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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP046747 Vibrio cholerae strain 3541-04 chromosome 1, complete sequence 1 crisprs DEDDh,csa3,DinG,WYL,RT,cas3,csx1 0 1 4 0
NZ_CP046748 Vibrio cholerae strain 3541-04 chromosome 2, complete sequence 0 crisprs cas3,csa3 0 0 82 0

Results visualization

1. NZ_CP046747
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046747_1 946527-946770 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP046747_1 1.1|946576|37|NZ_CP046747|PILER-CR 946576-946612 37 NC_049942 Escherichia phage JLK-2012, complete sequence 23524-23560 4 0.892
NZ_CP046747_1 1.1|946576|37|NZ_CP046747|PILER-CR 946576-946612 37 NC_021742 Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence 35428-35464 4 0.892

1. spacer 1.1|946576|37|NZ_CP046747|PILER-CR matches to NC_049942 (Escherichia phage JLK-2012, complete sequence) position: , mismatch: 4, identity: 0.892

taggtcgccagttcgattccggcagccggcaccactt	CRISPR spacer
caggtcgccagttcgattccggtagccggcaccatat	Protospacer
.*********************.***********. *

2. spacer 1.1|946576|37|NZ_CP046747|PILER-CR matches to NC_021742 (Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.892

taggtcgccagttcgattccggcagccggcaccactt	CRISPR spacer
taggtcaccagttcgattccggtagccggcaccaatc	Protospacer
******.***************.*********** *.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 590685 : 597877 9 Anguillid_herpesvirus(16.67%) NA NA
DBSCAN-SWA_2 835040 : 842304 6 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_3 2022793 : 2029287 7 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_4 2885857 : 2893229 9 Vibrio_phage(55.56%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP046748
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 2642 2 Bordetella_phage(100.0%) NA NA
DBSCAN-SWA_2 9129 : 11049 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_3 25487 : 28693 4 Staphylococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_4 41165 : 54814 12 uncultured_Caudovirales_phage(33.33%) NA NA
DBSCAN-SWA_5 68903 : 69377 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_6 73090 : 73729 1 Pseudoalteromonas_phage(100.0%) NA NA
DBSCAN-SWA_7 88885 : 96091 4 Diachasmimorpha_longicaudata_entomopoxvirus(33.33%) NA NA
DBSCAN-SWA_8 105205 : 109290 3 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_9 112591 : 114277 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_10 123371 : 129357 5 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_11 134518 : 136384 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_12 143037 : 144003 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_13 147975 : 152214 4 Morganella_phage(50.0%) NA NA
DBSCAN-SWA_14 155734 : 157609 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_15 162056 : 162836 1 Pithovirus(100.0%) NA NA
DBSCAN-SWA_16 169581 : 182045 11 Cyanophage(40.0%) NA NA
DBSCAN-SWA_17 190273 : 196605 6 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_18 200413 : 204914 4 Morganella_phage(33.33%) NA NA
DBSCAN-SWA_19 208138 : 209419 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_20 229440 : 230421 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_21 237216 : 237702 1 Xanthomonas_phage(100.0%) NA NA
DBSCAN-SWA_22 251169 : 256539 6 Klosneuvirus(33.33%) NA NA
DBSCAN-SWA_23 261007 : 261937 1 Chrysochromulina_ericina_virus(100.0%) NA NA
DBSCAN-SWA_24 265362 : 276945 8 Apis_mellifera_filamentous_virus(20.0%) protease NA
DBSCAN-SWA_25 280516 : 280999 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_26 290644 : 295334 3 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_27 299728 : 320710 21 uncultured_Caudovirales_phage(22.22%) NA NA
DBSCAN-SWA_28 326951 : 327806 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_29 331576 : 337041 4 Invertebrate_iridovirus(50.0%) NA NA
DBSCAN-SWA_30 340679 : 342968 1 Chrysochromulina_ericina_virus(100.0%) NA NA
DBSCAN-SWA_31 346917 : 356215 8 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_32 359355 : 364589 4 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_33 375415 : 382247 3 Chrysodeixis_chalcites_nucleopolyhedrovirus(33.33%) NA NA
DBSCAN-SWA_34 385767 : 388081 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_35 391594 : 392650 1 Organic_Lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_36 408270 : 409302 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_37 417066 : 422809 5 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_38 427608 : 428601 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_39 449175 : 450147 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_40 454595 : 455108 1 Rhodococcus_phage(100.0%) NA NA
DBSCAN-SWA_41 459869 : 468271 9 Cyanophage(25.0%) NA NA
DBSCAN-SWA_42 475474 : 479982 3 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_43 487659 : 488220 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_44 492407 : 494000 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_45 510944 : 522800 16 Vibrio_phage(62.5%) NA NA
DBSCAN-SWA_46 526238 : 526895 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_47 532693 : 538262 4 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_48 546375 : 547332 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_49 561123 : 562617 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_50 566056 : 567919 1 Acanthocystis_turfacea_chlorella_virus(100.0%) NA NA
DBSCAN-SWA_51 574713 : 581053 3 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_52 588621 : 591214 2 Vibrio_virus(50.0%) NA NA
DBSCAN-SWA_53 606319 : 608536 3 Staphylococcus_prophage(50.0%) transposase NA
DBSCAN-SWA_54 635083 : 636043 1 Staphylococcus_prophage(100.0%) transposase NA
DBSCAN-SWA_55 651803 : 652298 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_56 655650 : 656166 1 Morganella_phage(100.0%) NA NA
DBSCAN-SWA_57 661690 : 663030 4 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_58 666744 : 679971 11 Golden_Marseillevirus(20.0%) tRNA NA
DBSCAN-SWA_59 683680 : 688635 3 Stx2-converting_phage(50.0%) NA NA
DBSCAN-SWA_60 694356 : 695028 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_61 698293 : 698992 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_62 710532 : 712996 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_63 721290 : 723936 3 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_64 726962 : 808808 79 Vibrio_phage(73.47%) protease,terminase,portal,integrase,head,capsid,tail,transposase attL 794146:794161|attR 812195:812210
DBSCAN-SWA_65 813719 : 813929 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_66 822613 : 824530 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_67 832959 : 833172 1 Morganella_phage(100.0%) NA NA
DBSCAN-SWA_68 848035 : 848542 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_69 859169 : 862546 2 Hokovirus(50.0%) NA NA
DBSCAN-SWA_70 867906 : 874279 6 Pectobacterium_phage(25.0%) NA NA
DBSCAN-SWA_71 877621 : 879820 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_72 888585 : 965578 62 uncultured_Caudovirales_phage(18.75%) protease,plate,transposase NA
DBSCAN-SWA_73 977838 : 984025 4 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_74 990485 : 991874 1 Wolbachia_phage(100.0%) transposase NA
DBSCAN-SWA_75 997866 : 999963 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_76 1005665 : 1008119 1 Iris_mild_mosaic_virus(100.0%) NA NA
DBSCAN-SWA_77 1012105 : 1014743 2 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_78 1020573 : 1026115 4 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_79 1034746 : 1036207 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_80 1039931 : 1040309 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_81 1048112 : 1055484 5 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_82 1060364 : 1061105 1 Vibrio_virus(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage