CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP037875	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence	0 crisprs	csa3	0	13
NZ_CP037877	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 chromosome, complete genome	2 crisprs	WYL,DinG,cas3,DEDDh,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	32	9
NZ_CP037876	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S3, complete sequence	0 crisprs	cas14j	0	12

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 51306

Stx2-converting_phage(18.18%)

integrase,transposase

attL 39828:39844|attR 61266:61282

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000624622.1\|668_1016_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_000381395.1\|1035_2607_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
WP_000470506.1\|2967_3483_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_001044069.1\|3630_4380_+	thioredoxin fold domain-containing protein	NA	NA	NA	NA
WP_000833503.1\|4405_4798_+	hypothetical protein	NA	NA	NA	NA
WP_000061015.1\|4820_5243_+	hypothetical protein	NA	NA	NA	NA
WP_000945974.1\|5301_5913_-	lipoprotein	NA	NA	NA	NA
WP_000593841.1\|6019_6829_+	DsbA family protein	NA	NA	NA	NA
WP_000281817.1\|6880_8140_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	7.1e-94	43.1
WP_001395519.1\|8123_8558_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.2e-21	41.1
WP_000963400.1\|8735_9350_+	hypothetical protein	NA	NA	NA	NA
WP_000694887.1\|9497_9851_+	hypothetical protein	NA	NA	NA	NA
WP_000502663.1\|10126_13462_+	hypothetical protein	NA	NA	NA	NA
WP_012817917.1\|13757_13979_+	hypothetical protein	NA	NA	NA	NA
WP_000537778.1\|14228_14615_+	hypothetical protein	NA	NA	NA	NA
WP_001447552.1\|14626_15052_-	hypothetical protein	NA	NA	NA	NA
WP_000534813.1\|15085_15559_-	hypothetical protein	NA	NA	NA	NA
WP_011011080.1\|15641_16001_-	hypothetical protein	NA	NA	NA	NA
WP_000974326.1\|16546_17944_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_001447551.1\|18206_19013_+	DUF4263 domain-containing protein	NA	NA	NA	NA
WP_001118621.1\|20018_20942_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	8.4e-177	100.0
WP_000613948.1\|21002_21176_+	hypothetical protein	NA	NA	NA	NA
WP_001089068.1\|21288_22494_-	tetracycline efflux MFS transporter Tet(B)	NA	NA	NA	NA
WP_001322387.1\|22572_23199_+	tetracycline resistance transcriptional repressor TetR(B)	NA	NA	NA	NA
WP_001447544.1\|23176_23863_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000460651.1\|23870_24257_-	hypothetical protein	NA	NA	NA	NA
WP_000562370.1\|24249_24570_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_001352368.1\|26570_27779_-\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
WP_011011079.1\|27911_28520_+	hypothetical protein	NA	NA	NA	NA
WP_000429174.1\|28769_29069_-	hypothetical protein	NA	NA	NA	NA
WP_000250919.1\|29416_30196_-	hypothetical protein	NA	NA	NA	NA
WP_011011078.1\|30251_31184_-	hypothetical protein	NA	NA	NA	NA
WP_000173534.1\|31180_31696_-	thermonuclease family protein	V5UN65	Mycobacterium_phage	7.1e-08	28.3
WP_000282148.1\|31919_33347_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-101	55.3
WP_011011077.1\|33475_33646_+	hypothetical protein	NA	NA	NA	NA
WP_000529857.1\|33670_34966_+	DUF1173 family protein	NA	NA	NA	NA
WP_000323423.1\|35003_35207_+	hypothetical protein	NA	NA	NA	NA
WP_010892342.1\|35261_36482_-	hypothetical protein	NA	NA	NA	NA
WP_000272280.1\|36484_36673_-	hypothetical protein	NA	NA	NA	NA
WP_000062400.1\|36841_37297_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_001233873.1\|38897_39449_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	1.2e-45	48.9
WP_001049170.1\|39445_40288_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
39828:39844	attL	NA	NA	NA	NA
WP_000098664.1\|40438_41101_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	6.8e-72	63.3
WP_001115167.1\|41467_41932_+	CaiF/GrlA family transcriptional regulator	NA	NA	NA	NA
WP_000809340.1\|41928_42546_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_000105680.1\|42867_44088_+	autotransporter strand-loop-strand O-heptosyltransferase	NA	NA	NA	NA
WP_053276064.1\|44080_47893_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_024168330.1\|47987_48329_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001089792.1\|48743_49553_+	EAL domain-containing protein	NA	NA	NA	NA
WP_105462163.1\|50093_51306_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	8.5e-145	86.5
61266:61282	attR	NA	NA	NA	NA

DBSCAN-SWA_2

65262 : 117566

Enterobacteria_phage(16.67%)

protease,integrase,transposase

attL 99725:99739|attR 119255:119269

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001582168.1\|65262_67389_-\|integrase	integrase	NA	NA	NA	NA
WP_000090709.1\|67375_68218_-\|transposase	transposase	NA	NA	NA	NA
WP_010892343.1\|68832_69501_+	hypothetical protein	NA	NA	NA	NA
WP_085012003.1\|69723_72732_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	64.5
WP_001196200.1\|72890_73472_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	5.5e-41	48.3
WP_000085084.1\|73548_74940_+	hypothetical protein	NA	NA	NA	NA
WP_001084041.1\|74936_77009_+	ATP-binding protein	NA	NA	NA	NA
WP_000493286.1\|77684_78014_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	2.4e-09	44.2
WP_000780222.1\|77994_78276_+	helix-turn-helix transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.3e-08	38.0
WP_000019452.1\|78553_79534_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	4.4e-184	98.5
WP_001118621.1\|79811_80735_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	8.4e-177	100.0
WP_001100942.1\|81134_81782_+	HAD-IB family hydrolase	NA	NA	NA	NA
WP_001176934.1\|82118_83360_-	tellurium resistance protein TerF	A0A2D1GNA9	Pseudoalteromonas_phage	4.8e-10	25.1
WP_000301240.1\|83444_84020_-	tellurium resistance cAMP binding protein TerE	K4JRX3	Caulobacter_phage	9.6e-30	41.6
WP_004026609.1\|84106_84685_-	tellurium resistance membrane protein TerD	K4JRX3	Caulobacter_phage	1.9e-33	40.8
WP_073528079.1\|84723_85764_-	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	4.1e-71	46.3
WP_004026604.1\|85787_86243_-	tellurium resistance membrane protein TerB	NA	NA	NA	NA
WP_042014824.1\|86265_87417_-	tellurium resistance system protein TerA	NA	NA	NA	NA
WP_042014825.1\|87413_87998_-	tellurium resistance protein TerZ	K4JRX3	Caulobacter_phage	2.0e-11	29.4
WP_042014827.1\|88308_89367_+	carbamoyl-phosphate synthase large chain	NA	NA	NA	NA
WP_042014831.1\|89378_90521_+	adenine/guanine phosphoribosyltransferase	A0A172Q0Y1	Acinetobacter_phage	1.8e-32	28.4
WP_004181732.1\|90513_91287_+	hypothetical protein	NA	NA	NA	NA
WP_004210251.1\|91288_92368_+\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	1.1e-39	33.8
WP_042014833.1\|92367_93324_+	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_042014837.1\|94127_94586_+	tellurium resistance protein TerW	NA	NA	NA	NA
WP_042014838.1\|94848_95043_-	hypothetical protein	NA	NA	NA	NA
WP_073528080.1\|95848_96487_+	VWA domain-containing protein	NA	NA	NA	NA
WP_032248957.1\|96511_97153_+	TerD family protein	A0A2P1N0C0	Streptomyces_phage	1.8e-05	25.1
WP_004026585.1\|97153_97792_+	VWA domain-containing protein	NA	NA	NA	NA
WP_032248959.1\|97884_98925_+	VWA domain-containing protein	NA	NA	NA	NA
WP_073528081.1\|98924_100658_+	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
99725:99739	attL	NA	NA	NA	NA
WP_032248920.1\|100685_102185_+	kinase	NA	NA	NA	NA
WP_000783215.1\|103587_103950_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_001114073.1\|103997_104351_-	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	4.1e-23	50.0
WP_001287388.1\|104971_105376_+	H-NS histone family protein	NA	NA	NA	NA
WP_089617545.1\|106143_106593_-	HNH endonuclease	A0A1S6KZY3	Salmonella_phage	7.5e-06	35.4
WP_089617546.1\|106900_107320_-	hypothetical protein	NA	NA	NA	NA
WP_001209044.1\|107425_108232_-	HNH endonuclease	G0X580	Salmonella_phage	1.3e-13	37.9
WP_000493077.1\|108637_108841_-	hypothetical protein	NA	NA	NA	NA
WP_000341067.1\|109253_109646_-	hypothetical protein	NA	NA	NA	NA
WP_011011074.1\|109712_109913_-	hypothetical protein	NA	NA	NA	NA
WP_000111572.1\|109902_110178_-	hypothetical protein	NA	NA	NA	NA
WP_000416123.1\|110325_110802_+	hypothetical protein	NA	NA	NA	NA
WP_001247564.1\|110837_110981_+	hypothetical protein	NA	NA	NA	NA
WP_001232452.1\|111058_112132_-	hypothetical protein	NA	NA	NA	NA
WP_000807689.1\|113616_114372_-	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	1.9e-134	94.8
WP_001324690.1\|115957_116170_-	hypothetical protein	NA	NA	NA	NA
WP_001086279.1\|116384_117566_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
119255:119269	attR	NA	NA	NA	NA

DBSCAN-SWA_3

128904 : 130158

Pseudomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001113001.1\|128904_130158_-	hypothetical protein	A0A0H5AWB1	Pseudomonas_phage	3.0e-12	29.7

DBSCAN-SWA_4

138008 : 143665

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000517883.1\|138008_139793_-	ATP-dependent helicase	S5MMD7	Bacillus_phage	2.1e-19	26.4
WP_000792088.1\|139974_140847_+	lipoprotein	NA	NA	NA	NA
WP_000880375.1\|141368_141623_+	hypothetical protein	NA	NA	NA	NA
WP_000166873.1\|141625_143665_-	ATP-dependent helicase	E3T5J8	Cafeteria_roenbergensis_virus	5.4e-27	26.2

DBSCAN-SWA_5

158800 : 159835

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000137273.1\|158800_159835_-	hypothetical protein	A0A0A7NPX4	Enterobacteria_phage	6.7e-42	34.3

DBSCAN-SWA_6

163081 : 164089

Aeromonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001278833.1\|163081_164089_-	peptide transporter	A0A1I9KFW9	Aeromonas_phage	3.9e-10	32.1

DBSCAN-SWA_7

179184 : 187993

Salmonella_phage(60.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001282731.1\|179184_180060_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.6e-60	43.5
WP_001015069.1\|180594_181671_+	hypothetical protein	A0A1P8DTT7	Salmonella_phage	7.8e-09	31.8
WP_000357614.1\|181688_181889_+	hypothetical protein	NA	NA	NA	NA
WP_000682872.1\|181885_182593_+	hypothetical protein	NA	NA	NA	NA
WP_001178650.1\|182875_183697_+	hypothetical protein	NA	NA	NA	NA
WP_001225593.1\|183711_184536_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A2P9J4Y7	Pectobacterium_phage	2.8e-46	37.6
WP_001281654.1\|184895_186053_+	DNA-binding protein	A0A2P9HXK7	Yersinia_phage	1.1e-19	24.6
WP_136571528.1\|186238_187993_+	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	1.2e-67	30.7

DBSCAN-SWA_8

192837 : 193719

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000097746.1\|192837_193719_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	6.5e-54	41.3

DBSCAN-SWA_9

198887 : 200179

Sphingobium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000178072.1\|198887_199592_-	hypothetical protein	A0A1W6DXB8	Sphingobium_phage	7.1e-11	25.2
WP_000902167.1\|199819_200179_-	hypothetical protein	M9UXL5	Escherichia_phage	2.9e-08	45.1

DBSCAN-SWA_10

203806 : 204103

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000581856.1\|203806_204103_+	toxin-plasmid maintenance system killer protein	A0A222YWE2	Escherichia_phage	4.9e-06	35.1

DBSCAN-SWA_11

211589 : 214589

Salmonella_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011011060.1\|211589_212321_+	hypothetical protein	Q71T76	Escherichia_phage	3.3e-67	57.1
WP_001058453.1\|212317_212629_+	hypothetical protein	NA	NA	NA	NA
WP_001395478.1\|212659_213184_+	HNH endonuclease	C6ZR29	Salmonella_phage	6.2e-44	62.8
WP_000478449.1\|213214_213823_+	hypothetical protein	NA	NA	NA	NA
WP_000055244.1\|213838_214192_+	hypothetical protein	NA	NA	NA	NA
WP_011011059.1\|214268_214589_+	hypothetical protein	S4TRP7	Salmonella_phage	5.3e-06	40.0

DBSCAN-SWA_12

221198 : 222404

Yersinia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000108723.1\|221198_222404_+	DNA-binding protein	A0A2P9HXK7	Yersinia_phage	2.0e-13	27.5

DBSCAN-SWA_13

227907 : 229819

Clostridioides_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011011085.1\|227907_228621_-	NERD domain-containing protein	A0A2R2ZH57	Clostridioides_phage	5.7e-08	36.4
WP_000476770.1\|228637_229819_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	7.5e-05	28.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP037877

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP037877_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP037877_1

3012915-3014390

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

23 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP037877_1

>merge|NZ_CP037877|1|3012915-3014390|CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACATTTTTCAGCCCTTGTCGACTGCGGAACGCCCCTCGGTTTATCCCCGCTGGCGCGGGGAACACGCGAAATAGTGGGGAAAAACCCCTGGTTAACCCGGTTTATCCCCGCTGGCGCGGGAAACACTAGGCCTTGATACCATCGCTCGCACCTCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACGTTTATTACTGCTTAGTTAATTAATGGGTTGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGGCGAATAATCTCTAATAGTCTCAATTCGTTCGGTTTATCCCCGCTGGCGCGGGGAACACTAAATCTGGCGTCGAGACATTCGAAATAGTGCCGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTTGATTTTGCTGCGATGTTATAACCAGACGGTTTATCCCCGCTGGCGCGGGGAACACTATCCACATATACCCGCAATCATATTCAAGAACGGTTTATCCCCGCTGGCGCGGGGAACACAATCACTGCGGGGGTATTTAGCGGAAACGGCTCGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACACGCACCTCGAAACGGTTTTAAAACACTACCGTTTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGACCGATGGGGCCAACATCGCCGAACGTGGCGGTTTATCCCCGCTGGCGCGGGGAACACGTTACGTTCGGTAAATGGAAAGCGGCGAATATCGGTTTATCCCCGCTGGCGCGGGGAACACCCAGAAAGTGCCGGTAGTGCCTGATGAACGACCGGTTTATCCCCGCTGGCGCGGGGAACACCGCGCCCACTTCCGTAAAATACAGATAATCCACGGTTTATCCCCGCTGGCGCGGGGAACACGGCAGCGGGCGAGGCAAACACATTCGGGGCGTCGGTTTATCCCCGCTGGCGCGGGGAACACGGTAATTTCTCATCTAACAGCCTGTACGCCTCAGGTTTATCCCCGCTGGCGCGGGGAACACGAATCTAATGCAACAGATGAATAAACACGTAACGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTATCGTCAATGCGAAATTTTCCGCGACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCCCATTCACCAACAACAATATCGCCCTGCAACGGTTTATCCCCGCTGGCGCGGGGAACACACTTCCTTCAGTCTTAACGATAATCCGCAACGCGGTTTATCCCCGCTGGCGCGGGGAACACGCAAAATAGCGATGAGCTGGCTACGCCCACTGGCGGTTTATCCCCGCTGGCGCGGGGAACACCAGCACGAAAAATTATTTACTGTCGTTGCTCACGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP037877|1|1|3012915-3013493|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAATCTGGCGTCGAGACATTCGAAATAGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTTCCTTCAGTCTTAACGATAATCCGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAAAATAGCGATGAGCTGGCTACGCCCACTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA


>NZ_CP037877|1|1|3012915-3013492|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAATCTGGCGTCGAGACATTCGAAATAGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACAC	AATTAAAGCCGAGGGTGGCACCGCGCCTTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTTCCTTCAGTCTTAACGATAATCCGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAAAATAGCGATGAGCTGGCTACGCCCACTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA


>NZ_CP037877|1|1|3012976-3014390|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAATCTGGCGTCGAGACATTCGAAATAGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATCGAGTAACGTGCGCTGGAACGCGTC
GGCGCGGGGAACACAATTAAAGCCGAGGG	TGGCACCGCGCCTTATTCGGTTTATCCCCGCT
GGCGCGGGGAACACGCACCTCGAAACGGT	TTTAAAACACTACCGTTTCGGTTTATCCCCGCT
GGCGCGGGGAACACTGGACCGATGGGGCC	AACATCGCCGAACGTGGCGGTTTATCCCCGCT
GGCGCGGGGAACACGTTACGTTCGGTAAA	TGGAAAGCGGCGAATATCGGTTTATCCCCGCT
GGCGCGGGGAACACCCAGAAAGTGCCGGT	AGTGCCTGATGAACGACCGGTTTATCCCCGCT
GGCGCGGGGAACACCGCGCCCACTTCCGT	AAAATACAGATAATCCACGGTTTATCCCCGCT
GGCGCGGGGAACACGGCAGCGGGCGAGGC	AAACACATTCGGGGCGTCGGTTTATCCCCGCT
GGCGCGGGGAACACGGTAATTTCTCATCT	AACAGCCTGTACGCCTCAGGTTTATCCCCGCT
GGCGCGGGGAACACGAATCTAATGCAACA	GATGAATAAACACGTAACGGTTTATCCCCGCT
GGCGCGGGGAACACTCTTTATCGTCAATG	CGAAATTTTCCGCGACGCGGTTTATCCCCGCT
GGCGCGGGGAACACTCCCATTCACCAACA	ACAATATCGCCCTGCAACGGTTTATCCCCGCT
GGCGCGGGGAACACACTTCCTTCAGTCTT	AACGATAATCCGCAACGCGGTTTATCCCCGCT
GGCGCGGGGAACACGCAAAATAGCGATGA	GCTGGCTACGCCCACTGGCGGTTTATCCCCGCT
GGCGCGGGGAACACCAGCACGAAAAATTA	TTTACTGTCGTTGCTCACGGTTTATCCCCGCT
GGCGCGGGGAACAC

>NZ_CP037877|1|2|3013506-3014390|CRT
	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAATCTGGCGTCGAGACATTCGAAATAGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACAC	AATTAAAGCCGAGGGTGGCACCGCGCCTTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTTCCTTCAGTCTTAACGATAATCCGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAAAATAGCGATGAGCTGGCTACGCCCACTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP037877|1|2|3013567-3014390|CRISPRCasFinder
	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAATCTGGCGTCGAGACATTCGAAATAGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTTCCTTCAGTCTTAACGATAATCCGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAAAATAGCGATGAGCTGGCTACGCCCACTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP037877.1\|WP_000517480.1\|3007777_3008089_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP037877.1\|WP_001219245.1\|3006569_3007049_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP037877.1\|WP_001221538.1\|3004781_3005543_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP037877.1\|WP_000281486.1\|3015696_3016347_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP037877.1\|WP_000368584.1\|3018714_3020271_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP037877.1\|WP_001173663.1\|3008653_3009259_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP037877.1\|WP_001145543.1\|3023391_3024345_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP037877.1\|WP_000144831.1\|3014779_3015700_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP037877.1\|WP_000080404.1\|3024432_3025167_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP037877.1\|WP_001518648.1\|3014486_3014780_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP037877.1\|WP_000029738.1\|3020282_3022946_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP037877.1\|WP_000085114.1\|3016328_3017075_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP037877.1\|WP_000134246.1\|3005523_3006573_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP037877.1\|WP_000490481.1\|3011853_3012900_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP037877.1\|WP_000372384.1\|3010694_3011603_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP037877.1\|WP_001118109.1\|3008279_3008636_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP037877.1\|WP_000117946.1\|3018157_3018718_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP037877.1\|WP_001092263.1\|3009245_3010685_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP037877.1\|WP_000206415.1\|3017085_3018144_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP037877.1\|WP_000741650.1\|3007048_3007759_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670

Protein	Function_ID	Function_description	E-value
NZ_CP037877.1\|WP_000517480.1\|3007777_3008089_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP037877.1\|WP_001219245.1\|3006569_3007049_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
NZ_CP037877.1\|WP_001221538.1\|3004781_3005543_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP037877.1\|WP_000281486.1\|3015696_3016347_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
NZ_CP037877.1\|WP_000368584.1\|3018714_3020271_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP037877.1\|WP_001173663.1\|3008653_3009259_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP037877.1\|WP_001145543.1\|3023391_3024345_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP037877.1\|WP_000144831.1\|3014779_3015700_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.59811e-156
NZ_CP037877.1\|WP_000080404.1\|3024432_3025167_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
NZ_CP037877.1\|WP_001518648.1\|3014486_3014780_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP037877.1\|WP_000029738.1\|3020282_3022946_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP037877.1\|WP_000085114.1\|3016328_3017075_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.90971e-48
NZ_CP037877.1\|WP_000134246.1\|3005523_3006573_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP037877.1\|WP_000490481.1\|3011853_3012900_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP037877.1\|WP_000372384.1\|3010694_3011603_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP037877.1\|WP_001118109.1\|3008279_3008636_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NZ_CP037877.1\|WP_000117946.1\|3018157_3018718_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP037877.1\|WP_001092263.1\|3009245_3010685_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP037877.1\|WP_000206415.1\|3017085_3018144_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
NZ_CP037877.1\|WP_000741650.1\|3007048_3007759_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119

>NZ_CP037877.1|WP_000490481.1|3011853_3012900_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP037877.1|WP_000372384.1|3010694_3011603_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP037877.1|WP_001092263.1|3009245_3010685_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP037877.1|WP_001173663.1|3008653_3009259_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP037877.1|WP_001118109.1|3008279_3008636_-|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP037877.1|WP_000517480.1|3007777_3008089_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP037877.1|WP_000741650.1|3007048_3007759_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP037877.1|WP_001219245.1|3006569_3007049_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP037877.1|WP_000134246.1|3005523_3006573_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP037877.1|WP_001221538.1|3004781_3005543_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP037877.1|WP_001518648.1|3014486_3014780_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP037877.1|WP_000144831.1|3014779_3015700_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRAVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP037877.1|WP_000281486.1|3015696_3016347_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>NZ_CP037877.1|WP_000085114.1|3016328_3017075_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP037877.1|WP_000206415.1|3017085_3018144_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NZ_CP037877.1|WP_000117946.1|3018157_3018718_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP037877.1|WP_000368584.1|3018714_3020271_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NZ_CP037877.1|WP_000029738.1|3020282_3022946_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP037877.1|WP_001145543.1|3023391_3024345_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP037877.1|WP_000080404.1|3024432_3025167_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP037877_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP037877_2

3030523-3032138

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

26 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP037877_2

>merge|NZ_CP037877|2|3030523-3032138|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACATCTTCATATTGCGTGACGCTGCCGATGAACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTATCAGCTAACCATTTCCAGAACTCGTCCGGTTTATCCCTGCTGGCGCGGGGAACACTATAATATGAATTAATTTTTGCGCATAACCTGCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCCGTTCTGCCTCTTCGCACTCTCGATCAACGGTTTATCCCCGCTGGCGCGGGGAACACTGCGTAATGGGCTACCTGAACTTCACATATCCCGGTTTATCCCCGCTAGCGCGGGGAACATATTAAGCGCGCAAAGTTTGGGTTAATTGGACACGGTTTATCCCCGCTGGCGCGGGGAACACCGTATTCGTCACACAGCCCCGTCCAGAAATGACGGTTTATCCCCGCTGGCACGGGGAACACTAACGAACTGAATAAAATGTCAGAAAGTGACGCGGCTTATCCCCGCTGGCGCGGGGAACACGCAGCTTAGCGACGAAATTAAAACCGAACTCACCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCAGTGACTACAGAAGCGTCTCTATCGGGGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGATAAACAACCGCATAGCCTCTTTCGTTTCGATTTATCCCTGCTGGCGCGGGGAACACTGCTCAATAACGTCGTAAATAGCGTAAGCTGGCGGTTTATCCCCGCTGGCGCGGGGAACACTATTTCGCCTTCGGCACTGACGTCACCGTCAACGGTTTATCCCCGCTGGCGCGGGGAACACGTCGCGTTCGTTGCCGGTATAGACCAGCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACATCGAATCGAAACCCCAGCCACAGAAATAATTCGGTTTATCCCCGCTGGCGCGGGGAACACATCGAATCGAAACCCCAGCCACAGAAATAATTCGGTTTATCCCCGCTGGCGCGGGGAACACGCTCATGTCAAACGCCATCAGCGTTCCGGCATCGGTTTATCCCCGCTAGCGCGGGGAACACAATCGCCAGCCTCGGAAATATTCCATCCTCCGCGGTTTATCCCCGCTGGCGCGGGGAACACAGGAACTAAACAGCCTGACCGTTGAGGATCTGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGGACAAATCTTTTTTTTCCTGTTCCTGTTCGGTTTATCCCCGCTGGCGCGGGGAACACGGGCACTATGAACGGATCGGCGCTGATGCCGGCGGTTTATCCCCGCTGGCGCGGGGAACACGGTAAAGCCACACCATTTTTTATTGACCTCGCCGGTTTATCCCCGCTGGCGCGGGGAACACCTAGGAGGCGTAATGAATACTACGTATCAAAACGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTGGCCTCAAATAAATTCGAGCGCTGGAGCGGTTTATCCCCGCTGGCGCGGGGAACACGAAACGTAAACAGGGTAAGATACAACTCTGCACGGTTTATCCCCGCTGGCGCGGGGAACACTGTAAAGGGTGGTCTGGAAGGGGATCGGCAAACGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP037877|2|3|3030523-3032138|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCTCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGTAAACAGGGTAAGATACAACTCTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAAAGGGTGGTCTGGAAGGGGATCGGCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP037877|2|3|3030523-3032138|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCTCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGTAAACAGGGTAAGATACAACTCTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAAAGGGTGGTCTGGAAGGGGATCGGCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP037877|2|2|3030584-3032138|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCTCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGTAAACAGGGTAAGATACAACTCTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAAAGGGTGGTCTGGAAGGGGATCGGCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP037877.1\|WP_000210449.1\|3036487_3037288_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP037877.1\|WP_001532579.1\|3038055_3038352_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP037877.1\|WP_000186400.1\|3042396_3045153_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP037877.1\|WP_000080404.1\|3024432_3025167_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP037877.1\|WP_001145543.1\|3023391_3024345_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP037877.1\|WP_000036734.1\|3033241_3034540_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP037877.1\|WP_000480218.1\|3038317_3038674_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP037877.1\|WP_000226838.1\|3038757_3040992_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP037877.1\|WP_001199961.1\|3032434_3033106_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP037877.1\|WP_001290660.1\|3025242_3026955_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP037877.1\|WP_000108313.1\|3029177_3029540_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP037877.1\|WP_000368584.1\|3018714_3020271_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP037877.1\|WP_000029738.1\|3020282_3022946_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP037877.1\|WP_000046849.1\|3041043_3042339_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP037877.1\|WP_001208013.1\|3029627_3030425_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP037877.1\|WP_000210927.1\|3026954_3028754_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP037877.1\|WP_000706479.1\|3045196_3046339_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP037877.1\|WP_000117946.1\|3018157_3018718_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP037877.1\|WP_000210863.1\|3034622_3036260_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP037877.1\|WP_000206415.1\|3017085_3018144_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843

Protein	Function_ID	Function_description	E-value
NZ_CP037877.1\|WP_000210449.1\|3036487_3037288_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
NZ_CP037877.1\|WP_001532579.1\|3038055_3038352_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.63617e-13
NZ_CP037877.1\|WP_000186400.1\|3042396_3045153_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP037877.1\|WP_000080404.1\|3024432_3025167_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
NZ_CP037877.1\|WP_001145543.1\|3023391_3024345_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP037877.1\|WP_000036734.1\|3033241_3034540_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP037877.1\|WP_000480218.1\|3038317_3038674_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NZ_CP037877.1\|WP_000226838.1\|3038757_3040992_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP037877.1\|WP_001199961.1\|3032434_3033106_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP037877.1\|WP_001290660.1\|3025242_3026955_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP037877.1\|WP_000108313.1\|3029177_3029540_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP037877.1\|WP_000368584.1\|3018714_3020271_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP037877.1\|WP_000029738.1\|3020282_3022946_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP037877.1\|WP_000046849.1\|3041043_3042339_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP037877.1\|WP_001208013.1\|3029627_3030425_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	8.44116e-102
NZ_CP037877.1\|WP_000210927.1\|3026954_3028754_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP037877.1\|WP_000706479.1\|3045196_3046339_-\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP037877.1\|WP_000117946.1\|3018157_3018718_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP037877.1\|WP_000210863.1\|3034622_3036260_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP037877.1\|WP_000206415.1\|3017085_3018144_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131

>NZ_CP037877.1|WP_001208013.1|3029627_3030425_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDSSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP037877.1|WP_000108313.1|3029177_3029540_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP037877.1|WP_000210927.1|3026954_3028754_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP037877.1|WP_001290660.1|3025242_3026955_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP037877.1|WP_000080404.1|3024432_3025167_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP037877.1|WP_001145543.1|3023391_3024345_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP037877.1|WP_000029738.1|3020282_3022946_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP037877.1|WP_000368584.1|3018714_3020271_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NZ_CP037877.1|WP_000117946.1|3018157_3018718_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP037877.1|WP_000206415.1|3017085_3018144_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NZ_CP037877.1|WP_001199961.1|3032434_3033106_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP037877.1|WP_000036734.1|3033241_3034540_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP037877.1|WP_000210863.1|3034622_3036260_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP037877.1|WP_000210449.1|3036487_3037288_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP037877.1|WP_001532579.1|3038055_3038352_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRMVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFKRHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>NZ_CP037877.1|WP_000480218.1|3038317_3038674_-|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP037877.1|WP_000226838.1|3038757_3040992_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP037877.1|WP_000046849.1|3041043_3042339_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP037877.1|WP_000186400.1|3042396_3045153_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP037877.1|WP_000706479.1|3045196_3046339_-|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP037877_1	1.13\|3013673\|32\|NZ_CP037877\|PILER-CR	3013673-3013704	32	CP051275	Salmonella phage SW-37, complete genome	24295-24326	1	0.969
NZ_CP037877_1	1.13\|3013673\|32\|NZ_CP037877\|PILER-CR	3013673-3013704	32	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44002	1	0.969
NZ_CP037877_1	1.27\|3013658\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3013658-3013689	32	CP051275	Salmonella phage SW-37, complete genome	24295-24326	1	0.969
NZ_CP037877_1	1.27\|3013658\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3013658-3013689	32	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44002	1	0.969
NZ_CP037877_2	2.5\|3030796\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3030796-3030827	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
NZ_CP037877_2	2.5\|3030796\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3030796-3030827	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
NZ_CP037877_2	2.11\|3031163\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031163-3031194	32	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130783-130814	2	0.938
NZ_CP037877_1	1.13\|3013673\|32\|NZ_CP037877\|PILER-CR	3013673-3013704	32	JQ182729	Enterobacterial phage mEp390, complete genome	23951-23982	3	0.906
NZ_CP037877_1	1.27\|3013658\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3013658-3013689	32	JQ182729	Enterobacterial phage mEp390, complete genome	23951-23982	3	0.906
NZ_CP037877_1	1.10\|3013493\|28\|NZ_CP037877\|PILER-CR	3013493-3013520	28	NC_009927	Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence	337987-338014	5	0.821
NZ_CP037877_1	1.15\|3013795\|32\|NZ_CP037877\|PILER-CR	3013795-3013826	32	MT774487	Salmonella phage MG40, complete genome	21746-21777	6	0.812
NZ_CP037877_1	1.29\|3013780\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3013780-3013811	32	MT774487	Salmonella phage MG40, complete genome	21746-21777	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	850282-850313	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	887728-887759	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	856045-856076	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	835457-835488	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	953948-953979	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	431895-431926	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	843687-843718	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	833486-833517	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	457962-457993	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1502459-1502490	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1188725-1188756	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1094940-1094971	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	574071-574102	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	758103-758134	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	92938-92969	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1622461-1622492	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	174090-174121	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	996227-996258	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	856529-856560	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1026857-1026888	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	801217-801248	6	0.812
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	887731-887762	6	0.812
NZ_CP037877_1	1.9\|3013432\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3013432-3013463	32	NZ_CP013929	Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence	188177-188208	7	0.781
NZ_CP037877_1	1.9\|3013432\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3013432-3013463	32	CP013931	Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence	192938-192969	7	0.781
NZ_CP037877_1	1.9\|3013432\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3013432-3013463	32	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	188204-188235	7	0.781
NZ_CP037877_1	1.15\|3013795\|32\|NZ_CP037877\|PILER-CR	3013795-3013826	32	JQ288021	Salmonella phage SPN3UB, complete genome	39452-39483	7	0.781
NZ_CP037877_1	1.15\|3013795\|32\|NZ_CP037877\|PILER-CR	3013795-3013826	32	MH370364	Salmonella phage S107, complete genome	29959-29990	7	0.781
NZ_CP037877_1	1.15\|3013795\|32\|NZ_CP037877\|PILER-CR	3013795-3013826	32	MH370382	Salmonella phage S135, complete genome	29959-29990	7	0.781
NZ_CP037877_1	1.15\|3013795\|32\|NZ_CP037877\|PILER-CR	3013795-3013826	32	MH370383	Salmonella phage S137, complete genome	29959-29990	7	0.781
NZ_CP037877_1	1.17\|3013917\|32\|NZ_CP037877\|PILER-CR	3013917-3013948	32	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	535406-535437	7	0.781
NZ_CP037877_1	1.19\|3014039\|32\|NZ_CP037877\|PILER-CR	3014039-3014070	32	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	29048-29079	7	0.781
NZ_CP037877_1	1.19\|3014039\|32\|NZ_CP037877\|PILER-CR	3014039-3014070	32	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	142294-142325	7	0.781
NZ_CP037877_1	1.29\|3013780\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3013780-3013811	32	JQ288021	Salmonella phage SPN3UB, complete genome	39452-39483	7	0.781
NZ_CP037877_1	1.29\|3013780\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3013780-3013811	32	MH370364	Salmonella phage S107, complete genome	29959-29990	7	0.781
NZ_CP037877_1	1.29\|3013780\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3013780-3013811	32	MH370382	Salmonella phage S135, complete genome	29959-29990	7	0.781
NZ_CP037877_1	1.29\|3013780\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3013780-3013811	32	MH370383	Salmonella phage S137, complete genome	29959-29990	7	0.781
NZ_CP037877_1	1.31\|3013902\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3013902-3013933	32	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	535406-535437	7	0.781
NZ_CP037877_1	1.33\|3014024\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3014024-3014055	32	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	29048-29079	7	0.781
NZ_CP037877_1	1.33\|3014024\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3014024-3014055	32	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	142294-142325	7	0.781
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NZ_CP030829	Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence	360377-360408	7	0.781
NZ_CP037877_2	2.21\|3031773\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031773-3031804	32	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	208454-208485	7	0.781
NZ_CP037877_2	2.21\|3031773\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031773-3031804	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	449563-449594	7	0.781
NZ_CP037877_2	2.21\|3031773\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031773-3031804	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	167100-167131	7	0.781
NZ_CP037877_1	1.2\|3013005\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3013005-3013036	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
NZ_CP037877_1	1.8\|3013371\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3013371-3013402	32	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	8862-8893	8	0.75
NZ_CP037877_1	1.8\|3013371\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3013371-3013402	32	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	151600-151631	8	0.75
NZ_CP037877_1	1.18\|3013978\|32\|NZ_CP037877\|PILER-CR	3013978-3014009	32	NZ_CP016179	Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence	203354-203385	8	0.75
NZ_CP037877_1	1.32\|3013963\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3013963-3013994	32	NZ_CP016179	Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence	203354-203385	8	0.75
NZ_CP037877_2	2.8\|3030979\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3030979-3031010	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	135469-135500	8	0.75
NZ_CP037877_2	2.8\|3030979\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3030979-3031010	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	11654-11685	8	0.75
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	43093-43124	8	0.75
NZ_CP037877_2	2.13\|3031285\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031285-3031316	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	152052-152083	8	0.75
NZ_CP037877_2	2.14\|3031346\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031346-3031377	32	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	1098771-1098802	8	0.75
NZ_CP037877_2	2.14\|3031346\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031346-3031377	32	NZ_CP014128	Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence	160189-160220	8	0.75
NZ_CP037877_2	2.14\|3031346\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031346-3031377	32	NC_014561	Pantoea vagans C9-1 plasmid pPag1, complete sequence	156443-156474	8	0.75
NZ_CP037877_2	2.14\|3031346\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031346-3031377	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	137983-138014	8	0.75
NZ_CP037877_2	2.17\|3031529\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031529-3031560	32	LQ277707	Sequence 2 from Patent WO2016071503	12422-12453	8	0.75
NZ_CP037877_2	2.17\|3031529\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031529-3031560	32	LZ998055	JP 2017534684-A/2: Phage Therapy	12422-12453	8	0.75
NZ_CP037877_2	2.18\|3031590\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031590-3031621	32	CP001770	Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence	145771-145802	8	0.75
NZ_CP037877_1	1.15\|3013795\|32\|NZ_CP037877\|PILER-CR	3013795-3013826	32	MK448228	Klebsiella phage ST15-VIM1phi2.1, complete genome	32866-32897	9	0.719
NZ_CP037877_1	1.21\|3014161\|32\|NZ_CP037877\|PILER-CR	3014161-3014192	32	MT162468	Synechococcus phage S-H25, complete genome	69929-69960	9	0.719
NZ_CP037877_1	1.29\|3013780\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3013780-3013811	32	MK448228	Klebsiella phage ST15-VIM1phi2.1, complete genome	32866-32897	9	0.719
NZ_CP037877_1	1.35\|3014146\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3014146-3014177	32	MT162468	Synechococcus phage S-H25, complete genome	69929-69960	9	0.719
NZ_CP037877_2	2.14\|3031346\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031346-3031377	32	NZ_CP045722	Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence	332-363	9	0.719
NZ_CP037877_2	2.14\|3031346\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031346-3031377	32	NZ_CP022519	Pantoea vagans strain FBS135 plasmid pPant3, complete sequence	62976-63007	9	0.719
NZ_CP037877_2	2.14\|3031346\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031346-3031377	32	NZ_CP028351	Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence	144976-145007	9	0.719
NZ_CP037877_2	2.19\|3031651\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031651-3031682	32	MN062720	Microbacterium phage FuzzBuster, complete genome	19374-19405	9	0.719
NZ_CP037877_2	2.20\|3031712\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031712-3031743	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
NZ_CP037877_2	2.21\|3031773\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031773-3031804	32	DQ674738	Aeromonas phage phiO18P, complete genome	15707-15738	9	0.719
NZ_CP037877_2	2.21\|3031773\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031773-3031804	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	380725-380756	9	0.719
NZ_CP037877_2	2.21\|3031773\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031773-3031804	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153785-153816	9	0.719
NZ_CP037877_2	2.22\|3031834\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031834-3031865	32	MN693046	Marine virus AFVG_25M413, complete genome	4323-4354	9	0.719
NZ_CP037877_2	2.22\|3031834\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031834-3031865	32	MN693008	Marine virus AFVG_117M9, complete genome	4316-4347	9	0.719
NZ_CP037877_1	1.1\|3012944\|32\|NZ_CP037877\|CRISPRCasFinder,CRT	3012944-3012975	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
NZ_CP037877_1	1.1\|3012944\|32\|NZ_CP037877\|CRISPRCasFinder,CRT	3012944-3012975	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
NZ_CP037877_1	1.13\|3013673\|32\|NZ_CP037877\|PILER-CR	3013673-3013704	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	153476-153507	10	0.688
NZ_CP037877_1	1.21\|3014161\|32\|NZ_CP037877\|PILER-CR	3014161-3014192	32	LN681539	Clostridium phage phiCD505, complete genome	8933-8964	10	0.688
NZ_CP037877_1	1.21\|3014161\|32\|NZ_CP037877\|PILER-CR	3014161-3014192	32	JX145341	Clostridium phage phiMMP02, complete genome	8932-8963	10	0.688
NZ_CP037877_1	1.21\|3014161\|32\|NZ_CP037877\|PILER-CR	3014161-3014192	32	NC_011398	Clostridium phage phiCD27, complete genome	8924-8955	10	0.688
NZ_CP037877_1	1.21\|3014161\|32\|NZ_CP037877\|PILER-CR	3014161-3014192	32	NC_048642	Clostridium phage CDKM9, complete genome	8871-8902	10	0.688
NZ_CP037877_1	1.21\|3014161\|32\|NZ_CP037877\|PILER-CR	3014161-3014192	32	KX228400	Clostridium phage CDKM15, complete genome	9066-9097	10	0.688
NZ_CP037877_1	1.27\|3013658\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3013658-3013689	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	153476-153507	10	0.688
NZ_CP037877_1	1.35\|3014146\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3014146-3014177	32	LN681539	Clostridium phage phiCD505, complete genome	8933-8964	10	0.688
NZ_CP037877_1	1.35\|3014146\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3014146-3014177	32	JX145341	Clostridium phage phiMMP02, complete genome	8932-8963	10	0.688
NZ_CP037877_1	1.35\|3014146\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3014146-3014177	32	NC_011398	Clostridium phage phiCD27, complete genome	8924-8955	10	0.688
NZ_CP037877_1	1.35\|3014146\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3014146-3014177	32	NC_048642	Clostridium phage CDKM9, complete genome	8871-8902	10	0.688
NZ_CP037877_1	1.35\|3014146\|32\|NZ_CP037877\|CRT,CRISPRCasFinder	3014146-3014177	32	KX228400	Clostridium phage CDKM15, complete genome	9066-9097	10	0.688
NZ_CP037877_2	2.1\|3030552\|32\|NZ_CP037877\|CRISPRCasFinder,CRT	3030552-3030583	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
NZ_CP037877_2	2.4\|3030735\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3030735-3030766	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
NZ_CP037877_2	2.19\|3031651\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031651-3031682	32	NZ_CP019257	Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence	20006-20037	10	0.688
NZ_CP037877_2	2.19\|3031651\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031651-3031682	32	NZ_CP019274	Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence	9024-9055	10	0.688
NZ_CP037877_2	2.19\|3031651\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031651-3031682	32	NZ_CP019275	Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence	27130-27161	10	0.688
NZ_CP037877_2	2.19\|3031651\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031651-3031682	32	NZ_CP019279	Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence	19363-19394	10	0.688
NZ_CP037877_2	2.19\|3031651\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031651-3031682	32	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	23427-23458	10	0.688
NZ_CP037877_2	2.19\|3031651\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031651-3031682	32	NC_049342	Escherichia phage 500465-1, complete genome	24342-24373	10	0.688
NZ_CP037877_2	2.19\|3031651\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031651-3031682	32	KY271398	Klebsiella phage 4 LV-2017, complete genome	28240-28271	10	0.688
NZ_CP037877_2	2.19\|3031651\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031651-3031682	32	CP025900	Escherichia phage sp., complete genome	24342-24373	10	0.688
NZ_CP037877_2	2.24\|3031956\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031956-3031987	32	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	1134787-1134818	10	0.688
NZ_CP037877_2	2.21\|3031773\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031773-3031804	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	234768-234799	11	0.656
NZ_CP037877_2	2.21\|3031773\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3031773-3031804	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	299431-299462	11	0.656
NZ_CP037877_2	2.26\|3032078\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3032078-3032109	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1885546-1885577	11	0.656
NZ_CP037877_2	2.26\|3032078\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3032078-3032109	32	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	56201-56232	11	0.656
NZ_CP037877_2	2.26\|3032078\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3032078-3032109	32	NZ_CP040822	Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence	83399-83430	11	0.656
NZ_CP037877_2	2.26\|3032078\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3032078-3032109	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1487158-1487189	11	0.656
NZ_CP037877_2	2.26\|3032078\|32\|NZ_CP037877\|CRISPRCasFinder,CRT,PILER-CR	3032078-3032109	32	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	597699-597730	11	0.656

1. spacer 1.13|3013673|32|NZ_CP037877|PILER-CR matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cggaccgatggggccaacatcgccgaacgtgg	Protospacer
.*******************************

2. spacer 1.13|3013673|32|NZ_CP037877|PILER-CR matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggaccgatggggccaacatcgccgaatgtgg	Protospacer
***************************.****

3. spacer 1.27|3013658|32|NZ_CP037877|CRT,CRISPRCasFinder matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cggaccgatggggccaacatcgccgaacgtgg	Protospacer
.*******************************

4. spacer 1.27|3013658|32|NZ_CP037877|CRT,CRISPRCasFinder matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggaccgatggggccaacatcgccgaatgtgg	Protospacer
***************************.****

5. spacer 2.5|3030796|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

tgcgtaatgggctacctgaacttcacatatcc	CRISPR spacer
tgcgtagtgggctacctgaacttcacatatcc	Protospacer
******.*************************

6. spacer 2.5|3030796|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

tgcgtaatgggctacctgaacttcacatatcc	CRISPR spacer
tgcgtagtgggctacctgaacttcacatatcc	Protospacer
******.*************************

7. spacer 2.11|3031163|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938

accgataaacaaccgcatagcctctttcgttt	CRISPR spacer
accgataaacaatcgcatggcctctttcgttt	Protospacer
************.*****.*************

8. spacer 1.13|3013673|32|NZ_CP037877|PILER-CR matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggacctatggggccaacatcaccgaacgtag	Protospacer
****** **************.********.*

9. spacer 1.27|3013658|32|NZ_CP037877|CRT,CRISPRCasFinder matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggacctatggggccaacatcaccgaacgtag	Protospacer
****** **************.********.*

10. spacer 1.10|3013493|28|NZ_CP037877|PILER-CR matches to NC_009927 (Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence) position: , mismatch: 5, identity: 0.821

gatcgagtaacgtgcgctggaacgcgtc	CRISPR spacer
gattgaggaacgtgcgctggaacgatta	Protospacer
***.*** ****************  *

11. spacer 1.15|3013795|32|NZ_CP037877|PILER-CR matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.812

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
ccagccagtgccggtagtgcctgatgaaatgg	Protospacer
****  **********************  .

12. spacer 1.29|3013780|32|NZ_CP037877|CRT,CRISPRCasFinder matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.812

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
ccagccagtgccggtagtgcctgatgaaatgg	Protospacer
****  **********************  .

13. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

14. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

15. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

16. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

17. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

18. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

19. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

20. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

21. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

22. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

23. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

24. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

25. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

26. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

27. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

28. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

29. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

30. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

31. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

32. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

33. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

34. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

35. spacer 1.9|3013432|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

36. spacer 1.9|3013432|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

37. spacer 1.9|3013432|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

38. spacer 1.15|3013795|32|NZ_CP037877|PILER-CR matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

39. spacer 1.15|3013795|32|NZ_CP037877|PILER-CR matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

40. spacer 1.15|3013795|32|NZ_CP037877|PILER-CR matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

41. spacer 1.15|3013795|32|NZ_CP037877|PILER-CR matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

42. spacer 1.17|3013917|32|NZ_CP037877|PILER-CR matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ggcagcgggcgaggcaaacacattcggggcgt	CRISPR spacer
gccacggcgcgaggcaaacacattcaggtcgc	Protospacer
* **  * *****************.** **.

43. spacer 1.19|3014039|32|NZ_CP037877|PILER-CR matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  *

44. spacer 1.19|3014039|32|NZ_CP037877|PILER-CR matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  *

45. spacer 1.29|3013780|32|NZ_CP037877|CRT,CRISPRCasFinder matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

46. spacer 1.29|3013780|32|NZ_CP037877|CRT,CRISPRCasFinder matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

47. spacer 1.29|3013780|32|NZ_CP037877|CRT,CRISPRCasFinder matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

48. spacer 1.29|3013780|32|NZ_CP037877|CRT,CRISPRCasFinder matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

49. spacer 1.31|3013902|32|NZ_CP037877|CRT,CRISPRCasFinder matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ggcagcgggcgaggcaaacacattcggggcgt	CRISPR spacer
gccacggcgcgaggcaaacacattcaggtcgc	Protospacer
* **  * *****************.** **.

50. spacer 1.33|3014024|32|NZ_CP037877|CRT,CRISPRCasFinder matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  *

51. spacer 1.33|3014024|32|NZ_CP037877|CRT,CRISPRCasFinder matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  *

52. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030829 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence) position: , mismatch: 7, identity: 0.781

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tacgtcgccttcggcaatgtcgtcaccgaaga	Protospacer
**. ************ ** ********  .*

53. spacer 2.21|3031773|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

54. spacer 2.21|3031773|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ggcggcggtgaaaggatcggcggtgatgccgg	Protospacer
**  .* .**** ********* *********

55. spacer 2.21|3031773|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

56. spacer 1.2|3013005|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

gcgaaatagtggggaaaaacccctggttaacc	CRISPR spacer
tttcaatattggggaaaaacccctcgttacct	Protospacer
 .  **** *************** **** *.

57. spacer 1.8|3013371|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

58. spacer 1.8|3013371|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

59. spacer 1.18|3013978|32|NZ_CP037877|PILER-CR matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggtaatttctcatctaacagcct-----gtacgcctc	CRISPR spacer
ggtaatttcgcatcaaacagccttattagtat-----	Protospacer
********* **** ********     ***.

60. spacer 1.32|3013963|32|NZ_CP037877|CRT,CRISPRCasFinder matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggtaatttctcatctaacagcct-----gtacgcctc	CRISPR spacer
ggtaatttcgcatcaaacagccttattagtat-----	Protospacer
********* **** ********     ***.

61. spacer 2.8|3030979|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

taacgaactgaataaaatgtcagaaagtgacg	CRISPR spacer
ggcagaactgaataaaatgtctgatagtgaat	Protospacer
 .  ***************** ** *****

62. spacer 2.8|3030979|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

taacgaactgaataaaatgtcagaaagtgacg	CRISPR spacer
aaatgaactgaatacaatgtcagacacgcgcg	Protospacer
 **.********** ********* *   .**

63. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tcgaacaccttcgtcacggacgtcaccgtcga	Protospacer
*    *.****** *** ************.*

64. spacer 2.13|3031285|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
cattgcgccttcggcacggacgtccaccagaa	Protospacer
.*** ************ ******  *   **

65. spacer 2.14|3031346|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75

-gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
cagcggatcc-ttgccggtatagaccagcgtat	Protospacer
 . ** .*.* ********************

66. spacer 2.14|3031346|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

67. spacer 2.14|3031346|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

68. spacer 2.14|3031346|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gatccggacgttgccggtattgaacagcgtcc	Protospacer
* . **  ************ ** *******

69. spacer 2.17|3031529|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 8, identity: 0.75

----gctcatgtcaaacgccatcagcgttccggcat	CRISPR spacer
aaaggct----gcaaacgccaatagcgttccggcaa	Protospacer
    ***     ********* .************

70. spacer 2.17|3031529|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 8, identity: 0.75

----gctcatgtcaaacgccatcagcgttccggcat	CRISPR spacer
aaaggct----gcaaacgccaatagcgttccggcaa	Protospacer
    ***     ********* .************

71. spacer 2.18|3031590|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

aatcgccagcctcggaaatattccatcctccg	CRISPR spacer
ggttgccagccccggaagtattccatctccca	Protospacer
..*.*******.*****.*********..**.

72. spacer 1.15|3013795|32|NZ_CP037877|PILER-CR matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 9, identity: 0.719

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcatccagcgccggtagtgccggatgaactca	Protospacer
 **   **.************ *******

73. spacer 1.21|3014161|32|NZ_CP037877|PILER-CR matches to MT162468 (Synechococcus phage S-H25, complete genome) position: , mismatch: 9, identity: 0.719

tcccattcaccaacaacaatatcgccctgcaa----	CRISPR spacer
ccccaatcaccaacaataatatcgt----cagtgtt	Protospacer
.**** **********.*******.    **.

74. spacer 1.29|3013780|32|NZ_CP037877|CRT,CRISPRCasFinder matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 9, identity: 0.719

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcatccagcgccggtagtgccggatgaactca	Protospacer
 **   **.************ *******

75. spacer 1.35|3014146|32|NZ_CP037877|CRT,CRISPRCasFinder matches to MT162468 (Synechococcus phage S-H25, complete genome) position: , mismatch: 9, identity: 0.719

tcccattcaccaacaacaatatcgccctgcaa----	CRISPR spacer
ccccaatcaccaacaataatatcgt----cagtgtt	Protospacer
.**** **********.*******.    **.

76. spacer 2.14|3031346|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

77. spacer 2.14|3031346|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

78. spacer 2.14|3031346|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaattttacgttgccggtgtagaccagtgtca	Protospacer
.   . * **********.********.****

79. spacer 2.19|3031651|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 9, identity: 0.719

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
tcctcctggacaggctgaccgttgacgatctg	Protospacer
     **..**** *********** ******

80. spacer 2.20|3031712|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

accggacaaatcttttttttcctgttcctgtt	CRISPR spacer
gcatcattaatcctttttttcctgttactgta	Protospacer
.*   *. ****.************* ****

81. spacer 2.21|3031773|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagtttgctgaactgctcggcgctgatgccgg	Protospacer
 .*. .  ***** * ****************

82. spacer 2.21|3031773|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cctgacggtgaaccggtcggcgctgatgccgc	Protospacer
    ** .***** *.***************

83. spacer 2.21|3031773|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagggcgtcgaactgatcggcgctcatgccgg	Protospacer
 .* .*  .**** ********** *******

84. spacer 2.22|3031834|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******...

85. spacer 2.22|3031834|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******...

86. spacer 1.1|3012944|32|NZ_CP037877|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

87. spacer 1.1|3012944|32|NZ_CP037877|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

88. spacer 1.13|3013673|32|NZ_CP037877|PILER-CR matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cacctggatgggggccacatcgccgaacgagt	Protospacer
..  . ******* * ************* *

89. spacer 1.21|3014161|32|NZ_CP037877|PILER-CR matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

90. spacer 1.21|3014161|32|NZ_CP037877|PILER-CR matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

91. spacer 1.21|3014161|32|NZ_CP037877|PILER-CR matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

92. spacer 1.21|3014161|32|NZ_CP037877|PILER-CR matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

93. spacer 1.21|3014161|32|NZ_CP037877|PILER-CR matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

94. spacer 1.27|3013658|32|NZ_CP037877|CRT,CRISPRCasFinder matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cacctggatgggggccacatcgccgaacgagt	Protospacer
..  . ******* * ************* *

95. spacer 1.35|3014146|32|NZ_CP037877|CRT,CRISPRCasFinder matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

96. spacer 1.35|3014146|32|NZ_CP037877|CRT,CRISPRCasFinder matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

97. spacer 1.35|3014146|32|NZ_CP037877|CRT,CRISPRCasFinder matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

98. spacer 1.35|3014146|32|NZ_CP037877|CRT,CRISPRCasFinder matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

99. spacer 1.35|3014146|32|NZ_CP037877|CRT,CRISPRCasFinder matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

100. spacer 2.1|3030552|32|NZ_CP037877|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atcttcatattgcgtgacgctgccgatgaacg	CRISPR spacer
tgccggatatggcgtgacgatgccgatgatgt	Protospacer
  *.  **** ******** *********

101. spacer 2.4|3030735|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tgcccgttctgcctcttcgcactctcgatcaa	CRISPR spacer
tgcccgttctgtctcttggcactgccaccttc	Protospacer
***********.***** ***** .*. ..

102. spacer 2.19|3031651|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019257 (Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

103. spacer 2.19|3031651|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019274 (Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

104. spacer 2.19|3031651|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019275 (Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

105. spacer 2.19|3031651|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019279 (Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

106. spacer 2.19|3031651|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

107. spacer 2.19|3031651|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

108. spacer 2.19|3031651|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

109. spacer 2.19|3031651|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

110. spacer 2.24|3031956|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.688

gtggtggcctcaaataaattcgagcgctggag	CRISPR spacer
aaacttgcctcaaataaattcgcgcggtgttc	Protospacer
. . * **************** *** **

111. spacer 2.21|3031773|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

112. spacer 2.21|3031773|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

113. spacer 2.26|3032078|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

114. spacer 2.26|3032078|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

115. spacer 2.26|3032078|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040822 (Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccagaaggttggtctggaaggcgatcgagtcg	Protospacer
.  .**** ************ *****.   .

116. spacer 2.26|3032078|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

117. spacer 2.26|3032078|32|NZ_CP037877|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

976635 : 984252

Planktothrix_phage(16.67%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000125877.1\|976635_978582_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
WP_000447499.1\|978711_978933_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|979256_979577_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934063.1\|979607_981884_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000502119.1\|982075_982534_+\|transposase	IS200/IS605-like element IS200F family transposase	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
WP_085983316.1\|982996_984252_-\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	5.4e-17	33.9

DBSCAN-SWA_2

1034345 : 1133141

100

Salmonella_phage(43.64%)

tRNA,integrase,terminase,holin,tail,portal,protease,lysis

attL 1037254:1037273|attR 1109029:1109048

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001154025.1\|1034345_1035149_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_001288828.1\|1035141_1036464_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_000060025.1\|1036444_1037149_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_000572724.1\|1037148_1041615_+	chromosome partition protein MukB	NA	NA	NA	NA
1037254:1037273	attL	NA	NA	NA	NA
WP_000925872.1\|1041959_1043801_+	L,D-transpeptidase	NA	NA	NA	NA
WP_000357052.1\|1044060_1044609_+	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_001109471.1\|1044636_1045284_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000462653.1\|1045345_1046536_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_000977713.1\|1046720_1047812_-	porin OmpF	Q1MVN1	Enterobacteria_phage	2.2e-99	51.7
WP_000117870.1\|1048418_1049819_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
WP_000762342.1\|1050019_1050481_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000544849.1\|1050797_1052012_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000893207.1\|1052256_1053693_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_000191399.1\|1053770_1054973_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_001262306.1\|1055167_1056460_-\|integrase	site-specific integrase	S4TSP2	Salmonella_phage	1.0e-252	99.8
WP_000065276.1\|1056504_1056753_-	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001237031.1\|1056793_1057033_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_001539618.1\|1057075_1058233_-	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_000017133.1\|1058195_1061081_-	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	97.3
WP_001668146.1\|1061207_1061507_-	hypothetical protein	S4TSN6	Salmonella_phage	8.1e-49	84.5
WP_000917564.1\|1061528_1061687_-	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
WP_014344008.1\|1061679_1061940_-	hypothetical protein	NA	NA	NA	NA
WP_001038966.1\|1061989_1062400_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
WP_000370145.1\|1062519_1062759_+	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
WP_001574095.1\|1062724_1063099_+	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_000062941.1\|1063183_1064167_+	hypothetical protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
WP_000800013.1\|1064169_1064919_+	DNA replication protein DnaC	S4TNF5	Salmonella_phage	1.1e-137	99.2
WP_079832191.1\|1064929_1065277_+	DUF977 family protein	H6WRX9	Salmonella_phage	2.3e-55	95.7
WP_000065108.1\|1065273_1065585_+	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
WP_014343823.1\|1065662_1065953_+	hypothetical protein	NA	NA	NA	NA
WP_001217665.1\|1066244_1066478_+	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
WP_000807548.1\|1066589_1066811_+	hypothetical protein	NA	NA	NA	NA
WP_000929805.1\|1066893_1067496_+	DUF1367 family protein	S4TTI0	Salmonella_phage	8.3e-109	98.5
WP_001096552.1\|1067704_1068316_+	hypothetical protein	A0A0M4RU10	Salmonella_phage	6.9e-79	91.6
WP_001617856.1\|1068312_1068459_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001047631.1\|1068448_1069246_+	antitermination protein	A0A0M4S661	Salmonella_phage	2.3e-151	99.6
WP_010989004.1\|1069312_1069630_+	hypothetical protein	NA	NA	NA	NA
WP_001534733.1\|1069803_1069929_+	hypothetical protein	NA	NA	NA	NA
WP_000798705.1\|1070064_1070514_-	hypothetical protein	NA	NA	NA	NA
WP_076181665.1\|1070874_1071561_-\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	3.9e-131	99.1
WP_001574216.1\|1071836_1072166_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_077949617.1\|1072149_1072602_+	lysozyme	A0A0M4R365	Salmonella_phage	1.1e-78	96.6
WP_001541990.1\|1072619_1073099_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
WP_000371784.1\|1073306_1073840_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
WP_000989241.1\|1073796_1075935_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
WP_000196190.1\|1075931_1076138_+	hypothetical protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
WP_077679777.1\|1076164_1077682_+\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	1.5e-175	65.1
WP_001107908.1\|1079764_1080088_+	DUF2190 family protein	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
WP_000774239.1\|1080080_1080380_+	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
WP_000453194.1\|1080360_1080927_+\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
WP_000196702.1\|1080923_1081325_+\|tail	tail protein	K7PHM6	Enterobacterial_phage	1.5e-42	60.9
WP_000132756.1\|1081336_1082086_+\|tail	tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
WP_000478859.1\|1082131_1082530_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
WP_010989009.1\|1082526_1082856_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
WP_010989010.1\|1082935_1085923_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	8.2e-266	62.1
WP_000978296.1\|1085919_1086252_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	3.3e-35	61.5
WP_000725267.1\|1086350_1086848_+	outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
WP_000877926.1\|1086964_1087498_-	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_001152415.1\|1087587_1088283_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
WP_000606351.1\|1088292_1089030_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
WP_000246065.1\|1088927_1089632_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
WP_000033415.1\|1089703_1093054_+	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	68.6
WP_000178849.1\|1093092_1093335_+	hypothetical protein	NA	NA	NA	NA
WP_080193197.1\|1093388_1095827_+\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	3.7e-91	63.6
WP_000143167.1\|1095826_1096408_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
WP_001526469.1\|1096883_1097852_+	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	7.1e-195	100.0
WP_000334547.1\|1098499_1099126_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_010989011.1\|1099194_1099494_-	hypothetical protein	NA	NA	NA	NA
WP_001525490.1\|1099478_1100165_-	hypothetical protein	NA	NA	NA	NA
WP_000497441.1\|1100435_1100627_-	DinI-like family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
WP_000193784.1\|1101053_1103666_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
WP_000291723.1\|1103873_1104884_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_001220671.1\|1105049_1105592_+	cell division protein ZapC	NA	NA	NA	NA
WP_000224069.1\|1105588_1106698_-	MOSC domain-containing protein	NA	NA	NA	NA
WP_001086485.1\|1106796_1108905_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000053044.1\|1108917_1110825_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
1109029:1109048	attR	NA	NA	NA	NA
WP_000333152.1\|1110839_1112093_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000433414.1\|1112097_1113738_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000759136.1\|1113734_1114298_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_001537784.1\|1114553_1114721_+	ribosome modulation factor	NA	NA	NA	NA
WP_000227928.1\|1114820_1115339_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_000156453.1\|1115407_1117168_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877172.1\|1117353_1117806_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_001674965.1\|1117877_1118930_-	porin OmpA	NA	NA	NA	NA
WP_000288732.1\|1119286_1119796_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_001202375.1\|1120012_1120618_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000950880.1\|1120604_1122758_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261222.1\|1122776_1123223_-	YccF domain-containing protein	NA	NA	NA	NA
WP_000420505.1\|1123346_1125401_+	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
WP_000424187.1\|1125436_1125895_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847719.1\|1125989_1126652_-	DUF2057 family protein	NA	NA	NA	NA
WP_000975203.1\|1126822_1127239_+	CoA-binding protein	NA	NA	NA	NA
WP_000561983.1\|1127283_1127601_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000140480.1\|1127658_1128870_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000859419.1\|1129084_1129633_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000548082.1\|1129658_1130438_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000072884.1\|1130486_1130768_+	acylphosphatase	NA	NA	NA	NA
WP_000904446.1\|1130764_1131094_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000374050.1\|1131180_1131840_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.3e-43	51.9
WP_000938191.1\|1132460_1133141_-\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	8.3e-81	70.6

DBSCAN-SWA_3

1922349 : 1929158

Salmonella_phage(33.33%)

tail,integrase

attL 1917212:1917234|attR 1926927:1926949

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1917212:1917234	attL	NA	NA	NA	NA
WP_000275418.1\|1922349_1923231_-\|tail	tail assembly protein	A0A0M4RTP2	Salmonella_phage	2.2e-65	76.0
WP_001521334.1\|1923703_1923892_+	hypothetical protein	NA	NA	NA	NA
WP_000789530.1\|1923956_1924124_+	lytic enzyme	NA	NA	NA	NA
WP_001050882.1\|1924380_1924914_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.4e-11	48.3
WP_001013467.1\|1924967_1925198_-	hypothetical protein	Q8HA86	Salmonella_phage	6.1e-28	93.7
WP_010989030.1\|1925387_1925882_+	hypothetical protein	A0A0U2I1R6	Escherichia_phage	8.2e-22	68.9
WP_001520095.1\|1925941_1926796_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.6e-73	50.9
WP_000722368.1\|1927169_1927523_-	YebY family protein	NA	NA	NA	NA
1926927:1926949	attR	NA	NA	NA	NA
WP_000979702.1\|1927539_1928415_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000168393.1\|1928415_1928790_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000856224.1\|1928927_1929158_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3

DBSCAN-SWA_4

2004608 : 2083952

103

Salmonella_phage(85.07%)

transposase,terminase,integrase,head,holin,capsid,tail,plate,portal,protease,lysis

attL 2011146:2011161|attR 2085575:2085590

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000502119.1\|2004608_2005067_-\|transposase	IS200/IS605-like element IS200F family transposase	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
WP_000659236.1\|2005247_2006453_-	lysine-N-methylase	NA	NA	NA	NA
WP_000079805.1\|2006531_2008019_-	FliC/FljB family flagellin	NA	NA	NA	NA
WP_000146802.1\|2008275_2009679_+	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_000287764.1\|2009693_2010101_+	flagellar export chaperone FliS	NA	NA	NA	NA
WP_000204899.1\|2010100_2010469_+	flagella biosynthesis regulatory protein FliT	NA	NA	NA	NA
WP_000795487.1\|2010540_2012025_+	alpha-amylase	NA	NA	NA	NA
2011146:2011161	attL	NA	NA	NA	NA
WP_000754695.1\|2012064_2012490_-	lipoprotein	NA	NA	NA	NA
WP_001535233.1\|2012675_2013881_+	selenium metabolism membrane protein YedE/FdhT	NA	NA	NA	NA
WP_000790504.1\|2013877_2014111_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA
WP_000639596.1\|2014375_2014762_+	hypothetical protein	NA	NA	NA	NA
WP_000719036.1\|2014881_2015196_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
WP_001276834.1\|2015412_2017095_+	flagellar basal body M-ring protein FliF	NA	NA	NA	NA
WP_000067735.1\|2017087_2018083_+	flagellar motor switch protein FliG	NA	NA	NA	NA
WP_000064163.1\|2018075_2018783_+	flagellar assembly protein FliH	NA	NA	NA	NA
WP_000213257.1\|2018782_2020153_+	flagellum-specific ATP synthase FliI	NA	NA	NA	NA
WP_000046981.1\|2020174_2020618_+	flagella biosynthesis chaperone FliJ	NA	NA	NA	NA
WP_000631669.1\|2020614_2021832_+	flagellar hook length control protein FliK	NA	NA	NA	NA
WP_000132169.1\|2021936_2022404_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_000502811.1\|2022408_2023413_+	flagellar motor switch protein FliM	NA	NA	NA	NA
WP_001282115.1\|2023409_2023823_+	flagellar motor switch protein FliN	NA	NA	NA	NA
WP_000978276.1\|2023822_2024200_+	flagellar type III secretion system protein FliO	NA	NA	NA	NA
WP_001253410.1\|2024199_2024937_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA
WP_000187355.1\|2024946_2025216_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA
WP_000616953.1\|2025224_2026019_+	flagellar type III secretion system protein FliR	NA	NA	NA	NA
WP_000103974.1\|2026300_2026924_+	transcriptional regulator RcsA	NA	NA	NA	NA
WP_071524019.1\|2026962_2027211_-	protein DsrB	NA	NA	NA	NA
WP_000844798.1\|2027285_2027513_+	YodD family peroxide/acid resistance protein	NA	NA	NA	NA
WP_000948794.1\|2027822_2028638_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA
WP_001119821.1\|2028616_2030329_-	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	1.2e-19	37.4
WP_001178599.1\|2030493_2030739_-	YodC family protein	NA	NA	NA	NA
WP_000929134.1\|2030755_2031667_-	DUF808 domain-containing protein	NA	NA	NA	NA
WP_001212264.1\|2031842_2032763_+	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_000785978.1\|2032751_2033222_-	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	1.2e-30	46.9
WP_001157322.1\|2033202_2034633_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
WP_000377041.1\|2034706_2035402_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_000107430.1\|2035493_2035793_-	membrane protein	NA	NA	NA	NA
WP_001080680.1\|2036442_2037639_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.8e-110	56.1
WP_024131109.1\|2037899_2038088_-	hypothetical protein	NA	NA	NA	NA
WP_000208509.1\|2038098_2038311_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_000457662.1\|2038765_2040034_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	4.2e-227	92.2
WP_000394196.1\|2040036_2040456_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000500831.1\|2040582_2040744_-	hypothetical protein	NA	NA	NA	NA
WP_001526483.1\|2041374_2041596_-	helix-turn-helix domain-containing protein	Q8HAB1	Salmonella_phage	1.2e-36	100.0
WP_000492926.1\|2041808_2042816_+	type III secretion system effector arginine glycosyltransferase	Q8HAB2	Salmonella_phage	7.9e-197	100.0
WP_000760554.1\|2043100_2043670_-\|tail	tail fiber assembly protein	Q8HAB3	Salmonella_phage	7.3e-107	100.0
WP_000554737.1\|2043669_2045232_-	hypothetical protein	Q8HAB4	Salmonella_phage	2.6e-287	100.0
WP_001207832.1\|2045218_2045806_-	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
WP_014343855.1\|2045808_2046330_-\|plate	baseplate J/gp47 family protein	Q8HAB6	Salmonella_phage	2.9e-94	100.0
WP_014343856.1\|2046364_2046910_-	phage protein	Q8HAB7	Salmonella_phage	9.2e-99	100.0
WP_000605050.1\|2046881_2047295_-	hypothetical protein	Q8HAB8	Salmonella_phage	1.1e-75	100.0
WP_001273649.1\|2047299_2047833_-\|plate	phage baseplate assembly protein	Q8HAB9	Salmonella_phage	1.4e-96	100.0
WP_001066635.1\|2047832_2048891_-	hypothetical protein	Q8HAC0	Salmonella_phage	6.6e-202	99.7
WP_000863818.1\|2048887_2050228_-	DNA circularization protein	A0A192Y5U9	Salmonella_phage	5.7e-251	99.6
WP_000785385.1\|2050261_2052190_-\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	0.0e+00	99.8
WP_000588852.1\|2052274_2052601_-\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
WP_000515952.1\|2052597_2052954_-\|tail	tail protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
WP_001007991.1\|2052953_2054450_-\|tail	tail sheath protein	Q8HAC5	Salmonella_phage	2.7e-278	100.0
WP_000497739.1\|2054439_2054604_-	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	1.0e-24	100.0
WP_000779218.1\|2054607_2055168_-	hypothetical protein	Q8HAC7	Salmonella_phage	3.0e-105	100.0
WP_001135697.1\|2055164_2055677_-	hypothetical protein	Q8HAC8	Salmonella_phage	4.6e-92	100.0
WP_000702408.1\|2055648_2056053_-\|head	phage head closure protein	Q8HAC9	Salmonella_phage	1.4e-72	100.0
WP_000927378.1\|2056049_2056373_-\|head,tail	phage gp6-like head-tail connector protein	A0A192Y8J4	Salmonella_phage	6.3e-55	100.0
WP_000601353.1\|2056375_2056576_-	hypothetical protein	Q8HAD1	Salmonella_phage	1.4e-28	100.0
WP_000257528.1\|2056626_2057832_-\|capsid	phage major capsid protein	Q8HAD2	Salmonella_phage	1.6e-223	100.0
WP_001193639.1\|2057846_2058497_-\|head,protease	HK97 family phage prohead protease	Q8HAD3	Salmonella_phage	1.5e-119	100.0
WP_000466254.1\|2058474_2059716_-\|portal	phage portal protein	Q8HAD4	Salmonella_phage	2.0e-242	99.8
WP_000605609.1\|2059715_2059898_-	hypothetical protein	Q8HAD5	Salmonella_phage	1.0e-25	100.0
WP_000088182.1\|2059909_2061643_-\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	0.0e+00	100.0
WP_000929191.1\|2061639_2062134_-\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	4.6e-89	100.0
WP_001135225.1\|2062259_2062610_-	HNH endonuclease	Q8HA82	Salmonella_phage	2.5e-65	100.0
WP_001292890.1\|2062670_2062973_-	hypothetical protein	Q8HA83	Salmonella_phage	3.6e-52	100.0
WP_000877027.1\|2063192_2063612_-	KilA-N domain-containing protein	Q8HA84	Salmonella_phage	4.8e-71	100.0
WP_001050825.1\|2063824_2064310_-\|lysis	lysis protein	Q8HA85	Salmonella_phage	5.9e-81	100.0
WP_001005901.1\|2064306_2064921_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	9.3e-116	100.0
WP_001527046.1\|2064923_2065268_-\|holin	phage holin, lambda family	Q8HA87	Salmonella_phage	5.3e-44	100.0
WP_014343859.1\|2065429_2065864_+	hypothetical protein	NA	NA	NA	NA
WP_001527054.1\|2065793_2066051_-	hypothetical protein	Q8HA88	Salmonella_phage	5.2e-44	100.0
WP_000188927.1\|2066183_2066807_-	hypothetical protein	Q8HA89	Salmonella_phage	9.1e-119	100.0
WP_065314711.1\|2066817_2067807_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	1.0e-188	97.0
WP_001061457.1\|2067814_2068675_-	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	2.9e-163	100.0
WP_001241579.1\|2068691_2069081_-	RusA family crossover junction endodeoxyribonuclease	Q8HA93	Salmonella_phage	3.7e-70	100.0
WP_000066908.1\|2069077_2069971_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	7.6e-175	100.0
WP_001684745.1\|2069970_2070453_-	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	1.1e-87	100.0
WP_000061500.1\|2070454_2071273_-	helix-turn-helix domain-containing protein	Q8HA96	Salmonella_phage	2.8e-136	100.0
WP_000620702.1\|2071269_2071494_-	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
WP_001087402.1\|2071490_2072648_-	peptidase	Q8HA97	Salmonella_phage	4.2e-218	100.0
WP_000509731.1\|2072644_2073199_-	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
WP_001191666.1\|2073227_2073452_-	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
WP_001020636.1\|2073549_2074245_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.2e-128	100.0
WP_000997190.1\|2075059_2075431_+	hypothetical protein	Q8HAA1	Salmonella_phage	1.1e-63	100.0
WP_000080415.1\|2075488_2076316_+	YfdQ family protein	Q8HAA2	Salmonella_phage	7.5e-153	100.0
WP_000008351.1\|2076452_2076992_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
WP_000764235.1\|2077062_2077293_+	hypothetical protein	Q8HAA4	Salmonella_phage	2.0e-34	100.0
WP_000071070.1\|2077289_2077805_+	DUF262 domain-containing protein	Q8HAA5	Salmonella_phage	7.4e-98	100.0
WP_000065095.1\|2077801_2078419_+	ead/Ea22-like family protein	Q8HAA6	Salmonella_phage	2.6e-113	100.0
WP_000208068.1\|2078415_2079249_+	hypothetical protein	Q8HAA7	Salmonella_phage	4.7e-163	100.0
WP_001061334.1\|2079252_2079822_+	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	7.1e-110	100.0
WP_000414876.1\|2079846_2080089_+	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	9.5e-40	100.0
WP_000532847.1\|2080090_2081080_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
WP_000598920.1\|2081371_2082169_+	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_001738920.1\|2082540_2082831_+	DUF4102 domain-containing protein	H2BDA3	Pseudomonas_phage	3.0e-08	49.1
WP_001219015.1\|2083478_2083952_+	peptidase	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	7.1e-39	77.6
2085575:2085590	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2169946 : 2180452

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000126349.1\|2169946_2171260_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
WP_000565905.1\|2171286_2172366_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
WP_000648784.1\|2172370_2173144_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000018226.1\|2173140_2174133_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973708.1\|2174138_2174690_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
WP_000857529.1\|2174690_2175569_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.3e-109	65.5
WP_001023662.1\|2175616_2176516_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
WP_000697840.1\|2176515_2177601_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
WP_000981469.1\|2177977_2178871_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_001111841.1\|2179048_2180452_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	27.1

DBSCAN-SWA_6

2248759 : 2257930

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195332.1\|2248759_2250793_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
WP_000703137.1\|2251033_2251492_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_001197952.1\|2251663_2252194_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|2252250_2252718_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598637.1\|2252764_2253484_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272845.1\|2253480_2255166_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
WP_001240418.1\|2255388_2256120_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|2256179_2256287_+	protein YohO	NA	NA	NA	NA
WP_000824855.1\|2256267_2256999_-	ABC transporter permease	NA	NA	NA	NA
WP_000569166.1\|2256982_2257930_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8

DBSCAN-SWA_7

2277337 : 2343732

Salmonella_phage(28.57%)

tail,holin,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000989296.1\|2277337_2278033_+\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_000553526.1\|2278186_2279071_+	cytidine deaminase	NA	NA	NA	NA
WP_000920081.1\|2279247_2279967_+	outer membrane permeability protein SanA	NA	NA	NA	NA
WP_000605187.1\|2279963_2280209_+	DUF2542 family protein	NA	NA	NA	NA
WP_001136409.1\|2280413_2281655_+	NAD-dependent dihydropyrimidine dehydrogenase subunit PreT	NA	NA	NA	NA
WP_000956095.1\|2281648_2282884_+	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA	NA	NA	NA
WP_001275101.1\|2282958_2283969_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA
WP_000535907.1\|2283984_2285505_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	1.0e-09	31.9
WP_001036943.1\|2285638_2286637_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA
WP_000628631.1\|2287135_2288158_-	HTH-type transcriptional regulator GalS	NA	NA	NA	NA
WP_001526153.1\|2288307_2289450_-	DUF418 family protein	NA	NA	NA	NA
WP_001139611.1\|2289464_2290133_-	GTP cyclohydrolase I FolE	M1Q6X8	Cellulophaga_phage	4.1e-56	56.3
WP_000425488.1\|2290462_2291320_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_000876817.1\|2291308_2291698_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000443208.1\|2291702_2293070_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_000022915.1\|2293286_2294174_+	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_000023807.1\|2294206_2295529_+	MFS transporter	NA	NA	NA	NA
WP_000488255.1\|2295572_2297564_-	catecholate siderophore receptor CirA	A0A0P0I887	Acinetobacter_phage	6.7e-14	37.9
WP_000535000.1\|2297908_2299378_-	lysine-specific permease	NA	NA	NA	NA
WP_000548308.1\|2299567_2300431_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000137961.1\|2300551_2301601_+	YeiH family protein	NA	NA	NA	NA
WP_000873909.1\|2301679_2302537_+	deoxyribonuclease IV	A0A1V0SBL9	Catovirus	2.2e-22	28.5
WP_000854414.1\|2302601_2304290_-	PTS fructose transporter subunit IIBC	NA	NA	NA	NA
WP_000091249.1\|2304306_2305245_-	1-phosphofructokinase	NA	NA	NA	NA
WP_000487287.1\|2305244_2306375_-	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA
WP_000551937.1\|2306743_2307925_+	sugar efflux transporter SetB	NA	NA	NA	NA
WP_001213882.1\|2307989_2308655_-	membrane protein	NA	NA	NA	NA
WP_001519564.1\|2308656_2308779_-	membrane protein	NA	NA	NA	NA
WP_010989043.1\|2309166_2309421_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001136822.1\|2309744_2310317_+	elongation factor P-like protein YeiP	NA	NA	NA	NA
WP_000169350.1\|2310529_2311516_+	GTP-binding protein	NA	NA	NA	NA
WP_000178095.1\|2311545_2312265_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_000241015.1\|2312678_2313251_+	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	A0A1V0DZX6	Clostridioides_phage	8.1e-13	38.9
WP_000957746.1\|2313576_2315133_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA
WP_000561748.1\|2315239_2317045_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000501623.1\|2317054_2318149_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_001137764.1\|2318148_2319174_+	ABC transporter permease	NA	NA	NA	NA
WP_000203622.1\|2319175_2320765_+	microcin C ABC transporter ATP-binding protein YejF	G9BWD6	Planktothrix_phage	8.5e-20	32.5
WP_001094639.1\|2320768_2321113_-	hypothetical protein	NA	NA	NA	NA
WP_000213347.1\|2321503_2322694_-	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	2.4e-19	22.2
WP_001234836.1\|2322721_2323417_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA
WP_000578121.1\|2323568_2325329_+	DEAD/DEAH box helicase	M4Q3N1	Vibrio_phage	1.9e-100	41.6
WP_000494192.1\|2325453_2325738_+	50S ribosomal protein L25	NA	NA	NA	NA
WP_000033440.1\|2325846_2326467_-	hypothetical protein	NA	NA	NA	NA
WP_000050806.1\|2326494_2327502_-	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	4.5e-83	48.3
WP_001135904.1\|2327681_2327909_+	YejL family protein	NA	NA	NA	NA
WP_000256150.1\|2327940_2329701_+	cardiolipin transport protein PbgA	NA	NA	NA	NA
WP_000806401.1\|2329981_2330485_-	LexA family transcriptional regulator	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3
WP_020843597.1\|2330512_2330803_+	DinI family protein	S4TND2	Salmonella_phage	4.7e-25	83.3
WP_000639473.1\|2331150_2332980_+	acyltransferase	C6ZR20	Salmonella_phage	3.0e-61	29.6
WP_000022213.1\|2333033_2333477_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
WP_001215679.1\|2333854_2334382_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
WP_000554739.1\|2334384_2335626_-	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
WP_001120499.1\|2336218_2336548_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.9e-36	94.6
WP_001526364.1\|2336844_2338176_+	AAA family ATPase	R9TRQ8	Vibrio_phage	2.1e-19	28.5
WP_010989045.1\|2338204_2338573_-	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
WP_116024798.1\|2338587_2339577_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	1.3e-188	96.7
WP_001115840.1\|2339905_2342272_-	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	Q9MBL9	Phage_Gifsy-2	2.9e-72	88.7
WP_001113462.1\|2342440_2342644_-\|tail	tail protein	NA	NA	NA	NA
WP_000624225.1\|2342940_2343732_-\|tail	tail protein	Q1MVL8	Enterobacteria_phage	1.7e-48	31.6

DBSCAN-SWA_8

2682615 : 2789785

112

Salmonella_phage(40.62%)

transposase,tRNA,terminase,integrase,head,holin,capsid,tail,portal,protease,lysis

attL 2707160:2707176|attR 2797689:2797705

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000940032.1\|2682615_2683347_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_000553467.1\|2683465_2684269_+	inositol-1-monophosphatase	NA	NA	NA	NA
WP_000174944.1\|2684413_2685292_+	alpha/beta hydrolase	A0A1C9C5K3	Heterosigma_akashiwo_virus	3.5e-15	24.7
WP_000985204.1\|2685473_2686517_+	anaerobic sulfite reductase subunit A	NA	NA	NA	NA
WP_000017587.1\|2686520_2687339_+	anaerobic sulfite reductase subunit B	NA	NA	NA	NA
WP_000020685.1\|2687349_2688363_+	sulfite reductase subunit C	NA	NA	NA	NA
WP_000111027.1\|2688363_2689350_-	nickel/cobalt transporter	NA	NA	NA	NA
WP_000805728.1\|2689340_2689979_-	DUF1007 family protein	NA	NA	NA	NA
WP_000982961.1\|2690104_2691382_+	stationary phase inducible protein CsiE	NA	NA	NA	NA
WP_001173729.1\|2691376_2692516_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_000919178.1\|2692711_2693965_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.3e-100	53.0
WP_000883146.1\|2694289_2695480_+	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_001187150.1\|2695661_2697206_+	CadC family transcriptional regulator	NA	NA	NA	NA
WP_136571518.1\|2697566_2698898_+	cadaverine/lysine antiporter	NA	NA	NA	NA
WP_001100652.1\|2698980_2701125_+	lysine decarboxylase CadA	NA	NA	NA	NA
WP_000856793.1\|2701180_2702641_+	MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.7e-46	28.8
WP_000717694.1\|2702689_2703028_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
WP_000625591.1\|2703104_2704442_-	two-component system response regulator GlrR	W8CYM9	Bacillus_phage	1.8e-10	29.2
WP_001054236.1\|2704438_2705203_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
WP_001670672.1\|2705204_2706635_-	two component system sensor histidine kinase QseE/GlrK	W8CYF6	Bacillus_phage	2.0e-15	26.1
2707160:2707176	attL	NA	NA	NA	NA
WP_000970045.1\|2707284_2711172_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	1.4e-127	57.6
WP_001747289.1\|2711193_2711427_+	hypothetical protein	NA	NA	NA	NA
WP_000734248.1\|2711427_2712972_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA
WP_001134566.1\|2713022_2713574_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_000253558.1\|2713598_2714234_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_000361663.1\|2714237_2715599_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_001048530.1\|2715609_2716503_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_000995703.1\|2716618_2717467_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_000684022.1\|2717505_2718423_-	oxidoreductase	NA	NA	NA	NA
WP_001276370.1\|2718444_2719641_-	OFA family MFS transporter	NA	NA	NA	NA
WP_001022463.1\|2719756_2720683_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	3.0e-09	24.4
WP_001196290.1\|2720720_2720981_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.4e-17	52.3
WP_000986043.1\|2721092_2721473_-	holo-ACP synthase	NA	NA	NA	NA
WP_000818972.1\|2721472_2722204_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_000399380.1\|2722215_2722944_-	DNA repair protein RecO	NA	NA	NA	NA
WP_000102232.1\|2722955_2723861_-	GTPase Era	NA	NA	NA	NA
WP_001068341.1\|2723857_2724538_-	ribonuclease III	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
WP_000002559.1\|2724811_2725786_-	signal peptidase I	NA	NA	NA	NA
WP_000790154.1\|2725802_2727602_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
WP_010989047.1\|2728006_2729500_+	type III secretion effector GogB	Q9MBM1	Phage_Gifsy-1	3.4e-260	100.0
WP_001542312.1\|2729954_2730092_+	hypothetical protein	NA	NA	NA	NA
WP_015589559.1\|2730804_2730969_-\|transposase	transposase	NA	NA	NA	NA
WP_015701342.1\|2731548_2731614_-	DUF4113 domain-containing protein	NA	NA	NA	NA
WP_001738443.1\|2731676_2731889_-	helix-turn-helix domain-containing protein	S4TTF2	Salmonella_phage	3.8e-08	90.6
WP_010989049.1\|2731995_2732223_+	PagK-like protein	NA	NA	NA	NA
WP_000143154.1\|2732319_2732898_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9
WP_000593433.1\|2732887_2733712_-\|tail	tail protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
WP_001144691.1\|2733708_2736081_-\|tail	tail protein	A0A0K2FIZ6	Escherichia_phage	1.1e-90	65.6
WP_000178853.1\|2736134_2736377_-	hypothetical protein	NA	NA	NA	NA
WP_001526393.1\|2736415_2739778_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.6
WP_000246126.1\|2739839_2740487_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
WP_000662739.1\|2740384_2741122_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
WP_001152689.1\|2741128_2741827_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
WP_000447369.1\|2741836_2742166_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
WP_000372072.1\|2742168_2745264_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.1e-280	62.3
WP_010989052.1\|2745235_2745574_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
WP_000479607.1\|2745570_2745966_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_000971954.1\|2746016_2746763_-\|tail	tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
WP_000033885.1\|2746770_2747172_-\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
WP_000817263.1\|2747280_2748411_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q9G0F2	Phage_Gifsy-1	9.2e-218	100.0
WP_000677089.1\|2748459_2749038_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_000083294.1\|2749065_2749449_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
WP_000201486.1\|2749459_2749819_-	DNA packaging protein	NA	NA	NA	NA
WP_000522566.1\|2749876_2750905_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
WP_000011260.1\|2750959_2751307_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
WP_001189503.1\|2751319_2752816_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
WP_000831821.1\|2752805_2754386_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
WP_000201415.1\|2754382_2754586_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
WP_000623091.1\|2754569_2756501_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
WP_001102153.1\|2756472_2757018_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
WP_000669690.1\|2757304_2757706_+	hypothetical protein	NA	NA	NA	NA
WP_001533543.1\|2757941_2758394_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
WP_000984581.1\|2758411_2758864_-	lysozyme	A0A0M4R365	Salmonella_phage	5.1e-79	97.3
WP_001574216.1\|2758847_2759177_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_001110783.1\|2759452_2760139_+\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	9.4e-133	100.0
WP_000657897.1\|2760353_2760542_-	hypothetical protein	NA	NA	NA	NA
WP_000211410.1\|2761048_2761612_-	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
WP_001097241.1\|2761884_2762562_-	antitermination protein	I6PDF8	Cronobacter_phage	7.7e-63	54.0
WP_000801757.1\|2762558_2762699_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
WP_001096550.1\|2762695_2763307_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
WP_000929791.1\|2763515_2764118_-	DUF1367 family protein	S4TTI0	Salmonella_phage	2.8e-109	99.0
WP_014343878.1\|2764152_2764401_-	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
WP_001217669.1\|2764517_2764751_-	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
WP_000704096.1\|2765020_2766013_+	peptidase M85	NA	NA	NA	NA
WP_000065102.1\|2766039_2766558_-	ead/Ea22-like family protein	S4TNP2	Salmonella_phage	1.4e-40	89.8
WP_000113618.1\|2766554_2766902_-	DUF977 family protein	H6WRX9	Salmonella_phage	2.7e-56	96.5
WP_000800012.1\|2766912_2767662_-	DNA replication protein DnaC	S4TNF5	Salmonella_phage	4.3e-139	100.0
WP_157355909.1\|2767664_2768753_-	hypothetical protein	H6WRX7	Salmonella_phage	1.4e-154	88.5
WP_010835408.1\|2768837_2769212_-	hypothetical protein	S4TTD7	Salmonella_phage	1.9e-63	98.4
WP_001274939.1\|2769171_2769414_-	hypothetical protein	A0A0M4QX15	Salmonella_phage	5.6e-24	67.9
WP_014344514.1\|2769486_2769900_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	1.5e-45	78.0
WP_000106861.1\|2770042_2771152_+	AAA family ATPase	E7C9Q8	Salmonella_phage	1.6e-118	58.4
WP_000917561.1\|2771632_2771791_+	hypothetical protein	H6WRX3	Salmonella_phage	2.6e-22	96.2
WP_014344515.1\|2771812_2772163_+	hypothetical protein	S4TSN6	Salmonella_phage	2.7e-59	94.0
WP_000017130.1\|2772289_2775217_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	0.0e+00	95.7
WP_077905217.1\|2775179_2776337_+	recombinase RecT	S4TTE8	Salmonella_phage	1.8e-216	99.5
WP_001237032.1\|2776379_2776619_+	DUF4060 family protein	H6WRW9	Salmonella_phage	2.2e-36	97.5
WP_014344516.1\|2776659_2776944_+	excisionase Xis	H6WRW8	Salmonella_phage	1.1e-42	87.2
WP_001007935.1\|2776921_2778151_-\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	6.4e-233	94.1
WP_000589087.1\|2778648_2779128_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_000812017.1\|2779124_2780081_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_001168374.1\|2780080_2780731_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_000003307.1\|2780762_2781338_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_014344135.1\|2781334_2781499_-	rpoE leader peptide RseD	NA	NA	NA	NA
WP_000989177.1\|2781762_2783385_+	L-aspartate oxidase	NA	NA	NA	NA
WP_000083343.1\|2783369_2784107_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219174.1\|2784237_2785572_+	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
WP_001526875.1\|2785589_2786489_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000188414.1\|2786591_2787179_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000627811.1\|2787240_2787624_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
WP_000179978.1\|2787942_2788632_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
WP_000997368.1\|2788747_2789785_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
2797689:2797705	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4347478 : 4367898

Burkholderia_phage(45.0%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000587738.1\|4347478_4348207_-	hypothetical protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3
WP_010989092.1\|4348403_4348694_-	membrane protein	NA	NA	NA	NA
WP_000084331.1\|4348942_4349398_-	hypothetical protein	NA	NA	NA	NA
WP_001526208.1\|4349394_4350000_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_000368196.1\|4350004_4351750_-\|tail	tail protein	A0A0M3ULF6	Salmonella_phage	3.2e-52	52.2
WP_000359500.1\|4351752_4352385_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
WP_000951736.1\|4352377_4353493_-\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
WP_001093501.1\|4353483_4353843_-\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_001095011.1\|4354006_4355554_-	membrane protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
WP_000703632.1\|4355553_4356483_-	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	8.8e-150	83.8
WP_000593182.1\|4356479_4356842_-	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_000679398.1\|4357169_4357892_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
WP_000818154.1\|4357901_4358945_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
WP_001269716.1\|4358932_4359142_-	membrane protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_000271423.1\|4359141_4360095_-	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
WP_001262500.1\|4360094_4362449_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	6.9e-66	30.6
WP_001185654.1\|4362545_4362674_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_001003642.1\|4362633_4362951_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000907494.1\|4363002_4363527_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_000729852.1\|4363526_4364954_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
WP_000875314.1\|4364943_4365141_-	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000449433.1\|4365137_4365593_-	hypothetical protein	NA	NA	NA	NA
WP_000777266.1\|4365752_4366067_-	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_001270440.1\|4366079_4366685_-	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	1.2e-59	59.4
WP_001226442.1\|4366687_4366975_-	membrane protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
WP_000615248.1\|4367550_4367898_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP037876

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 2605

Xanthomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000983042.1\|679_835_-	hypothetical protein	NA	NA	NA	NA
WP_000477658.1\|847_1132_-	hypothetical protein	NA	NA	NA	NA
WP_000139307.1\|1246_1810_-	fertility inhibition protein FinO	NA	NA	NA	NA
WP_000177629.1\|1864_2605_-	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	3.9e-07	30.8

DBSCAN-SWA_2

20457 : 20877

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001229397.1\|20457_20877_-	HNH endonuclease	C6ZR29	Salmonella_phage	2.2e-68	88.9

DBSCAN-SWA_3

27346 : 27568

Vibrio_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001278699.1\|27346_27568_-	conjugal transfer protein TraR	A2I309	Vibrio_virus	1.0e-08	42.3

DBSCAN-SWA_4

37801 : 41713

Emiliania_huxleyi_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000117513.1\|37801_39799_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	5.5e-16	30.0
WP_000131520.1\|39867_40110_-	DUF905 domain-containing protein	NA	NA	NA	NA
WP_000741240.1\|40164_40683_-	single-stranded DNA-binding protein SSB2	A0A0A0P1Q9	Enterobacteria_phage	6.8e-51	82.5
WP_156036612.1\|41276_41426_-	hypothetical protein	NA	NA	NA	NA
WP_000015983.1\|41389_41713_-	hypothetical protein	G8C7V1	Escherichia_phage	2.0e-13	56.5

DBSCAN-SWA_5

44905 : 54201

Escherichia_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000088645.1\|44905_45586_-	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-28	36.4
WP_000369839.1\|45967_46324_-	hypothetical protein	NA	NA	NA	NA
WP_000490265.1\|46316_46787_-	hypothetical protein	NA	NA	NA	NA
WP_000925627.1\|47297_47720_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.0e-28	51.6
WP_000457541.1\|47719_48994_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	3.0e-156	64.5
WP_001541561.1\|49075_50053_-	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	5.2e-84	53.2
WP_000427676.1\|50049_51255_-	ParA family protein	A0A077SL49	Escherichia_phage	1.5e-162	69.3
WP_000728917.1\|51669_52611_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	2.0e-72	54.3
WP_001541562.1\|52642_53209_-	DUF2913 family protein	NA	NA	NA	NA
WP_001527010.1\|53265_53601_-	hypothetical protein	NA	NA	NA	NA
WP_001541564.1\|53784_54201_-	hypothetical protein	O64348	Escherichia_phage	8.2e-07	42.9

DBSCAN-SWA_6

57750 : 58311

Ralstonia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001240331.1\|57750_58311_+	recombinase family protein	A0A1W5LU24	Ralstonia_phage	1.3e-31	42.7

DBSCAN-SWA_7

63818 : 63983

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001576629.1\|63818_63983_+	glycoside hydrolase family protein	A0A0M4R365	Salmonella_phage	3.3e-12	63.0

DBSCAN-SWA_8

69405 : 69756

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001541541.1\|69405_69756_+	helix-turn-helix domain-containing protein	A0A077SLN2	Escherichia_phage	1.9e-44	80.5

DBSCAN-SWA_9

72816 : 73599

Macacine_betaherpesvirus(100.0%)

integrase

attL 65575:65587|attR 80504:80516

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
65575:65587	attL	NA	NA	NA	NA
WP_000082169.1\|72816_73599_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.6e-51	91.1
WP_000082169.1\|72816_73599_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.6e-51	91.1
80504:80516	attR	NA	NA	NA	NA

DBSCAN-SWA_10

77439 : 78429

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001527061.1\|77439_78429_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.2e-101	59.6

DBSCAN-SWA_11

89515 : 90073

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000725062.1\|89515_90073_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	4.5e-24	38.5

DBSCAN-SWA_12

93962 : 94987

Stx2-converting_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001339397.1\|93962_94640_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_000624622.1\|94639_94987_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP037875

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP037877

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP037876

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection