSGWFSVLFSENWTLVGRFRRLLAIALNGRDTLVRFAPPVSLRAIVDEGLPPERTVRKLSRVLRAHFRRIRAAVIGPDLSTRRLLVDQVLASPTVKDAIADQAARDKSSLADAWKKAHGFAYEIAADYSHPVVRSASFLLTPVWNRIYRGVLVHHLDKLKDDAPGFEVVYVPCHRSHMDYLLLSYLLYTRGIVPPHIVAGINLNLPVVGTLLRKGGAFFIRRSIRGSALYSAVLSEYVAQLVAGGYSIEYFVEGGRSRTGRLLPPKGGMVAMTVRAFVRQPTRPVLFQPIYIGYEKLMEGNSYLDELSGKPKEKESIWQLLMGIPKVLRSNYGQVVVNFGEPIRLGDVLAEHAPDWDGAPVSDEEKPAWLSDTVDALAQRIQVNVNRAADVNPINLLALALLSTPKHAMGEADLRAQIQLSKTLLAELPYSDRVTVTPHPVEEIIAHGEEINVLTRTKHPLGDVLGVSGDNAVLLSYFRNNVLHLFTAASWIACCFQNNRRMSINGVQRLGRSVYPFLQAELFLPWTEEQFAERLNRTIDVFIREGLLEKISDDEGGILARNSGQSDEVFRLRAIGHSLQQAFERYYIAISVLVKNGPGTLTAAELESLCQLAAQRLSLLYAPAAPEFFDKTLFRGFIQKLREMRLVWPDENSKLAFDSRLDTWAKDAKFILGRELRHTIEKISPESAKPAAAVEVGGGAA
>NZ_CP046603.1|WP_157031425.1|4010611_4011595_+|hypothetical-protein
MRPITRATAALTLLAALMAGGCQRAPAPVVEPTPTEPTQAVEQLIRDLRRNDLVSYSRHAVPPELHARLNTAWNEGRTRWPLTDLPLDDRLPAFIDALSAPGAEKQLLTVYRRQFSGANAELRSAAATLGLFATQYLRAEGDYSDDERAHYVQLVSAISRWAQKAPLGDVQLARQTIPSLVAGARQTGLAGGPDRFRQLGMRHSLERMGPFFERMKRVVKVYGLDVDADLATARASLIAREGERARIRLQYTLAGKAIEAELAVERRDGHWYLTDALRHAEAEAARSANGSPPKPATDENAPVAAADKVTQPAPPAATNAPPAATAP
>NZ_CP046603.1|WP_157031424.1|4009713_4010253_-|type-1-fimbrial-protein
MKKILLVAAAAAGLVSIAPAFAADGTINITGAVTSTTCRINGANSPATISVTLPSVSTAALNAAGRTAGTTPFAIVLSNCSAGINNAVTYFEAGPTIDTATGNLRNTTSGGAANVQVSLLNADATKISLQNAAGSQSSQQVAIANNGATLNYFAQYVANGAAAGAGAVTSNVTFSVVYN
>NZ_CP046603.1|WP_157031423.1|4008893_4009634_-|fimbria/pilus-periplasmic-chaperone
MNLLIRAACVALLAACTLAPVAQANVLVGGTRVVLPAKEGEVTLRLTNDNTLPALVQAWIDRGDPKATPDSVDTPFLVTPPMFRMEPQRDQSLRILYTREPLPADRESLFWLNVLEVPPKPADLEAEGKNYMQLAVRSRLKLFFRPAGLEGDPLKAPGLVTFRAVSDNGAVLVVKNPTPYYITFNEVTVDMGGKAYTAETGMVEPKGELRLRVTGLTTPPAAGAAVRFSAINDFGASSAFTGVVAP
>NZ_CP046603.1|WP_157031422.1|4006203_4008897_-|fimbria/pilus-outer-membrane-usher-protein
MTFRAGQLSPALRRVPGRAVLGTAIACALLAWSGAYAAPAAPADAQFDMTLLAGGSDQAVDLSRFERGNVIMPGVYRVDLYLDGQWSGAADVRFEAPQGEASAVPCFTAEMLDKLGLPTDKLDDAARARLAAQDGCVALSDLIPDATATYDQGELRLDVTVPQAWQGYRARGYVSPDQWDQGVTAGLLSYNANAYRTRSGGVEQTTTFVGLNAGLNLGAWRLRHDGTYIGTSSVGDVPSTHHYQSISTYVRRDITPWRAQLTLGDSYTTGELFDSVGVRGVQVATDDRMLPESQRGYAPTVRGVAETNARVSIRQNGVMLYETTVTPGPFLIDDLFATGYGGDLDVTVTEADGRVRQFSVPYAAVPQQLRPGSTRFSVVAGAVRDDASLDEPVMVQATLQRGLSNMITGYGGGVTTDGYVSALGGVALNTRAGAFAVDVTAARTKLPTEHAQTGQSVRATYSKMFPDSGTSFSLASYRYSTSGFYSLREALAARDLALGFDVDENLDDNNELPGVLTPEQRAALEGERDPRFGTGSALDRQRNRFDLNLNQRLGSAGGSVYATVSARDYWTREGTDLQFQLGYNNHYRWFNYSVSANRVRDFNGQLSNQFFLNVSVPLGGSPRAPMLTAGAMHDTDGRNQAQLSLAGTAGRDAQFTYGASVAHDDDAGTSSSVNAGYRAGFGAANASYGQGDGFSQASLGLSGTIVAHPGGVTLGQSAGDTIAIVSAPNAKGARVVNAPGVKVDRFGYALVPYLAPYAMNTVELDPKGLPLDVQLQSTSARVAPRAGGVTMLKYETQYGRALMLRVRMDDGRPVPFGAEVTDMQGQALGTVAQGGRLLLRGAAREGTVSLTWNESDKPMQCTFTYQSPQPKAGETAADLPTVEARCIPTVTFAAASL
>NZ_CP046603.1|WP_157031421.1|4005080_4006172_-|fimbrial-protein
MNSSIARFCAAILSRSPGGVIAWFLRIAVLALLAATVAMPGHAVAAVSNCSTSSAASLTMGSVTVQPNTPVGTLLGTPVSVSVQFNCSNIPSANNGGNNLFIQAGNLAPRDPMDTGANGIIFDTSIPGIGLKLTATEDQASASACLRCGPGSTAGFEMGAVPRSTGRLTQTFTAQFIKTGPVTAGVLQGVQLMQFWWYEYGYTPSSGPMSTALTLNGGATVGRVGCTVDTGSQNMTVAMPPVSTAALLPAAIGSVAGRTRFNINLTCESGTTASISFATTNAFNNSTGVIARTAATGNATNVGIQLLDATASAPVPFNTAKSMGATPDGPLSLPFHVQYYRTSTAAIAAGNVRGTLTFTMTYQ
>NZ_CP046603.1|WP_157031420.1|4004857_4004998_+|hypothetical-protein
MSVPTTYTLRLEPAASHARSQLVAYYDQYVRDAGGTAVWVATQTYD
>NZ_CP046603.1|WP_157031429.1|4018983_4019262_+|hypothetical-protein
MPLLLLLLLLLLLNSLFVASPVGRRTGCAAVSAEPWMANRERAYSLSGRGIDLGKWKALSFGYFSLGKQRKVTRAPQAIGSLDRDSSLAHKR
>NZ_CP046603.1|WP_157031430.1|4019546_4020797_-|heme-biosynthesis-protein-HemY
MNLFRNVLFWIVLALVGALVAQLLVLDPGYVLVRYGGNDYTTNVPKAIALLVVVLAVLWLLWKLATLPFVAMRRHRRKQSRARLIDGVDAVHRGEWTRAEKLLEQAAQEPDALAVGRIGAARAAMARGDETAARVHLTAIGTANPASRAIAEAEFALAQGRASEALSILDAPSATPLPPRGLVLRGEALALLGRSGEAYGTLGALRQQQALSNERLGTLEAQWAAASLREAADANVLADRWEALPKPLRNDPAAVAAYAERAAAMRWDEAASKSIEQALDAQWDESLAALYGRLPVNRFEQRRATAERWLPAHPASPALLLTLARLSRAHGQWPQAEQYLHRALAQGGNSEAWEELGDGFAASGEEKLARHCYANALRAARGEATQPLPGRDMRQTIFDQAVVEERDAHGVPRLRE
>NZ_CP046603.1|WP_157031431.1|4020876_4021851_-|hypothetical-protein
MSPPAPTPPPARRSRGWIAWLIVVVLAVIAGAWGWTQWQARNERDREQQLDAGQRLDAVEGRIDSIRRDQRSQLQRLQQADATNRVLRDEVLGIGQRSSLIEDTVSKLADPNRHGEQALRLDEAELLLNMAQQRLLIAGDLEGARRAYVLAGNVLDGIDDPAYLSLRQTLQQERAGVDALGVEPRVRAMAELDAFAQTISTAPVEAQSTLPSDAPWWRRAFATLIDVQPSDRTVAVQPADRIAAASGLQLEISLARAAAERRDEAGFRKALQRAEGWMTRLWPPSPMLDQQRAKLREIAGRELSLTLPTLGSTLQQLRQLRAAG
>NZ_CP046603.1|WP_157031432.1|4021912_4022674_-|uroporphyrinogen-III-synthase
MPAPATPGWYVISLRARGEHAPMRAAAASAGAGLIAISPWRLHLRDDETTRERLHEALAAPRVVVTSPVAVRAARRLQPLRALPAQRWFAVGEGTAIALRRAGVADVEAPRRMDSEGLLSLPGLAELTGQTVGFITAPGGRGVLVPALEARGARVIRADVYERIAVAPSPRSLARLAELDAPAKLALSSAEALQLVVDALPEPLLDRLRRAQVIAASERLADIARTHGFTDVVIAHSARPADLVAAAAGTPAE
>NZ_CP046603.1|WP_157031433.1|4022719_4023226_+|thioesterase
MTSDPRALHPYADALARLHHHYQSMPPVAAMDVSVADYDGYRLRLHAPLSTHVNDKGCAFGGSLASMMTLASWGLVSLHVEEAGLEAEVFVADSQIRYLAPLFADLDVEAELAPEAAWPGFIATLRERGRARIGLVARAKLPDGGIATEFTARYVAIAKPRATGAISG
>NZ_CP046603.1|WP_115843277.1|4023254_4023680_+|hypothetical-protein
MRLTKTLLLAVLALLLVATAPAFARGKMDQLQANQYAWSGAIRWGDFEGALSLIEPGYREAHPVSDLELKRYEQVQITAYRERNSSADKKGGIALRDIEIGVVNRHTQAERTVRYREEWRWDEASKNWWLVSGMPDLWDGE
>NZ_CP046603.1|WP_115843274.1|4023752_4024190_+|rhodanese-like-domain-containing-protein
MTFQDLLAFAERHLYLSLGLVGLTVAILYTEVARLFRGYKALRPAELTGLMNRENALVVDLSASADFEKGHIAGSKSVQPSQFDPESKLLAGAKELPVVVVCRNGQGSADAAKRLKKAGFKHVYWLDGGIGAWQAADLPLVKGRA
>NZ_CP046603.1|WP_115843272.1|4024375_4024888_+|protein-export-chaperone-SecB
MSEENVNGNAASAETNGPAFTVEKIYVKDVSFEVPGGPAIFNEQAQPQLQMNLNQSVQRLNDNAFEVVLGITLTCSANEKTLYVAEVKQAGVFGLAGFDAQTLDAMLGTHCPNVLYPYTRQLISDLIQAGGFPPFYLQPINFDALYAEGLRQRAAQQQSGLADAETAGNA
>NZ_CP046603.1|WP_157031435.1|4024900_4025929_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MEANALPNVAVLGAGSWGTALAALIARHGHPTVLWGRDADGIEAIETRHENPRYLPGIPLPASLRATTDLEHSLKGADFVLVVVPSHAFAETLRKLAPHRPAHAGVAWATKGFEPGSGRFLHEVAEEVLGPDVPLAVVTGPSFAKEVAQGLPTALTVHGNDAPFAQAVADALHGPAFRAYTGNDMLGAELGGAMKNVLAVATGVADGMQLGLNARAGLITRGLNEMLRLNHAIGGKAETLMGLAGLGDLVLTCTGDLSRNRRLGLALGRGQSIEDAVREIGQVVESVQTADEVMRQAERHGIELPISSAVQCVLHGDLTPAEGLKLLLSREQKPEYPRNLFG
>NZ_CP046603.1|WP_157031437.1|4025998_4026637_-|hypothetical-protein
MKKQLALATALAAAPFAALAGGHSYTYLEAGYAQLNQELPAPAGFEIDDIEAGGFYVAGSAEIAPSIHLFGAYRKGDDDVSVSLPMGGGEIGSAGIDMSQGVLGAGWHHDLRDRTDLVAELSWLRTKIDVKDDEEGADEGDDVRIAVGVRHLIADNVELWVKGNYTDGDLYDGAFSASAGVQYKLTQTWGLVAEAEGGGDTSMFGVGVRASF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP046603_12	12.1\|4018797\|52\|NZ_CP046603\|CRISPRCasFinder	4018797-4018848	52	NZ_CP046603.1	2943600-2943651	2	0.962

1. spacer 12.1|4018797|52|NZ_CP046603|CRISPRCasFinder matches to position: 2943600-2943651, mismatch: 2, identity: 0.962

cttcgttgcccctcaccccaacccctctcccgatgggagaggggttaaaacg	CRISPR spacer
cttcgttgcccctcaccccaacccctctcccgatgggagaggggctaaagcg	Protospacer
********************************************.****.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP046603_6	6.1\|2955880\|28\|NZ_CP046603\|CRISPRCasFinder	2955880-2955907	28	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	357978-358005	3	0.893
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	NZ_CP017021	Xanthomonas citri pv. malvacearum strain MSCT plasmid pMSCT15kb, complete sequence	13933-13957	3	0.88
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	NZ_CP023162	Xanthomonas citri pv. malvacearum strain MS14003 plasmid unnamed3, complete sequence	9626-9650	3	0.88
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	MN850572	Escherichia phage aaroes, complete genome	2078-2102	3	0.88
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	MG065675	UNVERIFIED: Campylobacter phage A118, complete genome	8993-9017	3	0.88
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	MG065671	UNVERIFIED: Campylobacter phage A120, complete genome	41096-41120	3	0.88
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	MG065670	UNVERIFIED: Campylobacter phage A121, complete genome	25344-25368	3	0.88
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	MN850600	Escherichia phage haarsle, complete genome	41175-41199	3	0.88
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	MG065669	UNVERIFIED: Campylobacter phage A123, complete genome	8977-9001	3	0.88
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	NC_049825	Escherichia phage grams, complete genome	45931-45955	3	0.88
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	NC_049827	Escherichia phage damhaus, complete genome	27646-27670	3	0.88
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	MT360681	Shigella virus 2019SD1, complete genome	35459-35483	3	0.88
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	MT360681	Shigella virus 2019SD1, complete genome	35600-35624	3	0.88
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	MN850591	Escherichia phage aalborv, complete genome	44775-44799	3	0.88
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	NZ_CP017021	Xanthomonas citri pv. malvacearum strain MSCT plasmid pMSCT15kb, complete sequence	13939-13963	4	0.84
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	NZ_CP023162	Xanthomonas citri pv. malvacearum strain MS14003 plasmid unnamed3, complete sequence	9620-9644	4	0.84
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	NZ_CP021355	Rhodococcus sp. S2-17 plasmid pRB98, complete sequence	10661-10685	4	0.84
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	MT939492	Xanthomonas phage Xoo-sp14, complete genome	59582-59606	4	0.84
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	MG198570	Lake Baikal phage Baikal-20-5m-C28, complete genome	60843-60867	4	0.84
NZ_CP046603_7	7.1\|2989137\|25\|NZ_CP046603\|CRISPRCasFinder	2989137-2989161	25	MH248138	Erwinia phage vB_EamM_Alexandra, complete genome	222048-222072	5	0.8
NZ_CP046603_6	6.1\|2955880\|28\|NZ_CP046603\|CRISPRCasFinder	2955880-2955907	28	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5661553-5661580	6	0.786
NZ_CP046603_6	6.1\|2955880\|28\|NZ_CP046603\|CRISPRCasFinder	2955880-2955907	28	MN855691	Bacteriophage sp. isolate 397, complete genome	2429-2456	6	0.786
NZ_CP046603_6	6.1\|2955880\|28\|NZ_CP046603\|CRISPRCasFinder	2955880-2955907	28	MN693257	Marine virus AFVG_25M21, complete genome	3275-3302	7	0.75
NZ_CP046603_6	6.1\|2955880\|28\|NZ_CP046603\|CRISPRCasFinder	2955880-2955907	28	NZ_CP029828	Burkholderia sp. JP2-270 plasmid p2, complete sequence	186552-186579	8	0.714
NZ_CP046603_12	12.1\|4018797\|52\|NZ_CP046603\|CRISPRCasFinder	4018797-4018848	52	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	209573-209624	10	0.808
NZ_CP046603_12	12.1\|4018797\|52\|NZ_CP046603\|CRISPRCasFinder	4018797-4018848	52	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	246002-246053	11	0.788

1. spacer 6.1|2955880|28|NZ_CP046603|CRISPRCasFinder matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 3, identity: 0.893

aacggcgaagaaagcgaccaagaaggcc	CRISPR spacer
aacggcgaagaaggcgacgaagaaggcg	Protospacer
************.***** ********

2. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to NZ_CP017021 (Xanthomonas citri pv. malvacearum strain MSCT plasmid pMSCT15kb, complete sequence) position: , mismatch: 3, identity: 0.88

agcaagagcaagagcaacggcaaga	CRISPR spacer
agcaagagcaacagcaagggcaaca	Protospacer
*********** ***** ***** *

3. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to NZ_CP023162 (Xanthomonas citri pv. malvacearum strain MS14003 plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.88

agcaagagcaagagcaacggcaaga	CRISPR spacer
agcaagagcaacagcaagggcaaca	Protospacer
*********** ***** ***** *

4. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to MN850572 (Escherichia phage aaroes, complete genome) position: , mismatch: 3, identity: 0.88

agcaagagcaagagcaacggcaaga	CRISPR spacer
agtaagagcaagagcaacgccaaaa	Protospacer
**.**************** ***.*

5. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to MG065675 (UNVERIFIED: Campylobacter phage A118, complete genome) position: , mismatch: 3, identity: 0.88

agcaagagcaagagcaacggcaaga	CRISPR spacer
agtaagagcaagagcaacgccaaaa	Protospacer
**.**************** ***.*

6. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to MG065671 (UNVERIFIED: Campylobacter phage A120, complete genome) position: , mismatch: 3, identity: 0.88

agcaagagcaagagcaacggcaaga	CRISPR spacer
agtaagagcaagagcaacgccaaaa	Protospacer
**.**************** ***.*

7. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to MG065670 (UNVERIFIED: Campylobacter phage A121, complete genome) position: , mismatch: 3, identity: 0.88

agcaagagcaagagcaacggcaaga	CRISPR spacer
agtaagagcaagagcaacgccaaaa	Protospacer
**.**************** ***.*

8. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to MN850600 (Escherichia phage haarsle, complete genome) position: , mismatch: 3, identity: 0.88

agcaagagcaagagcaacggcaaga	CRISPR spacer
agtaagagcaagagcaacgccaaaa	Protospacer
**.**************** ***.*

9. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to MG065669 (UNVERIFIED: Campylobacter phage A123, complete genome) position: , mismatch: 3, identity: 0.88

agcaagagcaagagcaacggcaaga	CRISPR spacer
agtaagagcaagagcaacgccaaaa	Protospacer
**.**************** ***.*

10. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to NC_049825 (Escherichia phage grams, complete genome) position: , mismatch: 3, identity: 0.88

agcaagagcaagagcaacggcaaga	CRISPR spacer
agtaagagcaagagcaacgccaaaa	Protospacer
**.**************** ***.*

11. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to NC_049827 (Escherichia phage damhaus, complete genome) position: , mismatch: 3, identity: 0.88

agcaagagcaagagcaacggcaaga	CRISPR spacer
agtaagagcaagagcaacgccaaaa	Protospacer
**.**************** ***.*

12. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to MT360681 (Shigella virus 2019SD1, complete genome) position: , mismatch: 3, identity: 0.88

agcaagagcaagagcaacggcaaga	CRISPR spacer
agtaagagcaagagcaacgccaaaa	Protospacer
**.**************** ***.*

13. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to MT360681 (Shigella virus 2019SD1, complete genome) position: , mismatch: 3, identity: 0.88

agcaagagcaagagcaacggcaaga	CRISPR spacer
agtaagagcaagagcaacgccaaaa	Protospacer
**.**************** ***.*

14. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to MN850591 (Escherichia phage aalborv, complete genome) position: , mismatch: 3, identity: 0.88

agcaagagcaagagcaacggcaaga	CRISPR spacer
agtaagagcaagagcaacgccaaaa	Protospacer
**.**************** ***.*

15. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to NZ_CP017021 (Xanthomonas citri pv. malvacearum strain MSCT plasmid pMSCT15kb, complete sequence) position: , mismatch: 4, identity: 0.84

agcaagagcaagagcaacggcaaga	CRISPR spacer
cccaagagcaagagcaacagcaagg	Protospacer
  ****************.*****.

16. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to NZ_CP023162 (Xanthomonas citri pv. malvacearum strain MS14003 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

agcaagagcaagagcaacggcaaga	CRISPR spacer
cccaagagcaagagcaacagcaagg	Protospacer
  ****************.*****.

17. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 4, identity: 0.84

agcaagagcaagagcaacggcaaga	CRISPR spacer
ggcaacagcaacagcaacggcaagg	Protospacer
.**** ***** ************.

18. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to MT939492 (Xanthomonas phage Xoo-sp14, complete genome) position: , mismatch: 4, identity: 0.84

agcaagagcaagagcaacggcaaga	CRISPR spacer
agcaagagcaagatcatcggcaaag	Protospacer
************* ** ******..

19. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to MG198570 (Lake Baikal phage Baikal-20-5m-C28, complete genome) position: , mismatch: 4, identity: 0.84

agcaagagcaagagcaacggcaaga	CRISPR spacer
tgcaacagcaagagcaacagcaagc	Protospacer
 **** ************.*****

20. spacer 7.1|2989137|25|NZ_CP046603|CRISPRCasFinder matches to MH248138 (Erwinia phage vB_EamM_Alexandra, complete genome) position: , mismatch: 5, identity: 0.8

agcaagagcaagagcaacggcaaga	CRISPR spacer
cctgagagcaagagcaaaggcaaga	Protospacer
  ..************* *******

21. spacer 6.1|2955880|28|NZ_CP046603|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.786

aacggcgaagaaagcgaccaagaaggcc	CRISPR spacer
gcaggcgaagaaggcgaccaagaagcca	Protospacer
.  *********.************ *

22. spacer 6.1|2955880|28|NZ_CP046603|CRISPRCasFinder matches to MN855691 (Bacteriophage sp. isolate 397, complete genome) position: , mismatch: 6, identity: 0.786

aacggcgaagaaagcgaccaagaaggcc	CRISPR spacer
cgctgcgaagaaagcgaccgtgaaggca	Protospacer
 .* ***************. ******

23. spacer 6.1|2955880|28|NZ_CP046603|CRISPRCasFinder matches to MN693257 (Marine virus AFVG_25M21, complete genome) position: , mismatch: 7, identity: 0.75

aacggcgaagaaagcgaccaagaaggcc	CRISPR spacer
gtcggcacagaaagcgaccaagaagaaa	Protospacer
. ****. *****************.

24. spacer 6.1|2955880|28|NZ_CP046603|CRISPRCasFinder matches to NZ_CP029828 (Burkholderia sp. JP2-270 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.714

aacggcgaagaaagcgaccaagaaggcc	CRISPR spacer
tcgcgcgaagaaagcgtccaagaagtgg	Protospacer
    ************ ********

25. spacer 12.1|4018797|52|NZ_CP046603|CRISPRCasFinder matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.808

cttcgttgc-ccctcaccccaacccctctcccgatgggagaggggttaaaacg	CRISPR spacer
-gtcgccgcaccctcaccccaacccctctcccggtgggagaggggctaccagc	Protospacer
  ***..** ***********************.***********.**  *

26. spacer 12.1|4018797|52|NZ_CP046603|CRISPRCasFinder matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.788

cttcgttgc-ccctcaccccaacccctctcccgatgggagaggggttaaaacg	CRISPR spacer
-cgcaccgcaccctcaccccaacccctctcccggtgggagaggggctacatca	Protospacer
 . *...** ***********************.***********.** * *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1214516 : 1288752

Klosneuvirus(16.67%)

protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115840903.1\|1214516_1216418_+\|protease	ATP-dependent zinc metalloprotease FtsH	H8ZJI5	Ostreococcus_tauri_virus	2.1e-113	40.4
WP_157031612.1\|1216566_1217466_+	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	1.7e-28	35.6
WP_157029643.1\|1218264_1219239_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_157029644.1\|1219376_1219652_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_157029645.1\|1219791_1221108_+	GTPase HflX	NA	NA	NA	NA
WP_157029646.1\|1221221_1222337_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_115840898.1\|1222333_1223197_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_157029647.1\|1223207_1223399_+	DUF2065 family protein	NA	NA	NA	NA
WP_157029648.1\|1223661_1224954_+	adenylosuccinate synthase	A0A2R8FF47	Brazilian_cedratvirus	8.4e-74	37.7
WP_157029649.1\|1225043_1225442_-	hypothetical protein	NA	NA	NA	NA
WP_157029650.1\|1225526_1227635_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.5e-11	45.7
WP_157029651.1\|1227760_1228402_-	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_157029652.1\|1228385_1229723_-	DUF21 domain-containing protein	NA	NA	NA	NA
WP_115840891.1\|1229996_1230623_+	DUF47 family protein	NA	NA	NA	NA
WP_115840890.1\|1230635_1231763_+	inorganic phosphate transporter	NA	NA	NA	NA
WP_115840889.1\|1231827_1232238_-	hypothetical protein	NA	NA	NA	NA
WP_157029653.1\|1232279_1232726_+	cysteine methyltransferase	NA	NA	NA	NA
WP_115840887.1\|1232810_1233464_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_157029654.1\|1233546_1235550_-	M13 family peptidase	A0A1V0SHG2	Klosneuvirus	4.7e-31	23.4
WP_157029655.1\|1235722_1237897_-	peptidase	A0A1V0SHG2	Klosneuvirus	1.7e-82	29.4
WP_157029656.1\|1238129_1239257_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_157029657.1\|1239283_1239607_+	thioredoxin	NA	NA	NA	NA
WP_157029658.1\|1239662_1240739_+	ROK family protein	NA	NA	NA	NA
WP_147298543.1\|1240831_1241140_+	hypothetical protein	NA	NA	NA	NA
WP_157029659.1\|1241191_1242580_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_157029660.1\|1242613_1244440_-	potassium transporter	NA	NA	NA	NA
WP_157029661.1\|1244787_1246098_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.8e-45	31.0
WP_157029662.1\|1246189_1246624_-	DUF4440 domain-containing protein	NA	NA	NA	NA
WP_157029663.1\|1246640_1247678_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_157029664.1\|1247805_1248621_+	FkbM family methyltransferase	NA	NA	NA	NA
WP_157029665.1\|1248648_1251639_+	hypothetical protein	NA	NA	NA	NA
WP_157029666.1\|1251778_1252549_-	hypothetical protein	NA	NA	NA	NA
WP_157029667.1\|1253141_1254968_-	DUF885 family protein	NA	NA	NA	NA
WP_157029668.1\|1255128_1256955_-	DUF885 family protein	NA	NA	NA	NA
WP_157031613.1\|1257222_1257996_-	queuosine precursor transporter	NA	NA	NA	NA
WP_115840870.1\|1258068_1258779_-	DUF502 domain-containing protein	A0A2I7S9X1	Vibrio_phage	8.8e-09	25.8
WP_115840869.1\|1258859_1260866_-	protein kinase	V5L5T2	Insectomime_virus	6.5e-17	33.7
WP_157029669.1\|1261039_1261510_-	DUF4442 domain-containing protein	NA	NA	NA	NA
WP_157029670.1\|1261586_1262471_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	1.2e-10	36.3
WP_157029671.1\|1262572_1263193_+	DUF998 domain-containing protein	NA	NA	NA	NA
WP_115841044.1\|1263235_1264303_-	amidohydrolase family protein	NA	NA	NA	NA
WP_157029672.1\|1264738_1267504_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	6.0e-170	38.8
WP_157029673.1\|1267766_1268342_+	hypothetical protein	NA	NA	NA	NA
WP_157029674.1\|1268341_1269409_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_157029675.1\|1269420_1270098_+	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA
WP_157029676.1\|1270137_1270566_+	ribosome silencing factor	NA	NA	NA	NA
WP_157029677.1\|1270668_1272219_-	DUF839 domain-containing protein	NA	NA	NA	NA
WP_115841042.1\|1272349_1272820_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_157029678.1\|1272906_1276419_-	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV18	Escherichia_phage	1.4e-51	34.6
WP_157029679.1\|1276589_1277321_-	TonB family protein	NA	NA	NA	NA
WP_157029680.1\|1277428_1277623_-	hypothetical protein	NA	NA	NA	NA
WP_115840857.1\|1277624_1278374_-	DUF541 domain-containing protein	NA	NA	NA	NA
WP_157029681.1\|1278514_1279138_+	septum formation inhibitor Maf	NA	NA	NA	NA
WP_115840855.1\|1279274_1280768_+	ribonuclease G	NA	NA	NA	NA
WP_157029682.1\|1280942_1284803_+	TIGR02099 family protein	NA	NA	NA	NA
WP_115840853.1\|1285139_1286582_+\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_157029683.1\|1286647_1287226_-	ribosome-associated protein	NA	NA	NA	NA
WP_157031614.1\|1287381_1288752_+\|protease	metalloprotease PmbA	NA	NA	NA	NA

DBSCAN-SWA_2

1436115 : 1445438

Pseudomonas_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157029775.1\|1436115_1436616_+	nicotinamide-nucleotide amidohydrolase family protein	B5TK85	Pseudomonas_phage	1.1e-26	48.7
WP_115840757.1\|1436684_1437341_+	transcriptional repressor LexA	A0A218MND2	uncultured_virus	4.5e-07	32.5
WP_157029776.1\|1437583_1438618_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	6.2e-112	61.4
WP_157029777.1\|1438656_1439163_+	recombination regulator RecX	NA	NA	NA	NA
WP_157029778.1\|1439489_1442123_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	6.2e-84	39.5
WP_115840753.1\|1442259_1442466_+	carbon storage regulator CsrA	J7I430	Pseudomonas_phage	1.3e-13	76.5
WP_157029779.1\|1442994_1444041_-	NAD-dependent epimerase/dehydratase family protein	A0A2K9L0I7	Tupanvirus	3.8e-32	29.5
WP_157029780.1\|1444043_1445438_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	M1I6A7	Acanthocystis_turfacea_Chlorella_virus	4.1e-26	30.0

DBSCAN-SWA_3

3129175 : 3136939

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157031745.1\|3129175_3130855_+	MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.3e-31	42.8
WP_157030897.1\|3130906_3132889_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_157030898.1\|3132990_3133875_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.6e-31	37.6
WP_157030899.1\|3133885_3134443_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	7.8e-45	52.2
WP_157030900.1\|3134439_3135324_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.3e-97	57.8
WP_115842490.1\|3135333_3136386_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	8.0e-83	48.0
WP_157030901.1\|3136429_3136939_-	single-stranded DNA-binding protein	K7ZMK1	Xanthomonas_citri_phage	2.6e-31	64.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046603

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection