CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP044298	Escherichia coli strain P59A chromosome, complete genome	8 crisprs	cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,csa3,PD-DExK	13	3
NZ_CP044302	Escherichia coli strain P59A plasmid pP59A-4, complete sequence	0 crisprs	NA	0	0
NZ_CP044300	Escherichia coli strain P59A plasmid pP59A-2, complete sequence	0 crisprs	DEDDh	0	4
NZ_CP044304	Escherichia coli strain P59A plasmid pP59A-6, complete sequence	0 crisprs	NA	0	0
NZ_CP044299	Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence	1 crisprs	NA	2	16
NZ_CP044303	Escherichia coli strain P59A plasmid pP59A-5, complete sequence	0 crisprs	NA	0	0
NZ_CP044301	Escherichia coli strain P59A plasmid pP59A-3, complete sequence	0 crisprs	NA	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044298_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044298_1

456315-457199

TypeI-E

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

14 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas3

The CRISPR arrays of NZ_CP044298_1

>merge|NZ_CP044298|1|456315-457199|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGCTTTCGCAGACGCGCGGCGATACGCTCACGCAGAGTTCCCCGCGCCAGCGGGGATAAACCGCAGCCGAAGCCAAAGGTGATGCCGAACACGCTGAGTTCCCCGCGCCAGCGGGGATAAACCGGGCTCCCTGTCGGTTGTAATTGATAATGTTGAGAGTTCCCCGCGCCAGCGGGGATAAACCGTTTGGATCGGGTCTGGAATTTCTGAGCGGTCGCGAGTTCCCCGCGCCAGCGGGGATAAACCGCGAATCGCGCATACCCTGCGCGTCGCCGCCTGCGAGTTCCCCGCGCCAGCGGGGATAAACCGTCAGCTTTATAAATCCGGAGATACGGAAACTAGAGTTCCCCGCGCCAGCGGGGATAAACCGGACTCACCCCGAAAGAGATTGCCAGCCAGCTTGAGTTCCCCGCGCCAGCGGGGATAAACCGCTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCAGAGTTCCCCGCGCCAGCGGGGATAAACCGCCCACCAGCGCGTTTTTTGCCGGGGCCATAGTGAGTTCCCCGCGCCAGCGGGGATAAACCGTTGAACTCACCACGATTGTTAATATGGACGATGAGTTCCCCGCGCCAGCGGGGATAAACCGGGGGGCGCATGACCGTAAACATTATCCCCCGGGAGTTCCCCGCGCCAGCGGGGATAAACCGGGAGTTCAGACATAGGTGGAATGATGGACTACGAGTTCCCCGCGTTAGCGGGGATAAACCGCCCGGTAGCCAGGTTTGCAACGCCTGAACCGAGAGTTCCCCGCGCCAGCAGGGATAAACCGGCAACGACGGTGAGATTTCACGCCTGACGCTGGTGTTCCCCGCATCAGCGGGGATAAACCG

>NZ_CP044298|1|1|456315-456955|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCGCAGACGCGCGGCGATACGCTCACGCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCCGAAGCCAAAGGTGATGCCGAACACGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTCCCTGTCGGTTGTAATTGATAATGTTGA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGATCGGGTCTGGAATTTCTGAGCGGTCGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGAATCGCGCATACCCTGCGCGTCGCCGCCTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTTTATAAATCCGGAGATACGGAAACTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCACCCCGAAAGAGATTGCCAGCCAGCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCACCAGCGCGTTTTTTGCCGGGGCCATAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGAACTCACCACGATTGTTAATATGGACGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP044298|1|1|456315-457199|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCGCAGACGCGCGGCGATACGCTCACGCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCCGAAGCCAAAGGTGATGCCGAACACGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTCCCTGTCGGTTGTAATTGATAATGTTGA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGATCGGGTCTGGAATTTCTGAGCGGTCGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGAATCGCGCATACCCTGCGCGTCGCCGCCTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTTTATAAATCCGGAGATACGGAAACTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCACCCCGAAAGAGATTGCCAGCCAGCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCACCAGCGCGTTTTTTGCCGGGGCCATAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGAACTCACCACGATTGTTAATATGGACGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGGCGCATGACCGTAAACATTATCCCCCGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGTTCAGACATAGGTGGAATGATGGACTAC
GAGTTCCCCGCGTTAGCGGGGATAAACCG	CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA
GAGTTCCCCGCGCCAGCAGGGATAAACCG	GCAACGACGGTGAGATTTCACGCCTGACGCTG
GTGTTCCCCGCATCAGCGGGGATAAACCG

>NZ_CP044298|1|1|456315-457199|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCGCAGACGCGCGGCGATACGCTCACGCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCCGAAGCCAAAGGTGATGCCGAACACGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTCCCTGTCGGTTGTAATTGATAATGTTGA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGATCGGGTCTGGAATTTCTGAGCGGTCGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGAATCGCGCATACCCTGCGCGTCGCCGCCTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTTTATAAATCCGGAGATACGGAAACTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCACCCCGAAAGAGATTGCCAGCCAGCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCACCAGCGCGTTTTTTGCCGGGGCCATAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGAACTCACCACGATTGTTAATATGGACGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGGCGCATGACCGTAAACATTATCCCCCGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGTTCAGACATAGGTGGAATGATGGACTAC
GAGTTCCCCGCGTTAGCGGGGATAAACCG	CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA
GAGTTCCCCGCGCCAGCAGGGATAAACCG	GCAACGACGGTGAGATTTCACGCCTGACGCTG
GTGTTCCCCGCATCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044298.1\|WP_000039850.1\|446428_447163_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP044298.1\|WP_001090361.1\|459480_460908_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP044298.1\|WP_001219242.1\|463119_463599_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP044298.1\|WP_000220066.1\|455005_455923_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP044298.1\|WP_000490428.1\|457281_458319_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP044298.1\|WP_001173673.1\|460907_461513_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP044298.1\|WP_000568943.1\|463595_464645_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP044298.1\|WP_000211906.1\|442843_444643_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP044298.1\|WP_000752800.1\|452140_452623_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|187801
NZ_CP044298.1\|WP_000372108.1\|458570_459479_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP044298.1\|WP_001295182.1\|464625_465387_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP044298.1\|WP_000281400.1\|454390_454990_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP044298.1\|WP_000517476.1\|462079_462391_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP044298.1\|WP_001246104.1\|461562_461886_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP044298.1\|WP_000246138.1\|462409_463120_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP044298.1\|WP_000987944.1\|442162_442528_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP044298.1\|WP_001381369.1\|455924_456209_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP044298.1\|WP_157704898.1\|447521_450188_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP044298.1\|WP_000064450.1\|452635_453727_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP044298.1\|WP_001334996.1\|453729_454404_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842

Protein	Function_ID	Function_description	E-value
NZ_CP044298.1\|WP_000039850.1\|446428_447163_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.39575e-137
NZ_CP044298.1\|WP_001090361.1\|459480_460908_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP044298.1\|WP_001219242.1\|463119_463599_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP044298.1\|WP_000220066.1\|455005_455923_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.68794e-159
NZ_CP044298.1\|WP_000490428.1\|457281_458319_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP044298.1\|WP_001173673.1\|460907_461513_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP044298.1\|WP_000568943.1\|463595_464645_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP044298.1\|WP_000211906.1\|442843_444643_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP044298.1\|WP_000752800.1\|452140_452623_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187801	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.76293e-33
NZ_CP044298.1\|WP_000372108.1\|458570_459479_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP044298.1\|WP_001295182.1\|464625_465387_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP044298.1\|WP_000281400.1\|454390_454990_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.81669e-101
NZ_CP044298.1\|WP_000517476.1\|462079_462391_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP044298.1\|WP_001246104.1\|461562_461886_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP044298.1\|WP_000246138.1\|462409_463120_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP044298.1\|WP_000987944.1\|442162_442528_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	9.8593e-60
NZ_CP044298.1\|WP_001381369.1\|455924_456209_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	4.76227e-62
NZ_CP044298.1\|WP_157704898.1\|447521_450188_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	0
NZ_CP044298.1\|WP_000064450.1\|452635_453727_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	5.43824e-154
NZ_CP044298.1\|WP_001334996.1\|453729_454404_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	2.15381e-103

>NZ_CP044298.1|WP_001381369.1|455924_456209_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIWEQIAGLAEEGNVVMAWATNTETGFEFQTFGLNRRTPVDLDGLRLVSFLPV
>NZ_CP044298.1|WP_000220066.1|455005_455923_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS
>NZ_CP044298.1|WP_000281400.1|454390_454990_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSKVIIARAWSRDLYQLHQGLWHLFPNRPDAARDFLFHVEKRNTPEGCHVLLQSAQMPVSTAVATVIKTKQVEFQLQVGVPLYFRLRANPIKTILDNQKRLDSKGNIKRCRVPLIKEAEQIAWLQRKLGNAARVEDVHPISERPQYFSGDGKSGKIQTVCFEGVLTINDAPALIDLVQQGIGPAKSMGCGLLSLAPL
>NZ_CP044298.1|WP_001334996.1|453729_454404_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MRSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTVALWLTPHATMVISELEKAVLKPRYTPYLGRRSCPLTHPLFLGTCQASDPQKALLNYEPVGGDIYSEESVTGHHLKFTARDEPMITLPRQFASREWYVIKGGMDVSQ
>NZ_CP044298.1|WP_000064450.1|452635_453727_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSGYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKSVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMTELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA
>NZ_CP044298.1|WP_000752800.1|452140_452623_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MADEIDAMALYRAWQQLDNGSCAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQDKKSEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKNA
>NZ_CP044298.1|WP_157704898.1|447521_450188_+|CRISPR-associated-helicase/endonuclease-Cas3
MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPIYLADMLPDLTMLERMIAAANAGAQICLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK
>NZ_CP044298.1|WP_000039850.1|446428_447163_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP044298.1|WP_000211906.1|442843_444643_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKDGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>NZ_CP044298.1|WP_000987944.1|442162_442528_-|6-carboxytetrahydropterin-synthase-QueD
MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP044298.1|WP_000490428.1|457281_458319_-|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTPAFPAGNSWHDVRLDNHQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP044298.1|WP_000372108.1|458570_459479_+|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP044298.1|WP_001090361.1|459480_460908_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP044298.1|WP_001173673.1|460907_461513_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP044298.1|WP_001246104.1|461562_461886_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP044298.1|WP_000517476.1|462079_462391_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP044298.1|WP_000246138.1|462409_463120_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP044298.1|WP_001219242.1|463119_463599_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP044298.1|WP_000568943.1|463595_464645_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP044298.1|WP_001295182.1|464625_465387_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: NZ_CP044298_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044298_2

945424-945541

Orphan

Consensus_repeat	Method
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044298_2

>merge|NZ_CP044298|2|945424-945541|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGCTGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAACCGAGCCGTAGGCCGGATAAGGCGTTTACGC

>NZ_CP044298|2|2|945424-945541|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	TGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA
CCGAGCCGTAGGCCGGATAAGGCGTTTACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044298.1\|WP_097451493.1\|948536_952289_+\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	unknown	unknown	gnl\|CDD\|182059
NZ_CP044298.1\|WP_001209927.1\|937186_938446_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|225617
NZ_CP044298.1\|WP_157704909.1\|943238_943889_+\|lipopolysaccharide-kinase-InaA	unknown	unknown	gnl\|CDD\|182136
NZ_CP044298.1\|WP_001225852.1\|964562_965339_+\|YfaP-family-protein	unknown	unknown	gnl\|CDD\|227021
NZ_CP044298.1\|WP_000990765.1\|952416_953139_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
NZ_CP044298.1\|WP_001281242.1\|953285_955913_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP044298.1\|WP_000332037.1\|944196_945327_-\|ribonucleoside-diphosphate-reductase-1-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NZ_CP044298.1\|WP_123056671.1\|958513_962908_+\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP044298.1\|WP_001295211.1\|957746_958370_+\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
NZ_CP044298.1\|WP_000012305.1\|956061_957750_+\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
NZ_CP044298.1\|WP_000857257.1\|938435_940064_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
NZ_CP044298.1\|WP_000992954.1\|933934_934738_+\|2-keto-3-deoxy-L-rhamnonate-aldolase	unknown	unknown	gnl\|CDD\|182257
NZ_CP044298.1\|WP_000779105.1\|941699_942776_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
NZ_CP044298.1\|WP_000140569.1\|934976_935876_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|182167
NZ_CP044298.1\|WP_000786547.1\|965412_966597_-\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_CP044298.1\|WP_000948731.1\|940336_941695_+\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
NZ_CP044298.1\|WP_000150333.1\|934778_934964_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182167
NZ_CP044298.1\|WP_157704911.1\|962908_964558_+\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732
NZ_CP044298.1\|WP_001075164.1\|945560_947846_-\|ribonucleoside-diphosphate-reductase-1-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_CP044298.1\|WP_000135040.1\|943942_944197_-\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	unknown	unknown	gnl\|CDD\|182668

Protein	Function_ID	Function_description	E-value
NZ_CP044298.1\|WP_097451493.1\|948536_952289_+\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
NZ_CP044298.1\|WP_001209927.1\|937186_938446_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
NZ_CP044298.1\|WP_157704909.1\|943238_943889_+\|lipopolysaccharide-kinase-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	1.10195e-157
NZ_CP044298.1\|WP_001225852.1\|964562_965339_+\|YfaP-family-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	4.17009e-153
NZ_CP044298.1\|WP_000990765.1\|952416_953139_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.65303e-171
NZ_CP044298.1\|WP_001281242.1\|953285_955913_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP044298.1\|WP_000332037.1\|944196_945327_-\|ribonucleoside-diphosphate-reductase-1-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NZ_CP044298.1\|WP_123056671.1\|958513_962908_+\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP044298.1\|WP_001295211.1\|957746_958370_+\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	7.99004e-141
NZ_CP044298.1\|WP_000012305.1\|956061_957750_+\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP044298.1\|WP_000857257.1\|938435_940064_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
NZ_CP044298.1\|WP_000992954.1\|933934_934738_+\|2-keto-3-deoxy-L-rhamnonate-aldolase	gnl\|CDD\|182257	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional.	0
NZ_CP044298.1\|WP_000779105.1\|941699_942776_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
NZ_CP044298.1\|WP_000140569.1\|934976_935876_-\|ISNCY-family-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
NZ_CP044298.1\|WP_000786547.1\|965412_966597_-\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NZ_CP044298.1\|WP_000948731.1\|940336_941695_+\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
NZ_CP044298.1\|WP_000150333.1\|934778_934964_-\|hypothetical-protein	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	1.35852e-30
NZ_CP044298.1\|WP_157704911.1\|962908_964558_+\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	4.21665e-127
NZ_CP044298.1\|WP_001075164.1\|945560_947846_-\|ribonucleoside-diphosphate-reductase-1-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP044298.1\|WP_000135040.1\|943942_944197_-\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53

>NZ_CP044298.1|WP_000332037.1|944196_945327_-|ribonucleoside-diphosphate-reductase-1-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL
>NZ_CP044298.1|WP_000135040.1|943942_944197_-|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>NZ_CP044298.1|WP_157704909.1|943238_943889_+|lipopolysaccharide-kinase-InaA
MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGNAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPTPKADWEQVKAYYYAM
>NZ_CP044298.1|WP_000779105.1|941699_942776_+|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>NZ_CP044298.1|WP_000948731.1|940336_941695_+|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQERNGG
>NZ_CP044298.1|WP_000857257.1|938435_940064_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>NZ_CP044298.1|WP_001209927.1|937186_938446_-|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYSLLEPQRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>NZ_CP044298.1|WP_000140569.1|934976_935876_-|ISNCY-family-transposase
MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIEEIAERSPLQKERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLEQGFEREIVLATTQLTDADIPNCH
>NZ_CP044298.1|WP_000150333.1|934778_934964_-|hypothetical-protein
MTIAERLRQEGHQIGWQEGKLEGLHEQAIKIALRMLEQGFDRDQVLAATQLSEADLAANNH
>NZ_CP044298.1|WP_000992954.1|933934_934738_+|2-keto-3-deoxy-L-rhamnonate-aldolase
MNALLSNPFKERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSGKNGPRIKGSY
>NZ_CP044298.1|WP_001075164.1|945560_947846_-|ribonucleoside-diphosphate-reductase-1-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>NZ_CP044298.1|WP_097451493.1|948536_952289_+|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC
MRIIFLRKEYLSLLPSMIASLFSANGVAAVTDSCQGYDVKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLMEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>NZ_CP044298.1|WP_000990765.1|952416_953139_-|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK
>NZ_CP044298.1|WP_001281242.1|953285_955913_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>NZ_CP044298.1|WP_000012305.1|956061_957750_+|DUF2138-domain-containing-protein
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>NZ_CP044298.1|WP_001295211.1|957746_958370_+|DUF1175-domain-containing-protein
MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>NZ_CP044298.1|WP_123056671.1|958513_962908_+|alpha-2-macroglobulin-family-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVKQFRYPLWQAKPFEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGKELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVIGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALAKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTAHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVVVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQAIGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDTRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQTAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEDWRWVGQGVPDILSFGDELSPQNVQVRWREPAKMAQQSNIPVTVERQLYRLIPGEEEMSFILQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
>NZ_CP044298.1|WP_157704911.1|962908_964558_+|DUF2300-domain-containing-protein
MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQLSSSGVTKVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVNPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWTQDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQAETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRPLLMD
>NZ_CP044298.1|WP_001225852.1|964562_965339_+|YfaP-family-protein
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPIHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>NZ_CP044298.1|WP_000786547.1|965412_966597_-|acetyl-CoA-C-acetyltransferase
MKNCVIVSAVRTAIGSFNGSLASTSAIDLGATVIKAAIERAKIDSQHVDEVIMGNVLQAGLGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQDEFPKANSTAEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESAALAAGLTPLARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKNLGFDSEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN

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Crispr_ID: NZ_CP044298_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044298_3

1574956-1575079

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044298_3

>merge|NZ_CP044298|3|1574956-1575079|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP044298|3|3|1574956-1575079|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044298.1\|WP_000269501.1\|1581722_1582655_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP044298.1\|WP_001182363.1\|1580398_1581610_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP044298.1\|WP_000007283.1\|1585634_1586216_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP044298.1\|WP_000534271.1\|1575393_1576650_+\|autotransporter-adhesin-related-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP044298.1\|WP_001310861.1\|1570507_1571176_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP044298.1\|WP_000701040.1\|1584230_1585400_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP044298.1\|WP_000190982.1\|1582651_1583677_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP044298.1\|WP_001070230.1\|1567043_1567670_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP044298.1\|WP_000528342.1\|1566386_1566596_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP044298.1\|WP_001174940.1\|1576690_1578064_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP044298.1\|WP_000212657.1\|1574515_1574821_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP044298.1\|WP_001295403.1\|1564417_1565830_-\|pyruvate-kinase-I	unknown	unknown	gnl\|CDD\|181699
NZ_CP044298.1\|WP_000716950.1\|1572785_1574390_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP044298.1\|WP_000098896.1\|1578959_1580108_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP044298.1\|WP_000493947.1\|1578278_1578920_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP044298.1\|WP_000587525.1\|1571961_1572774_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP044298.1\|WP_000102278.1\|1583975_1584065_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP044298.1\|WP_001273527.1\|1567690_1569793_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP044298.1\|WP_001069979.1\|1571172_1571958_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP044298.1\|WP_000517579.1\|1569796_1570444_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160

Protein	Function_ID	Function_description	E-value
NZ_CP044298.1\|WP_000269501.1\|1581722_1582655_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP044298.1\|WP_001182363.1\|1580398_1581610_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP044298.1\|WP_000007283.1\|1585634_1586216_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_CP044298.1\|WP_000534271.1\|1575393_1576650_+\|autotransporter-adhesin-related-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP044298.1\|WP_001310861.1\|1570507_1571176_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.09652e-76
NZ_CP044298.1\|WP_000701040.1\|1584230_1585400_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
NZ_CP044298.1\|WP_000190982.1\|1582651_1583677_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP044298.1\|WP_001070230.1\|1567043_1567670_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
NZ_CP044298.1\|WP_000528342.1\|1566386_1566596_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP044298.1\|WP_001174940.1\|1576690_1578064_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP044298.1\|WP_000212657.1\|1574515_1574821_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.12003e-64
NZ_CP044298.1\|WP_001295403.1\|1564417_1565830_-\|pyruvate-kinase-I	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP044298.1\|WP_000716950.1\|1572785_1574390_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP044298.1\|WP_000098896.1\|1578959_1580108_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP044298.1\|WP_000493947.1\|1578278_1578920_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP044298.1\|WP_000587525.1\|1571961_1572774_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	2.57656e-174
NZ_CP044298.1\|WP_001273527.1\|1567690_1569793_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP044298.1\|WP_001069979.1\|1571172_1571958_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	5.40835e-163
NZ_CP044298.1\|WP_000517579.1\|1569796_1570444_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	3.717e-122

>NZ_CP044298.1|WP_000212657.1|1574515_1574821_-|monooxygenase
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP044298.1|WP_000716950.1|1572785_1574390_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLLSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP044298.1|WP_000587525.1|1571961_1572774_+|hypothetical-protein
MIITQADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP044298.1|WP_001069979.1|1571172_1571958_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSATDHGEKIYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQTHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP044298.1|WP_001310861.1|1570507_1571176_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP044298.1|WP_000517579.1|1569796_1570444_+|YdhW-family-putative-oxidoreductase-system-protein
MGKMNHQDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYLVAEEELSVLLESIKQNGDYADIACLTGSKDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP044298.1|WP_001273527.1|1567690_1569793_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_CP044298.1|WP_001070230.1|1567043_1567670_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP044298.1|WP_000528342.1|1566386_1566596_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP044298.1|WP_001295403.1|1564417_1565830_-|pyruvate-kinase-I
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP044298.1|WP_000534271.1|1575393_1576650_+|autotransporter-adhesin-related-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGAELQQSTITVQQGGVLILDGSTVKGDSVTFIVGNINLNGGKLWLITDAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP044298.1|WP_001174940.1|1576690_1578064_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRASR
>NZ_CP044298.1|WP_000493947.1|1578278_1578920_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP044298.1|WP_000098896.1|1578959_1580108_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP044298.1|WP_001182363.1|1580398_1581610_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP044298.1|WP_000269501.1|1581722_1582655_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP044298.1|WP_000190982.1|1582651_1583677_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP044298.1|WP_000102278.1|1583975_1584065_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP044298.1|WP_000701040.1|1584230_1585400_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>NZ_CP044298.1|WP_000007283.1|1585634_1586216_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP044298_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044298_4

2240297-2240388

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044298_4

>merge|NZ_CP044298|4|2240297-2240388|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP044298|4|4|2240297-2240388|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044298.1\|WP_001393558.1\|2235656_2236349_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP044298.1\|WP_001340618.1\|2234565_2235657_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP044298.1\|WP_001120125.1\|2250546_2251239_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP044298.1\|WP_000420621.1\|2244727_2245648_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP044298.1\|WP_001326838.1\|2238680_2240009_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP044298.1\|WP_001143120.1\|2241428_2241656_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP044298.1\|WP_001028083.1\|2238165_2238660_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP044298.1\|WP_000829662.1\|2255138_2256212_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|223425
NZ_CP044298.1\|WP_000024560.1\|2245647_2245953_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP044298.1\|WP_000209894.1\|2246104_2246704_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP044298.1\|WP_000191701.1\|2233639_2234278_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP044298.1\|WP_001264933.1\|2251211_2252240_-\|TMAO-reductase-system-periplasmic-protein-TorT	unknown	unknown	gnl\|CDD\|236801
NZ_CP044298.1\|WP_001151437.1\|2240811_2241408_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP044298.1\|WP_001062091.1\|2246700_2249247_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP044298.1\|WP_000777653.1\|2236754_2237555_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP044298.1\|WP_001126780.1\|2236360_2236747_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP044298.1\|WP_001326840.1\|2229637_2233600_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP044298.1\|WP_001300633.1\|2252322_2255067_+\|TMAO-reductase-system-sensor-histidine-kinase/response-regulator-TorS	unknown	unknown	gnl\|CDD\|236914
NZ_CP044298.1\|WP_001001176.1\|2237564_2238155_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP044298.1\|WP_000979516.1\|2229373_2229583_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP044298.1\|WP_001393558.1\|2235656_2236349_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	1.22031e-169
NZ_CP044298.1\|WP_001340618.1\|2234565_2235657_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP044298.1\|WP_001120125.1\|2250546_2251239_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	1.16516e-137
NZ_CP044298.1\|WP_000420621.1\|2244727_2245648_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP044298.1\|WP_001326838.1\|2238680_2240009_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP044298.1\|WP_001143120.1\|2241428_2241656_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP044298.1\|WP_001028083.1\|2238165_2238660_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	1.5266e-105
NZ_CP044298.1\|WP_000829662.1\|2255138_2256212_+\|4Fe-4S-binding-protein	gnl\|CDD\|223425	COG0348, NapH, Polyferredoxin [Energy production and conversion].	4.59761e-60
NZ_CP044298.1\|WP_000024560.1\|2245647_2245953_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NZ_CP044298.1\|WP_000209894.1\|2246104_2246704_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	1.00485e-84
NZ_CP044298.1\|WP_000191701.1\|2233639_2234278_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.3356e-153
NZ_CP044298.1\|WP_001264933.1\|2251211_2252240_-\|TMAO-reductase-system-periplasmic-protein-TorT	gnl\|CDD\|236801	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional.	1.32852e-176
NZ_CP044298.1\|WP_001151437.1\|2240811_2241408_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP044298.1\|WP_001062091.1\|2246700_2249247_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP044298.1\|WP_000777653.1\|2236754_2237555_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	3.53291e-142
NZ_CP044298.1\|WP_001126780.1\|2236360_2236747_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP044298.1\|WP_001326840.1\|2229637_2233600_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP044298.1\|WP_001300633.1\|2252322_2255067_+\|TMAO-reductase-system-sensor-histidine-kinase/response-regulator-TorS	gnl\|CDD\|236914	PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional.	0
NZ_CP044298.1\|WP_001001176.1\|2237564_2238155_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	1.68154e-128

>NZ_CP044298.1|WP_001326838.1|2238680_2240009_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRKLVDVPPPEVVHQEP
>NZ_CP044298.1|WP_001028083.1|2238165_2238660_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPAFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHTTPYGLVWFDRSYHALMRPAC
>NZ_CP044298.1|WP_001001176.1|2237564_2238155_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLREIYALMKWGPTSANCSPARIVFTRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQHVDDAFFTGSTLKSNLLINIGYGDSSKLYARLPRLSFEEACGLL
>NZ_CP044298.1|WP_000777653.1|2236754_2237555_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMPYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP044298.1|WP_001126780.1|2236360_2236747_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP044298.1|WP_001393558.1|2235656_2236349_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPKFAQKAALFNIETFFGWVSDVETFCDALSPTSFAHIA
>NZ_CP044298.1|WP_001340618.1|2234565_2235657_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP044298.1|WP_000191701.1|2233639_2234278_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP044298.1|WP_001326840.1|2229637_2233600_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEESDRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAKYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGTIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP044298.1|WP_000979516.1|2229373_2229583_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP044298.1|WP_001151437.1|2240811_2241408_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP044298.1|WP_001143120.1|2241428_2241656_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP044298.1|WP_000420621.1|2244727_2245648_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP044298.1|WP_000024560.1|2245647_2245953_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP044298.1|WP_000209894.1|2246104_2246704_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNELENRIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTALWQWLPEFVARCRQYDSFGFYAALSQLLLVLVECDHQNR
>NZ_CP044298.1|WP_001062091.1|2246700_2249247_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATDAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGLRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP044298.1|WP_001120125.1|2250546_2251239_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>NZ_CP044298.1|WP_001264933.1|2251211_2252240_-|TMAO-reductase-system-periplasmic-protein-TorT
MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK
>NZ_CP044298.1|WP_001300633.1|2252322_2255067_+|TMAO-reductase-system-sensor-histidine-kinase/response-regulator-TorS
MNLTLTRRLWMGFALMALLTLTSTLVGWYNLRFISQVEKDNTQALIPTMNMARQLSEASAWELFAAQNLTSADNEKMWQAQGRMLTAQSLKINALLQALREQGFDTTAIEQQEQEISRSLRQQGELVGQRLQLRQQQQQLSQQIVAAADEIARLAQGQANNATTSAGATQAGIYDLIEQDQRQAAESALDRLIDIDLEYVNQMNELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRIEDPGVRAQVATTLTTVSQYSDLLALYQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDTIELRNQHGLAHLEKASARGQYSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEGYIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGLRLLLIEDNPLTQRITIEMLKTSGAQIVAVGNAAQALETLQNSEPFAAALVDFDLPDIDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQVNNDQSLDVSQLNEDAQLMGTEKIHEWLVLFTQHALPLLDEIDIARASQDSEKIKRAAHQLKSSCSSLGMHIASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLHKKDLNAI
>NZ_CP044298.1|WP_000829662.1|2255138_2256212_+|4Fe-4S-binding-protein
MAENKRTRWQRRPGTTGGKLPWNDWRNATTWRKATQLLLLAMNIYIAITFWYWVRYYETASSTTFVARPGGIEGWLPIAGLMNLKYSLVTGQLPSVHAAAMLLLVAFIVISLLLKKAFCSWLCPVGTLSELIGDLGNKLFGRQCVLPRWLDIPLRGVKYLLLSFFIYIALLMPAQAIHYFMLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLSPFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQKPAANKKAFALSGWLMTLLVLGIMFAVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH

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Crispr_ID: NZ_CP044298_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044298_5

2545346-2545490

Orphan

Consensus_repeat	Method
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044298_5

>merge|NZ_CP044298|5|2545346-2545490|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

>NZ_CP044298|5|5|2545346-2545490|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	TGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTC
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044298.1\|WP_001036475.1\|2547957_2549391_-\|anion-permease	unknown	unknown	gnl\|CDD\|279307
NZ_CP044298.1\|WP_061351518.1\|2542595_2542814_+\|excisionase	unknown	unknown	gnl\|CDD\|116439
NZ_CP044298.1\|WP_000763389.1\|2541966_2542185_+\|TraR/DksA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|222775
NZ_CP044298.1\|WP_001091569.1\|2543996_2545280_+\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP044298.1\|WP_000548531.1\|2541384_2541576_+\|DUF1382-family-protein	unknown	unknown	gnl\|CDD\|369224
NZ_CP044298.1\|WP_000604034.1\|2554725_2555415_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181841
NZ_CP044298.1\|WP_000723652.1\|2549466_2550519_-\|4-oxalomesaconate-tautomerase	unknown	unknown	gnl\|CDD\|380230
NZ_CP044298.1\|WP_000891692.1\|2553664_2554723_-\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
NZ_CP044298.1\|WP_000891515.1\|2556354_2556504_-\|multidrug-efflux-pump-associated-protein,-AcrZ-family	unknown	unknown	gnl\|CDD\|371231
NZ_CP044298.1\|WP_000593938.1\|2545513_2547775_-\|hydratase	unknown	unknown	gnl\|CDD\|183125
NZ_CP044298.1\|WP_000533645.1\|2542791_2543862_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271181
NZ_CP044298.1\|WP_001147439.1\|2556632_2557421_+\|molybdenum-dependent-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182640
NZ_CP044298.1\|WP_097451603.1\|2555414_2556188_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
NZ_CP044298.1\|WP_077630928.1\|2541586_2541868_+\|cell-division-protein-ZapA	unknown	unknown	unknown
NZ_CP044298.1\|WP_000815435.1\|2551695_2552691_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|182912
NZ_CP044298.1\|WP_000682306.1\|2541229_2541412_+\|DUF1317-domain-containing-protein	unknown	unknown	gnl\|CDD\|284449
NZ_CP044298.1\|WP_000100845.1\|2539770_2540556_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP044298.1\|WP_001300666.1\|2552845_2553664_+\|pyridoxal-phosphatase	unknown	unknown	gnl\|CDD\|182523
NZ_CP044298.1\|WP_000488407.1\|2542231_2542510_+\|DUF4222-domain-containing-protein	unknown	unknown	gnl\|CDD\|372855
NZ_CP044298.1\|WP_000186779.1\|2540552_2541233_+\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216

Protein	Function_ID	Function_description	E-value
NZ_CP044298.1\|WP_001036475.1\|2547957_2549391_-\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	0
NZ_CP044298.1\|WP_061351518.1\|2542595_2542814_+\|excisionase	gnl\|CDD\|116439	pfam07825, Exc, Excisionase-like protein. The phage-encoded excisionase protein (Xis) is involved in excisive recombination by regulating the assembly of the excisive intasome and by inhibiting viral integration. It adopts an unusual 'winged'-helix structure in which two alpha helices are packed against two extended strands. Also present in the structure is a two-stranded anti-parallel beta-sheet, whose strands are connected by a four-residue 'wing'. During interaction with DNA, helix alpha2 is thought to insert into the major groove, while the wing contacts the adjacent minor groove or phosphodiester backbone. The C-terminal region of Xis is involved in interaction with phage-encoded integrase (Int), and a putative C-terminal alpha helix may fold upon interaction with Int and/or DNA.	9.50635e-35
NZ_CP044298.1\|WP_000763389.1\|2541966_2542185_+\|TraR/DksA-family-transcriptional-regulator	gnl\|CDD\|222775	PHA00080, PHA00080, DksA-like zinc finger domain containing protein.	5.87696e-25
NZ_CP044298.1\|WP_000593938.1\|2545513_2547775_-\|hydratase	gnl\|CDD\|183125	PRK11413, PRK11413, putative hydratase; Provisional.	0
NZ_CP044298.1\|WP_000548531.1\|2541384_2541576_+\|DUF1382-family-protein	gnl\|CDD\|369224	pfam07131, DUF1382, Protein of unknown function (DUF1382). This family consists of several hypothetical Escherichia coli and bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	7.90907e-23
NZ_CP044298.1\|WP_000604034.1\|2554725_2555415_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	2.41762e-146
NZ_CP044298.1\|WP_000723652.1\|2549466_2550519_-\|4-oxalomesaconate-tautomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
NZ_CP044298.1\|WP_000891692.1\|2553664_2554723_-\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
NZ_CP044298.1\|WP_000891515.1\|2556354_2556504_-\|multidrug-efflux-pump-associated-protein,-AcrZ-family	gnl\|CDD\|371231	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ. AcrZ is associated with the AcrA-TolC multidrug efflux pump, it may enhance the ability of the pump to recognize and export certain substrates.	1.04381e-17
NZ_CP044298.1\|WP_001091569.1\|2543996_2545280_+\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_CP044298.1\|WP_000533645.1\|2542791_2543862_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271181	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.	3.41419e-62
NZ_CP044298.1\|WP_001147439.1\|2556632_2557421_+\|molybdenum-dependent-transcriptional-regulator	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	0
NZ_CP044298.1\|WP_097451603.1\|2555414_2556188_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	0
NZ_CP044298.1\|WP_000815435.1\|2551695_2552691_-\|6-phosphogluconolactonase	gnl\|CDD\|182912	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.	0
NZ_CP044298.1\|WP_000682306.1\|2541229_2541412_+\|DUF1317-domain-containing-protein	gnl\|CDD\|284449	pfam07026, DUF1317, Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown.	8.71166e-35
NZ_CP044298.1\|WP_000100845.1\|2539770_2540556_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	1.14724e-64
NZ_CP044298.1\|WP_001300666.1\|2552845_2553664_+\|pyridoxal-phosphatase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	0
NZ_CP044298.1\|WP_000488407.1\|2542231_2542510_+\|DUF4222-domain-containing-protein	gnl\|CDD\|372855	pfam13973, DUF4222, Domain of unknown function (DUF4222). This short protein is likely to be of phage origin. For example it is found in the Enterobacteria phage YYZ-2008. It is largely found in enteric bacteria. The molecular function of this protein is unknown.	1.49652e-15
NZ_CP044298.1\|WP_000186779.1\|2540552_2541233_+\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	2.98796e-29

>NZ_CP044298.1|WP_001091569.1|2543996_2545280_+|putative-acyl-CoA-thioester-hydrolase
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK
>NZ_CP044298.1|WP_000533645.1|2542791_2543862_+|tyrosine-type-recombinase/integrase
MGRRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKKILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK
>NZ_CP044298.1|WP_061351518.1|2542595_2542814_+|excisionase
MYLTLQEWNARQRRPRSLETVRRWVRECRIFPPPIKDGREYLFHESAVKVDLNRPVTGSLLKRIKNGKKAKS
>NZ_CP044298.1|WP_000488407.1|2542231_2542510_+|DUF4222-domain-containing-protein
MFRIIFPNTWYVDHHGTPCKILRSTHNKVHYIRKGRTCIASMFRFNHDFEPVNKADADRIAEEIETAEHIKKLRDMRSKSRGNHGIIQPHTR
>NZ_CP044298.1|WP_000763389.1|2541966_2542185_+|TraR/DksA-family-transcriptional-regulator
MADIIDSASEIEELQRNTAIKMRRPNHQAISATHCCECGDPIDERRRLAVQGCRTCASCQEEIELKNKQWGL
>NZ_CP044298.1|WP_077630928.1|2541586_2541868_+|cell-division-protein-ZapA
MHFSGSGLHILCAYACRHGTCSMTPQQENALRSIARQANSEIKKARQQFPDKNVDDICRSVLKKHRETVTLMGFTPTHLSLAIGMLNGAFKER
>NZ_CP044298.1|WP_000548531.1|2541384_2541576_+|DUF1382-family-protein
MHKASPVELRTSIEMAHSLAQIGVRFVPIPVETDEEFHTLAASLSQKLEMMVAKAEADERDQV
>NZ_CP044298.1|WP_000682306.1|2541229_2541412_+|DUF1317-domain-containing-protein
MKHPHDNIRVGAITFVYSVTKRGWVFPGLSVIRNPLKAQRLAEEINNKRGAVCTKHLPLS
>NZ_CP044298.1|WP_000186779.1|2540552_2541233_+|YqaJ-viral-recombinase-family-protein
MTPDIILQRTGIDVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQYENDARALFEFTSGVNVTESPIIYRDESMRTACSPDGLCSDGNGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQYSMWVTRKDAWYFANYDPRMKREGLHYVVIERDEKYMASFDEMVPEFIEKMDEALAEIGFVFGEQWR
>NZ_CP044298.1|WP_000100845.1|2539770_2540556_+|phage-recombination-protein-Bet
MSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQFIALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVDGWSRIINENQQFDGMDFEQDNESCTCRIYRKDRNHPICVTEWMDECRREPFKTREGREITGPWQSHPKRMLRHKAMIQCARLAFGFAGIYDKDEAERIVENTAYTAERQPERDITPVNDETMQEINTLLIALDKTWDDDLLPLCSQIFRRDIRASSELTQAEAVKALGFLKQKASEQKVAA
>NZ_CP044298.1|WP_000593938.1|2545513_2547775_-|hydratase
MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVSRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM
>NZ_CP044298.1|WP_001036475.1|2547957_2549391_-|anion-permease
MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
>NZ_CP044298.1|WP_000723652.1|2549466_2550519_-|4-oxalomesaconate-tautomerase
MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
>NZ_CP044298.1|WP_000815435.1|2551695_2552691_-|6-phosphogluconolactonase
MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
>NZ_CP044298.1|WP_001300666.1|2552845_2553664_+|pyridoxal-phosphatase
MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVIKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI
>NZ_CP044298.1|WP_000891692.1|2553664_2554723_-|molybdenum-ABC-transporter-ATP-binding-protein-ModC
MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA
>NZ_CP044298.1|WP_000604034.1|2554725_2555415_-|molybdate-ABC-transporter-permease-subunit
MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR
>NZ_CP044298.1|WP_097451603.1|2555414_2556188_-|molybdate-ABC-transporter-substrate-binding-protein
MARKWLSLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTIK
>NZ_CP044298.1|WP_000891515.1|2556354_2556504_-|multidrug-efflux-pump-associated-protein,-AcrZ-family
MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQPGQNH
>NZ_CP044298.1|WP_001147439.1|2556632_2557421_+|molybdenum-dependent-transcriptional-regulator
MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYDLLAQIQQKAFDVLSDDDALPLNSLLAAISRFSLQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIATLC

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Crispr_ID: NZ_CP044298_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044298_6

2775867-2775963

Orphan

Consensus_repeat	Method
TTGTAGGCCTGATAAGATGCGTCAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044298_6

>merge|NZ_CP044298|6|2775867-2775963|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGCATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGGTTGTAGGCCTGATAAGACGCGTCAAGC

>NZ_CP044298|6|6|2775867-2775963|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGC	ATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGG
TTGTAGGCCTGATAAGACGCGTCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044298.1\|WP_000255997.1\|2772891_2773386_+\|peptidylprolyl-isomerase-B	unknown	unknown	gnl\|CDD\|182734
NZ_CP044298.1\|WP_096943846.1\|2775996_2776890_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
NZ_CP044298.1\|WP_000152519.1\|2776886_2777702_-\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
NZ_CP044298.1\|WP_000540997.1\|2783282_2784068_+\|(S)-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|200251
NZ_CP044298.1\|WP_128448728.1\|2768576_2769119_-\|type-1-fimbrial-protein-subunit-FimA	unknown	unknown	gnl\|CDD\|237920
NZ_CP044298.1\|WP_001333621.1\|2784295_2785441_-\|glycerate-3-kinase	unknown	unknown	gnl\|CDD\|182152
NZ_CP044298.1\|WP_000815571.1\|2774734_2775802_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP044298.1\|WP_000580822.1\|2778981_2780649_-\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
NZ_CP044298.1\|WP_000212247.1\|2773388_2774111_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP044298.1\|WP_001302767.1\|2785462_2786764_-\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
NZ_CP044298.1\|WP_000912385.1\|2771332_2772718_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP044298.1\|WP_000988364.1\|2767664_2768357_-\|type-1-fimbria-chaperone-FimC	unknown	unknown	gnl\|CDD\|185117
NZ_CP044298.1\|WP_001310618.1\|2782036_2783272_+\|allantoate-deiminase	unknown	unknown	gnl\|CDD\|274471
NZ_CP044298.1\|WP_001143542.1\|2770775_2771297_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP044298.1\|WP_001295318.1\|2774228_2774738_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NZ_CP044298.1\|WP_000190288.1\|2770455_2770668_+\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
NZ_CP044298.1\|WP_000703900.1\|2780965_2782015_+\|ureidoglycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|184985
NZ_CP044298.1\|WP_000729160.1\|2769587_2770454_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NZ_CP044298.1\|WP_157705061.1\|2786820_2788182_-\|allantoinase-AllB	unknown	unknown	gnl\|CDD\|169193
NZ_CP044298.1\|WP_000495367.1\|2777712_2778972_-\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673

Protein	Function_ID	Function_description	E-value
NZ_CP044298.1\|WP_000255997.1\|2772891_2773386_+\|peptidylprolyl-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	9.12357e-121
NZ_CP044298.1\|WP_096943846.1\|2775996_2776890_-\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
NZ_CP044298.1\|WP_000152519.1\|2776886_2777702_-\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	3.47659e-37
NZ_CP044298.1\|WP_000540997.1\|2783282_2784068_+\|(S)-ureidoglycine-aminohydrolase	gnl\|CDD\|200251	TIGR03214, ura-cupin, putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).	2.39799e-151
NZ_CP044298.1\|WP_128448728.1\|2768576_2769119_-\|type-1-fimbrial-protein-subunit-FimA	gnl\|CDD\|237920	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA.	1.20231e-91
NZ_CP044298.1\|WP_001333621.1\|2784295_2785441_-\|glycerate-3-kinase	gnl\|CDD\|182152	PRK09932, PRK09932, glycerate 3-kinase.	0
NZ_CP044298.1\|WP_000815571.1\|2774734_2775802_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	2.50904e-178
NZ_CP044298.1\|WP_000580822.1\|2778981_2780649_-\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
NZ_CP044298.1\|WP_000212247.1\|2773388_2774111_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	2.41122e-165
NZ_CP044298.1\|WP_001302767.1\|2785462_2786764_-\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
NZ_CP044298.1\|WP_000912385.1\|2771332_2772718_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP044298.1\|WP_000988364.1\|2767664_2768357_-\|type-1-fimbria-chaperone-FimC	gnl\|CDD\|185117	PRK15195, PRK15195, molecular chaperone FimC.	4.4332e-149
NZ_CP044298.1\|WP_001310618.1\|2782036_2783272_+\|allantoate-deiminase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NZ_CP044298.1\|WP_001143542.1\|2770775_2771297_+\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	4.92496e-31
NZ_CP044298.1\|WP_001295318.1\|2774228_2774738_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.14024e-91
NZ_CP044298.1\|WP_000190288.1\|2770455_2770668_+\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
NZ_CP044298.1\|WP_000703900.1\|2780965_2782015_+\|ureidoglycolate-dehydrogenase	gnl\|CDD\|184985	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.	0
NZ_CP044298.1\|WP_000729160.1\|2769587_2770454_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NZ_CP044298.1\|WP_157705061.1\|2786820_2788182_-\|allantoinase-AllB	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
NZ_CP044298.1\|WP_000495367.1\|2777712_2778972_-\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.27269e-131

>NZ_CP044298.1|WP_000815571.1|2774734_2775802_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDVNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>NZ_CP044298.1|WP_001295318.1|2774228_2774738_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>NZ_CP044298.1|WP_000212247.1|2773388_2774111_+|UDP-2,3-diacylglucosamine-diphosphatase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRKMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQTLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>NZ_CP044298.1|WP_000255997.1|2772891_2773386_+|peptidylprolyl-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>NZ_CP044298.1|WP_000912385.1|2771332_2772718_-|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>NZ_CP044298.1|WP_001143542.1|2770775_2771297_+|metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVFIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMLLMGMLWWRRR
>NZ_CP044298.1|WP_000190288.1|2770455_2770668_+|ribosome-associated-protein-YbcJ
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>NZ_CP044298.1|WP_000729160.1|2769587_2770454_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>NZ_CP044298.1|WP_128448728.1|2768576_2769119_-|type-1-fimbrial-protein-subunit-FimA
MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNISALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE
>NZ_CP044298.1|WP_000988364.1|2767664_2768357_-|type-1-fimbria-chaperone-FimC
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN
>NZ_CP044298.1|WP_096943846.1|2775996_2776890_-|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTDDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMAPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>NZ_CP044298.1|WP_000152519.1|2776886_2777702_-|DUF2877-domain-containing-protein
MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRPFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>NZ_CP044298.1|WP_000495367.1|2777712_2778972_-|DUF1116-domain-containing-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNEGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPSWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>NZ_CP044298.1|WP_000580822.1|2778981_2780649_-|acyl-CoA-synthetase-FdrA
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQALMQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIHPLSPAAQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>NZ_CP044298.1|WP_000703900.1|2780965_2782015_+|ureidoglycolate-dehydrogenase
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>NZ_CP044298.1|WP_001310618.1|2782036_2783272_+|allantoate-deiminase
MITHFRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>NZ_CP044298.1|WP_000540997.1|2783282_2784068_+|(S)-ureidoglycine-aminohydrolase
MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
>NZ_CP044298.1|WP_001333621.1|2784295_2785441_-|glycerate-3-kinase
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNDIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQALAANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN
>NZ_CP044298.1|WP_001302767.1|2785462_2786764_-|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>NZ_CP044298.1|WP_157705061.1|2786820_2788182_-|allantoinase-AllB
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGMVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHVSSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ

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Crispr_ID: NZ_CP044298_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044298_7

2916076-2916220

Orphan

Consensus_repeat	Method
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044298_7

>merge|NZ_CP044298|7|2916076-2916220|CRISPRCasFinder
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATCGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACCTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT

>NZ_CP044298|7|7|2916076-2916220|CRISPRCasFinder
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	CGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACC
TTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044298.1\|WP_001298537.1\|2917276_2918188_+\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|225521
NZ_CP044298.1\|WP_001295331.1\|2921649_2922459_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_CP044298.1\|WP_000941942.1\|2918834_2919119_-\|pyrimidine/purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|182565
NZ_CP044298.1\|WP_000893623.1\|2908112_2909408_-\|phosphate-regulon-sensor-histidine-kinase-PhoR	unknown	unknown	gnl\|CDD\|182895
NZ_CP044298.1\|WP_001221319.1\|2910344_2911547_+\|exonuclease-subunit-SbcD	unknown	unknown	gnl\|CDD\|182871
NZ_CP044298.1\|WP_001266503.1\|2901214_2902285_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NZ_CP044298.1\|WP_001295329.1\|2904937_2906311_-\|proline-specific-permease-ProY	unknown	unknown	gnl\|CDD\|182566
NZ_CP044298.1\|WP_000484048.1\|2922475_2923591_-\|diguanylate-cyclase-AdrA	unknown	unknown	gnl\|CDD\|182329
NZ_CP044298.1\|WP_000667319.1\|2900031_2901159_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP044298.1\|WP_000158159.1\|2921071_2921530_-\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
NZ_CP044298.1\|WP_000698951.1\|2911543_2914690_+\|exonuclease-subunit-SbcC	unknown	unknown	gnl\|CDD\|182330
NZ_CP044298.1\|WP_001219309.1\|2916243_2917152_-\|fructokinase	unknown	unknown	gnl\|CDD\|236565
NZ_CP044298.1\|WP_000113933.1\|2909465_2910155_-\|phosphate-response-regulator-transcription-factor-PhoB	unknown	unknown	gnl\|CDD\|182277
NZ_CP044298.1\|WP_000193393.1\|2920364_2920889_-\|shikimate-kinase-AroL	unknown	unknown	gnl\|CDD\|235153
NZ_CP044298.1\|WP_001142439.1\|2920123_2920315_-\|protein-YaiA	unknown	unknown	gnl\|CDD\|182421
NZ_CP044298.1\|WP_120795376.1\|2918265_2918349_-\|protein-YkiD	unknown	unknown	unknown
NZ_CP044298.1\|WP_001310597.1\|2902963_2904781_-\|maltodextrin-glucosidase	unknown	unknown	gnl\|CDD\|236759
NZ_CP044298.1\|WP_000149639.1\|2906386_2907706_-\|branched-chain-amino-acid-transporter-carrier-protein-BrnQ	unknown	unknown	gnl\|CDD\|185331
NZ_CP044298.1\|WP_001276420.1\|2919190_2919868_-\|AroM-family-protein	unknown	unknown	gnl\|CDD\|182491
NZ_CP044298.1\|WP_001009885.1\|2902377_2902959_+\|ACP-phosphodiesterase	unknown	unknown	gnl\|CDD\|182207

Protein	Function_ID	Function_description	E-value
NZ_CP044298.1\|WP_001298537.1\|2917276_2918188_+\|recombination-associated-protein-RdgC	gnl\|CDD\|225521	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair].	0
NZ_CP044298.1\|WP_001295331.1\|2921649_2922459_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	1.87564e-128
NZ_CP044298.1\|WP_000941942.1\|2918834_2919119_-\|pyrimidine/purine-nucleoside-phosphorylase	gnl\|CDD\|182565	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase.	5.85948e-64
NZ_CP044298.1\|WP_000893623.1\|2908112_2909408_-\|phosphate-regulon-sensor-histidine-kinase-PhoR	gnl\|CDD\|182895	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR.	0
NZ_CP044298.1\|WP_001221319.1\|2910344_2911547_+\|exonuclease-subunit-SbcD	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	0
NZ_CP044298.1\|WP_001266503.1\|2901214_2902285_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NZ_CP044298.1\|WP_001295329.1\|2904937_2906311_-\|proline-specific-permease-ProY	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP044298.1\|WP_000484048.1\|2922475_2923591_-\|diguanylate-cyclase-AdrA	gnl\|CDD\|182329	PRK10245, adrA, diguanylate cyclase AdrA; Provisional.	0
NZ_CP044298.1\|WP_000667319.1\|2900031_2901159_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NZ_CP044298.1\|WP_000158159.1\|2921071_2921530_-\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	2.50663e-80
NZ_CP044298.1\|WP_000698951.1\|2911543_2914690_+\|exonuclease-subunit-SbcC	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	0
NZ_CP044298.1\|WP_001219309.1\|2916243_2917152_-\|fructokinase	gnl\|CDD\|236565	PRK09557, PRK09557, fructokinase; Reviewed.	0
NZ_CP044298.1\|WP_000113933.1\|2909465_2910155_-\|phosphate-response-regulator-transcription-factor-PhoB	gnl\|CDD\|182277	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB.	5.1688e-159
NZ_CP044298.1\|WP_000193393.1\|2920364_2920889_-\|shikimate-kinase-AroL	gnl\|CDD\|235153	PRK03731, aroL, shikimate kinase AroL.	2.43812e-108
NZ_CP044298.1\|WP_001142439.1\|2920123_2920315_-\|protein-YaiA	gnl\|CDD\|182421	PRK10380, PRK10380, hypothetical protein; Provisional.	5.14477e-31
NZ_CP044298.1\|WP_001310597.1\|2902963_2904781_-\|maltodextrin-glucosidase	gnl\|CDD\|236759	PRK10785, PRK10785, maltodextrin glucosidase; Provisional.	0
NZ_CP044298.1\|WP_000149639.1\|2906386_2907706_-\|branched-chain-amino-acid-transporter-carrier-protein-BrnQ	gnl\|CDD\|185331	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ.	0
NZ_CP044298.1\|WP_001276420.1\|2919190_2919868_-\|AroM-family-protein	gnl\|CDD\|182491	PRK10481, PRK10481, hypothetical protein; Provisional.	2.13662e-120
NZ_CP044298.1\|WP_001009885.1\|2902377_2902959_+\|ACP-phosphodiesterase	gnl\|CDD\|182207	PRK10045, PRK10045, ACP phosphodiesterase.	3.03368e-136

>NZ_CP044298.1|WP_000698951.1|2911543_2914690_+|exonuclease-subunit-SbcC
MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVTLLTPEQVQSLTASLQVLTDEEKQLITAQQQEQQSLNWLTRQDELQQEASRRQQALQQALAEEEKAQPQLAALSLAQPARNLRPHWERIAEHSAALAHIRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNTWLQEHDRFRQWNNEPAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNALAAITLTLTADEVATALAQHAEQRPLRQHLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGATLRGQLDAITKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPLDDIQPWLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQLLLTTLTGYALTLPQEDEEESWLATRQQEAQSWQQRQNELTALQNRIQQLTPILETLPQSDELPHCEETVVLENWRQVHEQCLALHSQQQTLQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKLESTFAVK
>NZ_CP044298.1|WP_001221319.1|2910344_2911547_+|exonuclease-subunit-SbcD
MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDYYQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLVRRSREQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLHTLAGEHEA
>NZ_CP044298.1|WP_000113933.1|2909465_2910155_-|phosphate-response-regulator-transcription-factor-PhoB
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF
>NZ_CP044298.1|WP_000893623.1|2908112_2909408_-|phosphate-regulon-sensor-histidine-kinase-PhoR
MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEMMNEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIPERLIAKNSD
>NZ_CP044298.1|WP_000149639.1|2906386_2907706_-|branched-chain-amino-acid-transporter-carrier-protein-BrnQ
MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAFSDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH
>NZ_CP044298.1|WP_001295329.1|2904937_2906311_-|proline-specific-permease-ProY
MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHDRQLAENQ
>NZ_CP044298.1|WP_001310597.1|2902963_2904781_-|maltodextrin-glucosidase
MMLNAWHLPVPPFVKQSKDQLLITLWLTGEDPPQRIMLRTEHDNEEMSVPMHKQRSQPQPGVTAWRAAIDLSSGQPRRRYSFKLLWHDRQRWFTPQGFSRMPPARLEQFAVDVPDIGPQWAADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPVFKAPSVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHSGDSHAWFDRHNRGTGGACHNPESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGWRLDVVHMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWLQADVEDAAMNYRGFTFPLWGFLANTDISYDPQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEVGLDGKNDPFCRKPFPWQVEKQDTALFALYQRMIALRKKSQALRHGGCQVLYAEDNVVVFVRVLNQQRVLVAINRGEACEVVLPASPFLNAVQWQCKEGHGQLTDGILALPAISATVWMN
>NZ_CP044298.1|WP_001009885.1|2902377_2902959_+|ACP-phosphodiesterase
MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVREAREWFRSETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFVCYAREQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALRDSWYDLDAHYDALETRFWQFYPRMMAQASRKAL
>NZ_CP044298.1|WP_001266503.1|2901214_2902285_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MRVTDFSFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFTDLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPKPGAELLLGDDESINATMTARHGALFEVEFNDERSVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVDTIEDHIMHSEYAEVPQDVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPFFDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRFFSYGDAMFITYNPQAINERVGE
>NZ_CP044298.1|WP_000667319.1|2900031_2901159_-|tRNA-guanosine(34)-transglycosylase-Tgt
MKFELDTTDGRARRGRLVFDRGVVETPCFMPVGTYGTVKGMTPEEVEATGAQIILGNTFHLWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIRKITEQGVHFRNPINGDPIFLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSMEMSLRWAKRSRERFDSLGNKNALFGIIQGSVYEDLRDISVKGLVDIGFDGYAVGGLAVGEPKADMHRILEHVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGHLFVTDGVVKIRNAKYKSDTGPLDPECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHNLRYYQRLMAGLRKAIEEGKLESFVTDFYQRQGREVPPLNVD
>NZ_CP044298.1|WP_001219309.1|2916243_2917152_-|fructokinase
MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQATGQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRLANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGEWGHNPLPWMDEDELRYREEVPCYCGKQGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGMSNVDRLYQTVGQLIKQFVFGGECETPVRKAKHGDSSGVRGAAWLWPQE
>NZ_CP044298.1|WP_001298537.1|2917276_2918188_+|recombination-associated-protein-RdgC
MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQR
>NZ_CP044298.1|WP_120795376.1|2918265_2918349_-|protein-YkiD
MTQRPWSKLQRKTHNIAALKIIARRSE
>NZ_CP044298.1|WP_000941942.1|2918834_2919119_-|pyrimidine/purine-nucleoside-phosphorylase
MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL
>NZ_CP044298.1|WP_001276420.1|2919190_2919868_-|AroM-family-protein
MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREEVMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANISSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSLGNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIARLAAELLV
>NZ_CP044298.1|WP_001142439.1|2920123_2920315_-|protein-YaiA
MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEHPTAQEAMDAKKRYEDPDKE
>NZ_CP044298.1|WP_000193393.1|2920364_2920889_-|shikimate-kinase-AroL
MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMTVAEIVEREEWAGFRARETAALEAVTAPSTVIATGGGIILTEFNRHFMQNNGIVVYLCAPVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQVISEIRSALAQTINC
>NZ_CP044298.1|WP_000158159.1|2921071_2921530_-|YaiI/YqxD-family-protein
MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRFIRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATIRERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG
>NZ_CP044298.1|WP_001295331.1|2921649_2922459_+|pyrroline-5-carboxylate-reductase
MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAALHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS
>NZ_CP044298.1|WP_000484048.1|2922475_2923591_-|diguanylate-cyclase-AdrA
MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNLKTDAVLAGMWVGVMGVNVLPSTAMLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRLPNTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA

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Crispr_ID: NZ_CP044298_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044298_8

3280855-3280990

Orphan

Consensus_repeat	Method
TGAATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP044298_8

>merge|NZ_CP044298|8|3280855-3280990|PILER-CR
TTAATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTCCTCACCAATATTGAAAACACGGCGTAGCAAAAAGAAATTTTCAATATTGTTTTATGGATCACCAATATTGAAAG

>NZ_CP044298|8|2|3280855-3280990|PILER-CR
TTAATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTCC
TCACCAATATTGAAAACACG	GCGTAGCAAAAAGAAATTTTCAATATTGTTTTATGGA
TCACCAATATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044298.1\|WP_001091499.1\|3279040_3279982_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|235120
NZ_CP044298.1\|WP_000624375.1\|3272867_3273347_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP044298.1\|WP_001183198.1\|3276031_3277363_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP044298.1\|WP_001287715.1\|3277703_3278990_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
NZ_CP044298.1\|WP_000203741.1\|3277419_3277707_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
NZ_CP044298.1\|WP_001126340.1\|3289154_3292373_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP044298.1\|WP_000610901.1\|3271563_3271941_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP044298.1\|WP_000349953.1\|3284045_3285263_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
NZ_CP044298.1\|WP_000333125.1\|3288498_3288894_-\|carnitine-metabolism-transcriptional-regulator-CaiF	unknown	unknown	gnl\|CDD\|183154
NZ_CP044298.1\|WP_000787103.1\|3281240_3282755_+\|L-carnitine/gamma-butyrobetaine-antiporter	unknown	unknown	gnl\|CDD\|179568
NZ_CP044298.1\|WP_001352306.1\|3292390_3293539_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP044298.1\|WP_000122890.1\|3287789_3288380_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
NZ_CP044298.1\|WP_024257861.1\|3285336_3286890_+\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
NZ_CP044298.1\|WP_157705071.1\|3271947_3272790_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP044298.1\|WP_000377098.1\|3273538_3275401_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
NZ_CP044298.1\|WP_000692204.1\|3279996_3280767_-\|electron-transfer-flavoprotein-FixA	unknown	unknown	gnl\|CDD\|179569
NZ_CP044298.1\|WP_000543594.1\|3293994_3294816_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP044298.1\|WP_000347117.1\|3282785_3283928_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
NZ_CP044298.1\|WP_001352305.1\|3286998_3287784_+\|crotonobetainyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|179599
NZ_CP044298.1\|WP_000600725.1\|3275393_3275924_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	unknown	unknown	gnl\|CDD\|234852

Protein	Function_ID	Function_description	E-value
NZ_CP044298.1\|WP_001091499.1\|3279040_3279982_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
NZ_CP044298.1\|WP_000624375.1\|3272867_3273347_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.07206e-127
NZ_CP044298.1\|WP_001183198.1\|3276031_3277363_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.4298e-59
NZ_CP044298.1\|WP_001287715.1\|3277703_3278990_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
NZ_CP044298.1\|WP_000203741.1\|3277419_3277707_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.84173e-69
NZ_CP044298.1\|WP_001126340.1\|3289154_3292373_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP044298.1\|WP_000610901.1\|3271563_3271941_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
NZ_CP044298.1\|WP_000349953.1\|3284045_3285263_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
NZ_CP044298.1\|WP_000333125.1\|3288498_3288894_-\|carnitine-metabolism-transcriptional-regulator-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	1.42176e-74
NZ_CP044298.1\|WP_000787103.1\|3281240_3282755_+\|L-carnitine/gamma-butyrobetaine-antiporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
NZ_CP044298.1\|WP_001352306.1\|3292390_3293539_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP044298.1\|WP_000122890.1\|3287789_3288380_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	4.44962e-142
NZ_CP044298.1\|WP_024257861.1\|3285336_3286890_+\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
NZ_CP044298.1\|WP_157705071.1\|3271947_3272790_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP044298.1\|WP_000377098.1\|3273538_3275401_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP044298.1\|WP_000692204.1\|3279996_3280767_-\|electron-transfer-flavoprotein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	6.8619e-170
NZ_CP044298.1\|WP_000543594.1\|3293994_3294816_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.59527e-141
NZ_CP044298.1\|WP_000347117.1\|3282785_3283928_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
NZ_CP044298.1\|WP_001352305.1\|3286998_3287784_+\|crotonobetainyl-CoA-hydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	1.51953e-178
NZ_CP044298.1\|WP_000600725.1\|3275393_3275924_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	2.99389e-133

>NZ_CP044298.1|WP_000692204.1|3279996_3280767_-|electron-transfer-flavoprotein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>NZ_CP044298.1|WP_001091499.1|3279040_3279982_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLNGKPDDRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>NZ_CP044298.1|WP_001287715.1|3277703_3278990_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>NZ_CP044298.1|WP_000203741.1|3277419_3277707_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>NZ_CP044298.1|WP_001183198.1|3276031_3277363_-|MFS-transporter
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG
>NZ_CP044298.1|WP_000600725.1|3275393_3275924_-|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF
MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>NZ_CP044298.1|WP_000377098.1|3273538_3275401_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGCGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLATSSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>NZ_CP044298.1|WP_000624375.1|3272867_3273347_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP044298.1|WP_157705071.1|3271947_3272790_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISCNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGEAAAS
>NZ_CP044298.1|WP_000610901.1|3271563_3271941_+|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH
>NZ_CP044298.1|WP_000787103.1|3281240_3282755_+|L-carnitine/gamma-butyrobetaine-antiporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>NZ_CP044298.1|WP_000347117.1|3282785_3283928_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>NZ_CP044298.1|WP_000349953.1|3284045_3285263_+|L-carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMTKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>NZ_CP044298.1|WP_024257861.1|3285336_3286890_+|crotonobetaine/carnitine-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQIQQEDASQLRHICLTDMALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSEQEKDAFCERFSVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>NZ_CP044298.1|WP_001352305.1|3286998_3287784_+|crotonobetainyl-CoA-hydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVNQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>NZ_CP044298.1|WP_000122890.1|3287789_3288380_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCNTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFIKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR
>NZ_CP044298.1|WP_000333125.1|3288498_3288894_-|carnitine-metabolism-transcriptional-regulator-CaiF
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>NZ_CP044298.1|WP_001126340.1|3289154_3292373_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECESNPSDRDKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKTLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>NZ_CP044298.1|WP_001352306.1|3292390_3293539_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEPYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTIKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIALIEQYRKTAK
>NZ_CP044298.1|WP_000543594.1|3293994_3294816_-|4-hydroxy-tetrahydrodipicolinate-reductase
MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGSIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNNL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP044298_4	4.1\|2240323\|40\|NZ_CP044298\|CRISPRCasFinder	2240323-2240362	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
NZ_CP044298_8	8.1\|3280875\|43\|NZ_CP044298\|PILER-CR	3280875-3280917	43	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141084-141126	0	1.0
NZ_CP044298_3	3.1\|1574999\|38\|NZ_CP044298\|CRISPRCasFinder	1574999-1575036	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP044298_1	1.8\|456773\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456773-456804	32	NC_021229	Arthrobacter nicotinovorans pAO1 megaplasmid sequence, strain ATCC 49919	65474-65505	5	0.844
NZ_CP044298_1	1.1\|456344\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456344-456375	32	NZ_CP009293	Novosphingobium pentaromativorans US6-1 plasmid pLA4, complete sequence	152196-152227	6	0.812
NZ_CP044298_1	1.2\|456405\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456405-456436	32	KY883647	Vibrio phage JSF33, complete genome	9760-9791	6	0.812
NZ_CP044298_1	1.8\|456773\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456773-456804	32	NZ_CP017422	Arthrobacter sp. ZXY-2 plasmid pZXY21, complete sequence	208287-208318	6	0.812
NZ_CP044298_1	1.9\|456834\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456834-456865	32	MK416018	Klebsiella phage ST147-VIM1phi7.1, complete genome	24790-24821	7	0.781
NZ_CP044298_1	1.10\|456895\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456895-456926	32	MF351863	Synechococcus phage Bellamy, complete genome	123998-124029	7	0.781
NZ_CP044298_1	1.1\|456344\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456344-456375	32	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	750410-750441	8	0.75
NZ_CP044298_1	1.2\|456405\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456405-456436	32	MN855762	Bacteriophage sp. isolate 505, complete genome	4840-4871	8	0.75
NZ_CP044298_1	1.2\|456405\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456405-456436	32	NC_020548	Azoarcus sp. KH32C plasmid pAZKH, complete sequence	224460-224491	8	0.75
NZ_CP044298_1	1.5\|456589\|33\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456589-456621	33	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	375744-375776	8	0.758
NZ_CP044298_1	1.8\|456773\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456773-456804	32	MK113951	Phage 5P_3, complete genome	11967-11998	8	0.75
NZ_CP044298_1	1.8\|456773\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456773-456804	32	AP017924	Ralstonia phage RP12 DNA, complete genome	11643-11674	8	0.75
NZ_CP044298_1	1.14\|457139\|32\|NZ_CP044298\|CRISPRCasFinder,CRT	457139-457170	32	NZ_AP018516	Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence	48296-48327	8	0.75
NZ_CP044298_1	1.1\|456344\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456344-456375	32	MN234174	Mycobacterium phage Efra2, complete genome	35614-35645	9	0.719
NZ_CP044298_1	1.1\|456344\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456344-456375	32	MN234165	Mycobacterium phage Yunkel11, complete genome	35570-35601	9	0.719
NZ_CP044298_1	1.1\|456344\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456344-456375	32	MN234201	Mycobacterium phage Guanica15, complete genome	35571-35602	9	0.719
NZ_CP044298_1	1.2\|456405\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456405-456436	32	NZ_CP015585	Roseomonas gilardii strain U14-5 plasmid 1, complete sequence	104261-104292	9	0.719
NZ_CP044298_1	1.2\|456405\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456405-456436	32	NZ_CP054618	Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence	142898-142929	9	0.719
NZ_CP044298_1	1.5\|456589\|33\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456589-456621	33	NZ_CP010957	Sphingobium sp. YBL2 plasmid 3pYBL2-3, complete sequence	26182-26214	9	0.727
NZ_CP044298_1	1.9\|456834\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456834-456865	32	NZ_CP050104	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence	1143591-1143622	9	0.719
NZ_CP044298_1	1.9\|456834\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456834-456865	32	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	891493-891524	9	0.719
NZ_CP044298_1	1.9\|456834\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456834-456865	32	NZ_CP050109	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence	1143594-1143625	9	0.719
NZ_CP044298_1	1.9\|456834\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456834-456865	32	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	315030-315061	9	0.719
NZ_CP044298_1	1.9\|456834\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456834-456865	32	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	1123532-1123563	9	0.719
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052797	Salmonella enterica subsp. enterica serovar Infantis strain CVM N18S2039 plasmid pN18S2039, complete sequence	45808-45839	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052795	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0125 plasmid pN19S0125, complete sequence	282589-282620	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	NZ_CP047882	Salmonella enterica subsp. enterica serovar Infantis strain 119944 plasmid pESI, complete sequence	94965-94996	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052804	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S973 plasmid pN17S0973, complete sequence	304288-304319	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP038508	Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219, complete sequence	112376-112407	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052802	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S976 plasmid pN17S0976, complete sequence	315682-315713	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052788	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0611 plasmid pN19S0611, complete sequence	203378-203409	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052840	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S024 plasmid pN16S024, complete sequence	127648-127679	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052786	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0641 plasmid pN19S0641, complete sequence	215302-215333	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052838	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S097 plasmid pN16S097, complete sequence	214483-214514	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	NZ_CP028316	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence	108893-108924	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP051676	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1234 plasmid pN16S1234, complete sequence	83669-83700	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052783	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0679 plasmid pN19S0679-1, complete sequence	194119-194150	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052836	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S103 plasmid pN16S103, complete sequence	18410-18441	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	NZ_CP022063	Salmonella enterica strain FDAARGOS_312 plasmid unnamed3, complete sequence	64615-64646	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052781	Salmonella enterica strain CVM N19S0949 plasmid pN19S0949, complete sequence	169480-169511	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052834	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S041 plasmid pN17S0041, complete sequence	6457-6488	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052793	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0388 plasmid pN19S0388, complete sequence	25758-25789	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052779	Salmonella enterica strain 19TN07GT06K-S plasmid pN19S1233, complete sequence	140403-140434	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052832	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1040 plasmid pN17S1040, complete sequence	160727-160758	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	NZ_CP031362	Salmonella enterica subsp. enterica serovar Heidelberg strain 5 plasmid p3, complete sequence	140152-140183	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052830	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1105 plasmid pN17S1105, complete sequence	193709-193740	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052828	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1126 plasmid pN17S1126, complete sequence	126974-127005	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052826	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1245 plasmid pN17S0637, complete sequence	110984-111015	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	NZ_CP016409	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 plasmid pFSIS1502916, complete sequence	94916-94947	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052824	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1265 plasmid pN17S1265, complete sequence	91497-91528	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052822	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1349 plasmid pN17S1349, complete sequence	110984-111015	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	NZ_CP016407	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169 plasmid pFSIS1502169, complete sequence	94916-94947	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052820	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1442 plasmid pN17S1442, complete sequence	94916-94947	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	NZ_CP016413	Salmonella enterica subsp. enterica serovar Infantis strain CVM44454 plasmid pCVM44454, complete sequence	94916-94947	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	NZ_CP016411	Salmonella enterica subsp. enterica serovar Infantis strain N55391 plasmid pN55391, complete sequence	94916-94947	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052816	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1598 plasmid pN17S1598	165317-165348	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052814	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S349 plasmid pN17S0349, complete sequence	99109-99140	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	NZ_CP022662	Salmonella enterica subsp. enterica strain RM11065 plasmid pRM11065-2, complete sequence	54379-54410	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052812	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S376 plasmid pN17S0376, complete sequence	1671-1702	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052810	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S535 plasmid pN17S0535, complete sequence	212751-212782	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052808	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S637 plasmid pN17S0637, complete sequence	306376-306407	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052806	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S816 plasmid pN17S0816, complete sequence	164579-164610	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052791	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0552 plasmid pN17S0637, complete sequence	168074-168105	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052818	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1509 plasmid pN17S1509, complete sequence	190524-190555	10	0.688
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	CP052799	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S990 plasmid pN17S0990-1, complete sequence	6457-6488	10	0.688
NZ_CP044298_1	1.5\|456589\|33\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456589-456621	33	CP046443	Pseudomonas coronafaciens pv. coronafaciens strain B19001 plasmid unnamed2, complete sequence	31933-31965	10	0.697
NZ_CP044298_1	1.5\|456589\|33\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456589-456621	33	NZ_LT963392	Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP1, complete sequence	103013-103045	10	0.697
NZ_CP044298_1	1.5\|456589\|33\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456589-456621	33	NZ_LT963392	Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP1, complete sequence	110510-110542	10	0.697
NZ_CP044298_1	1.5\|456589\|33\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456589-456621	33	NZ_CP034079	Pseudomonas syringae pv. pisi str. PP1 plasmid pPP1-1, complete sequence	48454-48486	10	0.697
NZ_CP044298_1	1.5\|456589\|33\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456589-456621	33	NZ_CP034080	Pseudomonas syringae pv. pisi str. PP1 plasmid pPP1-2, complete sequence	39480-39512	10	0.697
NZ_CP044298_1	1.5\|456589\|33\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456589-456621	33	NC_005918	Pseudomonas syringae pv. maculicola strain ES4326 plasmid pPMA4326A, complete sequence	31117-31149	10	0.697
NZ_CP044298_1	1.5\|456589\|33\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456589-456621	33	NZ_CP047262	Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326A, complete sequence	30966-30998	10	0.697
NZ_CP044298_1	1.5\|456589\|33\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456589-456621	33	NZ_CP026560	Pseudomonas amygdali pv. morsprunorum strain R15244 plasmid p3_tig5, complete sequence	19118-19150	10	0.697
NZ_CP044298_1	1.5\|456589\|33\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456589-456621	33	NZ_LT963406	Pseudomonas syringae pv. avii isolate CFBP3846 plasmid PP4, complete sequence	54820-54852	10	0.697
NZ_CP044298_1	1.5\|456589\|33\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456589-456621	33	LT985193	Pseudomonas syringae strain CFBP 2116 genome assembly, plasmid: PP2	32077-32109	10	0.697
NZ_CP044298_1	1.5\|456589\|33\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456589-456621	33	NZ_LT963393	Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP2, complete sequence	50597-50629	10	0.697
NZ_CP044298_1	1.5\|456589\|33\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456589-456621	33	NZ_LT985210	Pseudomonas syringae pv. cerasicola strain CFBP 6110 plasmid PP1, complete sequence	105842-105874	10	0.697
NZ_CP044298_1	1.5\|456589\|33\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456589-456621	33	NZ_LT985211	Pseudomonas syringae pv. cerasicola strain CFBP 6110 plasmid PP2, complete sequence	84272-84304	10	0.697
NZ_CP044298_1	1.7\|456712\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456712-456743	32	NZ_CP028970	Aminobacter sp. MSH1 plasmid pUSP2, complete sequence	156123-156154	10	0.688
NZ_CP044298_1	1.7\|456712\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456712-456743	32	NZ_CP053984	Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence	21888-21919	10	0.688
NZ_CP044298_1	1.7\|456712\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456712-456743	32	NC_010935	Comamonas testosteroni CNB-1 plasmid pCNB, complete sequence	28766-28797	10	0.688
NZ_CP044298_1	1.7\|456712\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456712-456743	32	JX469826	Uncultured bacterium plasmid pB12, complete sequence	11283-11314	10	0.688
NZ_CP044298_1	1.7\|456712\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456712-456743	32	JN106171	Uncultured bacterium plasmid pAKD26, complete sequence	11289-11320	10	0.688
NZ_CP044298_1	1.7\|456712\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456712-456743	32	NC_016968	Comamonas testosteroni plasmid pTB30, complete sequence	11287-11318	10	0.688
NZ_CP044298_1	1.7\|456712\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456712-456743	32	NC_016978	Comamonas testosteroni plasmid pI2, complete sequence	11272-11303	10	0.688
NZ_CP044298_1	1.7\|456712\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456712-456743	32	NZ_CP017760	Cupriavidus necator strain NH9 plasmid pENH91, complete sequence	67078-67109	10	0.688
NZ_CP044298_1	1.7\|456712\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456712-456743	32	NZ_CP053554	Diaphorobacter sp. JS3050 plasmid pDCNB, complete sequence	4235-4266	10	0.688
NZ_CP044298_1	1.7\|456712\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456712-456743	32	NC_019263	Delftia acidovorans plasmid pLME1, complete sequence	11288-11319	10	0.688
NZ_CP044298_1	1.7\|456712\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456712-456743	32	NC_019264	Delftia acidovorans plasmid pNB8c, complete sequence	11288-11319	10	0.688
NZ_CP044298_1	1.7\|456712\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456712-456743	32	NC_019283	Delftia acidovorans plasmid pC1-1, complete sequence	11288-11319	10	0.688
NZ_CP044298_1	1.7\|456712\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456712-456743	32	NC_006830	Achromobacter xylosoxidans A8 plasmid pA81, complete sequence	11350-11381	10	0.688
NZ_CP044298_1	1.8\|456773\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456773-456804	32	NC_002580	Propionibacterium freudenreichii plasmid p545, complete sequence	2898-2929	10	0.688
NZ_CP044298_7	7.1\|2916119\|59\|NZ_CP044298\|CRISPRCasFinder	2916119-2916177	59	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	97-155	10	0.831
NZ_CP044298_1	1.3\|456466\|32\|NZ_CP044298\|PILER-CR,CRISPRCasFinder,CRT	456466-456497	32	NZ_CP026128	Acinetobacter baumannii strain ABNIH28 plasmid pABA-1fe1, complete sequence	49165-49196	11	0.656
NZ_CP044298_7	7.1\|2916119\|59\|NZ_CP044298\|CRISPRCasFinder	2916119-2916177	59	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40375-40433	11	0.814

1. spacer 4.1|2240323|40|NZ_CP044298|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 8.1|3280875|43|NZ_CP044298|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttcc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttcc	Protospacer
*******************************************

3. spacer 3.1|1574999|38|NZ_CP044298|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

4. spacer 1.8|456773|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NC_021229 (Arthrobacter nicotinovorans pAO1 megaplasmid sequence, strain ATCC 49919) position: , mismatch: 5, identity: 0.844

-ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
tccgctcg-gcaggctgcaacgcaagccgccca	Protospacer
 *.*** * ** ******** ************

5. spacer 1.1|456344|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009293 (Novosphingobium pentaromativorans US6-1 plasmid pLA4, complete sequence) position: , mismatch: 6, identity: 0.812

ctttcgcagacgcgcggcgatacgctcacgca	CRISPR spacer
ctcacgcagacgcgcggcgacacgctcattct	Protospacer
**. ****************.*******. *

6. spacer 1.2|456405|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to KY883647 (Vibrio phage JSF33, complete genome) position: , mismatch: 6, identity: 0.812

cagccgaagccaaaggtgatgccgaacacgct	CRISPR spacer
aagccaaagccaaagctgatgccgaaactgct	Protospacer
 ****.********* **********  .***

7. spacer 1.8|456773|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017422 (Arthrobacter sp. ZXY-2 plasmid pZXY21, complete sequence) position: , mismatch: 6, identity: 0.812

-ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
tccgctcg-gcaggctgcaacgcaagccgcccc	Protospacer
 *.*** * ** ******** ***********

8. spacer 1.9|456834|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to MK416018 (Klebsiella phage ST147-VIM1phi7.1, complete genome) position: , mismatch: 7, identity: 0.781

cccaccagcgcgttttttgccggggccatagt	CRISPR spacer
cccatcagcgcgttttttggcggtgtgatgga	Protospacer
****.************** *** *. **.*

9. spacer 1.10|456895|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to MF351863 (Synechococcus phage Bellamy, complete genome) position: , mismatch: 7, identity: 0.781

ttgaactcaccacgattgttaatatggacgat	CRISPR spacer
aaggtatcaccacgattgttgatatgggcgat	Protospacer
  *.  **************.******.****

10. spacer 1.1|456344|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.75

-ctttcgcagacgcgcggcgatacgctcacgca	CRISPR spacer
ggcttcacgaa-gcgcggcgatacgctctcgct	Protospacer
  .***.*..* **************** ***

11. spacer 1.2|456405|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to MN855762 (Bacteriophage sp. isolate 505, complete genome) position: , mismatch: 8, identity: 0.75

cagccgaagccaaaggtgatgccgaacacgct	CRISPR spacer
aagccgaagccaaaggtgatttcgagctggtc	Protospacer
 ******************* .***.*  *..

12. spacer 1.2|456405|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 8, identity: 0.75

cagccgaagccaaaggtgatgc---cgaacacgct	CRISPR spacer
tagcagaagccgaaggtgatgccggcgagcag---	Protospacer
.*** ******.**********   ***.**

13. spacer 1.5|456589|33|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 8, identity: 0.758

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ctgatcgcgcattacctgcgcgtcgccgacgcg	Protospacer
* .*********  ************** *

14. spacer 1.8|456773|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to MK113951 (Phage 5P_3, complete genome) position: , mismatch: 8, identity: 0.75

ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
gagcatcggctggctgcaaggcaagctgcccc	Protospacer
  **   .******************.****

15. spacer 1.8|456773|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to AP017924 (Ralstonia phage RP12 DNA, complete genome) position: , mismatch: 8, identity: 0.75

ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
gcggaagcgctggctgcacggcaagcggccca	Protospacer
 .*  .* ********** ******* *****

16. spacer 1.14|457139|32|NZ_CP044298|CRISPRCasFinder,CRT matches to NZ_AP018516 (Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence) position: , mismatch: 8, identity: 0.75

gcaacgacggtgagatttcacgcctgacgctg	CRISPR spacer
tcaacgacggtaagatgtcacgcctaaagaat	Protospacer
 **********.**** ********.* *

17. spacer 1.1|456344|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to MN234174 (Mycobacterium phage Efra2, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgcagacgcgcggcgatacgctcacgca	CRISPR spacer
gatcaccagacgcgcggcgtcacgctcacggc	Protospacer
  *.  ************* .*********

18. spacer 1.1|456344|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to MN234165 (Mycobacterium phage Yunkel11, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgcagacgcgcggcgatacgctcacgca	CRISPR spacer
gatcaccagacgcgcggcgtcacgctcacggc	Protospacer
  *.  ************* .*********

19. spacer 1.1|456344|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to MN234201 (Mycobacterium phage Guanica15, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgcagacgcgcggcgatacgctcacgca	CRISPR spacer
gatcaccagacgcgcggcgtcacgctcacggc	Protospacer
  *.  ************* .*********

20. spacer 1.2|456405|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015585 (Roseomonas gilardii strain U14-5 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

cagccgaagccaaaggtgatgccgaacacgct	CRISPR spacer
cagctggagccaaaggtgatgcccgtgcggat	Protospacer
****.*.**************** .    * *

21. spacer 1.2|456405|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054618 (Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

cagccgaagccaaaggtgatgccgaacacgct	CRISPR spacer
gcgccgaaggcaaaggtgttgccgaggccgag	Protospacer
  ******* ******** ******.  **

22. spacer 1.5|456589|33|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010957 (Sphingobium sp. YBL2 plasmid 3pYBL2-3, complete sequence) position: , mismatch: 9, identity: 0.727

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ctcgacccgcataccttgcgtgtcgccgcctcg	Protospacer
*  . * ********.****.**********

23. spacer 1.9|456834|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 9, identity: 0.719

cccaccagcgcgttttttgccggggccatagt	CRISPR spacer
gccacccgcgctttttttgccgggccggatat	Protospacer
 ***** **** ************ * .  .*

24. spacer 1.9|456834|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 9, identity: 0.719

cccaccagcgcgttttttgccggggccatagt	CRISPR spacer
gccacccgcgctttttttgccgggccggatat	Protospacer
 ***** **** ************ * .  .*

25. spacer 1.9|456834|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 9, identity: 0.719

cccaccagcgcgttttttgccggggccatagt	CRISPR spacer
gccacccgcgctttttttgccgggccggatat	Protospacer
 ***** **** ************ * .  .*

26. spacer 1.9|456834|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 9, identity: 0.719

cccaccagcgcgttttttgccggggccatagt	CRISPR spacer
gccacccgcgctttttttgccgggccggatat	Protospacer
 ***** **** ************ * .  .*

27. spacer 1.9|456834|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 9, identity: 0.719

cccaccagcgcgttttttgccggggccatagt	CRISPR spacer
gccacccgcgctttttttgccgggccggatat	Protospacer
 ***** **** ************ * .  .*

28. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052797 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N18S2039 plasmid pN18S2039, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

29. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052795 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0125 plasmid pN19S0125, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

30. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047882 (Salmonella enterica subsp. enterica serovar Infantis strain 119944 plasmid pESI, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

31. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052804 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S973 plasmid pN17S0973, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

32. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP038508 (Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

33. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052802 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S976 plasmid pN17S0976, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

34. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052788 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0611 plasmid pN19S0611, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

35. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052840 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S024 plasmid pN16S024, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

36. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052786 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0641 plasmid pN19S0641, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

37. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052838 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S097 plasmid pN16S097, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

38. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028316 (Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

39. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP051676 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1234 plasmid pN16S1234, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

40. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052783 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0679 plasmid pN19S0679-1, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

41. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052836 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S103 plasmid pN16S103, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

42. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022063 (Salmonella enterica strain FDAARGOS_312 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

43. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052781 (Salmonella enterica strain CVM N19S0949 plasmid pN19S0949, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

44. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052834 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S041 plasmid pN17S0041, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

45. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052793 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0388 plasmid pN19S0388, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

46. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052779 (Salmonella enterica strain 19TN07GT06K-S plasmid pN19S1233, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

47. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052832 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1040 plasmid pN17S1040, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

48. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031362 (Salmonella enterica subsp. enterica serovar Heidelberg strain 5 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

49. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052830 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1105 plasmid pN17S1105, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

50. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052828 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1126 plasmid pN17S1126, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

51. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052826 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1245 plasmid pN17S0637, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

52. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016409 (Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 plasmid pFSIS1502916, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

53. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052824 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1265 plasmid pN17S1265, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

54. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052822 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1349 plasmid pN17S1349, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

55. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016407 (Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169 plasmid pFSIS1502169, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

56. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052820 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1442 plasmid pN17S1442, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

57. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016413 (Salmonella enterica subsp. enterica serovar Infantis strain CVM44454 plasmid pCVM44454, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

58. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016411 (Salmonella enterica subsp. enterica serovar Infantis strain N55391 plasmid pN55391, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

59. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052816 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1598 plasmid pN17S1598) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

60. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052814 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S349 plasmid pN17S0349, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

61. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022662 (Salmonella enterica subsp. enterica strain RM11065 plasmid pRM11065-2, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

62. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052812 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S376 plasmid pN17S0376, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

63. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052810 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S535 plasmid pN17S0535, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

64. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052808 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S637 plasmid pN17S0637, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

65. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052806 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S816 plasmid pN17S0816, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

66. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052791 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0552 plasmid pN17S0637, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

67. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052818 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1509 plasmid pN17S1509, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

68. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP052799 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S990 plasmid pN17S0990-1, complete sequence) position: , mismatch: 10, identity: 0.688

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tactccctgtcggttgtgtttgatagcgcctc	Protospacer
 .***************. ******..*..

69. spacer 1.5|456589|33|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to CP046443 (Pseudomonas coronafaciens pv. coronafaciens strain B19001 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

70. spacer 1.5|456589|33|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT963392 (Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP1, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

71. spacer 1.5|456589|33|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT963392 (Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP1, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

72. spacer 1.5|456589|33|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034079 (Pseudomonas syringae pv. pisi str. PP1 plasmid pPP1-1, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

73. spacer 1.5|456589|33|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034080 (Pseudomonas syringae pv. pisi str. PP1 plasmid pPP1-2, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

74. spacer 1.5|456589|33|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NC_005918 (Pseudomonas syringae pv. maculicola strain ES4326 plasmid pPMA4326A, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

75. spacer 1.5|456589|33|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047262 (Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326A, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

76. spacer 1.5|456589|33|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026560 (Pseudomonas amygdali pv. morsprunorum strain R15244 plasmid p3_tig5, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

77. spacer 1.5|456589|33|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT963406 (Pseudomonas syringae pv. avii isolate CFBP3846 plasmid PP4, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

78. spacer 1.5|456589|33|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to LT985193 (Pseudomonas syringae strain CFBP 2116 genome assembly, plasmid: PP2) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

79. spacer 1.5|456589|33|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT963393 (Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP2, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

80. spacer 1.5|456589|33|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT985210 (Pseudomonas syringae pv. cerasicola strain CFBP 6110 plasmid PP1, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

81. spacer 1.5|456589|33|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT985211 (Pseudomonas syringae pv. cerasicola strain CFBP 6110 plasmid PP2, complete sequence) position: , mismatch: 10, identity: 0.697

cgaatcgcgcataccctgcgcgtcgccgcctgc	CRISPR spacer
ttcgctgcgcatctcctgcgcgtcgccgccggt	Protospacer
.  ...****** .**************** *.

82. spacer 1.7|456712|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028970 (Aminobacter sp. MSH1 plasmid pUSP2, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
acgtcaccccggaagcgattgccagcacacgc	Protospacer
.  ********.*** **********  .* .

83. spacer 1.7|456712|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053984 (Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

84. spacer 1.7|456712|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NC_010935 (Comamonas testosteroni CNB-1 plasmid pCNB, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

85. spacer 1.7|456712|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to JX469826 (Uncultured bacterium plasmid pB12, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

86. spacer 1.7|456712|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to JN106171 (Uncultured bacterium plasmid pAKD26, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

87. spacer 1.7|456712|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NC_016968 (Comamonas testosteroni plasmid pTB30, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

88. spacer 1.7|456712|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NC_016978 (Comamonas testosteroni plasmid pI2, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

89. spacer 1.7|456712|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017760 (Cupriavidus necator strain NH9 plasmid pENH91, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

90. spacer 1.7|456712|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053554 (Diaphorobacter sp. JS3050 plasmid pDCNB, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

91. spacer 1.7|456712|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NC_019263 (Delftia acidovorans plasmid pLME1, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

92. spacer 1.7|456712|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NC_019264 (Delftia acidovorans plasmid pNB8c, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

93. spacer 1.7|456712|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NC_019283 (Delftia acidovorans plasmid pC1-1, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

94. spacer 1.7|456712|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NC_006830 (Achromobacter xylosoxidans A8 plasmid pA81, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

95. spacer 1.8|456773|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NC_002580 (Propionibacterium freudenreichii plasmid p545, complete sequence) position: , mismatch: 10, identity: 0.688

ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
ccctgagagctggctgccacgcaagccgctgg	Protospacer
*. . .*********** * *********. .

96. spacer 7.1|2916119|59|NZ_CP044298|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 10, identity: 0.831

-cggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcacc	CRISPR spacer
tcagtgcac-gatcgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctc	Protospacer
 *.* ****  **.**************************** ************   .*

97. spacer 1.3|456466|32|NZ_CP044298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026128 (Acinetobacter baumannii strain ABNIH28 plasmid pABA-1fe1, complete sequence) position: , mismatch: 11, identity: 0.656

ggctccctgtcggttgtaattgataatgttga	CRISPR spacer
tttgaactgtcggttgtaattggcaatgtatc	Protospacer
  .   ****************..*****

98. spacer 7.1|2916119|59|NZ_CP044298|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.814

cggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcacc-	CRISPR spacer
ggtacggctttttgccggatgcggcgtaaacgccttatccggcctacggtt-tggtgcga	Protospacer
 * *  .*** ****************.*********************** ***..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1073995 : 1083436

Enterobacteria_phage(85.71%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569315.1\|1073995_1074922_+	glycine betaine ABC transporter ATP binding protein YehX	F2Y1V5	Organic_Lake_phycodnavirus	2.0e-08	26.8
WP_000783120.1\|1074926_1075658_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1075638_1075746_-	protein YohO	NA	NA	NA	NA
WP_089580340.1\|1075805_1076537_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.4e-110	99.0
WP_001295431.1\|1076758_1078444_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|1078440_1079160_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950409.1\|1079206_1079677_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	5.2e-82	100.0
WP_001295429.1\|1079716_1080178_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001375261.1\|1080302_1082303_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
WP_001333512.1\|1082299_1083436_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.9e-162	97.7

DBSCAN-SWA_2

2501518 : 2543862

Enterobacteria_phage(61.67%)

portal,terminase,capsid,integrase,protease,tail,lysis,head

attL 2522691:2522706|attR 2545570:2545585

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001491017.1\|2501518_2502103_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	5.4e-105	95.4
WP_072133999.1\|2502102_2505465_-	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	8.1e-12	36.4
WP_001230375.1\|2505529_2506129_-	Ail/Lom family protein	A0A291AWV3	Escherichia_phage	5.7e-110	98.5
WP_157705044.1\|2506198_2509612_-	DUF1983 domain-containing protein	K7PKJ2	Enterobacteria_phage	0.0e+00	97.7
WP_000090944.1\|2509672_2510281_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	7.6e-102	94.6
WP_096943825.1\|2510217_2510961_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	3.0e-145	96.3
WP_001152634.1\|2510966_2511665_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.1e-132	99.1
WP_000847379.1\|2511664_2511994_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
WP_134240115.1\|2511990_2514552_-\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	92.6
WP_000459457.1\|2514544_2514979_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_001535872.1\|2514960_2515383_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	7.7e-69	95.0
WP_044502411.1\|2515398_2516139_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	2.5e-131	98.8
WP_000683129.1\|2516146_2516542_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	8.5e-70	98.5
WP_032298608.1\|2516538_2517117_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.7e-79	98.4
WP_000752994.1\|2517128_2517482_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	9.0e-63	100.0
WP_021571135.1\|2517493_2517892_-	hypothetical protein	A0A0K2FIR1	Enterobacteria_phage	3.4e-50	82.6
WP_000063274.1\|2517933_2518959_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	7.3e-190	98.5
WP_001299443.1\|2519014_2519347_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.7e-55	100.0
WP_069904422.1\|2519356_2520676_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	3.1e-233	98.4
WP_053271575.1\|2520656_2522258_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	4.2e-309	99.1
WP_000198149.1\|2522254_2522461_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001027292.1\|2522457_2524383_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	100.0
2522691:2522706	attL	NA	NA	NA	NA
WP_000453580.1\|2524357_2524903_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	2.8e-95	100.0
WP_001663509.1\|2525291_2525525_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	96.3
WP_001059339.1\|2526303_2526828_-	Rha family transcriptional regulator	G8C7W4	Escherichia_phage	4.5e-87	94.2
WP_001139682.1\|2527030_2527183_-	hypothetical protein	Q716B2	Shigella_phage	2.1e-21	100.0
WP_157705045.1\|2527170_2527638_-\|lysis	lysis protein	A0A291AWW3	Escherichia_phage	8.8e-74	96.1
WP_157705046.1\|2527634_2528132_-	glycoside hydrolase family protein	A0A291AWW2	Escherichia_phage	5.8e-92	99.4
WP_000839596.1\|2528131_2528347_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_000737263.1\|2528936_2530019_+	porin OmpD	Q1MVN1	Enterobacteria_phage	4.4e-161	78.7
WP_001204780.1\|2530207_2530591_-	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.0e-56	84.2
WP_032084198.1\|2530676_2530817_-	YlcG family protein	K7PHH3	Enterobacteria_phage	4.7e-07	65.1
WP_157705047.1\|2530813_2531176_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	1.1e-58	94.0
WP_000950956.1\|2531195_2531390_-	protein ninF	NA	NA	NA	NA
WP_000386641.1\|2531382_2531724_-	DUF2591 domain-containing protein	Q76H72	Enterobacteria_phage	6.2e-61	95.6
WP_001254223.1\|2531726_2531903_-	NinE family protein	K7PHE6	Enterobacteria_phage	1.4e-27	98.3
WP_000153280.1\|2531899_2532427_-	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	9.5e-101	100.0
WP_000736903.1\|2532423_2532864_-	recombination protein NinB	A0A220NRM1	Escherichia_phage	7.0e-81	100.0
WP_000145933.1\|2532937_2533228_-	protein ren	K7P7K7	Enterobacteria_phage	9.6e-47	100.0
WP_000788877.1\|2533224_2533926_-	Replication protein 14	K7P6G2	Enterobacteria_phage	9.9e-130	100.0
WP_016063181.1\|2533922_2534822_-	replication protein	K7P7F0	Enterobacteria_phage	8.4e-174	100.0
WP_001177650.1\|2534856_2535135_-	transcriptional regulator	K7P7A2	Enterobacteria_phage	1.6e-43	100.0
WP_000620665.1\|2535243_2535438_-	hypothetical protein	K7PLQ6	Enterobacteria_phage	1.8e-28	100.0
WP_016063179.1\|2535544_2536261_+	helix-turn-helix domain-containing protein	K7P7K3	Enterobacteria_phage	9.2e-123	100.0
WP_016063178.1\|2536278_2536647_+	hypothetical protein	K7P6G1	Enterobacteria_phage	1.0e-56	100.0
WP_016063176.1\|2537210_2537483_+	hypothetical protein	K7P7A1	Enterobacteria_phage	3.6e-27	100.0
WP_021566050.1\|2537498_2538080_-	hypothetical protein	K7P6T7	Enterobacteria_phage	4.4e-99	99.5
WP_000213971.1\|2538293_2538473_+	Restriction inhibitor protein ral	M1FQU1	Enterobacteria_phage	6.6e-30	100.0
WP_053892839.1\|2538676_2539045_+	DUF2528 family protein	K7PGR6	Enterobacteria_phage	2.2e-64	97.5
WP_001198861.1\|2539117_2539282_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	1.1e-26	100.0
WP_000372941.1\|2539250_2539394_+	host cell division inhibitory peptide Kil	A0A1I9LJN2	Stx_converting_phage	1.2e-18	100.0
WP_000995439.1\|2539468_2539765_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
WP_000100845.1\|2539770_2540556_+	phage recombination protein Bet	A0A0N7KZJ3	Stx2-converting_phage	1.1e-148	100.0
WP_000186779.1\|2540552_2541233_+	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	7.9e-132	99.1
WP_000682306.1\|2541229_2541412_+	DUF1317 domain-containing protein	A0A0N7CHV0	Escherichia_phage	4.3e-29	100.0
WP_000548531.1\|2541384_2541576_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	7.3e-27	100.0
WP_077630928.1\|2541586_2541868_+	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	1.2e-46	97.8
WP_000763389.1\|2541966_2542185_+	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	1.2e-33	94.4
WP_000488407.1\|2542231_2542510_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
WP_061351518.1\|2542595_2542814_+	excisionase	Q77WA4	Escherichia_phage	1.1e-34	97.2
WP_000533645.1\|2542791_2543862_+\|integrase	tyrosine-type recombinase/integrase	K7P6P6	Enterobacteria_phage	1.5e-201	99.7
2545570:2545585	attR	NA	NA	NA	NA

DBSCAN-SWA_3

3066444 : 3142466

Bradyrhizobium_phage(12.5%)

plate,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000611744.1\|3066444_3066858_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_157705068.1\|3066861_3068712_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000348793.1\|3068675_3069758_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_157705140.1\|3071444_3072704_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_097451525.1\|3072708_3073470_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_157705139.1\|3076407_3076986_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_122545204.1\|3078522_3081957_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_001087741.1\|3081967_3083320_+	membrane protein	NA	NA	NA	NA
WP_001284199.1\|3083343_3083826_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_096967358.1\|3083869_3084784_+	hypothetical protein	NA	NA	NA	NA
WP_001086141.1\|3085405_3086191_-	lipoprotein	NA	NA	NA	NA
WP_001340895.1\|3086726_3087458_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	4.5e-40	39.0
WP_000917883.1\|3087522_3087990_+	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
WP_001326702.1\|3087986_3088709_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001052715.1\|3088742_3089498_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_000644685.1\|3089569_3090928_+	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
WP_000016007.1\|3090975_3091599_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_001230983.1\|3091602_3092403_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000648572.1\|3092643_3093558_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000997010.1\|3093554_3094358_-	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	2.4e-39	36.2
WP_039026197.1\|3099942_3100518_-	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000594006.1\|3100705_3101737_+	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	9.4e-36	39.7
WP_001294600.1\|3101729_3102383_+	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000874226.1\|3102422_3103238_+	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001202329.1\|3103355_3103760_+	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000094011.1\|3103756_3104464_+\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001260712.1\|3104575_3106294_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_001336393.1\|3106347_3107172_+	YaeF family permuted papain-like enzyme	NA	NA	NA	NA
WP_000239163.1\|3107371_3108082_-	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_000635537.1\|3108095_3108518_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_001185290.1\|3108514_3109060_-	YaeQ family protein	NA	NA	NA	NA
WP_000417058.1\|3109225_3109426_+	YaeP family protein	NA	NA	NA	NA
WP_000062312.1\|3109412_3109673_+	Rho-binding antiterminator	NA	NA	NA	NA
WP_000176549.1\|3109721_3111020_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000901099.1\|3111084_3111474_-	VOC family protein	NA	NA	NA	NA
WP_001020973.1\|3111530_3113672_-	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000055741.1\|3113770_3114730_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_001294757.1\|3114742_3118225_-	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.2e-209	36.9
WP_000569430.1\|3118261_3118858_-	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.0e-26	40.0
WP_000565966.1\|3120003_3120792_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000210739.1\|3120795_3121251_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_001139279.1\|3121355_3122381_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000758956.1\|3122384_3122870_-	molecular chaperone Skp	NA	NA	NA	NA
WP_001240896.1\|3122991_3125424_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_001295561.1\|3125453_3126806_-\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_000922446.1\|3126817_3127675_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_000811923.1\|3128632_3129829_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_000622418.1\|3129920_3130478_-	ribosome recycling factor	NA	NA	NA	NA
WP_000224573.1\|3130769_3131495_-	UMP kinase	NA	NA	NA	NA
WP_000818114.1\|3131641_3132493_-	elongation factor Ts	NA	NA	NA	NA
WP_000246882.1\|3132750_3133476_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_001018194.1\|3133843_3134638_+	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_001094586.1\|3134699_3137372_+	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA
WP_001186650.1\|3137402_3138227_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_000625631.1\|3138280_3139093_+	phosphodiesterase YaeI	NA	NA	NA	NA
WP_000272188.1\|3139254_3139641_+	DUF3461 family protein	NA	NA	NA	NA
WP_000929443.1\|3139729_3140887_-	CdaR family transcriptional regulator	NA	NA	NA	NA
WP_000753946.1\|3141041_3142466_-\|protease	serine endoprotease DegP	A0A1B1IT49	uncultured_Mediterranean_phage	1.9e-26	28.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP044299

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044299_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044299_1

247796-247953

Orphan

Consensus_repeat	Method
CCGTACCCGGTATAGTGGAT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP044299_1

>merge|NZ_CP044299|1|247796-247953|PILER-CR
CCGTACCCGGTATAGTGGATGAGAACTACTGCTAATCGGTTACCGGGAATGTGGTGGTACTGGGTGGAAAGGTTTACCCGGTATAGTGGATCGTGGCAGTGTCATCTTTCCGGATAGCATGACGTCACGGTTAGGAAACCGTACCCGGTATAGTGGAT

>NZ_CP044299|1|1|247796-247953|PILER-CR
CCGTACCCGGTATAGTGGAT	GAGAACTACTGCTAATCGGTTACCGGGAATGTGGTGGTACTGGGTGGAAAG
GTTTACCCGGTATAGTGGAT	CGTGGCAGTGTCATCTTTCCGGATAGCATGACGTCACGGTTAGGAAA
CCGTACCCGGTATAGTGGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044299.1\|WP_032339737.1\|245295_245532_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371986
NZ_CP044299.1\|WP_000097746.1\|246675_247557_+\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	gnl\|CDD\|374546
NZ_CP044299.1\|WP_011011067.1\|248654_248858_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044299.1\|WP_001292020.1\|241539_241959_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044299.1\|WP_001395482.1\|239869_240211_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044299.1\|WP_088474772.1\|245687_246284_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372704
NZ_CP044299.1\|WP_000666931.1\|242046_244431_-\|DUF4165-domain-containing-protein	unknown	unknown	gnl\|CDD\|372704
NZ_CP044299.1\|WP_000902167.1\|240215_240575_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044299.1\|WP_000502996.1\|239745_239868_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044299.1\|WP_011011066.1\|248142_248640_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044299.1\|WP_001226764.1\|249308_251765_-\|DUF4165-domain-containing-protein	unknown	unknown	gnl\|CDD\|372704
NZ_CP044299.1\|WP_000047134.1\|252210_252387_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044299.1\|WP_000178072.1\|240802_241507_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044299.1\|WP_001447605.1\|244681_245284_+\|DUF4165-domain-containing-protein	unknown	unknown	gnl\|CDD\|372706

Protein	Function_ID	Function_description	E-value
NZ_CP044299.1\|WP_088474772.1\|245687_246284_+\|hypothetical-protein	gnl\|CDD\|372704	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.	8.99979e-44
NZ_CP044299.1\|WP_000666931.1\|242046_244431_-\|DUF4165-domain-containing-protein	gnl\|CDD\|372704	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.	2.26735e-68
NZ_CP044299.1\|WP_001226764.1\|249308_251765_-\|DUF4165-domain-containing-protein	gnl\|CDD\|372704	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.	9.32876e-65
NZ_CP044299.1\|WP_032339737.1\|245295_245532_+\|hypothetical-protein	gnl\|CDD\|371986	pfam12245, Big_3_2, Bacterial Ig-like domain (group 3). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.	4.38686e-09
NZ_CP044299.1\|WP_000097746.1\|246675_247557_+\|RepB-family-plasmid-replication-initiator-protein	gnl\|CDD\|374546	pfam16441, DUF5038, Domain of unknown function (DUF5038). This family consists of several uncharacterized proteins around 200 residues in length and is mainly found in various Clostridiales species. The function of this family is unknown.	0.000541832
NZ_CP044299.1\|WP_001447605.1\|244681_245284_+\|DUF4165-domain-containing-protein	gnl\|CDD\|372706	pfam13752, DUF4165, Domain of unknown function (DUF4165).	3.66424e-39

>NZ_CP044299.1|WP_000097746.1|246675_247557_+|RepB-family-plasmid-replication-initiator-protein
MSSNNNKLSLVIEESLKDSGEVIQLFPTLKQTIQPKVLLRLGVFVPTLKSTDKGGRKSHHIDATEPLSRLSIVEGEGYSQIQIYGPRLDMDTDFKSWCGIVYALSNRPLDSEGQLELNFPEFAKFCGFDTKRIDKQLKERFDASLTRIARTNISFIKKIPGTDDQITINMHLVESTYYDSSTGKIIIKPNSKLNTLYRVDGKTRLYLKTLQKLARKESAQALYLYLAELPSTFYRIGFDRLRGRLQLSSHLGNQNATVKKALGQLKEIGFLEYSIDKENGDYVLNILKRNMKP
>NZ_CP044299.1|WP_088474772.1|245687_246284_+|hypothetical-protein
MVYGLENIRIALADNLTTPRITRLQITGGPTADNVELTWSPAGTNVYAPEYPRLFPSFEPSENYALSVTVSDSQSNSKTYTQKFSYLPNNLVQLHNLRTLSVSSALKTSLNEPLAYLSTNVLRKSNGEIAKDVQSATLTVRKDAAFGIKFNGVQAALGESVEMKIDMGLGDNLLVPIYPAENGKVGTSEFMIQIDELK
>NZ_CP044299.1|WP_032339737.1|245295_245532_+|hypothetical-protein
MYHTYSKNSVKGAGIPDSNLDEDFTAKVVIYDNAGNTRTLPLQLFRYDNYLGGPRSAKLRQRGARGFRISGLFSWDDR
>NZ_CP044299.1|WP_001447605.1|244681_245284_+|DUF4165-domain-containing-protein
MKNQAIALAMAMLGVSVPASAQIYESIFTDTNGIEVHAPSTRLLLNPASPVTLTLIAGLDRYVNVKITSATGTQLLNTTTTRTSVSDRLKAGDGSEFYGKKVTLPVLGEGRSVVQVSILDLNQSVVATYSYNWLVDTTPLSVNALTGNAAYGSTAGSVWKMGLEATGQFDFTSTNVTDVNGIEKGMFYVYRSNGSLFSTT
>NZ_CP044299.1|WP_000666931.1|242046_244431_-|DUF4165-domain-containing-protein
MKFCRRPLIVAVYTALLFPLYSQAQLYNYSYTDTRGTKVNAEPTREYLNPGSAITLNLISGLDRYERVTVTRSSDNVQMFQSVTGLVTVADRITAADGSEYYGKSMTLPVLGEGTFSLKSETLDNKSNVVATTSYSFSIDITPPVLPDPMQWIRAGFQYGSLDIFGDRTATQAISLSNVSDARSGLDKAEWFAIDSSGVRRTVNAQLNALTGVVQALAAVAAGSTVAPVSPAYYTVGFRVYDKAGNWTETSHRSGIDRTIPSYIQHQVRNAKTGVWEDYVPGMTIFENPVKFRYKRLKSDSTNFNGTDFGWVDQITNSDNTYFYTEATVSYPETYMYYELHTKAGLNVNLQYKTLKFTPGNGVAEAPRYLSGQYHFRDANTWTSSDIVRFTGPDCVDLGRVNVEPRSYVQTATIVGIGSCNVSVGESSCQVSMNYCKTSGKGYVPYQIHIRGTGSYANLGGLQSHFYTYWDMNAPVINSIVSSPLDKTVVMLVTDSDVTNDWTNYMWATNIFNLTLKDTSNKVSTLSPKNVTVLNYQLKQVTFDYSALPSGKYTATGAATDTYNNTAELTLSNTILHDVTPPVVDISFEGKQADGALVKGLENLVITLADDMTKASLKSITLSGGPTSDKVSVGWYSQGTDKYGLNYPRIFPATDDADSYQLTAVAVDEAGNTTTKVSRFRYVPNNLIEFNTLKTLAVGMGLKTSDNQPLAYLRTNSIRKKDGSLITGAQTGTLTVRKDAAFAVSMNGVAVVPGDSKDITIDFGQGDGVLIPIFPATSGNVGESSFMIELPQIQ
>NZ_CP044299.1|WP_001292020.1|241539_241959_-|hypothetical-protein
MSELAEKPLITRVAPLERIYYCASRAEGLKPDRHEIRMQSQFLLLGVIWLPPALAMAELERLLKGYDADHSRLLENVLETAHQQFLKFCEPQKREGGGVENHVECPRQDDALQCLRFMSTRYALAVDLCAAYVCSRYGR
>NZ_CP044299.1|WP_000178072.1|240802_241507_+|hypothetical-protein
MTMKNTVIPTVTENEMGEVITRHSAYGLVSVSRTSTTGQRLYASDLSHKEVVTMTFSESEQIERDGVIRHRLAEGRRRSPLLQVSLSPAQWATMITSFGMSDGVPCTINSLIRGDYERQPEIGYIESTRERYERQIREAAEREMAKLHEKLEVLRLLAVKGKAGKRELDEAYQSLLSVINNLPVNLAFTNQLIQESMVNIVSHGKAELEATAMGVAARLGMKEMSSLASLEEKK
>NZ_CP044299.1|WP_000902167.1|240215_240575_+|hypothetical-protein
MLHERRQVFRTTGGGTVRVQPSPHNNSTEYIIMTNANANDGKTSPVLPTLEQVYALLKANYKPARFADRDGEIWGHEYSWNLARSSLQDLEKYGKSYVSKHSDRMGDGFSFGPDLVIIR
>NZ_CP044299.1|WP_001395482.1|239869_240211_+|hypothetical-protein
MRELLGMAGAEHQASVMYQTFGHLDAKLGEKHKGHFVFINGQHGDLCVVHSEFSSFDEGPGYFSDRADFIWELVKNDGPCSKVGIYRFDGEYALPKRRNGRRFSGSVTCLQAF
>NZ_CP044299.1|WP_000502996.1|239745_239868_+|hypothetical-protein
MGDVATLPPKINDGVLRRWNARGKADKEALADYGVSVKEE
>NZ_CP044299.1|WP_011011066.1|248142_248640_-|hypothetical-protein
MMKSNAPLIILICLMIAFSAYVKSWSLLYTLLAASVSLTVMISLPFIVSPLQHSKFIALRILRLLVITLWTIGLVGVFFSVVERLVWVNADSYPAWLAKELDSPAITDGENFIKATESFEKICGKNKGYLSVVTKHNGIFMRCDDSLSFDSWWKGVYRLKTPETR
>NZ_CP044299.1|WP_011011067.1|248654_248858_-|hypothetical-protein
MIHFAEREARERKAHASSGPIVTLSSVIEAFFGIRFTPVQNDGNFSKAADDYKRSLSKLVQNGAPKE
>NZ_CP044299.1|WP_001226764.1|249308_251765_-|DUF4165-domain-containing-protein
MRKILTGCIIATAIASVYPAAAQIFSYSYTDTNQLAKTLKPATQSYLNPASTMTLNLISGLDRYERVSVTRDSDKKVMYSAVTGKISVADRIVAADGTEYYGKDLALPALGEGAFTVINDTLDLQQAVVSSSTYHFTIDTTAPKYTSIYPSQNAGYEMVLSGPVWGLGRGGSGQFSIFADGVDDANGIDKIRLVIKRGNGTVVSDNTLSYDTAAKRAFYPWIKDSVTQPGMPTSDLNEEFTFNFIITDKAGNTLNIPPQRFLFDDQIGEYTPFAVHDSRVSTSVVPGISSGYVPFVRGLSVLENPYRMVIRIPRTNWKPYRNGGITILNNYGGAKVISEDTTYVYVEVKLPQGALDINYYRPVNTYQWSGGDLTQYASWLNWDPASVKSPAWGSPAIERQMSDGTWFNSVNWKYFKASDMPVNLTQIRFNVQARPYDQKITGGATCNIPAGSTSCTVALTQAITNGTTGYLHSGYEVRSTTESTFFMPIWENVVWHTLGPSVTGYDYNDTTNILQVYINQPGDGSYFDTVKLSRVWLSDKSRNNADINVTGTLTGRNTATGNYTYEFNLKLIPEGSYNVQLNAQDSFNNTGSLDYKTVTVDNTPPSISISYETKPITSSVTVYGLENIRIQLADTLTKPSLTRMTLRGGPVSDAVELSWVNLGNNLYAPNYPKIFPSLNDGETYTLTVQAKDEMNNVKESAVEFSYLPNNLVRLENLKTISVSTALKTSDDTPLAVLYASQLRKKDGSIATGKQDAILTVRKDAAFGVTVNGVSAAPGESKNVQLDLGLGDSRSFPIFPSTSGVVGTSEFMLNIEELK
>NZ_CP044299.1|WP_000047134.1|252210_252387_-|hypothetical-protein
MSKSSPVLPEDRDDIEFVMDDFQRSLGKSKPVREVQFLGESQQSEESANSADSPWFES

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_LT904879	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2	81476-81526	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_KX129784	Escherichia coli strain H226B plasmid pH226B, complete sequence	182983-183033	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NC_009981	Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence	180762-180812	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029645	Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence	27631-27681	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029729	Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence	96276-96326	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP053721	Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence	235796-235846	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP026790	Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence	42635-42685	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP039717	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence	152742-152792	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	KP899804	Salmonella enterica strain F8475 plasmid pF8475, complete sequence	142863-142913	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	KP899805	Salmonella enterica strain 109/9 plasmid p109/9, complete sequence	133710-133760	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	KP899806	Salmonella enterica strain B71 plasmid pB71, complete sequence	117174-117224	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP037875	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence	192529-192579	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP018652	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence	11544-11594	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	MN232190	Escherichia coli plasmid pGD27-31, complete sequence	77135-77185	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP044299	Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence	247816-247866	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029690	Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence	175824-175874	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NC_003384	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence	29608-29658	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP030182	Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence	195030-195080	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP049354	Escherichia coli strain T28R plasmid pT28R-1, complete sequence	160405-160455	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP023167	Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence	229056-229106	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	AP020333	Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome	1240-1290	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP039559	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence	150895-150945	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP037911	Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence	222888-222938	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP046717	Escherichia coli strain T16R plasmid pT16R-1, complete sequence	157698-157748	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	MN256758	Escherichia coli strain 4M8F plasmid p4M8F, complete sequence	163625-163675	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	MN256759	Escherichia coli strain 4M9F plasmid p4M9F, complete sequence	139403-139453	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP046007	Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence	103197-103247	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NC_002305	Salmonella typhi plasmid R27, complete sequence	54047-54097	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP046004	Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence	156262-156312	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP024236	Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence	114948-114998	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029895	Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence	27631-27681	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029877	Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence	27631-27681	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP033094	Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence	99282-99332	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	LT905061	Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2	190141-190191	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029926	Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence	186842-186892	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029947	Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence	27631-27681	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP044968	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence	163174-163224	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP044958	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence	95412-95462	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029943	Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence	27631-27681	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029953	Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence	27631-27681	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029955	Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence	27631-27681	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP022495	Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence	154888-154938	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP016184	Escherichia coli strain EC2 plasmid pEC2-4, complete sequence	135342-135392	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP016183	Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence	101555-101605	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029924	Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence	111577-111627	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029934	Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence	27631-27681	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	MN256757	Escherichia coli strain 4M18F plasmid p4M18F, complete sequence	163625-163675	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NC_013365	Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence	192086-192136	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP041449	Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence	157699-157749	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029939	Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence	27631-27681	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029957	Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence	27631-27681	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029941	Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence	27631-27681	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029910	Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence	27631-27681	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029887	Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence	27631-27681	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029948	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence	27631-27681	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029937	Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence	27631-27681	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029879	Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence	27631-27681	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP018656	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence	237889-237939	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NC_016825	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence	79517-79567	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029931	Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence	27631-27681	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_CP029935	Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence	27631-27681	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_LT985296	Escherichia coli strain 1454 plasmid RCS78_p, complete sequence	106159-106209	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_MN101858	Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence	267735-267785	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_MN101856	Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence	173816-173866	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_MH733010	Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence	95376-95426	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	MT219825	Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence	230101-230151	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_MG904992	Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence	20571-20621	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NZ_MG948335	Escherichia coli strain 3498 plasmid p3498, complete sequence	1141-1191	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NC_023277	Escherichia coli strain 63743 plasmid pEQ2, complete sequence	259337-259387	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	NC_023289	Escherichia coli strain T23 plasmid pEQ1, complete sequence	210872-210922	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	MT219824	Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence	110178-110228	1.0
NZ_CP044299_1	1.1\|247816\|51\|NZ_CP044299\|PILER-CR	247816-247866	51	MG874042	Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence	111658-111708	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP026790	Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence	42568-42614	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP039717	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence	152675-152721	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	KP899804	Salmonella enterica strain F8475 plasmid pF8475, complete sequence	142796-142842	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	KP899805	Salmonella enterica strain 109/9 plasmid p109/9, complete sequence	133643-133689	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	KP899806	Salmonella enterica strain B71 plasmid pB71, complete sequence	117107-117153	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP037875	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence	192462-192508	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP018652	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence	11477-11523	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP039559	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence	150828-150874	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	MN256758	Escherichia coli strain 4M8F plasmid p4M8F, complete sequence	163558-163604	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	MN256759	Escherichia coli strain 4M9F plasmid p4M9F, complete sequence	139336-139382	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP046007	Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence	103130-103176	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NC_002305	Salmonella typhi plasmid R27, complete sequence	53980-54026	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	LT905061	Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2	190074-190120	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP022495	Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence	154821-154867	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP016184	Escherichia coli strain EC2 plasmid pEC2-4, complete sequence	135275-135321	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP016183	Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence	101488-101534	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	MN256757	Escherichia coli strain 4M18F plasmid p4M18F, complete sequence	163558-163604	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NC_016825	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence	79450-79496	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	MT219825	Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence	230034-230080	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	MT219824	Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence	110111-110157	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_LT904879	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2	81547-81593	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_KX129784	Escherichia coli strain H226B plasmid pH226B, complete sequence	183054-183100	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NC_009981	Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence	180833-180879	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029645	Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence	27702-27748	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029729	Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence	96347-96393	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP053721	Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence	235867-235913	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	MN232190	Escherichia coli plasmid pGD27-31, complete sequence	77206-77252	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP044299	Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence	247887-247933	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029690	Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence	175895-175941	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NC_003384	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence	29679-29725	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP030182	Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence	195101-195147	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP049354	Escherichia coli strain T28R plasmid pT28R-1, complete sequence	160476-160522	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP023167	Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence	229127-229173	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	AP020333	Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome	1311-1357	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP037911	Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence	222959-223005	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP046717	Escherichia coli strain T16R plasmid pT16R-1, complete sequence	157769-157815	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP046004	Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence	156333-156379	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP024236	Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence	115019-115065	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029895	Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence	27702-27748	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029877	Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence	27702-27748	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP033094	Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence	99353-99399	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029926	Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence	186913-186959	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029947	Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence	27702-27748	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP044968	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence	163245-163291	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP044958	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence	95483-95529	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029943	Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence	27702-27748	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029953	Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence	27702-27748	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029955	Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence	27702-27748	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029924	Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence	111648-111694	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029934	Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence	27702-27748	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NC_013365	Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence	192157-192203	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP041449	Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence	157770-157816	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029939	Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence	27702-27748	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029957	Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence	27702-27748	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029941	Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence	27702-27748	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029910	Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence	27702-27748	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029887	Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence	27702-27748	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029948	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence	27702-27748	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029937	Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence	27702-27748	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029879	Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence	27702-27748	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP018656	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence	237960-238006	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029931	Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence	27702-27748	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_CP029935	Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence	27702-27748	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_LT985296	Escherichia coli strain 1454 plasmid RCS78_p, complete sequence	106230-106276	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_MN101858	Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence	267806-267852	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_MN101856	Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence	173887-173933	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_MH733010	Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence	95447-95493	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_MG904992	Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence	20642-20688	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NZ_MG948335	Escherichia coli strain 3498 plasmid p3498, complete sequence	1212-1258	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NC_023277	Escherichia coli strain 63743 plasmid pEQ2, complete sequence	259408-259454	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	NC_023289	Escherichia coli strain T23 plasmid pEQ1, complete sequence	210943-210989	1.0
NZ_CP044299_1	1.2\|247887\|47\|NZ_CP044299\|PILER-CR	247887-247933	47	MG874042	Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence	111729-111775	1.0

1. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_LT904879 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

2. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_KX129784 (Escherichia coli strain H226B plasmid pH226B, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

3. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NC_009981 (Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

4. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029645 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

5. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029729 (Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

6. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP053721 (Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

7. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP026790 (Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

8. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP039717 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

9. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to KP899804 (Salmonella enterica strain F8475 plasmid pF8475, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

10. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to KP899805 (Salmonella enterica strain 109/9 plasmid p109/9, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

11. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to KP899806 (Salmonella enterica strain B71 plasmid pB71, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

12. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP037875 (Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

13. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP018652 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

14. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to MN232190 (Escherichia coli plasmid pGD27-31, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

15. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP044299 (Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

16. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029690 (Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

17. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NC_003384 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

18. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP030182 (Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

19. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP049354 (Escherichia coli strain T28R plasmid pT28R-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

20. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP023167 (Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

21. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to AP020333 (Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

22. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP039559 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

23. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP037911 (Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

24. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP046717 (Escherichia coli strain T16R plasmid pT16R-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

25. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to MN256758 (Escherichia coli strain 4M8F plasmid p4M8F, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

26. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to MN256759 (Escherichia coli strain 4M9F plasmid p4M9F, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

27. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP046007 (Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

28. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NC_002305 (Salmonella typhi plasmid R27, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

29. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP046004 (Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

30. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP024236 (Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

31. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029895 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

32. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029877 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

33. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP033094 (Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

34. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to LT905061 (Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

35. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029926 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

36. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029947 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

37. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP044968 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

38. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP044958 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

39. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029943 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

40. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029953 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

41. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029955 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

42. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP022495 (Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

43. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP016184 (Escherichia coli strain EC2 plasmid pEC2-4, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

44. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP016183 (Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

45. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029924 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

46. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029934 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

47. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to MN256757 (Escherichia coli strain 4M18F plasmid p4M18F, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

48. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NC_013365 (Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

49. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP041449 (Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

50. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029939 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

51. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029957 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

52. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029941 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

53. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029910 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

54. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029887 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

55. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029948 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

56. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029937 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

57. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029879 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

58. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP018656 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

59. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NC_016825 (Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

60. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029931 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

61. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_CP029935 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

62. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_LT985296 (Escherichia coli strain 1454 plasmid RCS78_p, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

63. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_MN101858 (Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

64. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_MN101856 (Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

65. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_MH733010 (Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

66. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to MT219825 (Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

67. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_MG904992 (Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

68. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NZ_MG948335 (Escherichia coli strain 3498 plasmid p3498, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

69. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NC_023277 (Escherichia coli strain 63743 plasmid pEQ2, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

70. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to NC_023289 (Escherichia coli strain T23 plasmid pEQ1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

71. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to MT219824 (Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

72. spacer 1.1|247816|51|NZ_CP044299|PILER-CR matches to MG874042 (Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

73. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP026790 (Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

74. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP039717 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

75. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to KP899804 (Salmonella enterica strain F8475 plasmid pF8475, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

76. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to KP899805 (Salmonella enterica strain 109/9 plasmid p109/9, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

77. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to KP899806 (Salmonella enterica strain B71 plasmid pB71, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

78. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP037875 (Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

79. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP018652 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

80. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP039559 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

81. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to MN256758 (Escherichia coli strain 4M8F plasmid p4M8F, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

82. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to MN256759 (Escherichia coli strain 4M9F plasmid p4M9F, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

83. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP046007 (Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

84. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NC_002305 (Salmonella typhi plasmid R27, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

85. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to LT905061 (Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

86. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP022495 (Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

87. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP016184 (Escherichia coli strain EC2 plasmid pEC2-4, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

88. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP016183 (Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

89. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to MN256757 (Escherichia coli strain 4M18F plasmid p4M18F, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

90. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NC_016825 (Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

91. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to MT219825 (Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

92. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to MT219824 (Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

93. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_LT904879 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

94. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_KX129784 (Escherichia coli strain H226B plasmid pH226B, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

95. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NC_009981 (Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

96. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029645 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

97. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029729 (Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

98. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP053721 (Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

99. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to MN232190 (Escherichia coli plasmid pGD27-31, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

100. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP044299 (Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

101. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029690 (Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

102. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NC_003384 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

103. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP030182 (Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

104. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP049354 (Escherichia coli strain T28R plasmid pT28R-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

105. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP023167 (Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

106. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to AP020333 (Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

107. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP037911 (Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

108. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP046717 (Escherichia coli strain T16R plasmid pT16R-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

109. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP046004 (Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

110. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP024236 (Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

111. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029895 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

112. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029877 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

113. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP033094 (Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

114. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029926 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

115. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029947 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

116. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP044968 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

117. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP044958 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

118. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029943 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

119. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029953 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

120. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029955 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

121. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029924 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

122. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029934 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

123. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NC_013365 (Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

124. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP041449 (Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

125. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029939 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

126. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029957 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

127. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029941 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

128. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029910 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

129. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029887 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

130. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029948 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

131. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029937 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

132. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029879 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

133. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP018656 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

134. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029931 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

135. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_CP029935 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

136. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_LT985296 (Escherichia coli strain 1454 plasmid RCS78_p, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

137. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_MN101858 (Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

138. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_MN101856 (Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

139. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_MH733010 (Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

140. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_MG904992 (Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

141. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NZ_MG948335 (Escherichia coli strain 3498 plasmid p3498, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

142. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NC_023277 (Escherichia coli strain 63743 plasmid pEQ2, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

143. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to NC_023289 (Escherichia coli strain T23 plasmid pEQ1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

144. spacer 1.2|247887|47|NZ_CP044299|PILER-CR matches to MG874042 (Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 8048

Salmonella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001281654.1\|1181_2339_-	DNA-binding protein	A0A2P9HXK7	Yersinia_phage	1.1e-19	24.6
WP_001225593.1\|2698_3523_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A2P9J4Y7	Pectobacterium_phage	2.8e-46	37.6
WP_001178650.1\|3537_4359_-	hypothetical protein	NA	NA	NA	NA
WP_000682872.1\|4639_5347_-	hypothetical protein	NA	NA	NA	NA
WP_000357613.1\|5343_5544_-	hypothetical protein	NA	NA	NA	NA
WP_001015069.1\|5561_6638_-	hypothetical protein	A0A1P8DTT7	Salmonella_phage	7.8e-09	31.8
WP_001282731.1\|7172_8048_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.6e-60	43.5

DBSCAN-SWA_2

23416 : 24424

Aeromonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001278833.1\|23416_24424_+	peptide transporter	A0A1I9KFW9	Aeromonas_phage	3.9e-10	32.1

DBSCAN-SWA_3

27667 : 30595

Enterobacteria_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000137273.1\|27667_28702_+	hypothetical protein	A0A0A7NPX4	Enterobacteria_phage	6.7e-42	34.3
WP_157705147.1\|28745_29423_+	hypothetical protein	NA	NA	NA	NA
WP_000019448.1\|29614_30595_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	8.9e-185	99.1

DBSCAN-SWA_4

50662 : 52447

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000517883.1\|50662_52447_+	ATP-dependent helicase	S5MMD7	Bacillus_phage	2.1e-19	26.4

DBSCAN-SWA_5

60226 : 61480

Pseudomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001113001.1\|60226_61480_+	hypothetical protein	A0A0H5AWB1	Pseudomonas_phage	3.0e-12	29.7

DBSCAN-SWA_6

72779 : 148838

Salmonella_phage(35.0%)

integrase,transposase

attL 124654:124713|attR 148842:148972

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001086279.1\|72779_73961_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_001324690.1\|74175_74388_+	hypothetical protein	NA	NA	NA	NA
WP_001232452.1\|78124_79198_+	hypothetical protein	NA	NA	NA	NA
WP_001247564.1\|79275_79419_-	hypothetical protein	NA	NA	NA	NA
WP_000416123.1\|79454_79931_-	hypothetical protein	NA	NA	NA	NA
WP_000111572.1\|80078_80354_+	hypothetical protein	NA	NA	NA	NA
WP_011011074.1\|80343_80544_+	hypothetical protein	NA	NA	NA	NA
WP_000341067.1\|80610_81003_+	hypothetical protein	NA	NA	NA	NA
WP_000493077.1\|81415_81619_+	hypothetical protein	NA	NA	NA	NA
WP_001255860.1\|81773_82979_+	hypothetical protein	NA	NA	NA	NA
WP_088474850.1\|83148_83646_+	hypothetical protein	NA	NA	NA	NA
WP_016236836.1\|83712_84636_+\|transposase	IS5-like element IS903B family transposase	Q9MCT5	Escherichia_phage	7.1e-176	98.7
WP_000583905.1\|84807_85035_+	hypothetical protein	NA	NA	NA	NA
WP_001209044.1\|85144_85951_+	HNH endonuclease	G0X580	Salmonella_phage	1.3e-13	37.9
WP_011011075.1\|86056_86476_+	hypothetical protein	NA	NA	NA	NA
WP_000097904.1\|86783_87233_+	HNH endonuclease	A0A1S6KZY3	Salmonella_phage	4.9e-05	34.3
WP_001287388.1\|87998_88403_-	H-NS histone family protein	NA	NA	NA	NA
WP_001189577.1\|91587_93138_-	multicopper oxidase CueO	A0A0C6DWA2	Mamastrovirus	2.7e-18	55.4
WP_124038505.1\|94471_94663_-	hypothetical protein	NA	NA	NA	NA
WP_000062400.1\|95833_96289_+	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_000272280.1\|96457_96646_+	hypothetical protein	NA	NA	NA	NA
WP_010892342.1\|96648_97869_+	hypothetical protein	NA	NA	NA	NA
WP_000323423.1\|97923_98127_-	hypothetical protein	NA	NA	NA	NA
WP_000529857.1\|98164_99460_-	DUF1173 family protein	NA	NA	NA	NA
WP_011011077.1\|99484_99655_-	hypothetical protein	NA	NA	NA	NA
WP_000282148.1\|99783_101211_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-101	55.3
WP_000173534.1\|101434_101950_+	thermonuclease family protein	V5UN65	Mycobacterium_phage	7.1e-08	28.3
WP_011011078.1\|101946_102879_+	hypothetical protein	NA	NA	NA	NA
WP_000250919.1\|102934_103714_+	hypothetical protein	NA	NA	NA	NA
WP_157705149.1\|104609_105218_-	hypothetical protein	NA	NA	NA	NA
WP_000429836.1\|108353_108788_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001294663.1\|108859_109210_+	mercuric transport protein MerT	NA	NA	NA	NA
WP_157705158.1\|111456_112710_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_015387340.1\|112965_113841_+	class A extended-spectrum beta-lactamase CTX-M-55	A0A1B0VBP7	Salmonella_phage	2.4e-125	82.1
WP_001393253.1\|113887_114220_-	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
WP_074150773.1\|119369_119714_-	resolvase	A0A219YB42	Aeromonas_phage	9.8e-14	44.6
WP_001067858.1\|119749_120454_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000587837.1\|122036_122579_+	AAA family ATPase	NA	NA	NA	NA
WP_000951934.1\|123060_123252_-	hypothetical protein	NA	NA	NA	NA
WP_001330846.1\|123257_123503_+	hypothetical protein	NA	NA	NA	NA
124654:124713	attL	NA	NA	NA	NA
WP_001067855.1\|124716_125421_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_157705159.1\|125976_127167_+	macrolide efflux MFS transporter Mef(B)	A0A1B0RXA6	Streptococcus_phage	8.0e-71	39.1
WP_001354008.1\|128209_128455_+	hypothetical protein	NA	NA	NA	NA
WP_000034420.1\|128923_129715_+	sulfonamide-resistant dihydropteroate synthase Sul3	A0A0B5J4J5	Pandoravirus	1.2e-14	26.5
WP_000800531.1\|130894_131227_-	quaternary ammonium compound efflux SMR transporter QacL	NA	NA	NA	NA
WP_011113049.1\|131396_132188_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA25	NA	NA	NA	NA
WP_001336345.1\|132193_132484_-	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_000845039.1\|133233_134247_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000454193.1\|134449_134800_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000147567.1\|134925_135486_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_015344976.1\|135488_138440_+\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.5
WP_046788546.1\|138448_138850_+	hypothetical protein	NA	NA	NA	NA
WP_001067784.1\|138934_139639_-\|transposase	IS6-like element IS1006 family transposase	A0A077SL39	Escherichia_phage	1.9e-120	85.8
WP_001447541.1\|140563_141448_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_058657119.1\|141664_142879_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	5.5e-19	28.7
WP_001255015.1\|142906_143212_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001445143.1\|144851_145103_+	hypothetical protein	NA	NA	NA	NA
WP_000251875.1\|144996_145299_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_001043260.1\|145385_146201_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_085940648.1\|146290_147380_+\|transposase	IS4 family transposase ISAba1	NA	NA	NA	NA
WP_157705150.1\|147577_147850_-	hypothetical protein	NA	NA	NA	NA
WP_157705151.1\|148583_148838_-	hypothetical protein	A0A077SL39	Escherichia_phage	2.0e-08	64.1
148842:148972	attR	NA	NA	NA	NA

DBSCAN-SWA_7

152188 : 153394

Yersinia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000108723.1\|152188_153394_+	DNA-binding protein	A0A2P9HXK7	Yersinia_phage	2.0e-13	27.5

DBSCAN-SWA_8

157458 : 159370

Clostridioides_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011011085.1\|157458_158172_-	NERD domain-containing protein	A0A2R2ZH57	Clostridioides_phage	5.7e-08	36.4
WP_000476770.1\|158188_159370_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	7.5e-05	28.1

DBSCAN-SWA_9

182340 : 182775

Morganella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001395519.1\|182340_182775_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.2e-21	41.1

DBSCAN-SWA_10

196353 : 197835

Ostreococcus_tauri_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088475060.1\|196353_197835_-	fructuronate reductase	H8ZJP8	Ostreococcus_tauri_virus	3.2e-45	31.6

DBSCAN-SWA_11

208830 : 209166

Emiliania_huxleyi_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000046891.1\|208830_209166_+	thermonuclease family protein	G8DH70	Emiliania_huxleyi_virus	2.8e-05	35.7

DBSCAN-SWA_12

214314 : 220291

Enterobacteria_phage(75.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157705156.1\|214314_215019_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	5.3e-139	99.6
WP_012817690.1\|215518_218527_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	64.5
WP_001235713.1\|218690_219248_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_000027057.1\|219430_220291_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0

DBSCAN-SWA_13

225805 : 228805

Salmonella_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011011059.1\|225805_226126_-	hypothetical protein	S4TRP7	Salmonella_phage	5.3e-06	40.0
WP_094337918.1\|226202_226556_-	hypothetical protein	NA	NA	NA	NA
WP_000478449.1\|226571_227180_-	hypothetical protein	NA	NA	NA	NA
WP_001395478.1\|227210_227735_-	HNH endonuclease	C6ZR29	Salmonella_phage	6.2e-44	62.8
WP_001058453.1\|227765_228077_-	hypothetical protein	NA	NA	NA	NA
WP_016246464.1\|228073_228805_-	hypothetical protein	Q71T76	Escherichia_phage	4.3e-67	56.1

DBSCAN-SWA_14

236291 : 236588

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000581856.1\|236291_236588_-	toxin-plasmid maintenance system killer protein	A0A222YWE2	Escherichia_phage	4.9e-06	35.1

DBSCAN-SWA_15

240215 : 241507

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000902167.1\|240215_240575_+	hypothetical protein	M9UXL5	Escherichia_phage	2.9e-08	45.1
WP_000178072.1\|240802_241507_+	hypothetical protein	A0A1W6DXB8	Sphingobium_phage	7.1e-11	25.2

DBSCAN-SWA_16

246675 : 247557

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000097746.1\|246675_247557_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	6.5e-54	41.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP044300

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 16999

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_123902832.1\|1426_2173_+	hypothetical protein	J9Q6J5	Salmonella_phage	1.7e-127	92.3
WP_025670519.1\|2503_3073_+	hypothetical protein	J9Q7Z7	Salmonella_phage	7.9e-85	80.4
WP_032187593.1\|3338_4217_+	phosphoribosyl-ATP pyrophosphohydrolase	J9Q742	Salmonella_phage	5.2e-160	98.6
WP_087905085.1\|4384_5500_+	thymidylate synthase	J9Q6J6	Salmonella_phage	9.6e-220	99.5
WP_123902833.1\|5501_5915_+	hypothetical protein	J9Q7Z8	Salmonella_phage	9.5e-72	97.8
WP_053292504.1\|5911_6388_+	dihydrofolate reductase	J9Q7T1	Salmonella_phage	2.6e-89	98.7
WP_157705162.1\|6387_7032_+	AAA family ATPase	J9Q7H4	Salmonella_phage	8.6e-112	95.8
WP_025670513.1\|7095_7515_+	hypothetical protein	J9Q743	Salmonella_phage	4.6e-66	95.7
WP_025670512.1\|7524_8079_+	3'-5' exonuclease	J9Q6J8	Salmonella_phage	2.8e-95	95.1
WP_096098934.1\|8123_9080_+	hypothetical protein	J9Q7Z9	Salmonella_phage	1.4e-97	72.4
WP_004109976.1\|9234_9828_+	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	2.1e-112	100.0
WP_025670509.1\|10030_10261_+	hypothetical protein	J9Q7H5	Salmonella_phage	3.3e-34	97.3
WP_063085666.1\|10854_11463_+	ribonuclease HI	J9Q745	Salmonella_phage	6.0e-115	98.0
WP_032187601.1\|11605_12106_+	hypothetical protein	J9Q6J9	Salmonella_phage	1.7e-67	84.3
WP_063085669.1\|12115_12304_+	hypothetical protein	J9Q800	Salmonella_phage	7.9e-18	74.2
WP_077881864.1\|12467_13226_+	hypothetical protein	J9Q7T3	Salmonella_phage	1.1e-129	97.1
WP_063085676.1\|13334_13907_+	hypothetical protein	J9Q7H6	Salmonella_phage	3.8e-95	97.4
WP_124062457.1\|13932_14349_-	hypothetical protein	NA	NA	NA	NA
WP_149019170.1\|14505_16209_+	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	95.9
WP_063085701.1\|16297_16999_+	hypothetical protein	J9Q6K2	Salmonella_phage	2.7e-79	70.3

DBSCAN-SWA_2

20431 : 66888

Salmonella_phage(91.49%)

tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001711135.1\|20431_20743_+	hypothetical protein	J9Q7T7	Salmonella_phage	3.0e-30	64.1
WP_032187823.1\|20864_21260_+	hypothetical protein	J9Q7I1	Salmonella_phage	2.0e-42	63.8
WP_050489710.1\|21341_21752_+	hypothetical protein	NA	NA	NA	NA
WP_148726034.1\|22081_22369_+	ABC transporter	J9Q753	Salmonella_phage	3.6e-38	79.6
WP_001009192.1\|22573_23056_+	hypothetical protein	J9Q805	Salmonella_phage	7.9e-62	69.8
WP_001711144.1\|23679_23910_-	hypothetical protein	NA	NA	NA	NA
WP_105906915.1\|23960_24611_-	hypothetical protein	J9Q754	Salmonella_phage	2.5e-111	95.8
WP_053292515.1\|24932_25460_-	transcriptional regulator	J9Q6L0	Salmonella_phage	6.4e-81	96.6
WP_001711179.1\|25946_26225_-	hypothetical protein	J9Q7T9	Salmonella_phage	2.1e-38	92.4
WP_096098941.1\|26227_27787_-	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	9.2e-293	98.7
WP_033870685.1\|27851_28550_+	chromosome partitioning protein ParB	J9Q756	Salmonella_phage	2.4e-123	98.3
WP_000164561.1\|28549_29218_+	chromosome partitioning protein ParB	J9Q6L1	Salmonella_phage	1.1e-114	99.5
WP_016051719.1\|29214_29853_+	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	3.8e-112	100.0
WP_001113021.1\|29845_30100_+	hypothetical protein	J9Q7U0	Salmonella_phage	4.1e-41	98.8
WP_029463959.1\|30096_30996_+	hypothetical protein	J9Q7I6	Salmonella_phage	3.1e-168	99.3
WP_000176291.1\|31005_31272_+	hypothetical protein	J9Q757	Salmonella_phage	1.3e-42	100.0
WP_023135664.1\|31467_32109_+	hypothetical protein	J9Q6D4	Salmonella_phage	5.2e-109	98.6
WP_096098942.1\|32111_33368_+\|terminase	terminase	J9Q7Y2	Salmonella_phage	7.7e-250	98.6
WP_157705164.1\|33385_34975_+	hypothetical protein	J9Q7R1	Salmonella_phage	2.0e-295	97.3
WP_032187310.1\|34997_35894_+	hypothetical protein	J9Q7F4	Salmonella_phage	1.5e-146	95.6
WP_032187309.1\|35920_36796_+	hypothetical protein	J9Q710	Salmonella_phage	4.2e-162	98.6
WP_032187308.1\|36870_37299_+	Ig-like domain-containing protein	J9Q6D6	Salmonella_phage	2.3e-52	57.2
WP_032187307.1\|37342_37777_+	hypothetical protein	J9Q7Y3	Salmonella_phage	3.2e-70	93.8
WP_096098944.1\|37776_38610_+	hypothetical protein	J9Q7R2	Salmonella_phage	2.5e-148	95.7
WP_032187305.1\|38707_39052_+	hypothetical protein	J9Q7F6	Salmonella_phage	1.5e-54	95.6
WP_032187304.1\|39042_39516_+	hypothetical protein	J9Q711	Salmonella_phage	1.4e-79	96.8
WP_032187303.1\|39517_39901_+	hypothetical protein	J9Q6D8	Salmonella_phage	2.5e-66	96.9
WP_032187301.1\|39975_40722_+	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	2.6e-128	97.6
WP_000163862.1\|40781_41099_+	hypothetical protein	J9Q7R3	Salmonella_phage	6.0e-50	98.1
WP_002228782.1\|41179_41449_+	hypothetical protein	J9Q7F7	Salmonella_phage	8.4e-37	100.0
WP_157705165.1\|41456_46028_+	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	84.1
WP_063122783.1\|46070_46406_+\|tail	phage tail protein	J9Q6E1	Salmonella_phage	8.8e-52	85.5
WP_096098946.1\|46455_47187_+\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	3.3e-136	99.1
WP_096098947.1\|47179_47977_+\|tail	phage tail protein	J9Q7R4	Salmonella_phage	3.4e-158	97.4
WP_064674264.1\|47964_48558_+\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	4.3e-102	93.9
WP_157705166.1\|48568_53149_+	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	0.0e+00	86.9
WP_063122796.1\|54640_56437_+\|tail	tail fiber protein	X2KTY7	Enterobacteria_phage	3.0e-05	60.8
WP_001711183.1\|56433_57336_+	macro domain protein	A0A0M4QWS3	Salmonella_phage	1.9e-96	67.0
WP_063122786.1\|57344_57926_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	7.3e-94	86.9
WP_001711185.1\|58059_58383_+	hypothetical protein	J9Q6E7	Salmonella_phage	1.4e-38	80.4
WP_024172707.1\|58396_59089_+	membrane protein	J9Q7Y7	Salmonella_phage	2.7e-119	90.0
WP_023135660.1\|59091_59343_+	hypothetical protein	J9Q7R6	Salmonella_phage	1.0e-20	65.1
WP_032187665.1\|59511_60033_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001711191.1\|60040_60310_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_023135658.1\|60629_61295_+	AAA family ATPase	J9Q7R7	Salmonella_phage	2.0e-116	98.2
WP_023135657.1\|61294_61654_+	hypothetical protein	J9Q7G3	Salmonella_phage	1.5e-44	97.9
WP_001711193.1\|61706_62474_-	hypothetical protein	NA	NA	NA	NA
WP_032187666.1\|62757_63483_+	hypothetical protein	J9Q7R8	Salmonella_phage	1.3e-137	96.3
WP_097296309.1\|63543_64884_+	AAA family ATPase	J9Q7G4	Salmonella_phage	8.5e-247	99.1
WP_096945091.1\|64944_66156_+	DNA primase	J9Q720	Salmonella_phage	3.7e-209	94.6
WP_032187669.1\|66289_66667_-	type II toxin-antitoxin system death-on-curing family toxin	Q71T66	Escherichia_phage	1.6e-57	92.0
WP_001603498.1\|66666_66888_-	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	8.1e-30	94.5

DBSCAN-SWA_3

73771 : 77324

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033546495.1\|73771_74584_+	hypothetical protein	J9Q7Z0	Salmonella_phage	3.0e-122	84.4
WP_033546513.1\|74883_75141_+	hypothetical protein	J9Q7R9	Salmonella_phage	3.5e-32	87.1
WP_063122715.1\|75175_76498_+	DNA ligase	J9Q7G5	Salmonella_phage	2.1e-253	97.7
WP_031614921.1\|76497_76674_+	hypothetical protein	J9Q729	Salmonella_phage	3.2e-21	91.4
WP_149016823.1\|76663_76870_+	hypothetical protein	J9Q6I3	Salmonella_phage	3.8e-29	91.2
WP_149016822.1\|76869_77022_+	hypothetical protein	J9Q7Z1	Salmonella_phage	1.0e-15	82.0
WP_023135645.1\|77018_77324_+	hypothetical protein	J9Q7S1	Salmonella_phage	2.3e-46	92.1

DBSCAN-SWA_4

84916 : 116283

Salmonella_phage(80.0%)

integrase

attL 77890:77905|attR 90976:90991

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
77890:77905	attL	NA	NA	NA	NA
WP_063073125.1\|84916_86020_+\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	1.9e-26	33.9
WP_003980690.1\|86014_86404_-	hypothetical protein	NA	NA	NA	NA
WP_032187681.1\|86658_86871_+	hypothetical protein	NA	NA	NA	NA
WP_063122717.1\|86983_89215_+	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	0.0e+00	84.9
WP_063085645.1\|89310_90546_+	AAA domain-containing protein	J9Q733	Salmonella_phage	3.7e-236	98.5
WP_064674289.1\|90726_94245_+	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	98.5
90976:90991	attR	NA	NA	NA	NA
WP_049885240.1\|94273_94834_-	DNA-binding protein	J9Q7G7	Salmonella_phage	1.1e-78	85.0
WP_053292493.1\|94943_95375_+	hypothetical protein	J9Q6I8	Salmonella_phage	5.8e-72	98.6
WP_064674288.1\|95494_96511_+	hypothetical protein	J9Q7Z3	Salmonella_phage	4.4e-163	98.7
WP_023135728.1\|96571_97516_+	exonuclease	J9Q7S6	Salmonella_phage	2.0e-181	99.0
WP_000920226.1\|97515_97782_+	hypothetical protein	J9Q7G8	Salmonella_phage	1.6e-40	100.0
WP_064674287.1\|97784_100124_+	recombinase RecA	J9Q736	Salmonella_phage	6.0e-30	87.8
WP_064674286.1\|100426_103504_-	DEAD/DEAH box helicase	A0A2K5B2C2	Erysipelothrix_phage	3.5e-126	33.0
WP_157705174.1\|103982_104933_-	hypothetical protein	A0A2K5B255	Erysipelothrix_phage	2.3e-60	43.6
WP_023315979.1\|105007_105694_-	DUF4391 domain-containing protein	NA	NA	NA	NA
WP_064674285.1\|105697_109030_-	helicase	A0A2K5B2B9	Erysipelothrix_phage	1.1e-239	41.9
WP_023135696.1\|109538_109814_+	hypothetical protein	J9Q738	Salmonella_phage	1.1e-44	91.2
WP_023135695.1\|109853_110033_+	hypothetical protein	J9Q6J1	Salmonella_phage	1.6e-15	81.4
WP_023135694.1\|110029_110365_+	hypothetical protein	J9Q7Z5	Salmonella_phage	4.5e-48	84.5
WP_063122723.1\|110364_110577_+	hypothetical protein	J9Q7S8	Salmonella_phage	9.9e-33	94.3
WP_033545611.1\|111227_112283_-	replication protein RepA	J9Q7H0	Salmonella_phage	4.4e-174	92.1
WP_023135693.1\|113025_113670_+	hypothetical protein	J9Q739	Salmonella_phage	1.4e-122	98.6
WP_032187693.1\|115197_116283_+	exonuclease	J9Q7S9	Salmonella_phage	2.5e-204	97.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP044301

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

85 : 56492

Bacillus_phage(22.22%)

transposase,integrase

attL 3215:3231|attR 71599:71615

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000935452.1\|85_1390_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_001067855.1\|1436_2141_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_011264039.1\|2213_2453_+	macrolide transporter	A0A2K5B2B5	Erysipelothrix_phage	9.5e-08	46.2
WP_054377175.1\|2598_3462_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	2.5e-05	31.0
3215:3231	attL	NA	NA	NA	NA
WP_001354008.1\|3499_3745_+	hypothetical protein	NA	NA	NA	NA
WP_000095725.1\|7521_8781_-	chloramphenicol efflux MFS transporter CmlA1	S4TR35	Salmonella_phage	4.8e-26	31.7
WP_001206356.1\|9042_9834_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_001336345.1\|9839_10130_-	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001083725.1\|10241_10739_-	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_000845039.1\|10883_11897_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000844627.1\|14405_14648_+\|transposase	transposase	NA	NA	NA	NA
WP_021536379.1\|14679_15357_-	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_001493765.1\|15435_16635_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000058717.1\|16666_17551_-	EamA family transporter	NA	NA	NA	NA
WP_001351729.1\|17688_18081_-	cysteine hydrolase	NA	NA	NA	NA
WP_012477564.1\|19969_20560_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_001493762.1\|20696_21269_+	recombinase family protein	M9Q1K0	Clostridium_phage	3.4e-19	39.4
WP_001493761.1\|21305_22697_+\|transposase	ISKra4-like element ISKpn19 family transposase	NA	NA	NA	NA
WP_034167712.1\|22928_23336_-	hypothetical protein	NA	NA	NA	NA
WP_032482496.1\|23397_23595_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_032482493.1\|26054_27026_-\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	2.4e-49	38.1
WP_000336323.1\|28321_28489_-	conjugal transfer protein	D0R0F6	Streptococcus_phage	1.6e-14	68.0
WP_025989258.1\|28605_30525_-	tetracycline resistance ribosomal protection protein Tet(M)	A0A2K5B2A5	Erysipelothrix_phage	0.0e+00	96.4
WP_012386611.1\|30540_30627_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_001235713.1\|33256_33814_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_001067858.1\|34260_34965_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_157705175.1\|35050_35731_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-10	31.9
WP_000758221.1\|38573_39014_-	hypothetical protein	NA	NA	NA	NA
WP_001398209.1\|42136_43429_-	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_001246155.1\|43542_43896_-	cation efflux system protein CusF	NA	NA	NA	NA
WP_038988996.1\|43923_45309_-	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_000697965.1\|45498_46179_+	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	1.2e-31	36.0
WP_000555737.1\|46171_47647_+	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_000790483.1\|47897_48329_+	silver-binding protein SilE	NA	NA	NA	NA
WP_000694953.1\|48472_48823_+	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	1.9e-20	54.3
WP_001372261.1\|49210_50119_-	HNH endonuclease	NA	NA	NA	NA
WP_011251353.1\|50756_51731_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_000796235.1\|52661_53333_+	hypothetical protein	NA	NA	NA	NA
WP_022631000.1\|53352_54141_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.5e-52	92.0
WP_001326966.1\|54198_54390_-	hypothetical protein	NA	NA	NA	NA
WP_001254932.1\|55340_56492_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
71599:71615	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage