CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046754	Vibrio parahaemolyticus strain 2015AW-0174 chromosome 1, complete sequence	0 crisprs	DEDDh,DinG,cas3,csx1,csa3	0	0	3	0
NZ_CP046753	Vibrio parahaemolyticus strain 2015AW-0174 chromosome 2, complete sequence	0 crisprs	WYL,DEDDh,cas3,cas6f,cas7f,cas5f,csa3	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

439454 : 456852

uncultured_Mediterranean_phage(20.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005455581.1\|439454_441095_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	4.2e-155	52.4
WP_005455579.1\|441173_442475_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	4.2e-134	59.2
WP_005455577.1\|443102_443384_+	cell division protein FtsB	NA	NA	NA	NA
WP_005493934.1\|443385_444090_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	3.4e-05	24.3
WP_005493937.1\|444107_444584_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_005493940.1\|444630_445674_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_005493942.1\|445673_446450_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.6e-66	52.4
WP_005455562.1\|446449_447076_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.3e-35	52.1
WP_005455560.1\|447090_448014_+	peptidoglycan DD-metalloendopeptidase family protein	D7RWE0	Brochothrix_phage	4.1e-06	35.2
WP_005493944.1\|449163_451725_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	4.4e-34	23.9
WP_005493945.1\|451809_452292_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	2.9e-27	48.7
WP_005478550.1\|452492_453536_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	8.1e-112	60.7
WP_005493947.1\|453659_454127_+	recombination regulator RecX	NA	NA	NA	NA
WP_005455546.1\|454269_456852_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.0e-78	37.9

DBSCAN-SWA_2

1746458 : 1755294

Vibrio_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005495398.1\|1746458_1748684_-	ribonuclease R	Q0GXV6	Lactococcus_phage	8.2e-61	31.7
WP_005483265.1\|1748978_1749191_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	2.9e-16	61.2
WP_005495400.1\|1750095_1750299_+	hypothetical protein	NA	NA	NA	NA
WP_005495402.1\|1750521_1750929_-	APSE-2 prophage; Q protein	NA	NA	NA	NA
WP_005495404.1\|1750965_1751367_-	NinG recombination protein/bacteriophage lambda NinG family protein	A0A2I7S3K0	Vibrio_phage	3.7e-20	45.0
WP_005495406.1\|1751356_1751539_-	hypothetical protein	NA	NA	NA	NA
WP_005495408.1\|1751535_1752186_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	7.0e-21	36.5
WP_005495410.1\|1752178_1752559_-	hypothetical protein	NA	NA	NA	NA
WP_005495412.1\|1752555_1753509_-	helix-turn-helix domain-containing protein	A0A1V0E831	Vibrio_phage	3.8e-39	35.3
WP_005495414.1\|1753574_1753793_-	hypothetical protein	NA	NA	NA	NA
WP_005495415.1\|1753789_1754254_-	hypothetical protein	K7PJS5	Enterobacterial_phage	3.0e-18	48.0
WP_005495417.1\|1754273_1754525_-	hypothetical protein	A0A1I9KFF6	Aeromonas_phage	3.8e-07	41.9
WP_079749494.1\|1754496_1755294_+	helix-turn-helix domain-containing protein	G9L676	Escherichia_phage	2.1e-22	37.2

DBSCAN-SWA_3

2461357 : 2468059

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005440184.1\|2461357_2461828_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3
WP_005496254.1\|2461997_2463107_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.5e-63	39.6
WP_005496255.1\|2463276_2463930_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.1e-33	37.0
WP_005496256.1\|2463942_2465067_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.8e-48	36.0
WP_005482986.1\|2465074_2465524_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_005496257.1\|2465651_2466902_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.6e-98	47.9
WP_005483011.1\|2466919_2468059_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.3e-62	41.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP046753

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

834869 : 886320

Vibrio_phage(37.5%)

protease,integrase,transposase

attL 840889:840913|attR 855768:855792

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021448338.1\|834869_839240_+\|protease	SslE/AcfD family lipoprotein zinc metalloprotease	NA	NA	NA	NA
WP_005499492.1\|839350_839755_+	H-NS histone family protein	NA	NA	NA	NA
WP_100198882.1\|839970_840873_+	OspB protein	A0A0P0ZCT1	Stx2-converting_phage	1.2e-29	35.3
840889:840913	attL	NA	NA	NA	NA
WP_021448339.1\|841097_841988_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	1.6e-153	86.9
WP_005499483.1\|842312_842882_-	TDH-related hemolysin TRH1	NA	NA	NA	NA
WP_005499480.1\|843318_844167_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005499478.1\|844313_844940_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.8e-05	27.3
WP_005499477.1\|844936_845629_-	ABC transporter ATP-binding protein	F2Y1V6	Organic_Lake_phycodnavirus	9.8e-05	24.3
WP_005499475.1\|845616_846417_-	ABC transporter permease	NA	NA	NA	NA
WP_023650108.1\|846433_847402_-	ABC transporter permease	NA	NA	NA	NA
WP_005499471.1\|847392_848931_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005499470.1\|849336_850179_+	urease accessory protein ureD	NA	NA	NA	NA
WP_005499469.1\|850196_850499_+	urease subunit gamma	NA	NA	NA	NA
WP_005499468.1\|850509_850833_+	urease subunit beta	NA	NA	NA	NA
WP_005499467.1\|850829_852533_+	urease subunit alpha	NA	NA	NA	NA
WP_005499466.1\|852587_853067_+	urease accessory protein UreE	NA	NA	NA	NA
WP_020842398.1\|853094_853760_+	urease accessory protein UreF	NA	NA	NA	NA
WP_005499462.1\|853768_854407_+	urease accessory protein UreG	NA	NA	NA	NA
WP_080332365.1\|854601_854877_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_021448344.1\|855821_856742_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	1.2e-162	91.1
855768:855792	attR	NA	NA	NA	NA
WP_023650135.1\|856955_857525_+	thermostable direct hemolysin TDH	NA	NA	NA	NA
WP_011106469.1\|857828_857924_+	hypothetical protein	NA	NA	NA	NA
WP_021448345.1\|858196_860023_+	cell motility protein	NA	NA	NA	NA
WP_005499452.1\|861392_861761_+	hypothetical protein	NA	NA	NA	NA
WP_005499450.1\|861977_862502_+	hypothetical protein	NA	NA	NA	NA
WP_021448349.1\|865029_865950_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	2.3e-158	88.5
WP_005499427.1\|867738_868053_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA
WP_025548618.1\|868045_868687_-	hypothetical protein	NA	NA	NA	NA
WP_079748682.1\|870382_871006_-	cupin	NA	NA	NA	NA
WP_005499420.1\|871245_872388_+	hypothetical protein	NA	NA	NA	NA
WP_079748673.1\|872359_873307_+	zinc ABC transporter solute-binding protein	NA	NA	NA	NA
WP_079451942.1\|873303_874113_+	metal ABC transporter permease	NA	NA	NA	NA
WP_101893994.1\|874124_874238_+	hypothetical protein	NA	NA	NA	NA
WP_005499414.1\|874381_875101_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA
WP_005499413.1\|875283_875874_+	hypothetical protein	NA	NA	NA	NA
WP_005499407.1\|877881_878721_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005499405.1\|878804_878987_+	hypothetical protein	NA	NA	NA	NA
WP_005499403.1\|879235_879769_-	diacylglycerol kinase	NA	NA	NA	NA
WP_005499401.1\|879868_880435_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_005499399.1\|880647_881505_+	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA
WP_011106462.1\|881992_882295_+	hypothetical protein	NA	NA	NA	NA
WP_005499397.1\|882931_884101_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	3.4e-82	45.6
WP_005499396.1\|884387_884792_+	cell division protein DamX	NA	NA	NA	NA
WP_005499394.1\|885027_886320_+\|protease	serine protease	V5LS29	Emiliania_huxleyi_virus	4.5e-11	22.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046754

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP046753

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection