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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP046746 Vibrio cholerae strain 3566-08 chromosome 2, complete sequence 0 crisprs cas3,csx1,csa3 0 0 2 0
NZ_CP046745 Vibrio cholerae strain 3566-08 chromosome 1, complete sequence 1 crisprs DinG,DEDDh,WYL,cas3,csa3 0 1 8 0

Results visualization

1. NZ_CP046746
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 615284 : 633052 30 Vibrio_phage(47.62%) NA NA
DBSCAN-SWA_2 818279 : 827627 6 Escherichia_phage(33.33%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP046745
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046745_1 440979-441222 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP046745_1 1.1|441028|37|NZ_CP046745|PILER-CR 441028-441064 37 NC_049942 Escherichia phage JLK-2012, complete sequence 23524-23560 4 0.892
NZ_CP046745_1 1.1|441028|37|NZ_CP046745|PILER-CR 441028-441064 37 NC_021742 Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence 35428-35464 4 0.892

1. spacer 1.1|441028|37|NZ_CP046745|PILER-CR matches to NC_049942 (Escherichia phage JLK-2012, complete sequence) position: , mismatch: 4, identity: 0.892

taggtcgccagttcgattccggcagccggcaccactt	CRISPR spacer
caggtcgccagttcgattccggtagccggcaccatat	Protospacer
.*********************.***********. *

2. spacer 1.1|441028|37|NZ_CP046745|PILER-CR matches to NC_021742 (Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.892

taggtcgccagttcgattccggcagccggcaccactt	CRISPR spacer
taggtcaccagttcgattccggtagccggcaccaatc	Protospacer
******.***************.*********** *.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 112050 : 119243 9 Anguillid_herpesvirus(16.67%) NA NA
DBSCAN-SWA_2 216329 : 271662 45 Bacillus_phage(20.0%) tRNA,integrase,transposase,protease attL 216064:216080|attR 280263:280279
DBSCAN-SWA_3 380366 : 387630 6 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_4 681367 : 689563 7 Micromonas_sp._RCC1109_virus(16.67%) NA NA
DBSCAN-SWA_5 1518117 : 1524729 7 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_6 2018631 : 2101099 94 Vibrio_phage(93.18%) tail,head,terminase,portal,protease,lysis,integrase,capsid attL 2012413:2012429|attR 2078096:2078112
DBSCAN-SWA_7 2104161 : 2115609 22 Vibrio_phage(93.75%) integrase attL 2102109:2102124|attR 2124277:2124292
DBSCAN-SWA_8 2355638 : 2369717 16 Vibrio_phage(68.75%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage