CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046777	Vibrio parahaemolyticus strain 2014V-1125 chromosome 2, complete sequence	0 crisprs	csa3,DEDDh,cas3,WYL,cas6f,cas7f,cas5f	0	0	1	0
NZ_CP046778	Vibrio parahaemolyticus strain 2014V-1125 chromosome 1, complete sequence	0 crisprs	DinG,cas3,csx1,csa3,DEDDh	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

249088 : 257924

Vibrio_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005495398.1\|249088_251314_-	ribonuclease R	Q0GXV6	Lactococcus_phage	8.2e-61	31.7
WP_005483265.1\|251608_251821_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	2.9e-16	61.2
WP_005495400.1\|252725_252929_+	hypothetical protein	NA	NA	NA	NA
WP_005495402.1\|253151_253559_-	APSE-2 prophage; Q protein	NA	NA	NA	NA
WP_005495404.1\|253595_253997_-	NinG recombination protein/bacteriophage lambda NinG family protein	A0A2I7S3K0	Vibrio_phage	3.7e-20	45.0
WP_005495406.1\|253986_254169_-	hypothetical protein	NA	NA	NA	NA
WP_005495408.1\|254165_254816_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	7.0e-21	36.5
WP_005495410.1\|254808_255189_-	hypothetical protein	NA	NA	NA	NA
WP_005495412.1\|255185_256139_-	helix-turn-helix domain-containing protein	A0A1V0E831	Vibrio_phage	3.8e-39	35.3
WP_005495414.1\|256204_256423_-	hypothetical protein	NA	NA	NA	NA
WP_005495415.1\|256419_256884_-	hypothetical protein	K7PJS5	Enterobacterial_phage	3.0e-18	48.0
WP_005495417.1\|256903_257155_-	hypothetical protein	A0A1I9KFF6	Aeromonas_phage	3.8e-07	41.9
WP_079749494.1\|257126_257924_+	helix-turn-helix domain-containing protein	G9L676	Escherichia_phage	2.1e-22	37.2

DBSCAN-SWA_2

529719 : 539533

Klosneuvirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005495749.1\|529719_531000_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	2.5e-22	26.4
WP_005495751.1\|531069_531336_-	DksA/TraR family C4-type zinc finger protein	A0A1S6UBD1	Serratia_phage	2.1e-16	48.9
WP_023650089.1\|531888_532788_-	DUF3380 domain-containing protein	K4RM41	Pseudomonas_phage	4.8e-36	43.0
WP_005495761.1\|532990_534298_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.2e-90	42.8
WP_005495763.1\|534389_535739_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.1e-84	42.1
WP_005460060.1\|535745_536372_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_005495766.1\|536446_539533_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	3.8e-88	49.9

DBSCAN-SWA_3

963988 : 970690

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005440184.1\|963988_964459_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3
WP_005496254.1\|964628_965738_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.5e-63	39.6
WP_005496255.1\|965907_966561_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.1e-33	37.0
WP_005496256.1\|966573_967698_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.8e-48	36.0
WP_005482986.1\|967705_968155_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_005496257.1\|968282_969533_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.6e-98	47.9
WP_005483011.1\|969550_970690_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.3e-62	41.7

DBSCAN-SWA_4

2268991 : 2286389

uncultured_Mediterranean_phage(20.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005455581.1\|2268991_2270632_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	4.2e-155	52.4
WP_005455579.1\|2270710_2272012_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	4.2e-134	59.2
WP_005455577.1\|2272639_2272921_+	cell division protein FtsB	NA	NA	NA	NA
WP_005493934.1\|2272922_2273627_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	3.4e-05	24.3
WP_005493937.1\|2273644_2274121_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_005493940.1\|2274167_2275211_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_005493942.1\|2275210_2275987_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.6e-66	52.4
WP_005455562.1\|2275986_2276613_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.3e-35	52.1
WP_005455560.1\|2276627_2277551_+	peptidoglycan DD-metalloendopeptidase family protein	D7RWE0	Brochothrix_phage	4.1e-06	35.2
WP_005493944.1\|2278700_2281262_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	4.4e-34	23.9
WP_005493945.1\|2281346_2281829_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	2.9e-27	48.7
WP_005478550.1\|2282029_2283073_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	8.1e-112	60.7
WP_005493947.1\|2283196_2283664_+	recombination regulator RecX	NA	NA	NA	NA
WP_005455546.1\|2283806_2286389_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.0e-78	37.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP046777

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1475251 : 1526703

Vibrio_phage(37.5%)

transposase,integrase,protease

attL 1481271:1481295|attR 1496150:1496174

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021448338.1\|1475251_1479622_+\|protease	SslE/AcfD family lipoprotein zinc metalloprotease	NA	NA	NA	NA
WP_005499492.1\|1479732_1480137_+	H-NS histone family protein	NA	NA	NA	NA
WP_100198882.1\|1480352_1481255_+	OspB protein	A0A0P0ZCT1	Stx2-converting_phage	1.2e-29	35.3
1481271:1481295	attL	NA	NA	NA	NA
WP_021448339.1\|1481479_1482370_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	1.6e-153	86.9
WP_005499483.1\|1482694_1483264_-	TDH-related hemolysin TRH1	NA	NA	NA	NA
WP_005499480.1\|1483700_1484549_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005499478.1\|1484695_1485322_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.8e-05	27.3
WP_005499477.1\|1485318_1486011_-	ABC transporter ATP-binding protein	F2Y1V6	Organic_Lake_phycodnavirus	9.8e-05	24.3
WP_005499475.1\|1485998_1486799_-	ABC transporter permease	NA	NA	NA	NA
WP_023650108.1\|1486815_1487784_-	ABC transporter permease	NA	NA	NA	NA
WP_005499471.1\|1487774_1489313_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005499470.1\|1489718_1490561_+	urease accessory protein ureD	NA	NA	NA	NA
WP_005499469.1\|1490578_1490881_+	urease subunit gamma	NA	NA	NA	NA
WP_005499468.1\|1490891_1491215_+	urease subunit beta	NA	NA	NA	NA
WP_005499467.1\|1491211_1492915_+	urease subunit alpha	NA	NA	NA	NA
WP_005499466.1\|1492969_1493449_+	urease accessory protein UreE	NA	NA	NA	NA
WP_020842398.1\|1493476_1494142_+	urease accessory protein UreF	NA	NA	NA	NA
WP_005499462.1\|1494150_1494789_+	urease accessory protein UreG	NA	NA	NA	NA
WP_080332365.1\|1494983_1495259_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_021448344.1\|1496203_1497124_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	1.2e-162	91.1
1496150:1496174	attR	NA	NA	NA	NA
WP_023650135.1\|1497337_1497907_+	thermostable direct hemolysin TDH	NA	NA	NA	NA
WP_011106469.1\|1498210_1498306_+	hypothetical protein	NA	NA	NA	NA
WP_021448345.1\|1498578_1500405_+	cell motility protein	NA	NA	NA	NA
WP_005499452.1\|1501774_1502143_+	hypothetical protein	NA	NA	NA	NA
WP_005499450.1\|1502359_1502884_+	hypothetical protein	NA	NA	NA	NA
WP_021448349.1\|1505411_1506332_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	2.3e-158	88.5
WP_005499427.1\|1508120_1508435_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA
WP_025548618.1\|1508427_1509069_-	hypothetical protein	NA	NA	NA	NA
WP_079748682.1\|1510765_1511389_-	cupin	NA	NA	NA	NA
WP_005499420.1\|1511628_1512771_+	hypothetical protein	NA	NA	NA	NA
WP_079748673.1\|1512742_1513690_+	zinc ABC transporter solute-binding protein	NA	NA	NA	NA
WP_079451942.1\|1513686_1514496_+	metal ABC transporter permease	NA	NA	NA	NA
WP_101893994.1\|1514507_1514621_+	hypothetical protein	NA	NA	NA	NA
WP_005499414.1\|1514764_1515484_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA
WP_005499413.1\|1515666_1516257_+	hypothetical protein	NA	NA	NA	NA
WP_005499407.1\|1518264_1519104_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005499405.1\|1519187_1519370_+	hypothetical protein	NA	NA	NA	NA
WP_005499403.1\|1519618_1520152_-	diacylglycerol kinase	NA	NA	NA	NA
WP_005499401.1\|1520251_1520818_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_005499399.1\|1521030_1521888_+	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA
WP_011106462.1\|1522375_1522678_+	hypothetical protein	NA	NA	NA	NA
WP_005499397.1\|1523314_1524484_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	3.4e-82	45.6
WP_005499396.1\|1524770_1525175_+	cell division protein DamX	NA	NA	NA	NA
WP_005499394.1\|1525410_1526703_+\|protease	serine protease	V5LS29	Emiliania_huxleyi_virus	4.5e-11	22.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046778

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP046777

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection