CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046621	Pseudomonas alkylphenolica strain Neo chromosome, complete genome	0 crisprs	WYL,DEDDh,cas3,csa3,DinG,RT	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3115005 : 3201261

uncultured_Caudovirales_phage(48.84%)

integrase,plate,protease,terminase,lysis,transposase,portal,holin,tail

attL 3132416:3132441|attR 3202916:3202941

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157192682.1\|3115005_3115851_-\|integrase	integrase	NA	NA	NA	NA
WP_157192683.1\|3116014_3116866_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_038611136.1\|3116968_3118009_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_157192684.1\|3118074_3119565_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_157192685.1\|3119867_3121250_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_157192686.1\|3121413_3122793_+	amino acid permease	NA	NA	NA	NA
WP_157194737.1\|3123019_3124480_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_157192687.1\|3124499_3125624_+	zinc-binding dehydrogenase	E3SJ82	Synechococcus_phage	2.1e-17	25.1
WP_157194738.1\|3125716_3126571_+	transporter	NA	NA	NA	NA
WP_157194739.1\|3126677_3128480_+	AAA domain-containing protein	NA	NA	NA	NA
WP_157192688.1\|3128532_3129678_-	glycerate kinase	W6LM47	Streptococcus_phage	3.2e-37	37.6
WP_157192689.1\|3129782_3130883_-	CdaR family transcriptional regulator	NA	NA	NA	NA
WP_157192690.1\|3131044_3132379_+	MFS transporter	NA	NA	NA	NA
3132416:3132441	attL	NA	NA	NA	NA
WP_157192691.1\|3132503_3133511_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.6e-08	28.3
WP_157192692.1\|3133653_3134724_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_157192693.1\|3134740_3135892_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_157192694.1\|3136570_3137668_+	3-deoxy-7-phosphoheptulonate synthase	A0A1Z1LZD8	Serratia_phage	1.8e-85	49.2
WP_157192695.1\|3137700_3137982_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_157194740.1\|3137990_3139916_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_157192696.1\|3139912_3140971_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_157192697.1\|3140970_3141993_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_157192698.1\|3143644_3145036_+	GntP family permease	NA	NA	NA	NA
WP_157192699.1\|3145046_3145817_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA
WP_157192700.1\|3145872_3146352_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_157192701.1\|3146378_3148340_+	acetoacetate--CoA ligase	NA	NA	NA	NA
WP_038611202.1\|3148375_3148651_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_157192702.1\|3148647_3148908_-	DUF1652 domain-containing protein	NA	NA	NA	NA
WP_157192703.1\|3149024_3149651_-	LysE family transporter	NA	NA	NA	NA
WP_038608001.1\|3150215_3150509_+\|transposase	transposase	NA	NA	NA	NA
WP_157192012.1\|3150505_3151366_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-43	39.1
WP_157192704.1\|3151603_3152299_-	serine/threonine protein phosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.9e-64	54.5
WP_157192705.1\|3152376_3152895_+	DUF3016 domain-containing protein	NA	NA	NA	NA
WP_157192706.1\|3152952_3153237_+	hypothetical protein	NA	NA	NA	NA
WP_157192707.1\|3153447_3155073_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.9e-44	35.3
WP_157192708.1\|3155197_3158029_-	amino acid adenylation domain-containing protein	A0A2K9L3I8	Tupanvirus	3.9e-39	25.3
WP_157192709.1\|3158197_3158497_-	hypothetical protein	NA	NA	NA	NA
WP_157192710.1\|3158480_3158714_-	hypothetical protein	NA	NA	NA	NA
WP_157192711.1\|3158760_3158910_-	hypothetical protein	NA	NA	NA	NA
WP_157192712.1\|3159918_3160218_+	hypothetical protein	NA	NA	NA	NA
WP_157192713.1\|3160214_3160418_-	hypothetical protein	NA	NA	NA	NA
WP_157192714.1\|3160439_3160646_-	hypothetical protein	A0A2H4JG60	uncultured_Caudovirales_phage	1.6e-08	56.9
WP_157192715.1\|3160775_3162182_-	DUF1254 domain-containing protein	M1IA53	Paramecium_bursaria_Chlorella_virus	1.4e-79	39.3
WP_157194741.1\|3162540_3163020_-\|lysis	lysis protein	A0A2H4JBH9	uncultured_Caudovirales_phage	1.5e-20	49.0
WP_157192716.1\|3163064_3163721_-	glycoside hydrolase family 19 protein	A0A2H4J3Y3	uncultured_Caudovirales_phage	2.9e-67	63.3
WP_157192717.1\|3163750_3164800_-	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	5.1e-154	78.1
WP_157192718.1\|3164921_3165248_-	hypothetical protein	NA	NA	NA	NA
WP_157192719.1\|3165317_3165524_-\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	6.4e-21	68.7
WP_157194742.1\|3165498_3166263_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	1.3e-85	62.1
WP_157192720.1\|3166353_3169314_-\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	4.0e-63	35.7
WP_157192721.1\|3169446_3169749_-\|tail	phage tail assembly protein	A0A2H4J873	uncultured_Caudovirales_phage	4.3e-21	55.9
WP_157192722.1\|3169760_3170270_-\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	1.3e-65	71.9
WP_157192723.1\|3170282_3171449_-\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	2.6e-183	83.1
WP_157192724.1\|3171545_3172007_-\|tail	phage tail protein	B5TK82	Pseudomonas_phage	2.6e-22	40.8
WP_157192725.1\|3174316_3174928_-\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	3.3e-65	66.7
WP_157192726.1\|3174929_3175811_-\|plate	baseplate assembly protein	A0A2H4JFK9	uncultured_Caudovirales_phage	3.3e-114	73.3
WP_157192727.1\|3175807_3176134_-\|plate	phage baseplate protein	A0A2H4JA09	uncultured_Caudovirales_phage	5.6e-35	64.8
WP_157192728.1\|3176138_3176342_-	hypothetical protein	NA	NA	NA	NA
WP_157192729.1\|3176398_3176719_-	hypothetical protein	NA	NA	NA	NA
WP_157192730.1\|3176727_3177288_-\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	2.2e-55	59.6
WP_157192731.1\|3177284_3177827_-	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	9.4e-19	36.1
WP_157192732.1\|3177801_3178179_-	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	8.0e-09	33.7
WP_157192733.1\|3178178_3178493_-	DUF2190 family protein	NA	NA	NA	NA
WP_157194743.1\|3178559_3180581_-\|protease	Clp protease ClpP	A0A1W6JT88	Pseudomonas_phage	1.8e-232	63.7
WP_157192734.1\|3180564_3182109_-\|portal	phage portal protein	A0A1B0YZU4	Pseudomonas_phage	2.2e-198	70.5
WP_157192735.1\|3182117_3182339_-	primosomal replication protein PriB/PriC domain protein	NA	NA	NA	NA
WP_157192736.1\|3182329_3184372_-\|terminase	phage terminase large subunit family protein	A0A1B0Z2K0	Pseudomonas_phage	9.0e-248	59.7
WP_157192737.1\|3184334_3184880_-	DNA-packaging protein	A0A1W6JT69	Pseudomonas_phage	3.7e-47	53.0
WP_157192738.1\|3185028_3185769_-	hypothetical protein	A0A1W6JTE1	Pseudomonas_phage	2.7e-24	35.6
WP_157192739.1\|3185784_3186105_-\|holin	holin	A0A2H4J893	uncultured_Caudovirales_phage	2.1e-10	39.8
WP_157192740.1\|3186330_3187311_-	DUF4238 domain-containing protein	NA	NA	NA	NA
WP_157194744.1\|3187354_3187741_-	antitermination protein Q	A0A1W6JTD2	Pseudomonas_phage	3.0e-35	55.5
WP_157192741.1\|3187748_3188078_-	hypothetical protein	A0A2D1GNG3	Pseudomonas_phage	8.4e-23	56.4
WP_157194745.1\|3188040_3189348_-\|integrase	tyrosine-type recombinase/integrase	A0A2D1GND4	Pseudomonas_phage	1.4e-113	51.0
WP_157192742.1\|3189362_3189599_-	hypothetical protein	NA	NA	NA	NA
WP_157192743.1\|3189598_3190978_-	replicative DNA helicase	A0A127KNK8	Pseudomonas_phage	1.0e-122	52.8
WP_157194746.1\|3190970_3191675_-	helix-turn-helix domain-containing protein	A0A1B0YZZ0	Pseudomonas_phage	6.0e-26	56.9
WP_157192744.1\|3191934_3192108_-	Cro/Cl family transcriptional regulator	R9TPV3	Vibrio_phage	4.9e-06	51.1
WP_157192745.1\|3192217_3192874_+	helix-turn-helix domain-containing protein	K7PM82	Enterobacteria_phage	4.7e-41	50.8
WP_157192746.1\|3193042_3193294_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_157192747.1\|3193619_3193805_+	carbon storage regulator CsrA	H2BD56	Pseudomonas_phage	3.2e-11	59.0
WP_157192748.1\|3193965_3194349_+	helix-turn-helix transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	1.6e-25	62.0
WP_157192749.1\|3194371_3194641_+	hypothetical protein	NA	NA	NA	NA
WP_157192750.1\|3194637_3195099_+	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	6.9e-47	61.4
WP_157192751.1\|3195242_3195875_-	hypothetical protein	NA	NA	NA	NA
WP_157192752.1\|3196587_3197523_-	hypothetical protein	NA	NA	NA	NA
WP_157192753.1\|3197595_3198006_+	hypothetical protein	NA	NA	NA	NA
WP_157192754.1\|3198220_3198511_-	hypothetical protein	NA	NA	NA	NA
WP_157192755.1\|3198640_3198940_-	hypothetical protein	NA	NA	NA	NA
WP_157192756.1\|3199080_3199668_+	hypothetical protein	NA	NA	NA	NA
WP_157192757.1\|3200067_3201261_+\|integrase	tyrosine-type recombinase/integrase	J7HXC4	Pseudomonas_phage	2.6e-122	57.8
3202916:3202941	attR	NA	NA	NA	NA

DBSCAN-SWA_2

3734341 : 3784892

uncultured_Caudovirales_phage(38.89%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157192276.1\|3734341_3735202_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.3e-43	39.1
WP_038608001.1\|3735198_3735492_-\|transposase	transposase	NA	NA	NA	NA
WP_157192012.1\|3736220_3737081_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-43	39.1
WP_157192900.1\|3737058_3737370_-\|transposase	transposase	NA	NA	NA	NA
WP_157193175.1\|3737602_3738331_-	Asp/Glu/hydantoin racemase	NA	NA	NA	NA
WP_157193176.1\|3738355_3739885_-	NCS1 family nucleobase:cation symporter-1	NA	NA	NA	NA
WP_157193177.1\|3740389_3741079_+	FCD domain-containing protein	NA	NA	NA	NA
WP_157193178.1\|3741181_3742381_+	amidohydrolase family protein	NA	NA	NA	NA
WP_157193179.1\|3742446_3743283_-	5'-nucleotidase, lipoprotein e(P4) family	NA	NA	NA	NA
WP_157193180.1\|3743509_3744721_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	3.5e-13	30.4
WP_157193181.1\|3744662_3745523_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_157193182.1\|3745617_3746067_+	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA
WP_157193183.1\|3746172_3747462_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_038612709.1\|3747474_3748032_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_157193184.1\|3748055_3749408_+	glutamine synthetase	NA	NA	NA	NA
WP_157193185.1\|3749468_3749885_-	VOC family protein	NA	NA	NA	NA
WP_157193186.1\|3749957_3750797_+	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA
WP_157194769.1\|3751063_3754465_+	multicopper oxidase domain-containing protein	R9ZZU2	Cellulophaga_phage	9.8e-05	35.9
WP_157193187.1\|3754506_3755499_+	c-type cytochrome	NA	NA	NA	NA
WP_157193188.1\|3755514_3755988_+	copper chaperone PCu(A)C	NA	NA	NA	NA
WP_157193189.1\|3755996_3756416_-	MAPEG family protein	NA	NA	NA	NA
WP_157193190.1\|3756433_3757009_-	hypothetical protein	NA	NA	NA	NA
WP_157193191.1\|3757114_3757396_-	hypothetical protein	NA	NA	NA	NA
WP_157193192.1\|3757516_3757879_+	osmotically-inducible lipoprotein OsmE	NA	NA	NA	NA
WP_157193193.1\|3757973_3759422_-	GHKL domain-containing protein	W8CYF6	Bacillus_phage	5.4e-05	31.8
WP_157193194.1\|3759590_3760040_-	hypothetical protein	NA	NA	NA	NA
WP_157193195.1\|3760181_3760373_-	hypothetical protein	NA	NA	NA	NA
WP_157193196.1\|3760679_3760916_+	hypothetical protein	NA	NA	NA	NA
WP_157193197.1\|3761520_3762462_+	universal stress protein UspA	NA	NA	NA	NA
WP_157193198.1\|3762486_3762885_-	hypothetical protein	NA	NA	NA	NA
WP_157193199.1\|3763096_3763465_-	hypothetical protein	NA	NA	NA	NA
WP_157193200.1\|3763867_3764101_-	hypothetical protein	NA	NA	NA	NA
WP_157193201.1\|3764169_3764541_-	hypothetical protein	A0A1W6JTC7	Pseudomonas_phage	3.2e-10	61.1
WP_157193202.1\|3764723_3765137_+	hypothetical protein	NA	NA	NA	NA
WP_157193203.1\|3767033_3767705_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-106	91.0
WP_038612765.1\|3767850_3769230_+	uracil-xanthine permease	H9YQ34	environmental_Halophage	8.2e-27	51.5
WP_157194770.1\|3769371_3769764_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	3.8e-54	79.1
WP_157193204.1\|3769765_3770125_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.8e-34	64.2
WP_157193205.1\|3770124_3770424_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	4.2e-29	64.6
WP_157193206.1\|3770420_3770756_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.2e-46	80.2
WP_157193207.1\|3770752_3771748_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.1e-155	80.5
WP_157193208.1\|3771858_3772827_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_157193209.1\|3772926_3774315_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_157193210.1\|3774315_3775596_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.2e-96	46.6
WP_038612780.1\|3775613_3775988_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	2.3e-08	42.2
WP_157193211.1\|3775984_3777310_-	AAA family ATPase	G3MBE0	Bacillus_virus	2.8e-80	40.1
WP_157193212.1\|3777328_3777952_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_157193213.1\|3778016_3780425_-	cell division protein FtsK	A0A218M9A2	Mycobacterium_phage	1.9e-87	51.4
WP_157193214.1\|3780717_3781398_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_157193215.1\|3781455_3782163_+	arginyltransferase	NA	NA	NA	NA
WP_002553999.1\|3782267_3782486_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_038612792.1\|3782621_3784892_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.9e-164	42.8

DBSCAN-SWA_3

3947555 : 3983361

uncultured_Caudovirales_phage(51.43%)

capsid,protease,head,terminase,plate,portal,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038613042.1\|3947555_3948839_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.1e-139	58.8
WP_038613044.1\|3948946_3949588_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.4e-58	60.6
WP_038613046.1\|3949679_3950990_-	trigger factor	NA	NA	NA	NA
WP_038613048.1\|3951264_3951567_-	hypothetical protein	NA	NA	NA	NA
WP_157193318.1\|3952687_3953581_+	hypothetical protein	NA	NA	NA	NA
WP_157193319.1\|3953651_3954689_-\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	4.0e-151	80.6
WP_157193320.1\|3954688_3956443_-\|terminase	terminase	Q9ZXM5	Pseudomonas_virus	1.2e-285	81.4
WP_157193321.1\|3956594_3957449_+\|capsid	phage capsid protein	A0A2H4J928	uncultured_Caudovirales_phage	1.0e-91	64.1
WP_157193322.1\|3957476_3958550_+\|capsid	phage major capsid protein, P2 family	A0A2H4JCR7	uncultured_Caudovirales_phage	5.4e-143	73.6
WP_157193323.1\|3958553_3959255_+\|terminase	terminase	Q9ZXM2	Pseudomonas_virus	8.3e-76	62.7
WP_157193324.1\|3959358_3959823_+\|head	head completion/stabilization protein	A0A2H4JCS4	uncultured_Caudovirales_phage	2.1e-35	51.9
WP_157193325.1\|3959822_3960032_+\|tail	phage tail protein	A0A2H4J946	uncultured_Caudovirales_phage	1.1e-23	73.9
WP_157193326.1\|3960059_3960413_+	hypothetical protein	Q9ZXL8	Pseudomonas_virus	1.8e-26	55.6
WP_157193327.1\|3960414_3960693_+\|holin	phage holin family protein	Q9ZXL7	Pseudomonas_virus	2.6e-25	69.0
WP_157193328.1\|3960689_3961538_+	DUF3380 domain-containing protein	Q9ZXL6	Pseudomonas_virus	8.7e-88	63.4
WP_157193329.1\|3961565_3961772_+	hypothetical protein	NA	NA	NA	NA
WP_157193330.1\|3961768_3962212_+	DUF2570 domain-containing protein	Q9ZXL5	Pseudomonas_virus	1.8e-20	46.2
WP_157193331.1\|3962314_3962839_+\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	7.8e-55	70.3
WP_157193332.1\|3962831_3963284_+	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	5.9e-51	71.2
WP_157194778.1\|3963359_3963938_+\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	7.3e-46	60.8
WP_157193333.1\|3963934_3964288_+\|plate	baseplate assembly protein	A0A2H4JE52	uncultured_Caudovirales_phage	2.5e-44	82.5
WP_157193334.1\|3964284_3965202_+\|plate	baseplate assembly protein	Q9ZXK8	Pseudomonas_virus	6.7e-118	73.0
WP_157193335.1\|3965198_3965807_+\|tail	phage tail protein I	A0A2H4JAU2	uncultured_Caudovirales_phage	3.2e-76	69.3
WP_157193336.1\|3967196_3967745_+	hypothetical protein	B5TK80	Pseudomonas_phage	1.3e-15	38.9
WP_157193337.1\|3967852_3969025_+\|tail	phage tail protein	A0A2H4JCP8	uncultured_Caudovirales_phage	7.1e-197	86.4
WP_157193338.1\|3969072_3969588_+\|tail	phage major tail tube protein	A0A2H4J916	uncultured_Caudovirales_phage	6.9e-72	73.1
WP_157193339.1\|3969642_3969999_+\|tail	phage tail assembly protein	E5FFG7	Burkholderia_phage	3.1e-23	70.7
WP_133210031.1\|3970007_3970130_+\|tail	GpE family phage tail protein	A0A2H4JFK5	uncultured_Caudovirales_phage	2.5e-12	74.4
WP_157193340.1\|3970119_3972714_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	3.8e-174	47.4
WP_157193341.1\|3972720_3973161_+	oxidoreductase	A0A2H4JG54	uncultured_Caudovirales_phage	1.7e-63	82.9
WP_157194779.1\|3973250_3974417_+	phage late control D family protein	A0A2H4JAV0	uncultured_Caudovirales_phage	2.2e-166	76.0
WP_157193342.1\|3974452_3974614_-	hypothetical protein	NA	NA	NA	NA
WP_157193343.1\|3974743_3975091_-	DUF2511 domain-containing protein	NA	NA	NA	NA
WP_157193344.1\|3975100_3975466_-	helix-turn-helix domain-containing protein	A0A2H4JFL3	uncultured_Caudovirales_phage	8.5e-16	47.5
WP_157193345.1\|3975517_3975730_+	DNA-binding protein	A0A2H4JE67	uncultured_Caudovirales_phage	2.6e-09	54.5
WP_157193346.1\|3975759_3976233_+	hypothetical protein	A0A2H4JG61	uncultured_Caudovirales_phage	1.1e-50	63.4
WP_157193347.1\|3976229_3976523_+	transcriptional regulator	Q9ZXJ1	Pseudomonas_virus	2.4e-13	43.6
WP_157193348.1\|3976519_3976894_+	hypothetical protein	NA	NA	NA	NA
WP_157193349.1\|3976966_3977212_+	hypothetical protein	Q9ZXI9	Pseudomonas_virus	1.1e-16	54.3
WP_157194780.1\|3977223_3979950_+	bifunctional DNA primase/helicase	A0A2H4J936	uncultured_Caudovirales_phage	0.0e+00	77.7
WP_157193350.1\|3979999_3980143_+	hypothetical protein	NA	NA	NA	NA
WP_157193351.1\|3980193_3980991_+	hypothetical protein	A0A077K8T2	Ralstonia_phage	2.3e-34	36.4
WP_157193352.1\|3981005_3981374_+	hypothetical protein	NA	NA	NA	NA
WP_157193353.1\|3981681_3983361_+	DNA cytosine methyltransferase	Q9ZXI4	Pseudomonas_virus	1.4e-214	69.7

DBSCAN-SWA_4

4468446 : 4564886

uncultured_Caudovirales_phage(29.73%)

protease,lysis,plate,tRNA,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157194792.1\|4468446_4470222_-\|tRNA	aspartate--tRNA ligase	A0A1V0SIS0	Klosneuvirus	3.3e-12	26.1
WP_157193672.1\|4470316_4470538_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_038613875.1\|4470631_4470949_-	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_157194793.1\|4471206_4471680_-	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	2.8e-19	37.9
WP_157193673.1\|4472001_4472589_+	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	1.3e-10	47.6
WP_157193674.1\|4472656_4472863_-	hypothetical protein	NA	NA	NA	NA
WP_157193675.1\|4472866_4473292_-	HIT domain-containing protein	NA	NA	NA	NA
WP_157193676.1\|4474104_4475418_+	outer membrane porin, OprD family	NA	NA	NA	NA
WP_157193677.1\|4475588_4477304_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_157193678.1\|4477322_4478276_+	hypothetical protein	NA	NA	NA	NA
WP_157193679.1\|4478324_4479389_-	DNA polymerase IV	NA	NA	NA	NA
WP_157193680.1\|4480101_4482744_+	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
WP_157193681.1\|4482743_4484036_+	virulence factor family protein	NA	NA	NA	NA
WP_157193682.1\|4484084_4485983_-	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	1.1e-77	34.5
WP_157193683.1\|4486190_4487045_+	phosphotransferase	NA	NA	NA	NA
WP_038613904.1\|4487247_4488585_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_157193684.1\|4488674_4489145_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_157193685.1\|4489275_4489986_+	RNA-binding protein	NA	NA	NA	NA
WP_038613911.1\|4490033_4490495_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	6.9e-39	52.0
WP_157193686.1\|4490502_4491198_+\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_003222277.1\|4491261_4492041_-	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_038613917.1\|4492160_4493087_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_157193687.1\|4493083_4493449_-	diacylglycerol kinase	NA	NA	NA	NA
WP_038613921.1\|4493526_4494177_-	response regulator transcription factor	NA	NA	NA	NA
WP_157193688.1\|4494442_4495153_-	DTW domain-containing protein	NA	NA	NA	NA
WP_038613926.1\|4495391_4495808_+	hypothetical protein	NA	NA	NA	NA
WP_157193689.1\|4495810_4496011_-	hypothetical protein	NA	NA	NA	NA
WP_157193690.1\|4496407_4497526_+	cytochrome D ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_157193691.1\|4497533_4498001_-	recombination regulator RecX	NA	NA	NA	NA
WP_038613932.1\|4498009_4499077_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.4e-111	61.3
WP_157193692.1\|4499180_4499663_-	nicotinamide-nucleotide amidohydrolase family protein	B5TK85	Pseudomonas_phage	9.7e-60	79.2
WP_157193693.1\|4499722_4500190_-\|lysis	lysis protein	B5TK84	Pseudomonas_phage	2.6e-33	55.6
WP_157193694.1\|4500213_4500765_-	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	1.1e-75	72.5
WP_157193695.1\|4500793_4501825_-	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	8.5e-146	72.9
WP_157193696.1\|4501893_4502100_-\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	4.8e-24	76.1
WP_157193697.1\|4502074_4502920_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	9.0e-77	52.5
WP_157193698.1\|4502929_4504897_-	hypothetical protein	NA	NA	NA	NA
WP_157193699.1\|4505037_4505340_-\|tail	phage tail assembly protein	A0A2H4J873	uncultured_Caudovirales_phage	1.2e-20	54.9
WP_157193700.1\|4505349_4505859_-\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	1.9e-66	73.1
WP_157193701.1\|4505875_4507042_-\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	3.1e-184	83.1
WP_157193702.1\|4507138_4507600_-\|tail	phage tail protein	B5TK82	Pseudomonas_phage	1.2e-22	40.8
WP_157193703.1\|4509909_4510521_-\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	2.6e-65	67.8
WP_157193704.1\|4510522_4511404_-\|plate	baseplate assembly protein	A0A2H4JFK9	uncultured_Caudovirales_phage	5.6e-106	67.8
WP_157193705.1\|4511400_4511727_-\|plate	phage baseplate protein	A0A2H4JA09	uncultured_Caudovirales_phage	9.5e-35	66.7
WP_157193706.1\|4511797_4512358_-\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	2.2e-55	59.0
WP_157193707.1\|4512354_4512873_-	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	6.2e-20	39.1
WP_157193708.1\|4512869_4513226_-\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	6.1e-43	83.5
WP_157193709.1\|4513695_4514439_-	helix-turn-helix domain-containing protein	B5TK58	Pseudomonas_phage	3.1e-121	86.6
WP_157193710.1\|4514597_4517165_+	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	6.2e-28	22.7
WP_003252355.1\|4517305_4517629_+	Ferredoxin 1	NA	NA	NA	NA
WP_038613944.1\|4518160_4519168_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	8.6e-34	35.8
WP_157193711.1\|4519275_4520157_-	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	1.5e-05	33.3
WP_157193712.1\|4520337_4521015_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	8.9e-43	50.6
WP_038613949.1\|4521014_4521764_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.7e-66	52.2
WP_157193713.1\|4521751_4522810_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_157193714.1\|4522806_4523280_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_157193715.1\|4523357_4524206_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_157193716.1\|4524214_4525327_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	6.2e-33	28.8
WP_157193717.1\|4525434_4526349_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_157193718.1\|4526324_4527032_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_038613966.1\|4527028_4527307_-	cell division protein FtsB	NA	NA	NA	NA
WP_157193719.1\|4527470_4528760_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.9e-135	58.3
WP_107026008.1\|4528914_4529760_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	3.2e-50	42.0
WP_157193720.1\|4529763_4531392_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	6.9e-158	53.1
WP_157193721.1\|4531663_4532956_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_107026011.1\|4533073_4534021_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_157193722.1\|4534119_4537641_-	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	4.0e-187	35.5
WP_157193723.1\|4537749_4538379_-	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	2.0e-28	40.7
WP_157193724.1\|4538379_4539507_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_038613984.1\|4539509_4540286_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_038613986.1\|4540282_4540723_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_157193725.1\|4540833_4541889_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_010224837.1\|4541891_4542395_-	OmpH family outer membrane protein	NA	NA	NA	NA
WP_157193726.1\|4542439_4544800_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_157193727.1\|4544874_4546227_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_157193728.1\|4546269_4547460_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_157193729.1\|4547456_4548272_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_157193730.1\|4548271_4549027_-	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	1.3e-18	38.8
WP_045193626.1\|4549044_4549602_-	ribosome recycling factor	NA	NA	NA	NA
WP_010224848.1\|4549598_4550342_-	UMP kinase	NA	NA	NA	NA
WP_038614008.1\|4550523_4551387_-	elongation factor Ts	NA	NA	NA	NA
WP_038614011.1\|4551568_4552303_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_038614013.1\|4552644_4553427_+	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_157193731.1\|4553448_4556148_+	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_157193732.1\|4556170_4557364_+	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_157193733.1\|4557472_4558207_+	peptidase M12	NA	NA	NA	NA
WP_157193735.1\|4558365_4559097_+	peptidase M12	NA	NA	NA	NA
WP_157193737.1\|4559102_4560749_-	Na+/H+ antiporter	NA	NA	NA	NA
WP_038614024.1\|4560979_4561342_+	ArsC family reductase	NA	NA	NA	NA
WP_157193739.1\|4561384_4562419_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_157193741.1\|4562473_4563679_+	aminotransferase class V-fold PLP-dependent enzyme	Q2XUY6	environmental_halophage	5.8e-69	36.4
WP_157193743.1\|4563675_4564086_+	SufE family protein	NA	NA	NA	NA
WP_096335716.1\|4564064_4564886_-\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	4.7e-14	30.7

DBSCAN-SWA_5

4747123 : 4754889

Planktothrix_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038614373.1\|4747123_4747933_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.0e-24	32.5
WP_038616920.1\|4748178_4749153_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	7.5e-35	31.8
WP_157193973.1\|4749153_4749678_+	HAD hydrolase family protein	A0A140XBD6	Dickeya_phage	4.1e-27	47.4
WP_038614378.1\|4749686_4750259_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_157193975.1\|4750245_4750770_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_038614382.1\|4750770_4751496_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.4e-23	26.5
WP_157193977.1\|4751675_4753169_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_028942831.1\|4753246_4753555_+	ribosome-associated translation inhibitor RaiA	A0A0M7QCF2	Escherichia_phage	1.0e-06	35.2
WP_157193978.1\|4753567_4754032_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_157193981.1\|4754034_4754889_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.5e-07	31.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage