CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046737	Vibrio cholerae strain 2015V-1126 chromosome 1, complete sequence	1 crisprs	DEDDh,cas3,WYL,DinG,csx1,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3	0	18	5	0
NZ_CP046738	Vibrio cholerae strain 2015V-1126 chromosome 2, complete sequence	0 crisprs	cas3,csa3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046737_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046737_1

2326864-2329211

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
TGTCTTCCCCACGCAGGTGGGGGTGTTTCC	PILER-CR
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CRISPRCasFinder
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CRT

38 spacers

cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP046737_1

>merge|NZ_CP046737|1|2326864-2329211|PILER-CR,CRISPRCasFinder,CRT
TGTCTTCCCCACGCAGGTGGGGGTGTTTCCAGATAGCCAGCGCTTGACGCTTTTAGCTCAATGTCTTCCCCACGCAGGTGGGGGTGTTTCTAACGCTGATTTAGTTGAAATCATGGAGATTTTGTCTTCCCCACGCAGGTGGGGGTGTTTCCTCAAACGTACAGATGATCTCATTAACTATTGCGTCTTCCCCACGCAGGTGGGGGTGTTTCTAAAAGGAATCTCATTTTCCACTGACACCCCAGGTCTTCCCCACGCAGGTGGGGGTGTTTCTCAATCAATCAGCTACAGAACAGCACAACCCAAGTCTTCCCCACGCAGGTGGGGGTGTTTCTGCGTTTATCAAAGGCTACTCGCCCCGGTCTGAGTCTTCCCCACGCAGGTGGGGGTGTTTCTATGCACGTAGCCACAGCCGGAGAACTGATTGAGTCTTCCCCACGCAGGTGGGGGTGTTTCTCAAAGCCGCTGAGATGCTGAAGAACGAGCTGTGTCTTCCCCACGCAGGTGGGGGTGTTTCTCAAGTATGCAGAAGCGAATCTCATTAAGGATGGTCTTCCCCACGCAGGTGGGGGTGTTTCTATGTTTGGCAATGGTCCTGAGTTTGACAACGTGTCTTCCCCACGCAGGTGGGGGTGTTTCCCACTCCCACCCCAGAAAATCATCTGGCAGGGAGTCTTCCCCACGCAGGTGGGGGTGTTTCTGGCTGATTAATGGAAACTCCGTAATCAACATTGTCTTCCCCACGCAGGTGGGGGTGTTTCCTCGATGCGACCACTTGCCCACTTGGTGACGCTGTCTTCCCCACGCAGGTGGGGGTGTTTCTCGATATATCCGCAGACAACGCCAATGTCTTTCGTCTTCCCCACGCAGGTGGGGGTGTTTCCGGGGTGGATAAGTAAAGGCAGCGTTAAAATAAGTCTTCCCCACGCAGGTGGGGGTGTTTCTAAGCTGCTTGATCGCCGGACATTCATCAATAAGTCTTCCCCACGCAGGTGGGGGTGTTTCTCACAAGCGATTGAAGCAGGAAGAAAGGCGGGAGTCTTCCCCACGCAGGTGGGGGTGTTTCTGATACCCGCAGGCTGGTGCAGCTTTTCAGCTTGTCTTCCCCACGCAGGTGGGGGTGTTTCTCATAGAGATGGCTCTGGCCGATTTCAGCCGTTGTCTTCCCCACGCAGGTGGGGGTGTTTCTAAAAATGAAGGGCTTGCCGAAGGATGCAGAAGGTCTTCCCCACGCAGGTGGGGGTGTTTCTACAAAGTAGCACCGGGTGTGGTGTACGTGGGCGTCTTCCCCACGCAGGTGGGGGTGTTTCCGCAGCCTAACCGCTGCGTTTCTTTTTGCCTGCGTCTTCCCCACGCAGGTGGGGGTGTTTCTATATTCCGCGCCAAGCTGTCGAGCGATTCAAAGTCTTCCCCACGCAGGTGGGGGTGTTTCTCCCCCATCACAATCAATTGATTTAGCTTTGCTGTCTTCCCCACGCAGGTGGGGGTGTTTCCAACCGATTTGACGACATGCCGCACGCCAGTGAGTCTTCCCCACGCAGGTGGGGGTGTTTCCAAACGCACCGGAGAGGTGGAAGTGTTGCCCGAGTCTTCCCCACGCAGGTGGGGGTGTTTCTAAGCATATTCAGCCTTTAGCTATCCATAATTCGTCTTCCCCACGCAGGTGGGGGTGTTTCTGACGGGACCGACCCCTTGCCCTTTGATGAGCAGTCTTCCCCACGCAGGTGGGGGTGTTTCTTGTTATCAACTTGCCGGATAAAACGGACAATAGTCTTCCCCACGCAGGTGGGGGTGTTTCTCGCCAGAGAGTAAGACGCTTGGCCGCAGTAAGGTCTTCCCCACGCAGGTGGGGGTGTTTCCTGTTTACCGCGTGTTACGATATCCCCTGTCACGTCTTCCCCACGCAGGTGGGGGTGTTTCCCTTCAAACCTCAGCTGCCGCCATATTGCGCTGGTCTTCCCCACGCAGGTGGGGGTGTTTCCTCATTCGAGAGTGGGACGCTTCACAGCCAACAGTCTTCCCCACGCAGGTGGGGGTGTTTCTACAGTAATCATCGGCAAGGTAAACCAACCTTAGTCTTCCCCACGCAGGTGGGGGTGTTTCCGTTTAAACAGCTTTGATATTGCGGACATCACCGTCTTCCCCACGCAGGTGGGGGTGTTTCTATGGCCGCAGCCTTGAATAAATCGTCCTTGTTGTCTTCCCCACGCAGGTGGGGGTGTTTCTGATAACTCAGCTTTTGGAGCTGTCTTTCCCGAGTCTTCCCCACGCAGGTGGGGGGTGTTTCCTCTTTAATCGAATTCCATAACGGTGACGTTAAGTCTTCCCCACGCAGGTTGGATTACAGA

>NZ_CP046737|1|1|2326864-2327015|PILER-CR
TGTCTTCCCCACGCAGGTGGGGGTGTTTCC	AGATAGCCAGCGCTTGACGCTTTTAGCTCAA
TGTCTTCCCCACGCAGGTGGGGGTGTTTCT	AACGCTGATTTAGTTGAAATCATGGAGATTT
TGTCTTCCCCACGCAGGTGGGGGTGTTTCC

>NZ_CP046737|1|1|2326865-2329211|CRISPRCasFinder
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CAGATAGCCAGCGCTTGACGCTTTTAGCTCAAT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TAACGCTGATTTAGTTGAAATCATGGAGATTTT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CTCAAACGTACAGATGATCTCATTAACTATTGC
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TAAAAGGAATCTCATTTTCCACTGACACCCCAG
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TCAATCAATCAGCTACAGAACAGCACAACCCAA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TGCGTTTATCAAAGGCTACTCGCCCCGGTCTGA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TATGCACGTAGCCACAGCCGGAGAACTGATTGA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TCAAAGCCGCTGAGATGCTGAAGAACGAGCTGT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TCAAGTATGCAGAAGCGAATCTCATTAAGGATG
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TATGTTTGGCAATGGTCCTGAGTTTGACAACGT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CCACTCCCACCCCAGAAAATCATCTGGCAGGGA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TGGCTGATTAATGGAAACTCCGTAATCAACATT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CTCGATGCGACCACTTGCCCACTTGGTGACGCT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TCGATATATCCGCAGACAACGCCAATGTCTTTC
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CGGGGTGGATAAGTAAAGGCAGCGTTAAAATAA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TAAGCTGCTTGATCGCCGGACATTCATCAATAA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TCACAAGCGATTGAAGCAGGAAGAAAGGCGGGA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TGATACCCGCAGGCTGGTGCAGCTTTTCAGCTT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TCATAGAGATGGCTCTGGCCGATTTCAGCCGTT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TAAAAATGAAGGGCTTGCCGAAGGATGCAGAAG
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TACAAAGTAGCACCGGGTGTGGTGTACGTGGGC
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CGCAGCCTAACCGCTGCGTTTCTTTTTGCCTGC
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TATATTCCGCGCCAAGCTGTCGAGCGATTCAAA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TCCCCCATCACAATCAATTGATTTAGCTTTGCT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CAACCGATTTGACGACATGCCGCACGCCAGTGA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CAAACGCACCGGAGAGGTGGAAGTGTTGCCCGA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TAAGCATATTCAGCCTTTAGCTATCCATAATTC
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TGACGGGACCGACCCCTTGCCCTTTGATGAGCA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TTGTTATCAACTTGCCGGATAAAACGGACAATA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TCGCCAGAGAGTAAGACGCTTGGCCGCAGTAAG
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CTGTTTACCGCGTGTTACGATATCCCCTGTCAC
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CCTTCAAACCTCAGCTGCCGCCATATTGCGCTG
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CTCATTCGAGAGTGGGACGCTTCACAGCCAACA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TACAGTAATCATCGGCAAGGTAAACCAACCTTA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CGTTTAAACAGCTTTGATATTGCGGACATCACC
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TATGGCCGCAGCCTTGAATAAATCGTCCTTGTT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TGATAACTCAGCTTTTGGAGCTGTCTTTCCCGA
GTCTTCCCCACGCAGGTGGGGGGTGTTT	CCTCTTTAATCGAATTCCATAACGGTGACGTTAA
GTCTTCCCCACGCAGGTTGGATTACAGA

>NZ_CP046737|1|1|2326865-2329211|CRT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CAGATAGCCAGCGCTTGACGCTTTTAGCTCAAT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TAACGCTGATTTAGTTGAAATCATGGAGATTTT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CTCAAACGTACAGATGATCTCATTAACTATTGC
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TAAAAGGAATCTCATTTTCCACTGACACCCCAG
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TCAATCAATCAGCTACAGAACAGCACAACCCAA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TGCGTTTATCAAAGGCTACTCGCCCCGGTCTGA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TATGCACGTAGCCACAGCCGGAGAACTGATTGA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TCAAAGCCGCTGAGATGCTGAAGAACGAGCTGT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TCAAGTATGCAGAAGCGAATCTCATTAAGGATG
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TATGTTTGGCAATGGTCCTGAGTTTGACAACGT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CCACTCCCACCCCAGAAAATCATCTGGCAGGGA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TGGCTGATTAATGGAAACTCCGTAATCAACATT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CTCGATGCGACCACTTGCCCACTTGGTGACGCT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TCGATATATCCGCAGACAACGCCAATGTCTTTC
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CGGGGTGGATAAGTAAAGGCAGCGTTAAAATAA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TAAGCTGCTTGATCGCCGGACATTCATCAATAA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TCACAAGCGATTGAAGCAGGAAGAAAGGCGGGA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TGATACCCGCAGGCTGGTGCAGCTTTTCAGCTT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TCATAGAGATGGCTCTGGCCGATTTCAGCCGTT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TAAAAATGAAGGGCTTGCCGAAGGATGCAGAAG
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TACAAAGTAGCACCGGGTGTGGTGTACGTGGGC
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CGCAGCCTAACCGCTGCGTTTCTTTTTGCCTGC
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TATATTCCGCGCCAAGCTGTCGAGCGATTCAAA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TCCCCCATCACAATCAATTGATTTAGCTTTGCT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CAACCGATTTGACGACATGCCGCACGCCAGTGA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CAAACGCACCGGAGAGGTGGAAGTGTTGCCCGA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TAAGCATATTCAGCCTTTAGCTATCCATAATTC
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TGACGGGACCGACCCCTTGCCCTTTGATGAGCA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TTGTTATCAACTTGCCGGATAAAACGGACAATA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TCGCCAGAGAGTAAGACGCTTGGCCGCAGTAAG
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CTGTTTACCGCGTGTTACGATATCCCCTGTCAC
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CCTTCAAACCTCAGCTGCCGCCATATTGCGCTG
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CTCATTCGAGAGTGGGACGCTTCACAGCCAACA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TACAGTAATCATCGGCAAGGTAAACCAACCTTA
GTCTTCCCCACGCAGGTGGGGGTGTTTC	CGTTTAAACAGCTTTGATATTGCGGACATCACC
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TATGGCCGCAGCCTTGAATAAATCGTCCTTGTT
GTCTTCCCCACGCAGGTGGGGGTGTTTC	TGATAACTCAGCTTTTGGAGCTGTCTTTCCCGA
GTCTTCCCCACGCAGGTGGGGGGTGTTT	CCTCTTTAATCGAATTCCATAACGGTGACGTTAA
GTCTTCCCCACGCAGGTTGGATTACAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046737.1\|WP_001145803.1\|2333989_2334877_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NZ_CP046737.1\|WP_000141836.1\|2331006_2331228_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225848
NZ_CP046737.1\|WP_000462885.1\|2332561_2332858_-\|DNA-binding-transcriptional-regulator-Fis	unknown	unknown	gnl\|CDD\|179020
NZ_CP046737.1\|WP_000961188.1\|2332881_2333877_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|182440
NZ_CP046737.1\|WP_085604778.1\|2323242_2323890_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|187858
NZ_CP046737.1\|WP_123012614.1\|2323911_2324955_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP046737.1\|WP_123012724.1\|2317231_2318215_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP046737.1\|WP_001912164.1\|2331527_2331929_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046737.1\|WP_000973003.1\|2329323_2330019_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046737.1\|WP_000333273.1\|2324958_2325675_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP046737.1\|WP_111674039.1\|2322689_2323250_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP046737.1\|WP_123012612.1\|2315990_2317226_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271182
NZ_CP046737.1\|WP_000354613.1\|2336443_2336905_-\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	unknown	unknown	gnl\|CDD\|235777
NZ_CP046737.1\|WP_000125077.1\|2331227_2331461_-\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|283558
NZ_CP046737.1\|WP_123012725.1\|2318636_2321150_+\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP046737.1\|WP_085604895.1\|2335085_2336429_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|236307
NZ_CP046737.1\|WP_001907124.1\|2326530_2326821_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|233610
NZ_CP046737.1\|WP_032481615.1\|2330203_2330854_-\|inovirus-type-Gp2-protein	unknown	unknown	gnl\|CDD\|371695
NZ_CP046737.1\|WP_123012613.1\|2321152_2322676_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl\|CDD\|187860
NZ_CP046737.1\|WP_001051767.1\|2325677_2326553_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693

Protein	Function_ID	Function_description	E-value
NZ_CP046737.1\|WP_001145803.1\|2333989_2334877_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	2.91024e-152
NZ_CP046737.1\|WP_000141836.1\|2331006_2331228_-\|hypothetical-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	1.1065e-06
NZ_CP046737.1\|WP_000462885.1\|2332561_2332858_-\|DNA-binding-transcriptional-regulator-Fis	gnl\|CDD\|179020	PRK00430, fis, DNA-binding transcriptional regulator Fis.	1.10625e-52
NZ_CP046737.1\|WP_000961188.1\|2332881_2333877_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|182440	PRK10415, PRK10415, tRNA-dihydrouridine synthase B; Provisional.	0
NZ_CP046737.1\|WP_085604778.1\|2323242_2323890_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	5.26305e-60
NZ_CP046737.1\|WP_123012614.1\|2323911_2324955_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	9.3134e-114
NZ_CP046737.1\|WP_123012724.1\|2317231_2318215_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	5.12928e-46
NZ_CP046737.1\|WP_000333273.1\|2324958_2325675_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	9.33191e-53
NZ_CP046737.1\|WP_111674039.1\|2322689_2323250_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.25916e-33
NZ_CP046737.1\|WP_123012612.1\|2315990_2317226_+\|site-specific-integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	5.23029e-46
NZ_CP046737.1\|WP_000354613.1\|2336443_2336905_-\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	1.99542e-80
NZ_CP046737.1\|WP_000125077.1\|2331227_2331461_-\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|283558	pfam05930, Phage_AlpA, Prophage CP4-57 regulatory protein (AlpA). This family consists of several short bacterial and phage proteins which are related to the E. coli protein AlpA. AlpA suppress two phenotypes of a delta lon protease mutant, overproduction of capsular polysaccharide and sensitivity to UV light. Several of the sequences in this family are thought to be DNA-binding proteins.	3.73556e-14
NZ_CP046737.1\|WP_123012725.1\|2318636_2321150_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.60356e-81
NZ_CP046737.1\|WP_085604895.1\|2335085_2336429_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|236307	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated.	0
NZ_CP046737.1\|WP_001907124.1\|2326530_2326821_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|233610	TIGR01873, CRISPR-associated_endoribonuclease_Cas2, CRISPR-associated endoribonuclease Cas2, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.	1.85389e-29
NZ_CP046737.1\|WP_032481615.1\|2330203_2330854_-\|inovirus-type-Gp2-protein	gnl\|CDD\|371695	pfam11726, Inovirus_Gp2, Inovirus Gp2. Isoform G2P plays an essential role in viral DNA replication; it binds to the origin of replication and cleaves the dsDNA replicative form I (RFI) and becomes covalently bound to it via phosphotyrosine bond, generating the dsDNA replicative form II (RFII).	8.4855e-10
NZ_CP046737.1\|WP_123012613.1\|2321152_2322676_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	8.6777e-90
NZ_CP046737.1\|WP_001051767.1\|2325677_2326553_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	7.89487e-119

>NZ_CP046737.1|WP_001907124.1|2326530_2326821_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MLVVLANDLPPAVRGRMKLWFVEPRANVFVSGVKDSVAVTVVDYLMQHCPAESGLMLFRSIPDPPGYEIRYKGEVRKPVIQLSGLQLIVETLILSK
>NZ_CP046737.1|WP_001051767.1|2325677_2326553_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MAKGERLFVKVTRESLPQVKDKYPFIYLERGRLEIDDSSVKWIDADANIVPIPVATINTLLLGPGTSVTHDAIKTATAANCSISWVGEDSLLFYAAGFLPTADTRNLKKQMLLAASEESALKVARMMFAKRFPDADLEDKTLKSMMGMEGNRVKALYQQKAEQYGVGWRGRQFTPGKFSLSDLTNQIMTASNAALYGILCSAIHSMGYSPHIGFIHSGSPLPFVYDMADLYKEHLCIDLAFSLTRDMAGHYDKHKVSDAFRKRVISMDLLQQVSSDINELMGGGNARRTSK
>NZ_CP046737.1|WP_000333273.1|2324958_2325675_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MCEKNAYLLLWLEGPLQAWGHDSKFGVRNTLNFPTRSGILGLLCCARGAGGEQREWLEKMSPMAMEVLAFERSDAEGEPIMREATLRDFHMVGSGYDDADPWQNLLIPKTAQGKKPNGAGTKMTYRYYLQDALFAVILEIPADDKEALEDALQNPRWDLYLGRKNCVPTELIYQGVYHSTETARQRAQELAENKCRHLSYTIVEGEQEGGEVFTLNDVPVQFGVSKRYRDRRVTLLEH
>NZ_CP046737.1|WP_123012614.1|2323911_2324955_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MNHTLKNTRIEFHILQSFPVTCLNRDDVGAPKSAIVGGVSRARVSSQCWKRQVRLAMSEFGIQLGVRSKKVAALLQQHCLSLGASEDQANACGEVMAGFFADDTLLFISDSEAKAFAAYAQEKEFDAKSLKDKELVKVAKKVVNKTLDALDIALFGRMVAKAAEMNVEAAASFAHAISTHKVSNELEFFTAVDDHKSEEESGSAHMGTLEYNSATYYRYVSLDLGQLQQTLGDDADLSTALEAFVKALYIAVPNARQTTQSGACPWEYARVLVRKGQRLQASFEQPVRAAGEGYLLPSKKALQSWLEQREKLSGSLFAKQGDYEWGDDLDYSIDHLIADLQSHLMVR
>NZ_CP046737.1|WP_085604778.1|2323242_2323890_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MSELFASALHLDRRAVKALKITDAYSLHRVVYSLFPDVRTPEEKGGHTQSGIVYADQGGDFHGRKVLVVSDRMPNARVDGVHGEVVSKTISEAFLHHQTYRFKVQVNPVRKDKQSGKRIAVKGRQDIAQWFIERAAKSWGFEVHPQHLQIDSIEVQQFNDKHGRKITLGKAHIQGQLRVTNAPQFHHSFKHGIGKGRAFGCGLLQIVPIIENPFA
>NZ_CP046737.1|WP_111674039.1|2322689_2323250_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MDNNPVVTRDSAVAQTSKTGRFIAYVIERIQKNKGFAARLKRADNQTTEYQSWELLASFDVDLEKEWERLPYCIVGAALAKAKPKSNGHLTLGQAIAACYDDGNQSEQAKARLRRLLACSSSTEVCRILRPLLTLIESKGVALNYHQLLEQLLWYHGKAQDSIRARWAQDFYRRSASTQAHEVNYE
>NZ_CP046737.1|WP_123012613.1|2321152_2322676_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MENCFNLIDEPWIPVTNAGLVSLREIFLNNALRSLGGNPVQKIALTKLLLAIAQSAATPEDDEDWRRMGYLGMADKCLSYLDQWHNRFYLYGNMPFLQMPAIQSAEVKSFGVLSPEVSTGNTTVLTESQQEQAHSDADKALLLVVQMAFGLSGKKTDNSVVLSPGYQGKYNDKGKAASGKAGSAVGHMGLLHSFWLAESVVESLWLNLLTQEDIGDLPMYSILGTAPWELMPSGEADSVAEALKTSLMGRLVPLGKFCLLTDNGIHYSDGIAHPSYLEGKADPSASVDFSQKKPKALWVNPDKRPWRELTALLQFIESGKSIGYETPQLARTIRRVKYGVESFAIWSGGLRVSSNAGEQYASGTDDYVQSEFWLLSSELGDSFLAQLKQEMSELNALQKTLWGAVVRYFRQLSDIDKSSAGKAQPFVANQAERATHLFWQLCERQAQALLDACNDDIDAKIERQRLRKIFAGYALRVFDQVCPNDSTRQLDAWAQSRPNYHQYLNVE
>NZ_CP046737.1|WP_123012725.1|2318636_2321150_+|CRISPR-associated-helicase-Cas3'
MIPGRNVPEHCQIVGEIAKVLIQRFPPAIQRILFPVGSELAAACHDIGKVSPTFVAKIFKACGIDTQTLPALANVNPSLESQWGGHAGVSQATAEEIMAPKYVAHILGQHHGFSPSGVDDKRGNAAVFGGESWFEERRKLVNHLKEVLNTEWPKFERAEQARVVAGLTSVADWIGSGSFFEDPTQAWKPNVIKALNCAGFITPSIIKDLSFTDIFDPAKRNMKPREAQIQFVNQVTGPGVYVLEAQMGMGKTEAALYAAYRLLAEAKATGIYFALPTQLTSNKIYDRFNSFLEQIIAAETPNSAMLLHSGAWLLKQADMGEEGSPGGAWFNHNKRGLLAPFAVGTIDQALMAVMNVKHGFVRAFGLAGKVVILDEVHSYDLYTGTILNELVAFLRQIGCTVIILSATLSPARRHSLLQQRTSSSEYPLITALHNDRDSPSEVAIPCVDGAKVELTHCSNDLQAIEEAINRAAMGQQVLWIENTVADAQQRYLDMASRGVGLGCEVGLLHSRFTPQDREKNEQHWVSLFGKAGWSQRRQCGRILIGTQVLEQSIDIDADFLITQFAPTDMLLQRIGRLWRHLDAPRATSARCECWLLAPNLEQALSSPSSAFGLSAMVYSPYVLCRSLEVWLGLSHLALPSSIRPLIDQTYCERDESAQWAFLLHQLKAGSRYKTGEKALQALAKITLAKAGKTLPEHKADTRYSDQDTYEVLLLRAIRTSKGHTYIRLLDNRELILPHARYQLSKAQWRELAVELHQSLVKVSPKNCPDKISKHQLEQLHLHHVFYLGNPEEDEALLRIALVSPVGELLTLDGRRASDKYQLEYRHDLGYRVIVQKE
>NZ_CP046737.1|WP_123012724.1|2317231_2318215_+|Fic-family-protein
MSYQPPYTITNQILSLVAQISECLGRLSVNCASPRELKLRKVNRVRTIQGSLAIEGNELTQEQITALLNGKRILAPKKQVQEALNAINVYQELNSWSSHREVDLLQAHEVLMIGLQSMIGRYRMDGVGVFKDGQVLHMAPPAERVPKLMSELFHWLANDNSHPLIRSCVFHYEFEFIHPFSDGNGRMGRLWQTLILSEWNPLFAHLPVESFIYENQQAYYDAINRSTLKADSEPFIAFMLQMILNALQETEATTPQDAPQVTPQVKQLLDVLEGEMLREEIQAMLGLKDRKSFRDRYLKPALEAGLIEMTLPDKPTSKVQRYRKRGV
>NZ_CP046737.1|WP_123012612.1|2315990_2317226_+|site-specific-integrase
MGKLYDKHLKAVLNKSHLKVFTLTDGDGLGARVSLQGNVRWQFRYKINGASKRVDLGDYPDLSLLKAREEAQKCREWLAEGHDPKLQRSVIRQETLKPVSVQDALEYWLVEYAESNRANADKHRSQFQKHIYPYIGALPLAQTETHHWIECFDRVRKGIAGKQRPAPVAAGYVLQNAKQALRFCRVRRYATSRVLDDLTVNDVGKKQRKKDRVLTAQELSDLWNAVQTPNKFLPYYCHLVKFLVVFGARTQEVRLSKWKEWDFEALIWTVPKEHSKTDEKIIRPIPDELVPWLLQLKADSDKETLILGEEKSPETVSQQGRFFWQRLGHEEAWTLHDIRRTLATRLNELGVAPYVVEQLLGHSLGGVMAIYNRSQYLPEKREALTMWIEHLDIITNKTNNVTSMISSKRTA
>NZ_CP046737.1|WP_000973003.1|2329323_2330019_+|hypothetical-protein
MMILLQGYLLGAALVACGLLWVMVRHLDKHDWQWDKGDIWFHFVFMVLFWPLMLFGWVKQGRPNWADWLKPTANRADYYREMERAYRELKTCGAYVSYKPKPEGICDNSYGEFIFPSALLEKQLIERLRQSPHLQGNDEGKLLAWVQSRDESLQEPVDVPPMWSRFSYLADDLIAHNIGLVRCSVCHDEIETGQLQEKSVNLCGRVERKYLCPNGHALLAFELMRFTYSSR
>NZ_CP046737.1|WP_032481615.1|2330203_2330854_-|inovirus-type-Gp2-protein
MRARILLHPTKSKLALYRHGDQVYQIFHRATGVDQNILQSSFDLAKSWRNHYSKFCGVILQLHQNQPSDNNQQLSTFLIKLMQALQKHYNTPNIGYFWVREQSGRDKQHYHLAVLISGHCCQHSGTIDTLANTLWKQQDERNFSYQVKNRIYKVNRYGFDKEWPSLLTRLSYFAKNDTKSRSPSRNSYGRSQLLKTTTQAKTLKNAKVISSSDHFY
>NZ_CP046737.1|WP_000141836.1|2331006_2331228_-|hypothetical-protein
MTFDLSRQCNKAAMPLHIISKKELANLLHVNERTIHRMVKDKRLPEPMRTVGGNNGGWLLTTILEWQKSQKGH
>NZ_CP046737.1|WP_000125077.1|2331227_2331461_-|AlpA-family-phage-regulatory-protein
MTAIEKLTQPNQLSCDRFVREAERRRITAISRSQAWKLEKEGRFPPRIKLGSRSVVWRLSDLTQWLDKQAGQYSEEA
>NZ_CP046737.1|WP_001912164.1|2331527_2331929_-|hypothetical-protein
MFNQSLDEATKKELTILIKQKWAGITSKKPHTNRALDVIIPIAKAFFSHQSSVIVAIGLFVERLVEHVSKMHPTPPALKPLLQRSERKLAEGLRAVLEGGSYCESKSGKGAEILVDQFIASKLIEFYPEPALA
>NZ_CP046737.1|WP_000462885.1|2332561_2332858_-|DNA-binding-transcriptional-regulator-Fis
MFEQNLTSEALTVTTVTSQDQITQKPLRDSVKASLKNYLAQLNGQEVTELYELVLAEVEQPLLDTIMQYTRGNQTRAATMMGINRGTLRKKLKKYGMN
>NZ_CP046737.1|WP_000961188.1|2332881_2333877_-|tRNA-dihydrouridine-synthase-DusB
MLVRSCEDVLKIGNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVHEGESGIRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDVIEDILKAVVNAVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACMYKGEAEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIFQEIQHFLEHGTTMPELPISEVKDIMLGHVTALHQFYGEYLGPRIARKHVSWYLQEHEQASAFRRTFNAIETADQQLDALEGYFDNVAS
>NZ_CP046737.1|WP_001145803.1|2333989_2334877_-|50S-ribosomal-protein-L11-methyltransferase
MPWIQIKLNATNDNAEAIGDMLMEETGAVSVTFLDAKDTPVFEPLPGETRLWGDTDVVALYEADMDTSLILQQIKASNMLAEGFAHKVEQVEDKDWEREWMDNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLEWLDNLDLSGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGVEDQIEVYLPKDQPEGLVADVVVANILAGPLRELSPIIKGLLKPGGQLAMSGILDTQAESVAEFYRDDLELDPIAEKSEWCRISGRKLG
>NZ_CP046737.1|WP_085604895.1|2335085_2336429_-|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MLDKVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLLADESICIGPAKSIDSYLNIPRIISAAEVTGAVAIHPGYGFLSENADFAEQVERSGFIFVGPRAETIRLMGDKVSAINAMKKAGVPCVPGSDGPLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELSKSIQMTRAEAKAAFNNDMVYMEKFLENPRHVEVQVIADGQGNAIHLAERDCSMQRRHQKVVEEAPAPGITEEMRKFIGERCTRACIEIGYRGAGTFEFLYENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSFKQEDIKIRGHAVECRINAEDPERFLPCPGKIERFHAPGGMGVRWESHIYSGYTVPAHYDSMIGKLITYGENRDVAIARMRNALNEMIVEGIKTNIPLQQAIMADENFQKGGTNIHYLEKKLGIK
>NZ_CP046737.1|WP_000354613.1|2336443_2336905_-|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein
MDIRKIKKLIELVEESGIAELEISEGEESVRISRYGQPAPAPQVHYAAAPAPVAAPAPVAQAAAVAEAPAAAKVPAGHKVLSPMVGTFYRSPSPDAKAFIEVGQSVSVGDTLCIVEAMKMMNQIEADKSGVVTAILVEDGQTVEFDQPLVVIE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP046737_1	1.9\|2327259\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327259-2327291	33	NC_022747	Vibrio phage VPUSM 8, complete genome	33676-33708	0	1.0
NZ_CP046737_1	1.9\|2327259\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327259-2327291	33	KX058879	Vibrio phage VcP032, complete genome	32621-32653	0	1.0
NZ_CP046737_1	1.9\|2327259\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327259-2327291	33	AB374228	Vibrio phage kappa proviral DNA, complete genome	32266-32298	0	1.0
NZ_CP046737_1	1.9\|2327259\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327259-2327291	33	AF125163	Bacteriophage K139, complete genome	32620-32652	0	1.0
NZ_CP046737_1	1.9\|2327259\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327259-2327291	33	NC_003313	Vibrio phage K139, complete genome	32620-32652	0	1.0
NZ_CP046737_1	1.9\|2327259\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327259-2327291	33	KU504502	UNVERIFIED: Vibrio phage 919TP, complete genome	32655-32687	0	1.0
NZ_CP046737_1	1.12\|2327442\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327442-2327474	33	MK575466	Vibrio phage Rostov 7, complete genome	10963-10995	0	1.0
NZ_CP046737_1	1.15\|2327625\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327625-2327657	33	NZ_CP049915	Vibrio sp. HDW18 plasmid p_unnamed2, complete sequence	12234-12266	0	1.0
NZ_CP046737_1	1.18\|2327808\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327808-2327840	33	NC_024369	Vibrio phage X29, complete genome	10357-10389	0	1.0
NZ_CP046737_1	1.18\|2327808\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327808-2327840	33	MK575466	Vibrio phage Rostov 7, complete genome	31743-31775	0	1.0
NZ_CP046737_1	1.18\|2327808\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327808-2327840	33	KJ545483	Vibrio phage phi 2, complete genome	10357-10389	0	1.0
NZ_CP046737_1	1.21\|2327991\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327991-2328023	33	LR700236	marine metagenome genome assembly, complete genome: monopartite	5072-5104	0	1.0
NZ_CP046737_1	1.23\|2328113\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328113-2328145	33	AY147032	Bacteriophage Ch457 ORF35 and ORF36 genes, complete cds	595-627	0	1.0
NZ_CP046737_1	1.23\|2328113\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328113-2328145	33	NC_022747	Vibrio phage VPUSM 8, complete genome	29169-29201	0	1.0
NZ_CP046737_1	1.23\|2328113\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328113-2328145	33	KX058879	Vibrio phage VcP032, complete genome	28114-28146	0	1.0
NZ_CP046737_1	1.23\|2328113\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328113-2328145	33	AB374228	Vibrio phage kappa proviral DNA, complete genome	27759-27791	0	1.0
NZ_CP046737_1	1.23\|2328113\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328113-2328145	33	AF125163	Bacteriophage K139, complete genome	28113-28145	0	1.0
NZ_CP046737_1	1.23\|2328113\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328113-2328145	33	AY147033	Bacteriophage E8498 ORF35 and ORF36 genes, complete cds	644-676	0	1.0
NZ_CP046737_1	1.23\|2328113\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328113-2328145	33	NC_003313	Vibrio phage K139, complete genome	28113-28145	0	1.0
NZ_CP046737_1	1.23\|2328113\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328113-2328145	33	KU504502	UNVERIFIED: Vibrio phage 919TP, complete genome	28148-28180	0	1.0
NZ_CP046737_1	1.24\|2328174\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328174-2328206	33	NC_022747	Vibrio phage VPUSM 8, complete genome	34008-34040	0	1.0
NZ_CP046737_1	1.24\|2328174\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328174-2328206	33	AB374228	Vibrio phage kappa proviral DNA, complete genome	32598-32630	0	1.0
NZ_CP046737_1	1.24\|2328174\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328174-2328206	33	AF125163	Bacteriophage K139, complete genome	32952-32984	0	1.0
NZ_CP046737_1	1.24\|2328174\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328174-2328206	33	NC_003313	Vibrio phage K139, complete genome	32952-32984	0	1.0
NZ_CP046737_1	1.24\|2328174\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328174-2328206	33	KU504502	UNVERIFIED: Vibrio phage 919TP, complete genome	32987-33019	0	1.0
NZ_CP046737_1	1.30\|2328540\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328540-2328572	33	NZ_CP049915	Vibrio sp. HDW18 plasmid p_unnamed2, complete sequence	642-674	0	1.0
NZ_CP046737_1	1.8\|2327198\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327198-2327230	33	NC_022747	Vibrio phage VPUSM 8, complete genome	32955-32987	1	0.97
NZ_CP046737_1	1.8\|2327198\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327198-2327230	33	KX058879	Vibrio phage VcP032, complete genome	31900-31932	1	0.97
NZ_CP046737_1	1.8\|2327198\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327198-2327230	33	AB374228	Vibrio phage kappa proviral DNA, complete genome	31545-31577	1	0.97
NZ_CP046737_1	1.8\|2327198\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327198-2327230	33	AF125163	Bacteriophage K139, complete genome	31899-31931	1	0.97
NZ_CP046737_1	1.8\|2327198\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327198-2327230	33	NC_003313	Vibrio phage K139, complete genome	31899-31931	1	0.97
NZ_CP046737_1	1.8\|2327198\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327198-2327230	33	KU504502	UNVERIFIED: Vibrio phage 919TP, complete genome	31934-31966	1	0.97
NZ_CP046737_1	1.12\|2327442\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327442-2327474	33	NC_024369	Vibrio phage X29, complete genome	33994-34026	1	0.97
NZ_CP046737_1	1.12\|2327442\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327442-2327474	33	KJ545483	Vibrio phage phi 2, complete genome	33994-34026	1	0.97
NZ_CP046737_1	1.20\|2327930\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327930-2327962	33	NC_022747	Vibrio phage VPUSM 8, complete genome	31502-31534	1	0.97
NZ_CP046737_1	1.20\|2327930\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327930-2327962	33	KX058879	Vibrio phage VcP032, complete genome	30447-30479	1	0.97
NZ_CP046737_1	1.20\|2327930\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327930-2327962	33	AB374228	Vibrio phage kappa proviral DNA, complete genome	30092-30124	1	0.97
NZ_CP046737_1	1.20\|2327930\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327930-2327962	33	AF125163	Bacteriophage K139, complete genome	30446-30478	1	0.97
NZ_CP046737_1	1.20\|2327930\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327930-2327962	33	NC_003313	Vibrio phage K139, complete genome	30446-30478	1	0.97
NZ_CP046737_1	1.20\|2327930\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327930-2327962	33	KU504502	UNVERIFIED: Vibrio phage 919TP, complete genome	30481-30513	1	0.97
NZ_CP046737_1	1.23\|2328113\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328113-2328145	33	AY147035	Bacteriophage O395 ORF35 and ORF36 genes, complete cds	575-607	1	0.97
NZ_CP046737_1	1.33\|2328723\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328723-2328755	33	NC_019518	Vibrio phage vB_VchM-138, complete genome	38952-38984	1	0.97
NZ_CP046737_1	1.33\|2328723\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328723-2328755	33	MN379461	Vibrio phage Rostov M3 clone NODE_2_length_12308_cov_191.405 genomic sequence	3588-3620	1	0.97
NZ_CP046737_1	1.33\|2328723\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328723-2328755	33	KJ572844	Vibrio phage 24, complete genome	38829-38861	1	0.97
NZ_CP046737_1	1.33\|2328723\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328723-2328755	33	NC_019457	Vibrio phage CP-T1, complete genome	38926-38958	1	0.97
NZ_CP046737_1	1.35\|2328845\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328845-2328877	33	NZ_CP049915	Vibrio sp. HDW18 plasmid p_unnamed2, complete sequence	2855-2887	1	0.97
NZ_CP046737_1	1.24\|2328174\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328174-2328206	33	KX058879	Vibrio phage VcP032, complete genome	32953-32985	2	0.939
NZ_CP046737_1	1.37\|2328967\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328967-2328999	33	NC_022747	Vibrio phage VPUSM 8, complete genome	24581-24613	2	0.939
NZ_CP046737_1	1.37\|2328967\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328967-2328999	33	KX058879	Vibrio phage VcP032, complete genome	23526-23558	2	0.939
NZ_CP046737_1	1.37\|2328967\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328967-2328999	33	AB374228	Vibrio phage kappa proviral DNA, complete genome	23171-23203	2	0.939
NZ_CP046737_1	1.37\|2328967\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328967-2328999	33	AF125163	Bacteriophage K139, complete genome	23525-23557	2	0.939
NZ_CP046737_1	1.37\|2328967\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328967-2328999	33	NC_003313	Vibrio phage K139, complete genome	23525-23557	2	0.939
NZ_CP046737_1	1.37\|2328967\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328967-2328999	33	KU504502	UNVERIFIED: Vibrio phage 919TP, complete genome	23560-23592	2	0.939
NZ_CP046737_1	1.34\|2328784\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328784-2328816	33	NZ_CP049915	Vibrio sp. HDW18 plasmid p_unnamed2, complete sequence	22129-22161	3	0.909
NZ_CP046737_1	1.24\|2328174\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328174-2328206	33	HG803181	Vibrio phage PV94 complete genome	33691-33723	4	0.879
NZ_CP046737_1	1.8\|2327198\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327198-2327230	33	JF974301	Vibrio phage VD1, * SEQUENCING IN PROGRESS *, 5 unordered pieces	38665-38697	5	0.848
NZ_CP046737_1	1.2\|2326955\|31\|NZ_CP046737\|PILER-CR	2326955-2326985	31	AP012539	Stx2-converting phage Stx2a_WGPS6 proviral DNA, complete genome	4275-4305	8	0.742
NZ_CP046737_1	1.2\|2326955\|31\|NZ_CP046737\|PILER-CR	2326955-2326985	31	FM180578	Enterobacteria phage 2851, complete genome	2427-2457	8	0.742
NZ_CP046737_1	1.2\|2326955\|31\|NZ_CP046737\|PILER-CR	2326955-2326985	31	FJ188381	Stx2-converting phage 1717, complete genome	3083-3113	8	0.742
NZ_CP046737_1	1.2\|2326955\|31\|NZ_CP046737\|PILER-CR	2326955-2326985	31	NC_008464	Stx2-converting phage 86, complete genome	41926-41956	8	0.742
NZ_CP046737_1	1.2\|2326955\|31\|NZ_CP046737\|PILER-CR	2326955-2326985	31	NC_011356	Enterobacteria phage YYZ-2008, complete prophage genome	2608-2638	8	0.742
NZ_CP046737_1	1.2\|2326955\|31\|NZ_CP046737\|PILER-CR	2326955-2326985	31	NC_049944	Stx2-converting phage Stx2a_WGPS8 proviral DNA, complete genome	2431-2461	8	0.742
NZ_CP046737_1	1.2\|2326955\|31\|NZ_CP046737\|PILER-CR	2326955-2326985	31	FJ184280	Enterobacteria phage YYZ-2008, complete genome	2608-2638	8	0.742
NZ_CP046737_1	1.2\|2326955\|31\|NZ_CP046737\|PILER-CR	2326955-2326985	31	AP012538	Stx2-converting phage Stx2a_WGPS4 proviral DNA, complete genome	2427-2457	8	0.742
NZ_CP046737_1	1.2\|2326955\|31\|NZ_CP046737\|PILER-CR	2326955-2326985	31	AB255436	Stx2-converting phage 86 DNA, complete genome	41926-41956	8	0.742
NZ_CP046737_1	1.2\|2326955\|31\|NZ_CP046737\|PILER-CR	2326955-2326985	31	NC_011357	Stx2-converting phage 1717, complete prophage genome	3083-3113	8	0.742
NZ_CP046737_1	1.2\|2326955\|31\|NZ_CP046737\|PILER-CR	2326955-2326985	31	AP012530	Stx2-converting phage Stx2a_F349 proviral DNA, complete genome	2427-2457	8	0.742
NZ_CP046737_1	1.2\|2326955\|31\|NZ_CP046737\|PILER-CR	2326955-2326985	31	AP000400	Enterobacteria phage VT1-Sakai genomic DNA, prophage inserted region in Escherichia coli O157:H7	53550-53580	8	0.742
NZ_CP046737_1	1.2\|2326955\|31\|NZ_CP046737\|PILER-CR	2326955-2326985	31	NZ_CP009417	Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence	3103-3133	8	0.742
NZ_CP046737_1	1.10\|2327320\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327320-2327352	33	NZ_CP044425	Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence	86702-86734	8	0.758
NZ_CP046737_1	1.21\|2327991\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327991-2328023	33	NZ_CP022661	Salmonella enterica subsp. enterica strain RM11065 plasmid pRM11065-1, complete sequence	100252-100284	8	0.758
NZ_CP046737_1	1.29\|2328479\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328479-2328511	33	MG065657	UNVERIFIED: Campylobacter phage C4, complete genome	7291-7323	8	0.758
NZ_CP046737_1	1.29\|2328479\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328479-2328511	33	MG065675	UNVERIFIED: Campylobacter phage A118, complete genome	40976-41008	8	0.758
NZ_CP046737_1	1.29\|2328479\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328479-2328511	33	MG065687	UNVERIFIED: Campylobacter phage A136, complete genome	15741-15773	8	0.758
NZ_CP046737_1	1.29\|2328479\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328479-2328511	33	MG065649	UNVERIFIED: Campylobacter phage A143, complete genome	15473-15505	8	0.758
NZ_CP046737_1	1.29\|2328479\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328479-2328511	33	MG065671	UNVERIFIED: Campylobacter phage A120, complete genome	24881-24913	8	0.758
NZ_CP046737_1	1.29\|2328479\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328479-2328511	33	MG065679	UNVERIFIED: Campylobacter phage A13a, complete genome	938-970	8	0.758
NZ_CP046737_1	1.29\|2328479\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328479-2328511	33	MG065665	UNVERIFIED: Campylobacter phage A131, complete genome	15723-15755	8	0.758
NZ_CP046737_1	1.29\|2328479\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328479-2328511	33	MG065663	UNVERIFIED: Campylobacter phage A134, complete genome	15723-15755	8	0.758
NZ_CP046737_1	1.29\|2328479\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328479-2328511	33	MG065670	UNVERIFIED: Campylobacter phage A121, complete genome	9129-9161	8	0.758
NZ_CP046737_1	1.29\|2328479\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328479-2328511	33	MG065640	UNVERIFIED: Campylobacter phage A14b, complete genome	32325-32357	8	0.758
NZ_CP046737_1	1.29\|2328479\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328479-2328511	33	MG065641	UNVERIFIED: Campylobacter phage A14a, complete genome	11526-11558	8	0.758
NZ_CP046737_1	1.29\|2328479\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328479-2328511	33	MG065680	UNVERIFIED: Campylobacter phage A113, complete genome	16021-16053	8	0.758
NZ_CP046737_1	1.29\|2328479\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328479-2328511	33	MG065669	UNVERIFIED: Campylobacter phage A123, complete genome	40960-40992	8	0.758
NZ_CP046737_1	1.29\|2328479\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328479-2328511	33	MG065643	UNVERIFIED: Campylobacter phage E6, complete genome	30694-30726	8	0.758
NZ_CP046737_1	1.29\|2328479\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328479-2328511	33	MG065667	UNVERIFIED: Campylobacter phage A127, complete genome	5330-5362	8	0.758
NZ_CP046737_1	1.29\|2328479\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328479-2328511	33	MG065681	UNVERIFIED: Campylobacter phage A139, complete genome	1653-1685	8	0.758
NZ_CP046737_1	1.34\|2328784\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328784-2328816	33	MT711888	Pseudomonas phage Dolphis, complete genome	61621-61653	8	0.758
NZ_CP046737_1	1.2\|2326955\|31\|NZ_CP046737\|PILER-CR	2326955-2326985	31	NC_022877	Bacillus thuringiensis YBT-1518 plasmid pBMB0232, complete sequence	75752-75782	9	0.71
NZ_CP046737_1	1.21\|2327991\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2327991-2328023	33	NC_014841	Pantoea sp. At-9b plasmid pPAT9B04, complete sequence	137441-137473	9	0.727
NZ_CP046737_1	1.23\|2328113\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328113-2328145	33	KU252585	Gordonia phage Howe, complete genome	4661-4693	9	0.727
NZ_CP046737_1	1.23\|2328113\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328113-2328145	33	MK878902	Gordonia phage Twinkle, complete genome	4661-4693	9	0.727
NZ_CP046737_1	1.23\|2328113\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2328113-2328145	33	MK061406	Gordonia phage Adora, complete genome	4661-4693	9	0.727
NZ_CP046737_1	1.4\|2326954\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2326954-2326986	33	AP012539	Stx2-converting phage Stx2a_WGPS6 proviral DNA, complete genome	4274-4306	10	0.697
NZ_CP046737_1	1.4\|2326954\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2326954-2326986	33	FM180578	Enterobacteria phage 2851, complete genome	2426-2458	10	0.697
NZ_CP046737_1	1.4\|2326954\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2326954-2326986	33	FJ188381	Stx2-converting phage 1717, complete genome	3082-3114	10	0.697
NZ_CP046737_1	1.4\|2326954\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2326954-2326986	33	NC_008464	Stx2-converting phage 86, complete genome	41925-41957	10	0.697
NZ_CP046737_1	1.4\|2326954\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2326954-2326986	33	NC_011356	Enterobacteria phage YYZ-2008, complete prophage genome	2607-2639	10	0.697
NZ_CP046737_1	1.4\|2326954\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2326954-2326986	33	NC_049944	Stx2-converting phage Stx2a_WGPS8 proviral DNA, complete genome	2430-2462	10	0.697
NZ_CP046737_1	1.4\|2326954\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2326954-2326986	33	FJ184280	Enterobacteria phage YYZ-2008, complete genome	2607-2639	10	0.697
NZ_CP046737_1	1.4\|2326954\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2326954-2326986	33	AP012538	Stx2-converting phage Stx2a_WGPS4 proviral DNA, complete genome	2426-2458	10	0.697
NZ_CP046737_1	1.4\|2326954\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2326954-2326986	33	AB255436	Stx2-converting phage 86 DNA, complete genome	41925-41957	10	0.697
NZ_CP046737_1	1.4\|2326954\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2326954-2326986	33	NC_011357	Stx2-converting phage 1717, complete prophage genome	3082-3114	10	0.697
NZ_CP046737_1	1.4\|2326954\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2326954-2326986	33	AP012530	Stx2-converting phage Stx2a_F349 proviral DNA, complete genome	2426-2458	10	0.697
NZ_CP046737_1	1.4\|2326954\|33\|NZ_CP046737\|CRISPRCasFinder,CRT	2326954-2326986	33	AP000400	Enterobacteria phage VT1-Sakai genomic DNA, prophage inserted region in Escherichia coli O157:H7	53549-53581	10	0.697

1. spacer 1.9|2327259|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_022747 (Vibrio phage VPUSM 8, complete genome) position: , mismatch: 0, identity: 1.0

tatgcacgtagccacagccggagaactgattga	CRISPR spacer
tatgcacgtagccacagccggagaactgattga	Protospacer
*********************************

2. spacer 1.9|2327259|33|NZ_CP046737|CRISPRCasFinder,CRT matches to KX058879 (Vibrio phage VcP032, complete genome) position: , mismatch: 0, identity: 1.0

tatgcacgtagccacagccggagaactgattga	CRISPR spacer
tatgcacgtagccacagccggagaactgattga	Protospacer
*********************************

3. spacer 1.9|2327259|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AB374228 (Vibrio phage kappa proviral DNA, complete genome) position: , mismatch: 0, identity: 1.0

tatgcacgtagccacagccggagaactgattga	CRISPR spacer
tatgcacgtagccacagccggagaactgattga	Protospacer
*********************************

4. spacer 1.9|2327259|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AF125163 (Bacteriophage K139, complete genome) position: , mismatch: 0, identity: 1.0

tatgcacgtagccacagccggagaactgattga	CRISPR spacer
tatgcacgtagccacagccggagaactgattga	Protospacer
*********************************

5. spacer 1.9|2327259|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_003313 (Vibrio phage K139, complete genome) position: , mismatch: 0, identity: 1.0

tatgcacgtagccacagccggagaactgattga	CRISPR spacer
tatgcacgtagccacagccggagaactgattga	Protospacer
*********************************

6. spacer 1.9|2327259|33|NZ_CP046737|CRISPRCasFinder,CRT matches to KU504502 (UNVERIFIED: Vibrio phage 919TP, complete genome) position: , mismatch: 0, identity: 1.0

tatgcacgtagccacagccggagaactgattga	CRISPR spacer
tatgcacgtagccacagccggagaactgattga	Protospacer
*********************************

7. spacer 1.12|2327442|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MK575466 (Vibrio phage Rostov 7, complete genome) position: , mismatch: 0, identity: 1.0

tatgtttggcaatggtcctgagtttgacaacgt	CRISPR spacer
tatgtttggcaatggtcctgagtttgacaacgt	Protospacer
*********************************

8. spacer 1.15|2327625|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NZ_CP049915 (Vibrio sp. HDW18 plasmid p_unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ctcgatgcgaccacttgcccacttggtgacgct	CRISPR spacer
ctcgatgcgaccacttgcccacttggtgacgct	Protospacer
*********************************

9. spacer 1.18|2327808|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_024369 (Vibrio phage X29, complete genome) position: , mismatch: 0, identity: 1.0

taagctgcttgatcgccggacattcatcaataa	CRISPR spacer
taagctgcttgatcgccggacattcatcaataa	Protospacer
*********************************

10. spacer 1.18|2327808|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MK575466 (Vibrio phage Rostov 7, complete genome) position: , mismatch: 0, identity: 1.0

taagctgcttgatcgccggacattcatcaataa	CRISPR spacer
taagctgcttgatcgccggacattcatcaataa	Protospacer
*********************************

11. spacer 1.18|2327808|33|NZ_CP046737|CRISPRCasFinder,CRT matches to KJ545483 (Vibrio phage phi 2, complete genome) position: , mismatch: 0, identity: 1.0

taagctgcttgatcgccggacattcatcaataa	CRISPR spacer
taagctgcttgatcgccggacattcatcaataa	Protospacer
*********************************

12. spacer 1.21|2327991|33|NZ_CP046737|CRISPRCasFinder,CRT matches to LR700236 (marine metagenome genome assembly, complete genome: monopartite) position: , mismatch: 0, identity: 1.0

tcatagagatggctctggccgatttcagccgtt	CRISPR spacer
tcatagagatggctctggccgatttcagccgtt	Protospacer
*********************************

13. spacer 1.23|2328113|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AY147032 (Bacteriophage Ch457 ORF35 and ORF36 genes, complete cds) position: , mismatch: 0, identity: 1.0

tacaaagtagcaccgggtgtggtgtacgtgggc	CRISPR spacer
tacaaagtagcaccgggtgtggtgtacgtgggc	Protospacer
*********************************

14. spacer 1.23|2328113|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_022747 (Vibrio phage VPUSM 8, complete genome) position: , mismatch: 0, identity: 1.0

tacaaagtagcaccgggtgtggtgtacgtgggc	CRISPR spacer
tacaaagtagcaccgggtgtggtgtacgtgggc	Protospacer
*********************************

15. spacer 1.23|2328113|33|NZ_CP046737|CRISPRCasFinder,CRT matches to KX058879 (Vibrio phage VcP032, complete genome) position: , mismatch: 0, identity: 1.0

tacaaagtagcaccgggtgtggtgtacgtgggc	CRISPR spacer
tacaaagtagcaccgggtgtggtgtacgtgggc	Protospacer
*********************************

16. spacer 1.23|2328113|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AB374228 (Vibrio phage kappa proviral DNA, complete genome) position: , mismatch: 0, identity: 1.0

tacaaagtagcaccgggtgtggtgtacgtgggc	CRISPR spacer
tacaaagtagcaccgggtgtggtgtacgtgggc	Protospacer
*********************************

17. spacer 1.23|2328113|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AF125163 (Bacteriophage K139, complete genome) position: , mismatch: 0, identity: 1.0

tacaaagtagcaccgggtgtggtgtacgtgggc	CRISPR spacer
tacaaagtagcaccgggtgtggtgtacgtgggc	Protospacer
*********************************

18. spacer 1.23|2328113|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AY147033 (Bacteriophage E8498 ORF35 and ORF36 genes, complete cds) position: , mismatch: 0, identity: 1.0

tacaaagtagcaccgggtgtggtgtacgtgggc	CRISPR spacer
tacaaagtagcaccgggtgtggtgtacgtgggc	Protospacer
*********************************

19. spacer 1.23|2328113|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_003313 (Vibrio phage K139, complete genome) position: , mismatch: 0, identity: 1.0

tacaaagtagcaccgggtgtggtgtacgtgggc	CRISPR spacer
tacaaagtagcaccgggtgtggtgtacgtgggc	Protospacer
*********************************

20. spacer 1.23|2328113|33|NZ_CP046737|CRISPRCasFinder,CRT matches to KU504502 (UNVERIFIED: Vibrio phage 919TP, complete genome) position: , mismatch: 0, identity: 1.0

tacaaagtagcaccgggtgtggtgtacgtgggc	CRISPR spacer
tacaaagtagcaccgggtgtggtgtacgtgggc	Protospacer
*********************************

21. spacer 1.24|2328174|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_022747 (Vibrio phage VPUSM 8, complete genome) position: , mismatch: 0, identity: 1.0

cgcagcctaaccgctgcgtttctttttgcctgc	CRISPR spacer
cgcagcctaaccgctgcgtttctttttgcctgc	Protospacer
*********************************

22. spacer 1.24|2328174|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AB374228 (Vibrio phage kappa proviral DNA, complete genome) position: , mismatch: 0, identity: 1.0

cgcagcctaaccgctgcgtttctttttgcctgc	CRISPR spacer
cgcagcctaaccgctgcgtttctttttgcctgc	Protospacer
*********************************

23. spacer 1.24|2328174|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AF125163 (Bacteriophage K139, complete genome) position: , mismatch: 0, identity: 1.0

cgcagcctaaccgctgcgtttctttttgcctgc	CRISPR spacer
cgcagcctaaccgctgcgtttctttttgcctgc	Protospacer
*********************************

24. spacer 1.24|2328174|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_003313 (Vibrio phage K139, complete genome) position: , mismatch: 0, identity: 1.0

cgcagcctaaccgctgcgtttctttttgcctgc	CRISPR spacer
cgcagcctaaccgctgcgtttctttttgcctgc	Protospacer
*********************************

25. spacer 1.24|2328174|33|NZ_CP046737|CRISPRCasFinder,CRT matches to KU504502 (UNVERIFIED: Vibrio phage 919TP, complete genome) position: , mismatch: 0, identity: 1.0

cgcagcctaaccgctgcgtttctttttgcctgc	CRISPR spacer
cgcagcctaaccgctgcgtttctttttgcctgc	Protospacer
*********************************

26. spacer 1.30|2328540|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NZ_CP049915 (Vibrio sp. HDW18 plasmid p_unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tgacgggaccgaccccttgccctttgatgagca	CRISPR spacer
tgacgggaccgaccccttgccctttgatgagca	Protospacer
*********************************

27. spacer 1.8|2327198|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_022747 (Vibrio phage VPUSM 8, complete genome) position: , mismatch: 1, identity: 0.97

tgcgtttatcaaaggctactcgccccggtctga	CRISPR spacer
tgcgtttatcaaaggctattcgccccggtctga	Protospacer
******************.**************

28. spacer 1.8|2327198|33|NZ_CP046737|CRISPRCasFinder,CRT matches to KX058879 (Vibrio phage VcP032, complete genome) position: , mismatch: 1, identity: 0.97

tgcgtttatcaaaggctactcgccccggtctga	CRISPR spacer
tgcgtttatcaaaggctattcgccccggtctga	Protospacer
******************.**************

29. spacer 1.8|2327198|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AB374228 (Vibrio phage kappa proviral DNA, complete genome) position: , mismatch: 1, identity: 0.97

tgcgtttatcaaaggctactcgccccggtctga	CRISPR spacer
tgcgtttatcaaaggctattcgccccggtctga	Protospacer
******************.**************

30. spacer 1.8|2327198|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AF125163 (Bacteriophage K139, complete genome) position: , mismatch: 1, identity: 0.97

tgcgtttatcaaaggctactcgccccggtctga	CRISPR spacer
tgcgtttatcaaaggctattcgccccggtctga	Protospacer
******************.**************

31. spacer 1.8|2327198|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_003313 (Vibrio phage K139, complete genome) position: , mismatch: 1, identity: 0.97

tgcgtttatcaaaggctactcgccccggtctga	CRISPR spacer
tgcgtttatcaaaggctattcgccccggtctga	Protospacer
******************.**************

32. spacer 1.8|2327198|33|NZ_CP046737|CRISPRCasFinder,CRT matches to KU504502 (UNVERIFIED: Vibrio phage 919TP, complete genome) position: , mismatch: 1, identity: 0.97

tgcgtttatcaaaggctactcgccccggtctga	CRISPR spacer
tgcgtttatcaaaggctattcgccccggtctga	Protospacer
******************.**************

33. spacer 1.12|2327442|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_024369 (Vibrio phage X29, complete genome) position: , mismatch: 1, identity: 0.97

tatgtttggcaatggtcctgagtttgacaacgt	CRISPR spacer
tatgtttggcaatggttctgagtttgacaacgt	Protospacer
****************.****************

34. spacer 1.12|2327442|33|NZ_CP046737|CRISPRCasFinder,CRT matches to KJ545483 (Vibrio phage phi 2, complete genome) position: , mismatch: 1, identity: 0.97

tatgtttggcaatggtcctgagtttgacaacgt	CRISPR spacer
tatgtttggcaatggttctgagtttgacaacgt	Protospacer
****************.****************

35. spacer 1.20|2327930|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_022747 (Vibrio phage VPUSM 8, complete genome) position: , mismatch: 1, identity: 0.97

tgatacccgcaggctggtgcagcttttcagctt	CRISPR spacer
tgatacccgcaggctggtgcagcttttcagcct	Protospacer
*******************************.*

36. spacer 1.20|2327930|33|NZ_CP046737|CRISPRCasFinder,CRT matches to KX058879 (Vibrio phage VcP032, complete genome) position: , mismatch: 1, identity: 0.97

tgatacccgcaggctggtgcagcttttcagctt	CRISPR spacer
tgatacccgcaggctggtgcagcttttcagcct	Protospacer
*******************************.*

37. spacer 1.20|2327930|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AB374228 (Vibrio phage kappa proviral DNA, complete genome) position: , mismatch: 1, identity: 0.97

tgatacccgcaggctggtgcagcttttcagctt	CRISPR spacer
tgatacccgcaggctggtgcagcttttcagcct	Protospacer
*******************************.*

38. spacer 1.20|2327930|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AF125163 (Bacteriophage K139, complete genome) position: , mismatch: 1, identity: 0.97

tgatacccgcaggctggtgcagcttttcagctt	CRISPR spacer
tgatacccgcaggctggtgcagcttttcagcct	Protospacer
*******************************.*

39. spacer 1.20|2327930|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_003313 (Vibrio phage K139, complete genome) position: , mismatch: 1, identity: 0.97

tgatacccgcaggctggtgcagcttttcagctt	CRISPR spacer
tgatacccgcaggctggtgcagcttttcagcct	Protospacer
*******************************.*

40. spacer 1.20|2327930|33|NZ_CP046737|CRISPRCasFinder,CRT matches to KU504502 (UNVERIFIED: Vibrio phage 919TP, complete genome) position: , mismatch: 1, identity: 0.97

tgatacccgcaggctggtgcagcttttcagctt	CRISPR spacer
tgatacccgcaggctggtgcagcttttcagcct	Protospacer
*******************************.*

41. spacer 1.23|2328113|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AY147035 (Bacteriophage O395 ORF35 and ORF36 genes, complete cds) position: , mismatch: 1, identity: 0.97

tacaaagtagcaccgggtgtggtgtacgtgggc	CRISPR spacer
tacaaagtagcaccgggtgtggtgtacgttggc	Protospacer
***************************** ***

42. spacer 1.33|2328723|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_019518 (Vibrio phage vB_VchM-138, complete genome) position: , mismatch: 1, identity: 0.97

ctgtttaccgcgtgttacgatatcccctgtcac	CRISPR spacer
ttgtttaccgcgtgttacgatatcccctgtcac	Protospacer
.********************************

43. spacer 1.33|2328723|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MN379461 (Vibrio phage Rostov M3 clone NODE_2_length_12308_cov_191.405 genomic sequence) position: , mismatch: 1, identity: 0.97

ctgtttaccgcgtgttacgatatcccctgtcac	CRISPR spacer
ctgtttaccgcgtgttacgatatcccctgttac	Protospacer
******************************.**

44. spacer 1.33|2328723|33|NZ_CP046737|CRISPRCasFinder,CRT matches to KJ572844 (Vibrio phage 24, complete genome) position: , mismatch: 1, identity: 0.97

ctgtttaccgcgtgttacgatatcccctgtcac	CRISPR spacer
ctgtttaccgcgtgttacgatatcccctgttac	Protospacer
******************************.**

45. spacer 1.33|2328723|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_019457 (Vibrio phage CP-T1, complete genome) position: , mismatch: 1, identity: 0.97

ctgtttaccgcgtgttacgatatcccctgtcac	CRISPR spacer
ctgtttaccgcgtgttacgatatcccctgttac	Protospacer
******************************.**

46. spacer 1.35|2328845|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NZ_CP049915 (Vibrio sp. HDW18 plasmid p_unnamed2, complete sequence) position: , mismatch: 1, identity: 0.97

ctcattcgagagtgggacgcttcacagccaaca	CRISPR spacer
ctcattcgagagtgggacgcttcacagtcaaca	Protospacer
***************************.*****

47. spacer 1.24|2328174|33|NZ_CP046737|CRISPRCasFinder,CRT matches to KX058879 (Vibrio phage VcP032, complete genome) position: , mismatch: 2, identity: 0.939

cgcagcctaaccgctgcgtttc-tttttgcctgc	CRISPR spacer
cgcagcctaaccgctgcgtttcttttttgtctg-	Protospacer
********************** ******.***

48. spacer 1.37|2328967|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_022747 (Vibrio phage VPUSM 8, complete genome) position: , mismatch: 2, identity: 0.939

cgtttaaacagctttgatattgcggacatcacc	CRISPR spacer
cgtttaaacagcttcgagattgcggacatcacc	Protospacer
**************.** ***************

49. spacer 1.37|2328967|33|NZ_CP046737|CRISPRCasFinder,CRT matches to KX058879 (Vibrio phage VcP032, complete genome) position: , mismatch: 2, identity: 0.939

cgtttaaacagctttgatattgcggacatcacc	CRISPR spacer
cgtttaaacagcttcgagattgcggacatcacc	Protospacer
**************.** ***************

50. spacer 1.37|2328967|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AB374228 (Vibrio phage kappa proviral DNA, complete genome) position: , mismatch: 2, identity: 0.939

cgtttaaacagctttgatattgcggacatcacc	CRISPR spacer
cgtttaaacagcttcgagattgcggacatcacc	Protospacer
**************.** ***************

51. spacer 1.37|2328967|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AF125163 (Bacteriophage K139, complete genome) position: , mismatch: 2, identity: 0.939

cgtttaaacagctttgatattgcggacatcacc	CRISPR spacer
cgtttaaacagcttcgagattgcggacatcacc	Protospacer
**************.** ***************

52. spacer 1.37|2328967|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_003313 (Vibrio phage K139, complete genome) position: , mismatch: 2, identity: 0.939

cgtttaaacagctttgatattgcggacatcacc	CRISPR spacer
cgtttaaacagcttcgagattgcggacatcacc	Protospacer
**************.** ***************

53. spacer 1.37|2328967|33|NZ_CP046737|CRISPRCasFinder,CRT matches to KU504502 (UNVERIFIED: Vibrio phage 919TP, complete genome) position: , mismatch: 2, identity: 0.939

cgtttaaacagctttgatattgcggacatcacc	CRISPR spacer
cgtttaaacagcttcgagattgcggacatcacc	Protospacer
**************.** ***************

54. spacer 1.34|2328784|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NZ_CP049915 (Vibrio sp. HDW18 plasmid p_unnamed2, complete sequence) position: , mismatch: 3, identity: 0.909

ccttcaaacctcagctgccgccatattgcgctg	CRISPR spacer
cattcaaacttcagctgccgccatattgcgctt	Protospacer
* *******.**********************

55. spacer 1.24|2328174|33|NZ_CP046737|CRISPRCasFinder,CRT matches to HG803181 (Vibrio phage PV94 complete genome) position: , mismatch: 4, identity: 0.879

cgcagcctaaccgctgcgtttctttttgcctgc	CRISPR spacer
cgcagcctcaccgctgcgtttctttttgcccaa	Protospacer
******** *********************..

56. spacer 1.8|2327198|33|NZ_CP046737|CRISPRCasFinder,CRT matches to JF974301 (Vibrio phage VD1, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces) position: , mismatch: 5, identity: 0.848

tgcgtttatcaaaggctactcgccccggtctga	CRISPR spacer
ttcgtttatcaaacgcgactcgccccggtcgaa	Protospacer
* *********** ** ************* .*

57. spacer 1.2|2326955|31|NZ_CP046737|PILER-CR matches to AP012539 (Stx2-converting phage Stx2a_WGPS6 proviral DNA, complete genome) position: , mismatch: 8, identity: 0.742

aacgctgatttagttgaaatcatggagattt	CRISPR spacer
ccaggagatatggttgaaatcatggagattg	Protospacer
   *  *** *.******************

58. spacer 1.2|2326955|31|NZ_CP046737|PILER-CR matches to FM180578 (Enterobacteria phage 2851, complete genome) position: , mismatch: 8, identity: 0.742

aacgctgatttagttgaaatcatggagattt	CRISPR spacer
ccaggagatatggttgaaatcatggagattg	Protospacer
   *  *** *.******************

59. spacer 1.2|2326955|31|NZ_CP046737|PILER-CR matches to FJ188381 (Stx2-converting phage 1717, complete genome) position: , mismatch: 8, identity: 0.742

aacgctgatttagttgaaatcatggagattt	CRISPR spacer
ccaggagatatggttgaaatcatggagattg	Protospacer
   *  *** *.******************

60. spacer 1.2|2326955|31|NZ_CP046737|PILER-CR matches to NC_008464 (Stx2-converting phage 86, complete genome) position: , mismatch: 8, identity: 0.742

aacgctgatttagttgaaatcatggagattt	CRISPR spacer
ccaggggatatggttgaaatcatggagattg	Protospacer
   *  *** *.******************

61. spacer 1.2|2326955|31|NZ_CP046737|PILER-CR matches to NC_011356 (Enterobacteria phage YYZ-2008, complete prophage genome) position: , mismatch: 8, identity: 0.742

aacgctgatttagttgaaatcatggagattt	CRISPR spacer
ccaggagatatggttgaaatcatggagattg	Protospacer
   *  *** *.******************

62. spacer 1.2|2326955|31|NZ_CP046737|PILER-CR matches to NC_049944 (Stx2-converting phage Stx2a_WGPS8 proviral DNA, complete genome) position: , mismatch: 8, identity: 0.742

aacgctgatttagttgaaatcatggagattt	CRISPR spacer
ccaggagatatggttgaaatcatggagattg	Protospacer
   *  *** *.******************

63. spacer 1.2|2326955|31|NZ_CP046737|PILER-CR matches to FJ184280 (Enterobacteria phage YYZ-2008, complete genome) position: , mismatch: 8, identity: 0.742

aacgctgatttagttgaaatcatggagattt	CRISPR spacer
ccaggagatatggttgaaatcatggagattg	Protospacer
   *  *** *.******************

64. spacer 1.2|2326955|31|NZ_CP046737|PILER-CR matches to AP012538 (Stx2-converting phage Stx2a_WGPS4 proviral DNA, complete genome) position: , mismatch: 8, identity: 0.742

aacgctgatttagttgaaatcatggagattt	CRISPR spacer
ccaggagatatggttgaaatcatggagattg	Protospacer
   *  *** *.******************

65. spacer 1.2|2326955|31|NZ_CP046737|PILER-CR matches to AB255436 (Stx2-converting phage 86 DNA, complete genome) position: , mismatch: 8, identity: 0.742

aacgctgatttagttgaaatcatggagattt	CRISPR spacer
ccaggggatatggttgaaatcatggagattg	Protospacer
   *  *** *.******************

66. spacer 1.2|2326955|31|NZ_CP046737|PILER-CR matches to NC_011357 (Stx2-converting phage 1717, complete prophage genome) position: , mismatch: 8, identity: 0.742

aacgctgatttagttgaaatcatggagattt	CRISPR spacer
ccaggagatatggttgaaatcatggagattg	Protospacer
   *  *** *.******************

67. spacer 1.2|2326955|31|NZ_CP046737|PILER-CR matches to AP012530 (Stx2-converting phage Stx2a_F349 proviral DNA, complete genome) position: , mismatch: 8, identity: 0.742

aacgctgatttagttgaaatcatggagattt	CRISPR spacer
ccaggagatatggttgaaatcatggagattg	Protospacer
   *  *** *.******************

68. spacer 1.2|2326955|31|NZ_CP046737|PILER-CR matches to AP000400 (Enterobacteria phage VT1-Sakai genomic DNA, prophage inserted region in Escherichia coli O157:H7) position: , mismatch: 8, identity: 0.742

aacgctgatttagttgaaatcatggagattt	CRISPR spacer
ccaggagatatggttgaaatcatggagattg	Protospacer
   *  *** *.******************

69. spacer 1.2|2326955|31|NZ_CP046737|PILER-CR matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

aacgctgatttagttgaaatcatggagattt	CRISPR spacer
gaaccaaatttagttgaaatcatggtaattg	Protospacer
.*  * .****************** .***

70. spacer 1.10|2327320|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 8, identity: 0.758

tcaaagccgctgagatgctgaagaacgagctgt-	CRISPR spacer
tggaagccgccgagatgctgaagaa-ggacggcg	Protospacer
* .*******.************** *..* *.

71. spacer 1.21|2327991|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NZ_CP022661 (Salmonella enterica subsp. enterica strain RM11065 plasmid pRM11065-1, complete sequence) position: , mismatch: 8, identity: 0.758

tcatagagatggctctggccgatttcagccgtt	CRISPR spacer
gtaaagagatgactctggcagatttcagacttg	Protospacer
 .* *******.******* ******** * *

72. spacer 1.29|2328479|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MG065657 (UNVERIFIED: Campylobacter phage C4, complete genome) position: , mismatch: 8, identity: 0.758

taagcatattcagcctttagctatccataattc	CRISPR spacer
tgaccatattcagcctttcgctttccattttgt	Protospacer
*.* ************** *** *****  * .

73. spacer 1.29|2328479|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MG065675 (UNVERIFIED: Campylobacter phage A118, complete genome) position: , mismatch: 8, identity: 0.758

taagcatattcagcctttagctatccataattc	CRISPR spacer
tgaccatattcagcctttcgctttccattttgt	Protospacer
*.* ************** *** *****  * .

74. spacer 1.29|2328479|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MG065687 (UNVERIFIED: Campylobacter phage A136, complete genome) position: , mismatch: 8, identity: 0.758

taagcatattcagcctttagctatccataattc	CRISPR spacer
tgaccatattcagcctttcgctttccattttgt	Protospacer
*.* ************** *** *****  * .

75. spacer 1.29|2328479|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MG065649 (UNVERIFIED: Campylobacter phage A143, complete genome) position: , mismatch: 8, identity: 0.758

taagcatattcagcctttagctatccataattc	CRISPR spacer
tgaccatattcagcctttcgctttccattttgt	Protospacer
*.* ************** *** *****  * .

76. spacer 1.29|2328479|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MG065671 (UNVERIFIED: Campylobacter phage A120, complete genome) position: , mismatch: 8, identity: 0.758

taagcatattcagcctttagctatccataattc	CRISPR spacer
tgaccatattcagcctttcgctttccattttgt	Protospacer
*.* ************** *** *****  * .

77. spacer 1.29|2328479|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MG065679 (UNVERIFIED: Campylobacter phage A13a, complete genome) position: , mismatch: 8, identity: 0.758

taagcatattcagcctttagctatccataattc	CRISPR spacer
tgaccatattcagcctttcgctttccattttgt	Protospacer
*.* ************** *** *****  * .

78. spacer 1.29|2328479|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MG065665 (UNVERIFIED: Campylobacter phage A131, complete genome) position: , mismatch: 8, identity: 0.758

taagcatattcagcctttagctatccataattc	CRISPR spacer
tgaccatattcagcctttcgctttccattttgt	Protospacer
*.* ************** *** *****  * .

79. spacer 1.29|2328479|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MG065663 (UNVERIFIED: Campylobacter phage A134, complete genome) position: , mismatch: 8, identity: 0.758

taagcatattcagcctttagctatccataattc	CRISPR spacer
tgaccatattcagcctttcgctttccattttgt	Protospacer
*.* ************** *** *****  * .

80. spacer 1.29|2328479|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MG065670 (UNVERIFIED: Campylobacter phage A121, complete genome) position: , mismatch: 8, identity: 0.758

taagcatattcagcctttagctatccataattc	CRISPR spacer
tgaccatattcagcctttcgctttccattttgt	Protospacer
*.* ************** *** *****  * .

81. spacer 1.29|2328479|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MG065640 (UNVERIFIED: Campylobacter phage A14b, complete genome) position: , mismatch: 8, identity: 0.758

taagcatattcagcctttagctatccataattc	CRISPR spacer
tgaccatattcagcctttcgctttccattttgt	Protospacer
*.* ************** *** *****  * .

82. spacer 1.29|2328479|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MG065641 (UNVERIFIED: Campylobacter phage A14a, complete genome) position: , mismatch: 8, identity: 0.758

taagcatattcagcctttagctatccataattc	CRISPR spacer
tgaccatattcagcctttcgctttccattttgt	Protospacer
*.* ************** *** *****  * .

83. spacer 1.29|2328479|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MG065680 (UNVERIFIED: Campylobacter phage A113, complete genome) position: , mismatch: 8, identity: 0.758

taagcatattcagcctttagctatccataattc	CRISPR spacer
tgaccatattcagcctttcgctttccattttgt	Protospacer
*.* ************** *** *****  * .

84. spacer 1.29|2328479|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MG065669 (UNVERIFIED: Campylobacter phage A123, complete genome) position: , mismatch: 8, identity: 0.758

taagcatattcagcctttagctatccataattc	CRISPR spacer
tgaccatattcagcctttcgctttccattttgt	Protospacer
*.* ************** *** *****  * .

85. spacer 1.29|2328479|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MG065643 (UNVERIFIED: Campylobacter phage E6, complete genome) position: , mismatch: 8, identity: 0.758

taagcatattcagcctttagctatccataattc	CRISPR spacer
tgaccatattcagcctttcgctttccattttgt	Protospacer
*.* ************** *** *****  * .

86. spacer 1.29|2328479|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MG065667 (UNVERIFIED: Campylobacter phage A127, complete genome) position: , mismatch: 8, identity: 0.758

taagcatattcagcctttagctatccataattc	CRISPR spacer
tgaccatattcagcctttcgctttccattttgt	Protospacer
*.* ************** *** *****  * .

87. spacer 1.29|2328479|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MG065681 (UNVERIFIED: Campylobacter phage A139, complete genome) position: , mismatch: 8, identity: 0.758

taagcatattcagcctttagctatccataattc	CRISPR spacer
tgaccatattcagcctttcgctttccattttgt	Protospacer
*.* ************** *** *****  * .

88. spacer 1.34|2328784|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MT711888 (Pseudomonas phage Dolphis, complete genome) position: , mismatch: 8, identity: 0.758

ccttcaaacctcagctgccgccatattgcgctg	CRISPR spacer
ccgcagcggctcagctgccgacatattgcgctg	Protospacer
** . . . *********** ************

89. spacer 1.2|2326955|31|NZ_CP046737|PILER-CR matches to NC_022877 (Bacillus thuringiensis YBT-1518 plasmid pBMB0232, complete sequence) position: , mismatch: 9, identity: 0.71

aacgctgatttagttgaaatcatggagattt	CRISPR spacer
ccccctgatttagtagaaatcagggaggaac	Protospacer
  * ********** ******* ****.  .

90. spacer 1.21|2327991|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_014841 (Pantoea sp. At-9b plasmid pPAT9B04, complete sequence) position: , mismatch: 9, identity: 0.727

tcatagagatggctctggccgatttcagccgtt	CRISPR spacer
ggaatggtatggctctggccgctttcggccgtg	Protospacer
  *  *. ************* ****.*****

91. spacer 1.23|2328113|33|NZ_CP046737|CRISPRCasFinder,CRT matches to KU252585 (Gordonia phage Howe, complete genome) position: , mismatch: 9, identity: 0.727

tacaaagtagcaccgggtgtggtgtacgtgggc	CRISPR spacer
gtcgacccggcaccgggtgtgctgtacgtcggc	Protospacer
  *.*  ..************ ******* ***

92. spacer 1.23|2328113|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MK878902 (Gordonia phage Twinkle, complete genome) position: , mismatch: 9, identity: 0.727

tacaaagtagcaccgggtgtggtgtacgtgggc	CRISPR spacer
gtcgacccggcaccgggtgtgctgtacgtcggc	Protospacer
  *.*  ..************ ******* ***

93. spacer 1.23|2328113|33|NZ_CP046737|CRISPRCasFinder,CRT matches to MK061406 (Gordonia phage Adora, complete genome) position: , mismatch: 9, identity: 0.727

tacaaagtagcaccgggtgtggtgtacgtgggc	CRISPR spacer
gtcgacccggcaccgggtgtgctgtacgtcggc	Protospacer
  *.*  ..************ ******* ***

94. spacer 1.4|2326954|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AP012539 (Stx2-converting phage Stx2a_WGPS6 proviral DNA, complete genome) position: , mismatch: 10, identity: 0.697

taacgctgatttagttgaaatcatggagatttt	CRISPR spacer
accaggagatatggttgaaatcatggagattgc	Protospacer
    *  *** *.****************** .

95. spacer 1.4|2326954|33|NZ_CP046737|CRISPRCasFinder,CRT matches to FM180578 (Enterobacteria phage 2851, complete genome) position: , mismatch: 10, identity: 0.697

taacgctgatttagttgaaatcatggagatttt	CRISPR spacer
accaggagatatggttgaaatcatggagattgc	Protospacer
    *  *** *.****************** .

96. spacer 1.4|2326954|33|NZ_CP046737|CRISPRCasFinder,CRT matches to FJ188381 (Stx2-converting phage 1717, complete genome) position: , mismatch: 10, identity: 0.697

taacgctgatttagttgaaatcatggagatttt	CRISPR spacer
accaggagatatggttgaaatcatggagattgc	Protospacer
    *  *** *.****************** .

97. spacer 1.4|2326954|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_008464 (Stx2-converting phage 86, complete genome) position: , mismatch: 10, identity: 0.697

taacgctgatttagttgaaatcatggagatttt	CRISPR spacer
accaggggatatggttgaaatcatggagattgc	Protospacer
    *  *** *.****************** .

98. spacer 1.4|2326954|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_011356 (Enterobacteria phage YYZ-2008, complete prophage genome) position: , mismatch: 10, identity: 0.697

taacgctgatttagttgaaatcatggagatttt	CRISPR spacer
accaggagatatggttgaaatcatggagattgc	Protospacer
    *  *** *.****************** .

99. spacer 1.4|2326954|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_049944 (Stx2-converting phage Stx2a_WGPS8 proviral DNA, complete genome) position: , mismatch: 10, identity: 0.697

taacgctgatttagttgaaatcatggagatttt	CRISPR spacer
accaggagatatggttgaaatcatggagattgc	Protospacer
    *  *** *.****************** .

100. spacer 1.4|2326954|33|NZ_CP046737|CRISPRCasFinder,CRT matches to FJ184280 (Enterobacteria phage YYZ-2008, complete genome) position: , mismatch: 10, identity: 0.697

taacgctgatttagttgaaatcatggagatttt	CRISPR spacer
accaggagatatggttgaaatcatggagattgc	Protospacer
    *  *** *.****************** .

101. spacer 1.4|2326954|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AP012538 (Stx2-converting phage Stx2a_WGPS4 proviral DNA, complete genome) position: , mismatch: 10, identity: 0.697

taacgctgatttagttgaaatcatggagatttt	CRISPR spacer
accaggagatatggttgaaatcatggagattgc	Protospacer
    *  *** *.****************** .

102. spacer 1.4|2326954|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AB255436 (Stx2-converting phage 86 DNA, complete genome) position: , mismatch: 10, identity: 0.697

taacgctgatttagttgaaatcatggagatttt	CRISPR spacer
accaggggatatggttgaaatcatggagattgc	Protospacer
    *  *** *.****************** .

103. spacer 1.4|2326954|33|NZ_CP046737|CRISPRCasFinder,CRT matches to NC_011357 (Stx2-converting phage 1717, complete prophage genome) position: , mismatch: 10, identity: 0.697

taacgctgatttagttgaaatcatggagatttt	CRISPR spacer
accaggagatatggttgaaatcatggagattgc	Protospacer
    *  *** *.****************** .

104. spacer 1.4|2326954|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AP012530 (Stx2-converting phage Stx2a_F349 proviral DNA, complete genome) position: , mismatch: 10, identity: 0.697

taacgctgatttagttgaaatcatggagatttt	CRISPR spacer
accaggagatatggttgaaatcatggagattgc	Protospacer
    *  *** *.****************** .

105. spacer 1.4|2326954|33|NZ_CP046737|CRISPRCasFinder,CRT matches to AP000400 (Enterobacteria phage VT1-Sakai genomic DNA, prophage inserted region in Escherichia coli O157:H7) position: , mismatch: 10, identity: 0.697

taacgctgatttagttgaaatcatggagatttt	CRISPR spacer
accaggagatatggttgaaatcatggagattgc	Protospacer
    *  *** *.****************** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

285505 : 354571

uncultured_Mediterranean_phage(16.67%)

integrase,tRNA,protease

attL 278207:278222|attR 328622:328637

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
278207:278222	attL	NA	NA	NA	NA
WP_000887349.1\|285505_286813_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.6e-91	43.0
WP_111674332.1\|286920_288207_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	1.7e-18	30.6
WP_000453785.1\|288333_289386_+	biotin synthase BioB	NA	NA	NA	NA
WP_123012211.1\|289369_290524_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_088128080.1\|290520_291324_+	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA
WP_001892155.1\|291299_292016_+	dethiobiotin synthase	NA	NA	NA	NA
WP_001880897.1\|292096_292306_-	hypothetical protein	NA	NA	NA	NA
WP_000821682.1\|292532_293396_+\|protease	protease HtpX	NA	NA	NA	NA
WP_001884612.1\|293605_294034_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_101410752.1\|294030_294756_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_111674330.1\|294766_296047_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_001145055.1\|296046_296856_+	DUF1365 domain-containing protein	NA	NA	NA	NA
WP_080299685.1\|296788_298087_+	class I SAM-dependent methyltransferase	A0A2K9L4K8	Tupanvirus	4.3e-46	33.5
WP_001229552.1\|298089_298629_+	DUF2878 domain-containing protein	NA	NA	NA	NA
WP_114793455.1\|298561_299128_+	hypothetical protein	NA	NA	NA	NA
WP_001234235.1\|299124_299652_+	DUF3833 domain-containing protein	NA	NA	NA	NA
WP_123012212.1\|299742_301113_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.4e-114	47.8
WP_001262240.1\|301170_301788_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_001884617.1\|301810_302929_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000671617.1\|303190_304495_+	inosine/guanosine kinase	NA	NA	NA	NA
WP_001880910.1\|304542_304956_-	DNA-binding protein H-NS	NA	NA	NA	NA
WP_001048830.1\|305643_307245_+	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA
WP_101410748.1\|307653_308550_+	ATP phosphoribosyltransferase	NA	NA	NA	NA
WP_123012213.1\|308554_309850_+	histidinol dehydrogenase	NA	NA	NA	NA
WP_114709581.1\|309853_310894_+	histidinol-phosphate transaminase	NA	NA	NA	NA
WP_000043559.1\|310945_312019_+	bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_000193249.1\|312018_312630_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_032471137.1\|312672_313410_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_000880140.1\|313391_314165_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_001067502.1\|314161_314794_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA	NA	NA	NA
WP_123012214.1\|314964_316422_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_123012215.1\|316421_319097_+\|integrase	integrase	NA	NA	NA	NA
WP_123012216.1\|319096_319774_+	hypothetical protein	NA	NA	NA	NA
WP_123012217.1\|320063_320339_+	transcriptional regulator	NA	NA	NA	NA
WP_123012218.1\|320668_321832_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_123012219.1\|321836_326225_+	trypsin-like peptidase domain-containing protein	A0A2H4PQT3	Staphylococcus_phage	2.0e-71	29.2
WP_123012220.1\|327060_327660_+	hypothetical protein	NA	NA	NA	NA
WP_114742856.1\|328292_329018_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
328622:328637	attR	NA	NA	NA	NA
WP_123012221.1\|329327_331553_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_001880921.1\|331651_331882_-	cold shock domain-containing protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-14	58.2
WP_000041728.1\|332345_332666_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.3e-12	39.5
WP_000932415.1\|332704_334975_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.6e-167	42.8
WP_001018084.1\|335043_336720_-	transporter	NA	NA	NA	NA
WP_000498418.1\|336921_337185_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	2.9e-26	70.5
WP_123012222.1\|337472_338741_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_001093848.1\|338831_339686_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_085602429.1\|339993_341640_-	putative pyridoxal-dependent aspartate 1-decarboxylase	S4W1T5	Pandoravirus	2.3e-20	27.3
WP_000826868.1\|341749_342259_-	hypothetical protein	NA	NA	NA	NA
WP_123012223.1\|342447_343353_-	lysine exporter LysO family protein	NA	NA	NA	NA
WP_123012224.1\|343373_344309_-	HDOD domain-containing protein	A0A1C3NFB0	Phage_NCTB	6.4e-07	21.5
WP_001880934.1\|344650_345259_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_001232640.1\|345354_345903_-	hypothetical protein	NA	NA	NA	NA
WP_001904237.1\|346093_346639_-	response regulator	NA	NA	NA	NA
WP_123012225.1\|346587_348543_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_025998897.1\|348765_350031_+	YdgA family protein	NA	NA	NA	NA
WP_001893876.1\|350107_351247_+	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	1.4e-88	47.3
WP_000506956.1\|351327_352317_-	alpha-L-glutamate ligase-like protein	NA	NA	NA	NA
WP_123012226.1\|352316_353825_-	inactive transglutaminase family protein	NA	NA	NA	NA
WP_000476328.1\|353833_354571_-\|protease	ATP-dependent Zn protease	NA	NA	NA	NA

DBSCAN-SWA_2

658368 : 668627

Vibrio_phage(80.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033932564.1\|658368_658725_-	hypothetical protein	Q9MCC3	Vibrio_phage	8.0e-43	75.2
WP_123012279.1\|658908_659148_+	hypothetical protein	O56843	Vibrio_virus	3.7e-28	79.2
WP_069217175.1\|661311_661623_+	chemotaxis protein	Q2PZB5	Vibrio_virus	7.7e-42	81.8
WP_032468570.1\|661672_661867_+	hypothetical protein	G8IRU7	Vibrio_phage	1.0e-20	71.4
WP_000672167.1\|661900_662110_+	hypothetical protein	G8IRU8	Vibrio_phage	1.3e-16	65.2
WP_123012280.1\|662242_663661_+	hypothetical protein	G8IRU9	Vibrio_phage	2.7e-142	70.3
WP_001160097.1\|663660_664005_+	hypothetical protein	Q64EV1	Vibrio_phage	1.0e-55	90.4
WP_123012281.1\|664007_665378_+	toxin	Q64EV0	Vibrio_phage	4.1e-204	79.2
WP_123012282.1\|665388_665577_+	hypothetical protein	Q64EU9	Vibrio_phage	1.4e-11	70.4
WP_123012283.1\|666461_666905_+	hypothetical protein	NA	NA	NA	NA
WP_123012284.1\|666895_667012_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_123012285.1\|667126_667675_+	hypothetical protein	NA	NA	NA	NA
WP_000670603.1\|668294_668627_-	hypothetical protein	E3U9J1	Vibrio_phage	7.0e-09	100.0

DBSCAN-SWA_3

1492168 : 1498786

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000864130.1\|1492168_1492639_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.8e-34	48.7
WP_001122865.1\|1492903_1494013_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	6.7e-64	39.8
WP_085603053.1\|1494053_1494707_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.5e-31	38.2
WP_085603051.1\|1494711_1495815_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.5e-44	33.3
WP_000543544.1\|1495840_1496290_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_001891692.1\|1496390_1497644_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.0e-100	49.5
WP_000210573.1\|1497652_1498786_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.4e-64	40.4

DBSCAN-SWA_4

2573578 : 2580842

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085603389.1\|2573578_2574370_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.0e-69	51.6
WP_085603387.1\|2574362_2574989_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.3e-36	52.1
WP_000177561.1\|2574988_2575924_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	7.8e-05	34.7
WP_000116735.1\|2575997_2577005_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.0e-35	34.2
WP_085603449.1\|2577098_2579687_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	2.2e-33	23.0
WP_001279365.1\|2579954_2580842_-	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	4.1e-56	41.1

DBSCAN-SWA_5

2810834 : 2818027

Faustovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_123012682.1\|2810834_2812049_+	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	1.5e-32	30.5
WP_000331703.1\|2812085_2812469_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
WP_000301571.1\|2812529_2812853_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.0e-25	50.5
WP_001105750.1\|2812901_2813417_+	co-chaperone HscB	NA	NA	NA	NA
WP_123012683.1\|2813440_2815291_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.8e-104	40.5
WP_001124187.1\|2815304_2815643_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_000872176.1\|2815691_2815886_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_000107234.1\|2816105_2817395_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	6.5e-34	34.0
WP_001162850.1\|2817598_2818027_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.0e-20	38.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP046738

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

479339 : 491259

Vibrio_phage(44.44%)

integrase,terminase

attL 472202:472216|attR 483491:483505

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
472202:472216	attL	NA	NA	NA	NA
WP_095459089.1\|479339_480563_-\|integrase	site-specific integrase	R9TMP3	Vibrio_phage	4.6e-183	76.7
WP_000083581.1\|480538_480727_-	hypothetical protein	NA	NA	NA	NA
WP_000741597.1\|480732_480996_-	hypothetical protein	NA	NA	NA	NA
WP_000196481.1\|481247_481961_-	helix-turn-helix domain-containing protein	R9TNM0	Vibrio_phage	3.7e-116	85.3
WP_000844441.1\|482036_482231_+	hypothetical protein	R9TPV3	Vibrio_phage	6.9e-25	81.2
WP_123011952.1\|482851_483820_+	helix-turn-helix domain-containing protein	R9TPU9	Vibrio_phage	2.1e-93	57.4
483491:483505	attR	NA	NA	NA	NA
WP_123011953.1\|483883_484702_+	hypothetical protein	NA	NA	NA	NA
WP_123011954.1\|484815_485661_+	hypothetical protein	A0A2R2Z334	Escherichia_phage	1.1e-13	26.0
WP_123011955.1\|485653_487351_+\|terminase	terminase	B0FEF1	Escherichia_phage	3.1e-217	65.6
WP_000983244.1\|487347_489435_+	hypothetical protein	A0A088CE71	Shigella_phage	1.2e-202	58.2
WP_000864710.1\|489595_490003_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1B1ITQ0	uncultured_Mediterranean_phage	3.8e-25	48.3
WP_114733063.1\|490002_491259_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	4.9e-87	41.5

DBSCAN-SWA_2

495702 : 516675

Aeromonas_phage(38.89%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050551874.1\|495702_496041_+	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	3.6e-21	49.5
WP_123011957.1\|496085_497150_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_000697326.1\|497304_497775_-	low molecular weight phosphatase family protein	A0A2H4J8A6	uncultured_Caudovirales_phage	4.0e-18	30.1
WP_001128531.1\|498153_498465_+	membrane protein	R9TR41	Vibrio_phage	2.2e-20	47.4
WP_123011958.1\|498533_499052_+	secretion activator protein	Q6VT55	Vibrio_phage	4.7e-60	63.2
WP_000835321.1\|499495_499717_+	hypothetical protein	NA	NA	NA	NA
WP_000228289.1\|499719_500298_+	hypothetical protein	A0A1V0E8A2	Vibrio_phage	7.9e-24	36.9
WP_123012132.1\|500309_500570_+	hypothetical protein	NA	NA	NA	NA
WP_108347673.1\|500687_501692_+	ATPase	A0A1I9KFD1	Aeromonas_phage	1.2e-22	32.9
WP_069730775.1\|501754_502960_+	DUF4043 family protein	A0A088CC32	Shigella_phage	2.7e-135	58.3
WP_000149718.1\|502974_503355_+	hypothetical protein	M4MCI2	Vibrio_phage	4.7e-09	32.0
WP_000149035.1\|503412_503877_+	hypothetical protein	A0A1I9KFH0	Aeromonas_phage	1.2e-27	57.7
WP_000450573.1\|503879_504479_+	hypothetical protein	A0A1I9KFD5	Aeromonas_phage	4.2e-20	32.3
WP_000117294.1\|504478_505108_+	hypothetical protein	A0A1I9KFD0	Aeromonas_phage	1.5e-23	33.3
WP_123011959.1\|505122_507627_+	right-handed parallel beta-helix repeat-containing protein	A0A240EWW2	Vibrio_phage	3.9e-19	31.2
WP_114741335.1\|507818_509459_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.7e-21	28.3
WP_123011960.1\|509594_511202_+	hypothetical protein	A0A1I9KFD2	Aeromonas_phage	2.7e-130	45.6
WP_123011961.1\|511201_513178_+	DUF1983 domain-containing protein	A0A2L1IV54	Escherichia_phage	3.0e-54	32.9
WP_000989817.1\|513182_513545_+	hypothetical protein	NA	NA	NA	NA
WP_123012133.1\|513585_513927_+	hypothetical protein	NA	NA	NA	NA
WP_123011962.1\|513926_514577_+	hypothetical protein	A0A1I9KFE8	Aeromonas_phage	5.7e-39	44.7
WP_123011963.1\|514580_514958_+	hypothetical protein	A0A1I9KFD7	Aeromonas_phage	6.5e-19	44.6
WP_000331792.1\|514960_515221_+	hypothetical protein	NA	NA	NA	NA
WP_123011964.1\|515220_516675_+	ATPase	M4MHC7	Vibrio_phage	7.3e-42	36.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046737

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP046738

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection