Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP046726 Lactobacillus plantarum strain 8P-A3 chromosome, complete genome 3 crisprs csa3,DinG,cas3,DEDDh 5 1 7 0
NZ_CP046727 Lactobacillus plantarum strain 8P-A3 plasmid p8P-A3, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP046726
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046726_1 1133127-1133353 Orphan NA
4 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046726_2 2626894-2627119 Orphan NA
2 spacers
csa3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046726_3 2804888-2804973 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP046726_1 1.2|1133201|28|NZ_CP046726|PILER-CR 1133201-1133228 28 NZ_CP046726.1 1133099-1133126 0 1.0
NZ_CP046726_1 1.3|1133252|28|NZ_CP046726|PILER-CR 1133252-1133279 28 NZ_CP046726.1 1133354-1133381 0 1.0
NZ_CP046726_1 1.4|1133303|28|NZ_CP046726|PILER-CR 1133303-1133330 28 NZ_CP046726.1 1133099-1133126 0 1.0
NZ_CP046726_2 2.1|2626952|26|NZ_CP046726|PILER-CR 2626952-2626977 26 NZ_CP046726.1 2626868-2626893 0 1.0
NZ_CP046726_1 1.1|1133150|28|NZ_CP046726|PILER-CR 1133150-1133177 28 NZ_CP046726.1 1133354-1133381 1 0.964
NZ_CP046726_1 1.3|1133252|28|NZ_CP046726|PILER-CR 1133252-1133279 28 NZ_CP046726.1 1133048-1133075 1 0.964
NZ_CP046726_1 1.1|1133150|28|NZ_CP046726|PILER-CR 1133150-1133177 28 NZ_CP046726.1 1133048-1133075 2 0.929

1. spacer 1.2|1133201|28|NZ_CP046726|PILER-CR matches to position: 1133099-1133126, mismatch: 0, identity: 1.0

taacagtgccaagagtattaatcaagcg	CRISPR spacer
taacagtgccaagagtattaatcaagcg	Protospacer
****************************

2. spacer 1.3|1133252|28|NZ_CP046726|PILER-CR matches to position: 1133354-1133381, mismatch: 0, identity: 1.0

cagtagtgcgaaaaatactagtcagaca	CRISPR spacer
cagtagtgcgaaaaatactagtcagaca	Protospacer
****************************

3. spacer 1.4|1133303|28|NZ_CP046726|PILER-CR matches to position: 1133099-1133126, mismatch: 0, identity: 1.0

taacagtgccaagagtattaatcaagcg	CRISPR spacer
taacagtgccaagagtattaatcaagcg	Protospacer
****************************

4. spacer 2.1|2626952|26|NZ_CP046726|PILER-CR matches to position: 2626868-2626893, mismatch: 0, identity: 1.0

cattcaatgttccaagcccattagta	CRISPR spacer
cattcaatgttccaagcccattagta	Protospacer
**************************

5. spacer 1.1|1133150|28|NZ_CP046726|PILER-CR matches to position: 1133354-1133381, mismatch: 1, identity: 0.964

cagtagtacgaaaaatactagtcagaca	CRISPR spacer
cagtagtgcgaaaaatactagtcagaca	Protospacer
*******.********************

6. spacer 1.3|1133252|28|NZ_CP046726|PILER-CR matches to position: 1133048-1133075, mismatch: 1, identity: 0.964

cagtagtgcgaaaaatactagtcagaca	CRISPR spacer
cagtagtgcgaaaaatactagtcaggca	Protospacer
*************************.**

7. spacer 1.1|1133150|28|NZ_CP046726|PILER-CR matches to position: 1133048-1133075, mismatch: 2, identity: 0.929

cagtagtacgaaaaatactagtcagaca	CRISPR spacer
cagtagtgcgaaaaatactagtcaggca	Protospacer
*******.*****************.**

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP046726_2 2.1|2626952|26|NZ_CP046726|PILER-CR 2626952-2626977 26 AP014283 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S23-C59, *** SEQUENCING IN PROGRESS *** 15532-15557 4 0.846

1. spacer 2.1|2626952|26|NZ_CP046726|PILER-CR matches to AP014283 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S23-C59, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 4, identity: 0.846

cattcaatgttccaagcccattagta	CRISPR spacer
cattaaatgttccatgcccattaaaa	Protospacer
**** ********* ********. *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 37991 : 55022 20 Lactococcus_phage(27.27%) tail,head,terminase,capsid,integrase,portal attL 31918:31931|attR 41480:41493
DBSCAN-SWA_2 333163 : 379423 45 Bacillus_virus(50.0%) protease,bacteriocin NA
DBSCAN-SWA_3 556203 : 604472 59 Lactobacillus_phage(43.48%) tail,tRNA,terminase,capsid,integrase,protease,portal attL 550958:550972|attR 577074:577088
DBSCAN-SWA_4 628518 : 637142 11 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_5 1258583 : 1366070 100 Lactobacillus_phage(82.14%) tail,holin,head,terminase,tRNA,capsid,integrase,transposase,protease,portal attL 1251395:1251412|attR 1357725:1357742
DBSCAN-SWA_6 2222205 : 2258281 42 Oenococcus_phage(43.33%) tail,holin,terminase,protease,portal NA
DBSCAN-SWA_7 2456738 : 2465252 9 Synechococcus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage