CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046788	Vibrio parahaemolyticus strain 2013V-1174 chromosome 2, complete sequence	1 crisprs	cas5f,cas7f,cas6f,cas3,WYL,csa3,DEDDh	0	0	1	0
NZ_CP046787	Vibrio parahaemolyticus strain 2013V-1174 chromosome 1, complete sequence	0 crisprs	DEDDh,csa3,cas3,RT,DinG,csx1,PD-DExK	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046788_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046788_1

973228-973361

Unclear

Consensus_repeat	Method
GGCGGTCGTCGTGAAGGTGGTTTCCGTGGTAACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046788_1

>merge|NZ_CP046788|1|973228-973361|CRISPRCasFinder
GGTGGTCGCCGTGACGGTGGTCGTCGCGATGGCGGTCGTCGTGAAGGTGGTTTCCGTGGTAACCGCGAAGGTGGTAACCGTGGTGGTGAGCGTCGTGAAGGCGGTCGTCGTGAAGGTGGTTTCCGTGGTAACCG

>NZ_CP046788|1|1|973228-973361|CRISPRCasFinder
GGTGGTCGCCGTGACGGTGGTCGTCGCGATGGCGG	TCGTCGTGAAGGTGGTTTCCGTGGTAACCGCGAAGGTGGTAACCGTGGTGGTGAGCGTCGTGAA
GGCGGTCGTCGTGAAGGTGGTTTCCGTGGTAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046788.1\|WP_025794010.1\|980026_980929_-\|hydroxymethylglutaryl-CoA-lyase	unknown	unknown	gnl\|CDD\|180206
NZ_CP046788.1\|WP_029840303.1\|969173_971180_-\|exoribonuclease-II	unknown	unknown	gnl\|CDD\|179920
NZ_CP046788.1\|WP_031782049.1\|981808_983413_-\|methylcrotonoyl-CoA-carboxylase	unknown	unknown	gnl\|CDD\|178415
NZ_CP046788.1\|WP_031782050.1\|980925_981771_-\|gamma-carboxygeranoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235664
NZ_CP046788.1\|WP_005483343.1\|975306_975432_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046788.1\|WP_029840511.1\|966121_966802_+\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239534
NZ_CP046788.1\|WP_029839342.1\|960671_962138_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP046788.1\|WP_079749870.1\|963852_965409_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP046788.1\|WP_029839344.1\|962151_963606_-\|molybdate-ABC-transporter-ATP-binding-protein-ModF	unknown	unknown	gnl\|CDD\|182852
NZ_CP046788.1\|WP_005482748.1\|959602_960337_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP046788.1\|WP_029840508.1\|966856_967684_-\|phosphate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270371
NZ_CP046788.1\|WP_005485970.1\|983447_984617_-\|isovaleryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173845
NZ_CP046788.1\|WP_017448087.1\|967895_968294_+\|DUF3024-domain-containing-protein	unknown	unknown	gnl\|CDD\|371425
NZ_CP046788.1\|WP_011106309.1\|973565_975167_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
NZ_CP046788.1\|WP_005498481.1\|976936_978250_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|206779
NZ_CP046788.1\|WP_020842262.1\|979439_979991_+\|membrane-protein	unknown	unknown	gnl\|CDD\|227700
NZ_CP046788.1\|WP_029840505.1\|968298_969102_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NZ_CP046788.1\|WP_005485953.1\|978535_979414_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP046788.1\|WP_078554186.1\|965466_965640_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046788.1\|WP_025630943.1\|975464_976658_+\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|183528

Protein	Function_ID	Function_description	E-value
NZ_CP046788.1\|WP_025794010.1\|980026_980929_-\|hydroxymethylglutaryl-CoA-lyase	gnl\|CDD\|180206	PRK05692, PRK05692, hydroxymethylglutaryl-CoA lyase; Provisional.	7.57067e-176
NZ_CP046788.1\|WP_029840303.1\|969173_971180_-\|exoribonuclease-II	gnl\|CDD\|179920	PRK05054, PRK05054, exoribonuclease II; Provisional.	0
NZ_CP046788.1\|WP_005482748.1\|959602_960337_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.22682e-53
NZ_CP046788.1\|WP_031782050.1\|980925_981771_-\|gamma-carboxygeranoyl-CoA-hydratase	gnl\|CDD\|235664	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.	2.69979e-97
NZ_CP046788.1\|WP_031782049.1\|981808_983413_-\|methylcrotonoyl-CoA-carboxylase	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
NZ_CP046788.1\|WP_029840511.1\|966121_966802_+\|MaoC-family-dehydratase	gnl\|CDD\|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	1.45864e-67
NZ_CP046788.1\|WP_029839342.1\|960671_962138_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.90438e-77
NZ_CP046788.1\|WP_025630943.1\|975464_976658_+\|acetate/propionate-family-kinase	gnl\|CDD\|183528	PRK12440, PRK12440, acetate/propionate family kinase.	0
NZ_CP046788.1\|WP_029839344.1\|962151_963606_-\|molybdate-ABC-transporter-ATP-binding-protein-ModF	gnl\|CDD\|182852	PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional.	7.06153e-146
NZ_CP046788.1\|WP_079749870.1\|963852_965409_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	2.63407e-62
NZ_CP046788.1\|WP_029840508.1\|966856_967684_-\|phosphate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.9009e-85
NZ_CP046788.1\|WP_017448087.1\|967895_968294_+\|DUF3024-domain-containing-protein	gnl\|CDD\|371425	pfam11225, DUF3024, Protein of unknown function (DUF3024). This family of proteins has no known function.	5.55354e-20
NZ_CP046788.1\|WP_011106309.1\|973565_975167_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	7.92154e-91
NZ_CP046788.1\|WP_005498481.1\|976936_978250_+\|PAS-domain-S-box-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	3.78527e-45
NZ_CP046788.1\|WP_020842262.1\|979439_979991_+\|membrane-protein	gnl\|CDD\|227700	COG5413, COG5413, Uncharacterized integral membrane protein [Function unknown].	1.25715e-23
NZ_CP046788.1\|WP_029840505.1\|968298_969102_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	7.72668e-25
NZ_CP046788.1\|WP_005485953.1\|978535_979414_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	5.12613e-12
NZ_CP046788.1\|WP_005485970.1\|983447_984617_-\|isovaleryl-CoA-dehydrogenase	gnl\|CDD\|173845	cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.	0

>NZ_CP046788.1|WP_029840303.1|969173_971180_-|exoribonuclease-II
MFQDNPLLAQLKQQIQENLPKKEGSIKATDKGFGFLEVDSKTSFFIPPAYMKKCIHGDKVVAIIRTENEREVAEPQELIEQSLTRFIGRVKMFKGKLNVVPDHPQLKKLSLKAKLKKGLKPDNFAEGDWIVAHLVRHPLKGDNTFFVEISEKITDADDKIAPWWVTLAQNDLPNSEPAGIENWELKDDADLERIDMTHVPFVTIDGESTKDMDDALYAKKTESGDFELTIAIADPTAYITPEDEMDKVARERGYTIYLPGRNIPMLPRDLADNLCSLIEGEIRPAICCTVTVSKDGVIGDDIKFFAANIKSHARLAYDHVSDWLENGNSDAWQPSEEIATIVRDLYEFSLARAEWREKNAVVFPDRPDYRFELSEDNDVIAIHADMRRSANRLVEESMITANICAGRTLREKFETGVFNTHAGLKPEKIEEVVQLVNPEGTLEFTAESIATLEGFAALRRWLAVQETSYLDNRIRKFQAYSEVGNQPLPHYAMGLDIYATWTSPIRKYGDMINHRMLKAVILDKEPVQKPDDQVGEELALHRKHHKIAERNVSDWLYARTLADEPSKQTCFTGEIFDINRAGARVRLLENGAAAFIPGALILDNKERIECNGDNGTISIDKEVVYKLGDTLEIVLADVNQENRSLVAKPTQVFADQPAAQTEQTVSEE
>NZ_CP046788.1|WP_029840505.1|968298_969102_-|helix-turn-helix-domain-containing-protein
MPNIEIIRFNHFTARKSERYTATHNGLYVVEEGALVIHQPNGEQFELQAGDFTLYNSSDLRSAEAIPGENGFKAVALVFDISLFCEFKKAHPGLHSEAEHRRFYPFSPESISEVTQLKNTLLALASRNAPDYTQSHIAMALLSLMVEVQPDILSIIDDASSLTASQKAIKYIEKNIEKDITLEGLAAHMSMSIATLKRRLAAENLSFSQILKVKRINYAATQLRVSQKSITEIAFESGFKSAAHFSTAFKSIYNITPKDFRNQVVRG
>NZ_CP046788.1|WP_017448087.1|967895_968294_+|DUF3024-domain-containing-protein
MALGCILKTTYQENVMSVSQMATSRLYKLVQILCSARNANLPVEQGKCLYEPIENGVELHHAHFLLDSQHSEYTSPIAKILFDSQTQLWRFYVPASRSEEIRWIPYKKLPHSHTLEDLLAELESDPQACFWE
>NZ_CP046788.1|WP_029840508.1|966856_967684_-|phosphate-ABC-transporter-substrate-binding-protein
MLRFTVATLLAMAVSLPSAMAKEVNISGSTSVARVMDVLAEEYNKTHPDNYIAVQGIGSSAGITMVNKGVVKLGMSSRYLTESEKGEDLNVFPIAYDGLAVVVNRTNSVTNLSAQQLFDIYKGEIKYWKEVGGADQPIAVVTREASSGSRYSFESLLGLTKIINDRLVSDISPNNLVVNSNSMVKTIVNHNTRAIGFISVGSVDLSVKAIQFNGIEPTAANIANHKYKLARPFLVLYKVDSLDQAGKDFVAFLKSEAGQKTIADYGYIPVKNFNQ
>NZ_CP046788.1|WP_029840511.1|966121_966802_+|MaoC-family-dehydratase
MKVTNLFKDKVDAISAHQSEFMNWMSPTLRDYWSDFLGKAQNSFLFSNVRDHNQPAVNEEVAPQPAPIVLQPEAQKLYDELIGKIGEVIHTGDWVHVSQERINQFGAVTEDMQWIHTDPKRASVESPFKTTIAHGFLTLALLPKLTDSVDADKPLFPTAKLVVNLGLNQVRFPYPVKAGNNVRAVSTLTKVTPIKKGLEIEREIKVEIEGVRRPGAVVVSVIQLHF
>NZ_CP046788.1|WP_078554186.1|965466_965640_+|hypothetical-protein
MVTQNTNFSPEQPKNKKDEQQNVAIVEFNSSVLSRQSTDFLTHEELKMLEAVIGIAF
>NZ_CP046788.1|WP_079749870.1|963852_965409_+|methyl-accepting-chemotaxis-protein
MYMSEKEYDYPASYSLVSITDPSSYIKYASAHFNEVAGFEEGELIGKPHNVVRHPDMPKQAFKDLWSHLKAGKHWMGMVKNRRKNGGYYWVDAFASPIKYNGEIVEYQSVRFKPERIYVKRAEKAYAKLRNDKKPLQLYLPRTRLWMRAAFFLFISNFLGLLLLEMNQSPMLAFSAAALLSALSIYMLTRPIEKLAKQARQDFNNPLMEYIYCGKVNDLAEIELAMKMRKQFANALLGRVGVSVKDSCEETKTNADSAADNSERVTENLSAQKIEIDSVATAVNEMQASSSEISHNAQATADATLKAQNTMTDSRNVIDNVNHSVLDLVGELGEISKVVMRLNQQTDQIGTVIEVINGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAKRTQESTTEIKSAIESIQHGSKSAVSALEKGNEMSTGTVTLLGTALESIQQLESLIQDVVERNQQIAVAIEEQVYVTDEINENIQSLNLKYSESYDLMTETNQMNSRVQNCTNELSDMIKKFA
>NZ_CP046788.1|WP_029839344.1|962151_963606_-|molybdate-ABC-transporter-ATP-binding-protein-ModF
MAIRFSQLAVQGHTTTLSINEWTIDNNDSWGIFSAEGDIGSLLGDLLCGELKPTQGTLDLGELKVAQVSLSEQQRLLERELEKDDTDFLDRIDQGSTVYALIFECCQDAATTERLLQELDLHHLKQSGFRVLSTGETRRVMLARALATQPDLVLLDNPFVGLDVAHRASLATYLHSLSQSVQMLITFSRESDMPEWIDHVALFNAGSLDSTMNKESWDNHPIIEQIKSQSQKQSEEMMGLIRRHQHSTHFDDPIFELKNGQVEYTEKRIFTDLNWRIDKGQHWQVKGPNGCGKSTLLGLIFGDHPQCYSNDIHIFGKKRGSGESIWEIKQHIGMISSALHLQYRVNCNALEVILSGFYDSIGLYNQPSRKEIDVAKEWLDILHMRHYEKTSFKQLEYGQQRLLLIARAIVKQPTLLILDEPYQGLDFLGRRLVKNTLELIAHENLSQLLYVSHYQEDSLENIKNDLEFVFDDEAQCYRAQIHHW
>NZ_CP046788.1|WP_029839342.1|960671_962138_+|EAL-domain-containing-protein
MLNKMLLKKAAIFFLPLPLVFAEVLYLAHESVQSNLDHLLEKNIQIADEILFQIETENRTALIHPERCEQLQQNLMFERDIDEMLIVKGDEIICSSKLGHLSKPLSEYLTFTPNHALTFGQINGLDEPLLLVVTQGQQAYKAITIIDRDYFGATIGFNNDLRLKRSALFVHDDVVPAGASRKGTNPIAFNESKVFEYQALAEASDLFVEQKLISYIIYSVPIIAMIYLCLYALNKFVDPQRNLLAELKKALKKNELTLYYQPQIDVESGRVFGYEALIRWEHQQKGFIAPDEFVPAAEQNGLVSLLTDYVLEKAADDFSKLTFTHPVHLGVNVPPGYLVGSHVIRKLQLIHRKLSENNVSLGIEITERQLINEEARKHIAALRVHGIDVLIDDFGTGQTSLAFLQHMKIDYLKIDKCFVETIGIQSVSASVLNAIVHFADELQVKLIAEGVETPAQAEHLKNMGVQNHQGYLYSKPLPYSLLAQQPIS
>NZ_CP046788.1|WP_005482748.1|959602_960337_-|IclR-family-transcriptional-regulator
MTLNKANANQVNEKALQLLMQVAVSQFPVSAKTLSEQLNVPLSSLYRHLKLLKEWNLIEESVHDKTFVVGPAALLLMHSYETAQHGLDMVETILARLVQQTGEMAAYMVPSGYRALCVRQKESMQALRCSFVQGQSQPLLRGASSKVMLAFMPQSRCEKILRYFSQDHRLDEWEEELATIRKNGYAVSTSEIDPGVSGISAPVMKGSKLVGAVSVMAPAHRVEKDKQRIILHVLQAARALPPER
>NZ_CP046788.1|WP_011106309.1|973565_975167_-|bifunctional-diguanylate-cyclase/phosphodiesterase
MPTIAFLLVILGLILLCWGWQMTKNICSKTEVPGWTWLLMLISCFIFAYAAFLHAIMKKPVASLLETGVSLLLFGGSIFVVLVIKWSNDSILELHSVAEREKRNAVHDSLTGLPNRKYCFELIDDRIQSGDPFSVILFDVVNFKQVNDAMGHFCGDQLLIQIGQRLQDKLKGSDKIFRVGGDEFVILTSSACEKTGTELIESLDCALSARFHLDEFQVSSRVVFGISTYPYDAISNDLLIKHADIAMYHAKRNGNLFAFYHDDMNVGAKYQLEISSRIQCALEKEEFQLYYQPLIDANTNLAVGFEAVIRWHDENGKTISPNDFIPIAERSNQVHNITMWVLGQVEKDLKTFIEKGIKLPVHVNLSAKDLSSNLLFHRLEKLLENNPQFADLISLEITETMAIDRVVELNPLIHQIKGLGIKISLDDFGTGYSSLSLLRDLPVDQIKIDRSFLCTANRTEGSRSIVENTIALAHGLGYSVVAEGVQDMDTLYFLRSRGCDIIQGYLFCPALPLNEVINWVNEHDDKQSHTRRA
>NZ_CP046788.1|WP_005483343.1|975306_975432_-|hypothetical-protein
MRFRAAYFLFAPLLFNNFLIFQQSFSESDLIEQILLIYSKF
>NZ_CP046788.1|WP_025630943.1|975464_976658_+|acetate/propionate-family-kinase
MSNSFVLVINSGSSSLKFAVIDSVSGDAVLSGLGECFGLSDARMSWKFNGEKKEISIEGDDSHHKIAIGKLVGLTEELGLAQDIVAVGHRIVHGGEKFTKTVRITEEVTQEIEKLADLAPLHNPAGAIGIRAAVEAFPSLPQFAVFDTAFHQTMPQRAFTGAIAKELYTDFGIRRYGFHGTSHYFVSREAAKMINKPIEESSFISVHLGNGASVCAINNGESVDTSMGFTPLSGLMMGTRCGDLDPGIIEYLLKKGWSQEKVFNSLNKASGFLGVSGLTSDARGILEAMEEGHEGAALAFQVFTYRVSKYIASYLAALDSFDGIIFTGGIGENSMPIRREILKNLKLLGFVEDAKGNEDARFGNAGVIATSELLGAKALVIPTNEEWVIAQQSVELL
>NZ_CP046788.1|WP_005498481.1|976936_978250_+|PAS-domain-S-box-protein
MFFNKSLQQENQRLKQELYSLQQIQQSLDEEMLRLTLDAKGNVTSANQKFLQQLSLSDKDILAKHISDLVPSNVRNTDHFYRMKQSVQAKAFWNGAFQITKGDGEEAWLRVVIQPVRNTSDQVESFFVFASELTRTITTSREYEDMLNALSRSMAVIEFTLDGTVLKANDNFLSTMGYKHEQIVGKHHRIFCLPEEANSSAYHDFWKRLASGQFVTDRFKRVDQYGSVVWLEASYNPIHNDRGELYKVVKFATNITQQVLQEQSMAQAAQLANEVSQETGTQTVQGRQVIGSTLEKMQTLSEQMQQANAAIEDLKAHSSKISELVNSISGIADQTNLLALNAAIEAARAGDHGRGFAVVADEVRQLAMRTNTTTDEIVSMVTENLERTNNAVALISQCQKEALDTLELSEKAGNVMNDIQDGASRVVEAVAQFNRTL
>NZ_CP046788.1|WP_005485953.1|978535_979414_+|DMT-family-transporter
MFNSERKATVILVATTMIAALGWIFSKETIQGLPPFGFIGLRFTIASLCLLPLCYRPLKAARLKDVLAASGVGLLLGGAVMTWIYAISISDTLGEGAFIMSLSMLFVPIVAWVMFQQRPQRIFWISLPIAVIGLACLSLAGGWKQSASQLWFLGAALILALHFNVNSKYSQKLPVLLLTCVQLFSAGCLGLLVSFLMESRPEQVDSSIWWWFALSTLLATSLRYVMQTMGQKFVQAGNAALIMILEPVWTVVLSILWYGEVLTANKLVGCLLILFSLVIYRTGGRFRFPKRA
>NZ_CP046788.1|WP_020842262.1|979439_979991_+|membrane-protein
MANTEHQETLDFLDKLSVCLYRAGISVFAIALLGLAALESQWLDGMDGRYRAVFAVFAISGAMSASNIHVYSKSVRTIISWSGWIGVILMVCDPELNRVWLALGFIFVTFSGIALKESFCFKVLGLKLVPTLLVVTTFTLWFEQSTIVAISALLAGLIMAYLSIAKWRMPLHFDIGIKANYEV
>NZ_CP046788.1|WP_025794010.1|980026_980929_-|hydroxymethylglutaryl-CoA-lyase
MTLPTNVNIVEVGPRDGLQNESPVSARTKIRLIDLLSDTGLSHIEAGSFVSPKWVPQMADSKEVMQNITRRASVTYSALTPNLQGLEQALDAGANQVAIFTSTSEGFCQHNINCSIAESLKRFEPLMVQADKYHIPVRGYLSCVVDCPYDGATSPTQVANISQALIELGCYEVSLGDTIGTGTPNRIKEMLESVLARIPNQRLAVHFHDTWGQALANIYQALSMGINTVDSSVAGLGGCPYAHGASGNVATEDVLYLCQGLGIETGVDLELLAKAGWMISDELQRQPTSKVSQALRHRME
>NZ_CP046788.1|WP_031782050.1|980925_981771_-|gamma-carboxygeranoyl-CoA-hydratase
MQERQPSIVPNAQRHNDVLWQVDEFGVATLTLNRTKKHNAFDACMIDLIIHRLDYLALRTDVRCLVLRSNGKHFSSGADLAWMQSMANSTRKENLVDAQSLARLMETLDAFPQPTIAVVQGSAFGGALGLICCSDIAIASNSAQFCLSEVKLGLVPATITPYVMRAMGNRQARRYILSGEVIPAVKAQQFGIVHEVKKDDELESCVSEVVASLLLNSPDAMRKAKALCEQCHQNPIDSQLIRYTSQLIADIRVSPQGQDGLQAFLEKRPPSWVHQPDAEEE
>NZ_CP046788.1|WP_031782049.1|981808_983413_-|methylcrotonoyl-CoA-carboxylase
MAIIKSKTKPTDELFLSNQAAMEMLVEKLQKDIATIKLGGGERAIAHQRQKGKLPVRERISHLLDDGSNFLEIGQFAAWQVYDESIPCAGVVAGIGMIEGVQCMVIANDPSVKGGTYYPLTVKKHLRAQEIAQRCQLPCVYLVDSGGANLPHQSDVFPDKDHFGRIFFNQARMSAKGIPQIAVVMGLCTAGGAYVPAMADVSIMVKEQGTIFLAGPPLVKAATGEIVTGEELGGADVHCRKSGVADYYAENDEHALDLAREAIANANRPKPPKSNSAILPPRYDAEEMYGIVNANLRLSFDVREIIARIVDDSDFDEFKALYGRTLVCGFARIHGQLIGIVANNGILFSDSSQKGAHFIELCAKRKTPLLFLQNITGFMVGKKVEEEGIAKHGAKLVMAVACADVPKFTVIIGGSYGAGNYGMCGRAYDPTMMWMWPNARISVMGGEQAAGVLTQVRKEINQRRGEEWSEQEEHTFKESIIDLYETQGHPYFASARLWDDGIIDPKETRNVLAQALMAALNAPIPDSEFGIFRM
>NZ_CP046788.1|WP_005485970.1|983447_984617_-|isovaleryl-CoA-dehydrogenase
MKTSYIPLNFGLGETIDMLRDHVNAFASEHIAPIAADIDHYNQFPSHLWPLLGEMGLLGVTVSEEYGGAEMGYLAHVVAMEEISRASASVALSYGAHSNLCVNQIFRNGTPTQREKYLPKLVDGSHIGALAMSEVNSGSDVVSMQLKAEDKGDHFLLNGTKMWITNGPDADVVVVYAKTDADAGSRGITAFIVERSFTGFSDAQKLDKLGMRGSNTSELVFNNCKVPKENILGALNCGVEVLMSGLDYERVVLAAGPLGIMQACMDIVVPYVHERKQFGKSIGEFQLVQGKLADMYSRMNAAKAYVYTVAAACDRGECTRKDAAGVILYSAELATQMALDAIQLLGGNGYINEYATGRLLRDAKLYEIGAGTSEIRRMLIGRELFEESR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1294656 : 1302903

Vibrio_phage(85.71%)

coat

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029850291.1\|1294656_1295025_-	hypothetical protein	R9TE55	Vibrio_phage	3.1e-42	71.1
WP_025505236.1\|1295224_1295497_+	hypothetical protein	NA	NA	NA	NA
WP_031781773.1\|1295496_1297527_+	replication endonuclease	A0A0F6YPA7	Vibrio_phage	5.9e-199	53.5
WP_012841822.1\|1297610_1297916_+	hypothetical protein	Q2PZB5	Vibrio_virus	8.1e-20	51.0
WP_021448020.1\|1298186_1298450_+\|coat	phage major coat, Gp8 family protein	R9TI50	Vibrio_phage	6.3e-05	40.3
WP_031829312.1\|1298520_1300101_+	chemotaxis protein	NA	NA	NA	NA
WP_012841818.1\|1300100_1300460_+\|coat	minor coat protein	R9TIT8	Vibrio_phage	4.1e-23	45.6
WP_031781681.1\|1300459_1301533_+	hypothetical protein	O80263	Vibrio_phage	6.0e-126	62.8
WP_031781680.1\|1301550_1302903_+	type II secretory pathway protein	R9TEZ5	Vibrio_phage	1.0e-122	59.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP046787

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1077377 : 1084079

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005483011.1\|1077377_1078517_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.3e-62	41.7
WP_024703710.1\|1078534_1079785_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	9.5e-99	47.9
WP_005482986.1\|1079912_1080362_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_031829244.1\|1080369_1081494_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.0e-48	35.6
WP_005483039.1\|1081506_1082160_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.6e-33	37.5
WP_005496254.1\|1082329_1083439_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.5e-63	39.6
WP_005440184.1\|1083608_1084079_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3

DBSCAN-SWA_2

1154822 : 1227993

Vibrio_phage(89.58%)

tRNA,head,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005481362.1\|1154822_1155296_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_005496155.1\|1155352_1156468_-	23S rRNA pseudouridine(2604) synthase RluF	NA	NA	NA	NA
WP_005481355.1\|1156567_1157149_-	DNA endonuclease SmrA	NA	NA	NA	NA
WP_005489851.1\|1157280_1157421_-	DUF3149 domain-containing protein	NA	NA	NA	NA
WP_025579334.1\|1157926_1158799_-	TraB/GumN family protein	NA	NA	NA	NA
WP_011105712.1\|1159204_1159312_+	hypothetical protein	NA	NA	NA	NA
WP_031782098.1\|1159359_1162011_+	family 20 glycosylhydrolase	NA	NA	NA	NA
WP_005453980.1\|1162447_1163140_+	porin	NA	NA	NA	NA
WP_025632338.1\|1163204_1163654_-	DUF411 domain-containing protein	NA	NA	NA	NA
WP_031782191.1\|1163675_1166411_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	4.8e-103	36.5
WP_079749952.1\|1166678_1166822_-	hypothetical protein	NA	NA	NA	NA
WP_029830711.1\|1166886_1168008_+	chitoporin	NA	NA	NA	NA
WP_074534723.1\|1168133_1168727_+	DUF2057 domain-containing protein	NA	NA	NA	NA
WP_005482241.1\|1168905_1170330_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_011105715.1\|1170750_1170870_-	hypothetical protein	NA	NA	NA	NA
WP_029839625.1\|1170967_1171927_+	OmpA family protein	NA	NA	NA	NA
WP_100550210.1\|1172058_1172136_+	hypothetical protein	NA	NA	NA	NA
WP_017448769.1\|1172169_1172751_-	hypothetical protein	NA	NA	NA	NA
WP_005496141.1\|1173201_1174335_-	hypothetical protein	NA	NA	NA	NA
WP_005382013.1\|1174505_1175144_+	membrane protein	NA	NA	NA	NA
WP_005453982.1\|1175153_1175585_+	flagellar assembly lipoprotein FlgP	NA	NA	NA	NA
WP_005454011.1\|1175697_1176123_-	molecular chaperone	NA	NA	NA	NA
WP_005453996.1\|1176149_1176467_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA
WP_005486752.1\|1176594_1177341_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_005462297.1\|1177417_1178344_+	chemotaxis protein CheV	Q56AR1	Bacillus_thuringiensis_phage	8.7e-33	32.6
WP_005462295.1\|1178355_1179183_+	protein-glutamate O-methyltransferase	NA	NA	NA	NA
WP_005462294.1\|1179495_1179891_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA
WP_005462293.1\|1179896_1180310_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA
WP_005462292.1\|1180327_1181035_+	flagellar hook assembly protein FlgD	NA	NA	NA	NA
WP_005462291.1\|1181066_1182380_+	flagellar hook protein FlgE	NA	NA	NA	NA
WP_077672902.1\|1182468_1182555_-	hypothetical protein	NA	NA	NA	NA
WP_005462290.1\|1182673_1183423_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA
WP_005382032.1\|1183441_1184230_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA
WP_005462288.1\|1184260_1185040_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA
WP_005454020.1\|1185084_1186176_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA
WP_025510600.1\|1186192_1187119_+	flagellar assembly peptidoglycan hydrolase FlgJ	A0A088F6W1	Sulfitobacter_phage	2.7e-18	36.6
WP_031829246.1\|1187280_1189221_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA
WP_005482245.1\|1189234_1190428_+	flagellar hook-associated protein FlgL	NA	NA	NA	NA
WP_101892229.1\|1190506_1190611_-	hypothetical protein	NA	NA	NA	NA
WP_005462278.1\|1190863_1192018_+	flagellin	NA	NA	NA	NA
WP_158132099.1\|1193792_1195679_-	hypothetical protein	M4M9L1	Vibrio_phage	2.2e-22	68.5
WP_158132101.1\|1195699_1196287_-	DUF2313 domain-containing protein	M4M9M8	Vibrio_phage	1.7e-90	79.7
WP_158132103.1\|1196271_1197339_-\|plate	phage baseplate protein	M4MHE1	Vibrio_phage	1.8e-170	83.1
WP_126609510.1\|1197328_1197781_-	hypothetical protein	M4MB61	Vibrio_phage	8.0e-64	81.9
WP_158132106.1\|1197783_1198389_-\|plate	phage baseplate assembly protein V	A0A2I7S9F6	Vibrio_phage	6.4e-93	84.8
WP_158132108.1\|1198389_1199487_-\|tail	phage tail protein	A0A2I7S9G1	Vibrio_phage	1.8e-170	81.0
WP_158132110.1\|1199479_1200799_-	multidrug DMT transporter permease	A0A2I7S9E8	Vibrio_phage	2.3e-167	67.6
WP_155483492.1\|1200810_1202487_-	tape measure protein	A0A2I7S9D9	Vibrio_phage	4.4e-192	66.5
WP_050926347.1\|1202603_1202975_-	hypothetical protein	A0A2I7S9E0	Vibrio_phage	1.5e-44	71.5
WP_158132112.1\|1202974_1203328_-\|tail	phage tail protein	A0A2I7S9D5	Vibrio_phage	6.5e-45	72.6
WP_158132114.1\|1203343_1204822_-\|tail	phage tail protein	M1Q565	Vibrio_phage	1.1e-252	88.0
WP_158132117.1\|1204824_1205127_-	DUF2635 domain-containing protein	A0A2I7S9K4	Vibrio_phage	2.4e-08	51.7
WP_158132119.1\|1205354_1205945_-	hypothetical protein	A0A2I7S9D4	Vibrio_phage	1.3e-85	76.0
WP_140268632.1\|1205941_1206484_-	phage virion morphogenesis protein	A0A2I7S9D7	Vibrio_phage	2.1e-79	79.9
WP_062853632.1\|1206483_1206918_-	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	1.1e-67	88.9
WP_158132121.1\|1206936_1207521_-	hypothetical protein	M4M9M3	Vibrio_phage	5.9e-19	48.6
WP_065870383.1\|1207548_1208088_-	hypothetical protein	M1Q569	Vibrio_phage	3.6e-55	63.6
WP_158132123.1\|1208090_1208348_-	hypothetical protein	NA	NA	NA	NA
WP_062853633.1\|1208426_1209326_-\|head	phage head protein	A0A2I7S9D0	Vibrio_phage	5.2e-139	79.9
WP_158132125.1\|1209325_1210303_-	peptidase	M1Q578	Vibrio_phage	5.6e-115	63.1
WP_158132127.1\|1210604_1211384_-	hypothetical protein	A0A2I7S9F9	Vibrio_phage	3.9e-127	80.9
WP_158132129.1\|1211376_1212939_-	DUF935 family protein	M4M9P3	Vibrio_phage	9.3e-237	78.2
WP_069537613.1\|1212935_1214498_-	hypothetical protein	M4MHG0	Vibrio_phage	2.4e-232	77.5
WP_062853638.1\|1214618_1214810_-	hypothetical protein	M4MB75	Vibrio_phage	6.0e-13	57.6
WP_158132131.1\|1214809_1215376_-	DUF3486 family protein	A0A2I7S9D1	Vibrio_phage	4.0e-65	68.1
WP_065870376.1\|1215385_1215679_-	hypothetical protein	A0A2I7S9D8	Vibrio_phage	1.5e-39	83.3
WP_136677190.1\|1215687_1215993_-	DUF2730 family protein	M4M9P7	Vibrio_phage	2.1e-12	42.3
WP_062853642.1\|1215992_1216208_-	TraR/DksA family transcriptional regulator	M4MHG5	Vibrio_phage	6.1e-22	68.6
WP_086371288.1\|1216207_1216804_-	hypothetical protein	M4MB79	Vibrio_phage	4.1e-44	55.7
WP_078557802.1\|1216788_1217061_-	hypothetical protein	A0A2I7S9C2	Vibrio_phage	1.1e-20	56.5
WP_140268653.1\|1217060_1217627_-	peptidoglycan-binding protein	A0A2I7S9B9	Vibrio_phage	1.1e-73	72.6
WP_065870374.1\|1217713_1218115_-	transcriptional regulator	M4MHG9	Vibrio_phage	2.3e-54	77.9
WP_158132133.1\|1218183_1218660_-	hypothetical protein	NA	NA	NA	NA
WP_158132135.1\|1218652_1219168_-	DUF1018 domain-containing protein	A0A2I7S9B8	Vibrio_phage	6.5e-62	68.6
WP_062853648.1\|1219171_1219351_-	hypothetical protein	A0A2I7RZD1	Vibrio_phage	2.2e-17	69.5
WP_062853649.1\|1219359_1219596_-	hypothetical protein	M4M9N5	Vibrio_phage	1.8e-19	57.7
WP_158132137.1\|1219684_1219885_-	hypothetical protein	NA	NA	NA	NA
WP_158132139.1\|1219884_1220418_-	hypothetical protein	A0A2P9JZH6	Alteromonadaceae_phage	1.9e-24	43.4
WP_158132147.1\|1220414_1220687_-	DUF3850 domain-containing protein	A0A059T7N3	Listeria_phage	1.9e-12	53.2
WP_158132149.1\|1220683_1221250_-	DNA methyltransferase	U3PDF3	Vibrio_phage	4.0e-65	64.8
WP_158132151.1\|1221246_1221474_-	hypothetical protein	M4MCS5	Vibrio_phage	1.2e-20	68.6
WP_065870369.1\|1221466_1221685_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_062853654.1\|1221677_1221950_-	hypothetical protein	M1PJ71	Vibrio_phage	1.7e-24	63.6
WP_158132153.1\|1221962_1222580_-	DUF3164 family protein	M4MHH7	Vibrio_phage	3.8e-85	79.9
WP_158132155.1\|1222569_1222764_-	hypothetical protein	NA	NA	NA	NA
WP_158132157.1\|1222773_1223097_-	hypothetical protein	A0A2I7S9B1	Vibrio_phage	8.6e-20	48.6
WP_158132159.1\|1223089_1223464_-	hypothetical protein	NA	NA	NA	NA
WP_153993905.1\|1223472_1223625_-	hypothetical protein	NA	NA	NA	NA
WP_065870364.1\|1223628_1223868_-	hypothetical protein	NA	NA	NA	NA
WP_065870363.1\|1223876_1224824_-	AAA family ATPase	M4M9P4	Vibrio_phage	1.4e-150	86.3
WP_158132169.1\|1224859_1226854_-	DDE endonuclease	A0A2I7S9A8	Vibrio_phage	2.4e-306	77.4
WP_078557818.1\|1226860_1227085_-	transcriptional regulator	A0A2I7S995	Vibrio_phage	1.2e-28	85.1
WP_158132171.1\|1227258_1227993_+	helix-turn-helix domain-containing protein	A0A2I7S9A5	Vibrio_phage	4.5e-109	78.5

DBSCAN-SWA_3

3124881 : 3142289

uncultured_Mediterranean_phage(20.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005455546.1\|3124881_3127464_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.0e-78	37.9
WP_005455548.1\|3127606_3128074_-	recombination regulator RecX	NA	NA	NA	NA
WP_005478550.1\|3128197_3129241_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	8.1e-112	60.7
WP_029839426.1\|3129441_3129924_-	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.3e-27	48.7
WP_005478546.1\|3130008_3132570_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.3e-33	23.7
WP_029840169.1\|3133719_3134643_-	peptidoglycan DD-metalloendopeptidase family protein	D7RWE0	Brochothrix_phage	4.1e-06	35.2
WP_005455562.1\|3134657_3135284_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.3e-35	52.1
WP_025575295.1\|3135283_3136060_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.3e-66	52.8
WP_005478539.1\|3136059_3137103_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_005455572.1\|3137149_3137626_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_005455574.1\|3137643_3138348_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	3.4e-05	22.9
WP_029840165.1\|3138349_3138631_-	cell division protein FtsB	NA	NA	NA	NA
WP_005455579.1\|3139268_3140570_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	4.2e-134	59.2
WP_005455581.1\|3140648_3142289_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	4.2e-155	52.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046788

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP046787

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection