CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046768	Vibrio fluvialis strain 2013V-1300 chromosome 2, complete sequence	0 crisprs	RT,csa3,cas3,DEDDh	0	0	1	0
NZ_CP046767	Vibrio fluvialis strain 2013V-1300 chromosome 1, complete sequence	0 crisprs	DEDDh,csa3,DinG,cas3,WYL	0	0	5	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

79446 : 116816

Vibrio_phage(61.76%)

lysis,integrase,capsid,plate,head,transposase,tail

attL 69196:69210|attR 84031:84045

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
69196:69210	attL	NA	NA	NA	NA
WP_047460531.1\|79446_79659_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.6e-19	65.7
WP_158151930.1\|80072_80576_+	c-type cytochrome	NA	NA	NA	NA
WP_158151931.1\|80603_81821_-\|integrase	tyrosine-type recombinase/integrase	R9TMP3	Vibrio_phage	5.6e-197	81.9
WP_044363388.1\|81799_81985_-	hypothetical protein	NA	NA	NA	NA
WP_158151932.1\|82066_82279_-	hypothetical protein	A0A1V0E8D5	Vibrio_phage	6.6e-13	53.1
WP_044363392.1\|82454_83120_-	helix-turn-helix domain-containing protein	A0A1V0E8B5	Vibrio_phage	2.0e-71	61.4
WP_158151933.1\|83235_83472_+	helix-turn-helix domain-containing protein	A0A1V0E8C7	Vibrio_phage	3.7e-20	67.2
WP_158151934.1\|83494_83968_+	hypothetical protein	R9TRN6	Vibrio_phage	1.7e-64	82.8
WP_044363395.1\|83964_84216_+	hypothetical protein	R9TMN6	Vibrio_phage	5.4e-30	78.3
84031:84045	attR	NA	NA	NA	NA
WP_158152489.1\|84375_85887_+	DNA cytosine methyltransferase	A0A1L5C2B8	Pseudoalteromonas_phage	4.4e-183	66.3
WP_158151935.1\|85886_86408_+	DNA methyltransferase	R9TNL7	Vibrio_phage	6.1e-92	87.3
WP_158151936.1\|86407_86695_+	hypothetical protein	NA	NA	NA	NA
WP_158151937.1\|86687_87683_+	ATPase	R9TPU9	Vibrio_phage	4.4e-38	46.4
WP_044363405.1\|87672_87879_+	hypothetical protein	R9TRN3	Vibrio_phage	4.5e-14	50.0
WP_158151938.1\|88105_89104_+	DUF968 domain-containing protein	R9TRM9	Vibrio_phage	1.3e-154	75.6
WP_158151939.1\|89325_90987_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.2e-27	37.7
WP_158151940.1\|91140_91440_+	PAS domain-containing protein	NA	NA	NA	NA
WP_158151941.1\|91358_92536_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	3.7e-121	68.5
WP_158151942.1\|92875_93436_-	SOS response-associated peptidase	NA	NA	NA	NA
WP_158151943.1\|93557_94985_-	hypothetical protein	NA	NA	NA	NA
WP_158151944.1\|95183_95849_+	hypothetical protein	R9TRM8	Vibrio_phage	4.2e-77	63.3
WP_158151945.1\|95976_96168_+	hypothetical protein	A0A1V1FD92	Vibrio_phage	7.8e-13	56.5
WP_158151946.1\|96154_96658_+	glycoside hydrolase family protein	A0A1V0E844	Vibrio_phage	1.9e-50	58.5
WP_158151947.1\|96615_97095_+\|lysis	lysis protein	A0A1P8DTG0	Proteus_phage	7.2e-15	44.2
WP_158151948.1\|97223_97805_+	hypothetical protein	D4HTU0	Vibrio_phage	6.5e-18	35.4
WP_158152490.1\|97782_99684_+	DNA packaging protein	A0A1B0Z2K0	Pseudomonas_phage	6.7e-120	37.8
WP_158151949.1\|99680_99890_+\|tail	phage tail protein	NA	NA	NA	NA
WP_158151950.1\|102814_103147_+\|head	head decoration protein	A0A1I9KF38	Aeromonas_phage	2.2e-10	42.3
WP_158151951.1\|103187_104228_+\|capsid	phage capsid protein	K7PGW9	Enterobacteria_phage	2.0e-70	44.6
WP_158151952.1\|104289_104808_+	hypothetical protein	NA	NA	NA	NA
WP_158151953.1\|104811_105180_+	hypothetical protein	NA	NA	NA	NA
WP_158151954.1\|105227_105830_+	hypothetical protein	R9TR34	Vibrio_phage	2.5e-49	50.5
WP_158151955.1\|106355_106946_+\|plate	phage baseplate assembly protein V	A0A219YA41	Aeromonas_phage	1.4e-28	39.4
WP_158151956.1\|106945_107143_+	hypothetical protein	NA	NA	NA	NA
WP_158151957.1\|107153_107492_+\|plate	phage baseplate protein	A0A088FV58	Escherichia_phage	1.3e-31	59.5
WP_158151958.1\|107488_108376_+\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	8.3e-81	55.0
WP_158151959.1\|108368_108980_+\|tail	phage tail protein I	A0A2H4JAU2	uncultured_Caudovirales_phage	2.0e-54	53.5
WP_158151960.1\|110169_110703_+	hypothetical protein	R9TMQ2	Vibrio_phage	1.5e-37	63.8
WP_158151961.1\|110770_112237_+\|tail	phage tail protein	R9TMQ0	Vibrio_phage	1.4e-114	45.7
WP_158151962.1\|112236_112752_+\|tail	phage tail protein	A0A193GYM4	Enterobacter_phage	4.9e-17	30.4
WP_158151963.1\|112821_113112_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_158151964.1\|113215_115003_+\|tail	phage tail protein	R9TRP8	Vibrio_phage	3.8e-109	41.1
WP_158151965.1\|115002_115407_+	hypothetical protein	R9TMP6	Vibrio_phage	3.3e-29	46.6
WP_158151966.1\|115381_115588_+\|tail	phage tail protein	R9TR63	Vibrio_phage	7.9e-11	46.3
WP_080871149.1\|116660_116816_+	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	1.0e-23	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP046767

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

645979 : 652620

Vibrio_phage(88.89%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158151025.1\|645979_647710_+	response regulator	A0A1V0SGX0	Hokovirus	1.6e-48	34.3
WP_158151860.1\|647935_648292_-	hypothetical protein	Q9MCC3	Vibrio_phage	3.1e-23	51.2
WP_158151027.1\|648470_648638_+	hypothetical protein	NA	NA	NA	NA
WP_158151029.1\|648640_648841_+	hypothetical protein	C3W4P3	Vibrio_phage	9.3e-25	78.5
WP_158151031.1\|648830_649943_+	replication initiation factor family protein	Q64EV8	Vibrio_phage	6.5e-168	77.9
WP_055453530.1\|649915_650254_+	DUF1293 domain-containing protein	Q858R2	Vibrio_phage	1.5e-43	74.1
WP_081035198.1\|650263_650491_+	hypothetical protein	R9TMT7	Vibrio_phage	3.4e-15	57.3
WP_158151033.1\|650519_650735_+	hypothetical protein	R9TRU5	Vibrio_phage	1.1e-12	61.5
WP_158151035.1\|651085_652270_+	hypothetical protein	G8IRU9	Vibrio_phage	2.8e-23	46.8
WP_055453527.1\|652278_652620_+	DUF2523 domain-containing protein	R9TRT6	Vibrio_phage	1.8e-44	75.2

DBSCAN-SWA_2

776227 : 798019

Vibrio_phage(28.57%)

tail,portal,transposase,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158151131.1\|776227_777381_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.3e-82	55.2
WP_158130340.1\|777972_778209_+	zinc-binding protein	NA	NA	NA	NA
WP_158151134.1\|778363_779113_+	hypothetical protein	NA	NA	NA	NA
WP_158151136.1\|779452_780643_+	hypothetical protein	NA	NA	NA	NA
WP_158151138.1\|780639_781578_+\|tail	phage tail protein	NA	NA	NA	NA
WP_158142954.1\|782128_782515_+	hypothetical protein	NA	NA	NA	NA
WP_158151140.1\|782511_783558_+	hypothetical protein	A0A1E1GE19	Vibrio_phage	3.4e-09	24.1
WP_158151142.1\|783539_784070_+	hypothetical protein	NA	NA	NA	NA
WP_158151144.1\|785182_785716_+	hypothetical protein	R9TMQ2	Vibrio_phage	8.3e-28	54.2
WP_158151146.1\|785879_786878_+	hypothetical protein	NA	NA	NA	NA
WP_158151148.1\|786874_787282_+	hypothetical protein	NA	NA	NA	NA
WP_004726819.1\|788060_788312_+	hypothetical protein	A0A1D9C9R8	Salinivibrio_phage	1.2e-08	45.2
WP_158151150.1\|788404_788680_-	hypothetical protein	NA	NA	NA	NA
WP_158151152.1\|788812_789310_-	hypothetical protein	NA	NA	NA	NA
WP_158151154.1\|789874_790492_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	1.6e-22	59.8
WP_158151156.1\|790746_791751_-	LD-carboxypeptidase	NA	NA	NA	NA
WP_140229081.1\|792236_793202_-\|portal	phage portal protein	A0A0M3LS06	Mannheimia_phage	2.8e-58	41.2
WP_158151158.1\|795106_795919_+\|capsid	phage capsid protein	A0A2H4J928	uncultured_Caudovirales_phage	6.3e-19	42.4
WP_158151160.1\|797105_797555_+\|head	head completion/stabilization protein	NA	NA	NA	NA
WP_158142966.1\|797554_798019_+\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_3

1420962 : 1428010

Megavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020330651.1\|1420962_1421394_-	nucleoside-diphosphate kinase	K7YW26	Megavirus	2.6e-19	39.8
WP_158151446.1\|1421463_1422756_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	1.0e-34	40.3
WP_020330649.1\|1422932_1423127_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_020330648.1\|1423182_1423521_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_024374135.1\|1423534_1425388_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	6.5e-112	40.8
WP_020330646.1\|1425409_1425925_-	co-chaperone HscB	NA	NA	NA	NA
WP_020330645.1\|1425992_1426316_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	5.5e-27	54.2
WP_020330644.1\|1426375_1426759_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	9.1e-53	77.4
WP_020330643.1\|1426795_1428010_-	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	1.1e-30	30.5

DBSCAN-SWA_4

1639367 : 1650473

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020429693.1\|1639367_1641950_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.5e-77	37.0
WP_047459347.1\|1642137_1642596_-	recombination regulator RecX	NA	NA	NA	NA
WP_020330433.1\|1642665_1643718_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	4.8e-112	60.7
WP_158146859.1\|1643890_1644379_-	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	3.9e-24	44.5
WP_158151495.1\|1644463_1647025_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.2e-34	23.4
WP_020429689.1\|1647093_1648080_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	1.3e-34	34.5
WP_020429687.1\|1648151_1649087_-	murein hydrolase activator NlpD	I3PV79	Clostridium_phage	2.3e-12	32.8
WP_020429685.1\|1649086_1649713_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.0e-36	53.3
WP_020330427.1\|1649705_1650473_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	9.1e-68	52.8

DBSCAN-SWA_5

2850071 : 2856615

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024373554.1\|2850071_2851205_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	3.6e-65	42.0
WP_158151776.1\|2851216_2852467_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.4e-97	48.5
WP_020331649.1\|2852569_2853019_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_158151777.1\|2853032_2854142_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	6.5e-43	33.1
WP_158142633.1\|2854145_2854799_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.5e-36	40.0
WP_020431928.1\|2854840_2855950_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.8e-62	39.0
WP_004724909.1\|2856144_2856615_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.9e-31	47.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046768

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP046767

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection