CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046794	Vibrio metschnikovii strain 9502-00 chromosome 2, complete sequence	0 crisprs	csa3	0	0	67	0
NZ_CP046793	Vibrio metschnikovii strain 9502-00 chromosome 1, complete sequence	2 crisprs	DinG,csa3,cas1,cas3-cas2,cas7f,cas5,cas6f,DEDDh,csx1,cas3	0	4	8	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 9652

Orpheovirus(50.0%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154171139.1\|435_1128_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004396588.1\|1233_1641_+	lactoylglutathione lyase	NA	NA	NA	NA
WP_158145020.1\|1731_2085_+	hypothetical protein	NA	NA	NA	NA
WP_158145021.1\|2117_3164_+	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_158145022.1\|3235_4780_-	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_004396583.1\|5140_5578_-	DUF3069 domain-containing protein	NA	NA	NA	NA
WP_158145023.1\|5850_7419_-	alkyl hydroperoxide reductase subunit F	A0A2I2L5E1	Orpheovirus	3.1e-38	33.8
WP_158145024.1\|7598_8156_-	alkyl hydroperoxide reductase subunit C	NA	NA	NA	NA
WP_158145025.1\|8404_9652_+\|protease	trypsin-like serine protease	Q6JPG5	Neodiprion_lecontei_nucleopolyhedrovirus	1.1e-25	30.2

DBSCAN-SWA_2

16610 : 19233

Vibrio_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145030.1\|16610_18731_+	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	2.1e-268	64.2
WP_158145031.1\|18765_19233_+	anaerobic ribonucleoside-triphosphate reductase-activating protein	A0A2D0YLR2	Vibrio_phage	2.7e-51	58.9

DBSCAN-SWA_3

26715 : 33008

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145037.1\|26715_27858_+	exonuclease subunit SbcD	L0LAJ8	Bacillus_phage	3.4e-10	28.3
WP_158145038.1\|27861_30906_+	AAA family ATPase	G3MAB6	Bacillus_virus	9.3e-07	23.6
WP_154171116.1\|30959_33008_+	response regulator	Q6XM27	Feldmannia_irregularis_virus	6.3e-07	29.9

DBSCAN-SWA_4

38852 : 44421

uncultured_Caudovirales_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004396491.1\|38852_39380_+	NUDIX domain-containing protein	A0A2H4J8B3	uncultured_Caudovirales_phage	3.3e-29	48.5
WP_004396489.1\|39507_40011_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_158145041.1\|40050_40239_-	hypothetical protein	NA	NA	NA	NA
WP_154171112.1\|40356_40794_+	NINE protein	M4ZS56	Bacillus_phage	2.8e-05	45.1
WP_158145042.1\|40870_42103_-	MFS transporter	NA	NA	NA	NA
WP_158145043.1\|42774_44421_-	EAL domain-containing protein	G3MA91	Bacillus_virus	1.9e-22	37.4

DBSCAN-SWA_5

50684 : 51389

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145049.1\|50684_51389_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	8.4e-36	39.6

DBSCAN-SWA_6

60355 : 61123

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004396438.1\|60355_61123_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.2e-13	25.5

DBSCAN-SWA_7

64520 : 68345

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145057.1\|64520_65153_-	aldolase	A0A077SK32	Escherichia_phage	1.6e-70	62.6
WP_158145058.1\|65149_66406_-	hypothetical protein	A0A077SLJ7	Escherichia_phage	2.7e-138	61.0
WP_158137313.1\|66408_67314_-	NAD-binding protein	A0A077SLF7	Escherichia_phage	1.1e-107	71.2
WP_072671148.1\|67574_68345_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	4.0e-55	47.6

DBSCAN-SWA_8

74447 : 76043

Klosneuvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158137317.1\|74447_76043_+	ABC-F family ATPase	A0A1V0SKJ1	Klosneuvirus	8.2e-55	27.4

DBSCAN-SWA_9

95386 : 96364

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154171069.1\|95386_96364_+	TerC/Alx family metal homeostasis membrane protein	K7QKE8	Escherichia_phage	1.5e-30	31.2

DBSCAN-SWA_10

108706 : 113323

Pandoravirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145075.1\|108706_109978_+	aminotransferase class V-fold PLP-dependent enzyme	A0A0B5JD48	Pandoravirus	3.0e-15	25.8
WP_004396324.1\|110357_110522_-	YoaH family protein	NA	NA	NA	NA
WP_158145076.1\|110562_111726_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_158137342.1\|111784_112660_-	DUF2861 family protein	NA	NA	NA	NA
WP_154171055.1\|112663_113323_-	response regulator	W8CYM9	Bacillus_phage	7.9e-28	33.8

DBSCAN-SWA_11

118941 : 122088

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145079.1\|118941_120177_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	9.6e-11	28.3
WP_158145080.1\|120330_122088_+	diguanylate cyclase	G3MA91	Bacillus_virus	2.1e-19	34.2

DBSCAN-SWA_12

128320 : 130109

Escherichia_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158143699.1\|128320_129082_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	8.7e-79	59.5
WP_158143698.1\|129068_130109_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.0e-73	42.6

DBSCAN-SWA_13

145028 : 153841

Escherichia_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158143699.1\|145028_145790_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	8.7e-79	59.5
WP_158143698.1\|145776_146817_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.0e-73	42.6
WP_158145097.1\|147480_147972_-	hypothetical protein	NA	NA	NA	NA
WP_154171044.1\|148224_148509_-	hypothetical protein	NA	NA	NA	NA
WP_158145098.1\|148657_149200_-	hypothetical protein	NA	NA	NA	NA
WP_158145099.1\|149252_149363_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_158145100.1\|149380_150382_+	hypothetical protein	A5LH79	Enterobacteria_phage	1.6e-40	36.1
WP_062907537.1\|151392_151830_-	helix-turn-helix domain-containing protein	A0A0P0IRJ4	Acinetobacter_phage	2.1e-21	38.3
WP_045570177.1\|151840_152182_-	DUF4258 domain-containing protein	NA	NA	NA	NA
WP_158145101.1\|152664_152802_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_158144381.1\|152881_153841_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	5.1e-44	38.1

DBSCAN-SWA_14

161913 : 172035

Virus_Rctr41k(20.0%)

tRNA,integrase

attL 157105:157120|attR 165255:165270

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
157105:157120	attL	NA	NA	NA	NA
WP_158145106.1\|161913_162876_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	4.3e-59	42.9
WP_004397165.1\|162923_163277_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_004397162.1\|163318_163513_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_083797783.1\|163613_164165_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	3.2e-14	40.7
WP_004397152.1\|164168_166097_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	6.7e-128	37.1
165255:165270	attR	NA	NA	NA	NA
WP_115152560.1\|166302_168264_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.4e-51	34.8
WP_004397149.1\|168787_169750_+	OmpA family protein	NA	NA	NA	NA
WP_158145107.1\|170031_172035_+	exoribonuclease II	Q0GXV6	Lactococcus_phage	1.1e-27	23.6

DBSCAN-SWA_15

181032 : 183013

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145110.1\|181032_181998_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.0e-12	26.7
WP_158137041.1\|181987_183013_+	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-24	34.4

DBSCAN-SWA_16

187065 : 192923

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154170948.1\|187065_187452_-	cupin domain-containing protein	A0A068F3J9	Mycobacterium_phage	2.0e-15	44.6
WP_158145113.1\|187461_188727_-	diaminobutyrate--2-oxoglutarate transaminase	A0A1V0SKB7	Klosneuvirus	7.0e-17	21.8
WP_154171235.1\|188738_189305_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA
WP_158145114.1\|189580_189913_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_158137045.1\|189902_190697_-	phenylalanine 4-monooxygenase	NA	NA	NA	NA
WP_158145115.1\|190940_192923_+	acetoacetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	6.5e-25	24.1

DBSCAN-SWA_17

197954 : 198428

Xanthomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004397071.1\|197954_198428_+	cell division protein DedD	A0A292GIT0	Xanthomonas_phage	7.6e-25	40.4

DBSCAN-SWA_18

203579 : 203792

Morganella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004397054.1\|203579_203792_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.3e-19	64.3

DBSCAN-SWA_19

207779 : 210426

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145122.1\|207779_208541_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	6.3e-13	25.1
WP_158145123.1\|208547_209498_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_158145124.1\|209487_210426_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4IY97	uncultured_Caudovirales_phage	8.5e-68	43.3

DBSCAN-SWA_20

214900 : 215740

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154170933.1\|214900_215740_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.4e-58	49.6

DBSCAN-SWA_21

227105 : 232506

Bacillus_thuringiensis_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040905299.1\|227105_228032_+	chemotaxis protein CheV	Q56AR1	Bacillus_thuringiensis_phage	1.2e-21	26.4
WP_115342686.1\|228190_229150_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.2e-16	34.1
WP_004397005.1\|229272_229851_-	malate synthase	NA	NA	NA	NA
WP_004397004.1\|230009_231542_+	DUF3612 domain-containing protein	NA	NA	NA	NA
WP_158145481.1\|231894_232506_+	alpha-ketoglutarate-dependent dioxygenase AlkB	A0A0N9PVM8	Port-miou_virus	8.6e-21	36.3

DBSCAN-SWA_22

244896 : 248033

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158137072.1\|244896_245949_-	3-deoxy-7-phosphoheptulonate synthase AroG	A0A218MA87	Escherichia_phage	1.7e-80	47.4
WP_158145137.1\|246326_248033_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	6.0e-88	35.9

DBSCAN-SWA_23

254407 : 255637

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083797791.1\|254407_255637_-	peptidoglycan DD-metalloendopeptidase family protein	G9BW84	Planktothrix_phage	8.6e-20	43.1

DBSCAN-SWA_24

260124 : 261465

Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145144.1\|260124_261465_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.3e-40	27.6

DBSCAN-SWA_25

268465 : 271192

Only_Syngen_Nebraska_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145146.1\|268465_271192_-	HAD-IC family P-type ATPase	A0A1J0FA34	Only_Syngen_Nebraska_virus	3.6e-74	29.2

DBSCAN-SWA_26

275574 : 276837

Serratia_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158137088.1\|275574_276837_+\|tRNA	tyrosine--tRNA ligase	A0A1S6UA79	Serratia_phage	3.2e-86	43.1

DBSCAN-SWA_27

288332 : 289079

Vibrio_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145158.1\|288332_289079_+	nicotinamide riboside transporter PnuC	A0A126HGA3	Vibrio_phage	7.8e-24	32.0

DBSCAN-SWA_28

307744 : 310344

Chrysochromulina_ericina_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145173.1\|307744_308791_-	GMP reductase	A0A0N9Q9A5	Chrysochromulina_ericina_virus	7.9e-99	53.9
WP_154170882.1\|309345_310344_+	2-hydroxyacid dehydrogenase	M1HUW8	Acanthocystis_turfacea_Chlorella_virus	1.5e-67	43.3

DBSCAN-SWA_29

314328 : 314538

Lactococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004396923.1\|314328_314538_+	cold-shock protein	Q9AZD3	Lactococcus_phage	7.5e-17	68.3

DBSCAN-SWA_30

324478 : 326392

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145179.1\|324478_326392_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.4e-31	43.3

DBSCAN-SWA_31

339318 : 340527

Musca_hytrovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040905244.1\|339318_340527_+	NupC/NupG family nucleoside CNT transporter	B2YG43	Musca_hytrovirus	7.4e-24	26.4

DBSCAN-SWA_32

344839 : 352299

Diachasmimorpha_longicaudata_entomopoxvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145188.1\|344839_346210_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.3e-56	36.4
WP_158145189.1\|346338_347223_-	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_158145190.1\|347574_348225_+	hypothetical protein	NA	NA	NA	NA
WP_158145191.1\|348484_349087_+	cell filamentation protein Fic	S4TP71	Salmonella_phage	4.8e-08	30.0
WP_158145192.1\|349242_350340_-	transporter	NA	NA	NA	NA
WP_158145193.1\|350667_352299_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	4.2e-14	54.8

DBSCAN-SWA_33

376772 : 380210

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145211.1\|376772_380210_-	transporter substrate-binding domain-containing protein	A0A1V0SGX0	Hokovirus	7.5e-29	27.4

DBSCAN-SWA_34

384624 : 386091

Vibrio_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145217.1\|384624_386091_-	secretin	R9TEZ5	Vibrio_phage	2.7e-12	23.3

DBSCAN-SWA_35

391777 : 393037

Megavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004396887.1\|391777_393037_-	adenylosuccinate synthetase	A0A2P1EKE7	Megavirus	9.1e-49	31.3

DBSCAN-SWA_36

396608 : 397775

Euproctis_pseudoconspersa_nucleopolyhedrovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145225.1\|396608_397775_-	Spindolin	C3TWS8	Euproctis_pseudoconspersa_nucleopolyhedrovirus	2.1e-28	35.5

DBSCAN-SWA_37

401120 : 406556

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145228.1\|401120_402122_-	substrate-binding domain-containing protein	C6ZCU4	Enterobacteria_phage	3.8e-34	29.5
WP_158145229.1\|402135_403056_-	ribokinase	NA	NA	NA	NA
WP_158145230.1\|403123_404002_-	ribose ABC transporter substrate-binding protein RbsB	C6ZCU4	Enterobacteria_phage	5.1e-06	23.1
WP_004396879.1\|404067_405051_-	ribose ABC transporter permease	NA	NA	NA	NA
WP_158137158.1\|405047_406556_-	ribose ABC transporter ATP-binding protein RbsA	A0A2H4PQG7	Staphylococcus_phage	2.9e-17	25.9

DBSCAN-SWA_38

410915 : 411863

Clostridium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145231.1\|410915_411863_-	peptidoglycan DD-metalloendopeptidase family protein	I3PV79	Clostridium_phage	5.8e-16	40.4

DBSCAN-SWA_39

417573 : 420738

Lactobacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145234.1\|417573_418341_+	potassium channel protein	A0A1B0Y2S3	Lactobacillus_phage	1.1e-07	42.4
WP_158145235.1\|418420_418987_-	phosphoribosyl-AMP cyclohydrolase	M4QRU0	Micromonas_pusilla_virus	2.6e-19	35.3
WP_158145496.1\|419142_420738_+	HAMP domain-containing protein	Q6XLU9	Feldmannia_irregularis_virus	3.1e-09	22.0

DBSCAN-SWA_40

430456 : 435790

uncultured_Caudovirales_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145243.1\|430456_431983_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	8.0e-15	35.9
WP_158145244.1\|432058_432796_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_158145245.1\|432928_433666_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_158145246.1\|433762_434950_-	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	2.8e-52	34.7
WP_158145247.1\|435133_435790_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.5e-39	41.8

DBSCAN-SWA_41

441965 : 451845

Bordetella_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115152766.1\|441965_442778_-	helix-turn-helix transcriptional regulator	A0A291LAM3	Bordetella_phage	3.6e-06	37.8
WP_154170824.1\|443214_444318_+	PEGA domain-containing protein	NA	NA	NA	NA
WP_158145250.1\|444476_446294_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	2.0e-12	26.5
WP_004396844.1\|446359_446995_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_158145251.1\|447100_448774_-	DUF342 domain-containing protein	NA	NA	NA	NA
WP_158145252.1\|448931_450650_-	SpoIIE family protein phosphatase	Q8QKY1	Ectocarpus_siliculosus_virus	4.9e-05	28.3
WP_158145253.1\|450981_451845_-	NAD-binding protein	A0A077SLF7	Escherichia_phage	3.0e-27	28.7

DBSCAN-SWA_42

457325 : 459522

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040905504.1\|457325_458543_+	ParA family protein	Q1MVJ3	Enterobacteria_phage	2.2e-31	27.1
WP_004396835.1\|458550_459522_+	ParB/RepB/Spo0J family partition protein	Q7Y3Y7	Yersinia_phage	1.4e-20	29.1

DBSCAN-SWA_43

464616 : 470824

uncultured_Caudovirales_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145255.1\|464616_466560_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.2e-18	27.5
WP_158145256.1\|466792_468337_+	cryptochrome/photolyase family protein	A0A1V0SE91	Indivirus	5.7e-45	28.8
WP_004396829.1\|468336_469044_+	SDR family oxidoreductase	Q56AQ6	Bacillus_thuringiensis_phage	6.2e-31	38.1
WP_158145257.1\|469171_469480_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_154170816.1\|469576_470824_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.5e-22	36.0

DBSCAN-SWA_44

476826 : 479280

Iris_mild_mosaic_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145258.1\|476826_479280_+	glycogen/starch/alpha-glucan family phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	3.7e-14	42.5

DBSCAN-SWA_45

488049 : 492790

Orgyia_leucostigma_nucleopolyhedrovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145261.1\|488049_490596_+	chitinase	B0FDP2	Orgyia_leucostigma_nucleopolyhedrovirus	3.4e-151	48.5
WP_158145262.1\|490903_492790_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	5.0e-19	50.8

DBSCAN-SWA_46

497915 : 499760

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145266.1\|497915_499760_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.9e-31	26.2

DBSCAN-SWA_47

509946 : 511527

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145271.1\|509946_511527_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.3e-15	39.5

DBSCAN-SWA_48

516897 : 519134

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145275.1\|516897_517710_+	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.7e-14	28.6
WP_158145276.1\|517706_519134_+	deoxyribodipyrimidine photo-lyase	A0A1V0SGL1	Hokovirus	5.1e-56	30.3

DBSCAN-SWA_49

526517 : 529518

Vibrio_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145281.1\|526517_527132_-	triacylglycerol lipase	A0A2I7SAF7	Vibrio_phage	1.2e-17	33.2
WP_158145282.1\|527199_527916_-	NUDIX hydrolase	NA	NA	NA	NA
WP_158145283.1\|528210_529518_+	nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	6.8e-39	29.6

DBSCAN-SWA_50

546391 : 553118

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145296.1\|546391_549964_+	transporter substrate-binding domain-containing protein	A0A1V0SGX0	Hokovirus	1.8e-38	31.0
WP_158145297.1\|550119_550956_+	EAL domain-containing protein	NA	NA	NA	NA
WP_154170783.1\|551008_552361_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_004396773.1\|552656_553118_-	DNA starvation/stationary phase protection protein	W5S6G8	Pithovirus	6.3e-16	34.4

DBSCAN-SWA_51

556664 : 562626

Diadromus_pulchellus_ascovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145300.1\|556664_557528_-	MBL fold metallo-hydrolase	F2NZ47	Diadromus_pulchellus_ascovirus	2.5e-18	26.2
WP_158145301.1\|557653_558556_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_158145302.1\|558945_560394_-	decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase	E3SJC4	Synechococcus_phage	5.2e-32	31.4
WP_154170777.1\|560407_561124_-	6-phosphogluconolactonase	NA	NA	NA	NA
WP_158145303.1\|561120_562626_-	glucose-6-phosphate dehydrogenase	M4SIY3	Cyanophage	8.2e-89	38.3

DBSCAN-SWA_52

569128 : 576463

Vibrio_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145307.1\|569128_570799_-	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	4.6e-32	32.2
WP_158145308.1\|571360_572611_+	thermolabile hemolysin	NA	NA	NA	NA
WP_099610908.1\|572878_574075_+	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	1.0e-41	30.2
WP_004396757.1\|574071_575106_+	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	1.6e-22	96.2
WP_158145309.1\|575190_575940_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_004396755.1\|576226_576463_-	hypothetical protein	U3PCF7	Vibrio_phage	1.9e-16	55.1

DBSCAN-SWA_53

584590 : 588811

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004396722.1\|584590_585118_-	spermidine N1-acetyltransferase	O64026	Bacillus_phage	5.5e-08	28.2
WP_154170763.1\|585217_586636_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A1X9I5H2	Streptococcus_phage	8.4e-19	25.6
WP_158145316.1\|586731_587634_+	EamA family transporter	NA	NA	NA	NA
WP_004396719.1\|587689_588811_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	G3M9Y6	Bacillus_virus	2.4e-24	31.9

DBSCAN-SWA_54

608297 : 609077

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145332.1\|608297_609077_-	heme ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.2e-13	27.6

DBSCAN-SWA_55

617647 : 626041

Stx2-converting_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154171212.1\|617647_618814_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	2.1e-84	46.3
WP_004396691.1\|619097_619442_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158145507.1\|620080_621277_-	PAS domain S-box protein	A0A2H4J162	uncultured_Caudovirales_phage	1.8e-09	49.0
WP_158145334.1\|621593_623174_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	2.9e-20	23.9
WP_004396689.1\|623502_623976_+	NYN domain-containing protein	NA	NA	NA	NA
WP_004396688.1\|623964_624156_-	DUF2986 domain-containing protein	NA	NA	NA	NA
WP_158145336.1\|624258_625413_-	MFS transporter	NA	NA	NA	NA
WP_040905111.1\|625606_626041_-	thioredoxin TrxC	A0A191VYI2	Roseobacter_phage	3.0e-12	40.7

DBSCAN-SWA_56

632252 : 633107

Acanthocystis_turfacea_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145344.1\|632252_633107_+	MIP family channel protein	M1HJ75	Acanthocystis_turfacea_Chlorella_virus	1.3e-11	30.5

DBSCAN-SWA_57

636957 : 644328

Mythimna_unipuncta_granulovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158137233.1\|636957_637239_+	GIY-YIG nuclease family protein	A0A1S5YDY6	Mythimna_unipuncta_granulovirus	2.0e-12	45.3
WP_158145348.1\|637289_638387_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_158145350.1\|638408_640976_+	response regulator	A0A1V0SGX0	Hokovirus	1.1e-48	32.6
WP_040905104.1\|641039_641564_-	hypothetical protein	NA	NA	NA	NA
WP_158137236.1\|641753_642536_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_158145352.1\|643215_644328_+	molybdenum ABC transporter ATP-binding protein ModC	G9BWD6	Planktothrix_phage	1.7e-22	34.0

DBSCAN-SWA_58

648505 : 651200

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145356.1\|648505_650569_+	DNA helicase IV	A7KV33	Bacillus_phage	2.5e-19	25.8
WP_004396667.1\|650582_651200_+	bifunctional nicotinamidase/pyrazinamidase	A0A2K9L6K4	Tupanvirus	1.0e-21	34.3

DBSCAN-SWA_59

656508 : 662475

Chrysodeixis_chalcites_nucleopolyhedrovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145363.1\|656508_659385_+	chitinase	Q4KT15	Chrysodeixis_chalcites_nucleopolyhedrovirus	2.2e-26	25.8
WP_158145365.1\|659467_660682_-	glucose-1-phosphate adenylyltransferase	I7I009	Enterobacteria_phage	7.5e-08	24.0
WP_158145367.1\|661074_662475_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.7e-17	30.1

DBSCAN-SWA_60

671260 : 672892

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145379.1\|671260_672892_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.3e-10	64.1

DBSCAN-SWA_61

679393 : 685054

Diadromus_pulchellus_ascovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145391.1\|679393_680518_-	acyl-CoA desaturase	F2NZ38	Diadromus_pulchellus_ascovirus	3.3e-34	34.1
WP_158145393.1\|680707_681328_+	beta-phosphoglucomutase family hydrolase	M1HXP3	Paramecium_bursaria_Chlorella_virus	1.1e-07	24.5
WP_158145395.1\|681435_681906_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_154171180.1\|681921_682548_-	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_158145396.1\|682700_683327_+	OmpA family protein	NA	NA	NA	NA
WP_158145398.1\|683494_685054_+	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	8.6e-33	46.8

DBSCAN-SWA_62

688412 : 694591

Cyanophage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145404.1\|688412_689363_-	transaldolase	M4SIN4	Cyanophage	8.7e-12	27.9
WP_004396638.1\|689850_690840_+	sugar-binding transcriptional regulator	NA	NA	NA	NA
WP_158145406.1\|690880_691711_-	sulfurtransferase	NA	NA	NA	NA
WP_154171173.1\|691790_692543_-	molybdopterin-synthase adenylyltransferase MoeB	S4VW33	Pandoravirus	3.2e-09	36.0
WP_158145408.1\|692551_693787_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_004396634.1\|693937_694591_+	GTP cyclohydrolase I FolE	Q6WI31	Vibrio_phage	2.6e-55	55.6

DBSCAN-SWA_63

698229 : 702034

Morganella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004396631.1\|698229_698442_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.6e-19	64.3
WP_004396630.1\|698754_698991_-	RNA-binding protein	NA	NA	NA	NA
WP_158145414.1\|699169_702034_-	aminomethyl-transferring glycine dehydrogenase	E3SN07	Prochlorococcus_phage	2.5e-272	52.4

DBSCAN-SWA_64

705270 : 706377

Emiliania_huxleyi_virus(100.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145416.1\|705270_706377_+\|protease	trypsin-like serine protease	G4Y9Z9	Emiliania_huxleyi_virus	5.6e-10	25.7

DBSCAN-SWA_65

711154 : 721769

Staphylococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145424.1\|711154_712942_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	6.6e-29	42.3
WP_158145426.1\|712941_714432_-	N-6 DNA methylase	J7I0U9	Acinetobacter_phage	3.5e-31	30.9
WP_158145428.1\|714572_715898_-	multidrug transporter	NA	NA	NA	NA
WP_158145430.1\|715901_717188_-	hypothetical protein	NA	NA	NA	NA
WP_158145513.1\|717244_719689_-	DEAD/DEAH box helicase family protein	Q6NDX2	Leptospira_phage	2.0e-20	27.8
WP_154171156.1\|720054_720696_-	hypothetical protein	NA	NA	NA	NA
WP_158145432.1\|721295_721769_-	hypothetical protein	A0A2I7SAK3	Vibrio_phage	5.7e-20	38.5

DBSCAN-SWA_66

728937 : 729633

Anomala_cuprea_entomopoxvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004396609.1\|728937_729633_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.4e-13	28.8

DBSCAN-SWA_67

734926 : 746414

Tupanvirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158145447.1\|734926_735952_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	2.1e-83	48.0
WP_158145449.1\|736105_737530_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	5.1e-08	78.6
WP_154171146.1\|737761_738967_-	amino acid permease	NA	NA	NA	NA
WP_154171145.1\|739573_740836_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.7e-55	35.0
WP_158145451.1\|740894_741674_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_154171143.1\|741793_742309_-	NUDIX domain-containing protein	Q5ULM8	Lactobacillus_virus	1.3e-06	33.3
WP_158145453.1\|742645_744295_+	DUF3763 domain-containing protein	A0A2H4PB07	Aphanizomenon_phage	4.1e-33	30.7
WP_158145455.1\|744308_745751_+	ATPase RavA stimulator ViaA	A7KV72	Bacillus_phage	8.0e-09	22.4
WP_040905069.1\|745754_746414_-	hypothetical protein	M4PMR5	Vibrio_phage	4.8e-25	34.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP046793

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046793_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046793_1

294242-294809

Unclear

I-F

Consensus_repeat	Method
GTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRT

9 spacers

cas6f,cas5,cas7f,cas3-cas2,cas1

The CRISPR arrays of NZ_CP046793_1

>merge|NZ_CP046793|1|294242-294809|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGCACAGGCAGCTTAGAAACCTCATCGATAACAAAGGCTAAATCGCATTTAGTTCACTGCCGCACAGGCAGCTTAGAAAATGATTCATGTGCTGATTGCTAATAGTTGGTGGTTCACTGCCGCACAGGCAGCTTAGAAAAAAATGACCAACACCGCGAGAATCACGGCATAGTTCACTGCCGCACAGGCAGCTTAGAAAGTTCTCACTAAGCCAAACTGCTCAGCGTTTTGGTTCACTGCCGCACAGGCAGCTTAGAAATCCATTAGTCGATTGCGGAAGTTGATACCCAAGTTCACTGCCGCACAGGCAGCTTAGAAAGTTCTGGTCGCTCCCGATAAGCACTGGGGCGGGTTCACTGCCGCACAGGCAGCTTAGAAAGATCTTTGAGGTAAGAGATAATTTATCAATATGTTCACTGCCGCACAGGCAGCTTAGAAATTGCTCTGATAACATGGCAAAAGAAGACATACGTTCACTGCCGCACAGGCAGCTTAGAAATTTGAAAGTGACTCATCGAGTTAACGGGAAAGGTTCACTGCCGCACAGGCAGCTTAGAAA

>NZ_CP046793|1|1|294242-294809|PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCTCATCGATAACAAAGGCTAAATCGCATTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGATTCATGTGCTGATTGCTAATAGTTGGTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAAATGACCAACACCGCGAGAATCACGGCATA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTCTCACTAAGCCAAACTGCTCAGCGTTTTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCCATTAGTCGATTGCGGAAGTTGATACCCAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTCTGGTCGCTCCCGATAAGCACTGGGGCGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	GATCTTTGAGGTAAGAGATAATTTATCAATAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTGCTCTGATAACATGGCAAAAGAAGACATAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTTGAAAGTGACTCATCGAGTTAACGGGAAAG
GTTCACTGCCGCACAGGCAGCTTAGAAA

>NZ_CP046793|1|1|294242-294809|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCTCATCGATAACAAAGGCTAAATCGCATTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGATTCATGTGCTGATTGCTAATAGTTGGTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAAATGACCAACACCGCGAGAATCACGGCATA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTCTCACTAAGCCAAACTGCTCAGCGTTTTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCCATTAGTCGATTGCGGAAGTTGATACCCAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTCTGGTCGCTCCCGATAAGCACTGGGGCGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	GATCTTTGAGGTAAGAGATAATTTATCAATAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTGCTCTGATAACATGGCAAAAGAAGACATAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTTGAAAGTGACTCATCGAGTTAACGGGAAAG
GTTCACTGCCGCACAGGCAGCTTAGAAA

>NZ_CP046793|1|1|294242-294809|CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCTCATCGATAACAAAGGCTAAATCGCATTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGATTCATGTGCTGATTGCTAATAGTTGGTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAAATGACCAACACCGCGAGAATCACGGCATA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTCTCACTAAGCCAAACTGCTCAGCGTTTTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCCATTAGTCGATTGCGGAAGTTGATACCCAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTCTGGTCGCTCCCGATAAGCACTGGGGCGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	GATCTTTGAGGTAAGAGATAATTTATCAATAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTGCTCTGATAACATGGCAAAAGAAGACATAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTTGAAAGTGACTCATCGAGTTAACGGGAAAG
GTTCACTGCCGCACAGGCAGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046793.1\|WP_158143841.1\|305032_306388_+\|DASH-family-cryptochrome	unknown	unknown	gnl\|CDD\|274288
NZ_CP046793.1\|WP_158139046.1\|285047_285710_-\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP046793.1\|WP_158143836.1\|297946_299236_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236724
NZ_CP046793.1\|WP_158143837.1\|299245_299944_-\|response-regulator	unknown	unknown	gnl\|CDD\|236738
NZ_CP046793.1\|WP_158143840.1\|302104_304906_+\|TolB	unknown	unknown	gnl\|CDD\|223893
NZ_CP046793.1\|WP_158138509.1\|297419_297887_+\|DUF1456-family-protein	unknown	unknown	gnl\|CDD\|227144
NZ_CP046793.1\|WP_158143828.1\|285720_287328_-\|GHKL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225827
NZ_CP046793.1\|WP_158143830.1\|288644_291581_+\|CRISPR-associated-endonuclease-Cas3''	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|187804
NZ_CP046793.1\|WP_158143827.1\|282110_283394_+\|citrate:sodium-symporter	unknown	unknown	gnl\|CDD\|377030
NZ_CP046793.1\|WP_158143839.1\|301279_301933_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046793.1\|WP_004395186.1\|306667_308002_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP046793.1\|WP_158143835.1\|297072_297321_+\|TIGR03643-family-protein	unknown	unknown	gnl\|CDD\|378528
NZ_CP046793.1\|WP_158143832.1\|292540_293551_+\|hypothetical-protein	cas5	cls000078_cas5_CAS-I-F	unknown
NZ_CP046793.1\|WP_004395169.1\|283630_284956_+\|anaerobic-C4-dicarboxylate-transporter	unknown	unknown	gnl\|CDD\|237115
NZ_CP046793.1\|WP_158143833.1\|293559_294111_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_CP046793.1\|WP_158143838.1\|300114_301287_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046793.1\|WP_158143834.1\|295220_296981_+\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|225882
NZ_CP046793.1\|WP_158143829.1\|287658_288648_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP046793.1\|WP_158143826.1\|280960_281788_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP046793.1\|WP_158143831.1\|291584_292532_+\|hypothetical-protein	cas7f	cls000079_cas7f_CAS-I-F	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP046793.1\|WP_158143841.1\|305032_306388_+\|DASH-family-cryptochrome	gnl\|CDD\|274288	TIGR02765, deoxyribodipyrimidine_photolyase, cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes. [Cellular processes, Adaptations to atypical conditions].	2.34578e-165
NZ_CP046793.1\|WP_158139046.1\|285047_285710_-\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	6.20456e-64
NZ_CP046793.1\|WP_158143836.1\|297946_299236_-\|hypothetical-protein	gnl\|CDD\|236724	PRK10604, PRK10604, sensor protein RstB; Provisional.	1.37868e-67
NZ_CP046793.1\|WP_158143840.1\|302104_304906_+\|TolB	gnl\|CDD\|223893	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion].	6.00713e-05
NZ_CP046793.1\|WP_004395186.1\|306667_308002_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NZ_CP046793.1\|WP_158143835.1\|297072_297321_+\|TIGR03643-family-protein	gnl\|CDD\|378528	pfam10985, DUF2805, Protein of unknown function (DUF2805). This is a bacterial family of proteins with unknown function.	4.14187e-40
NZ_CP046793.1\|WP_158143830.1\|288644_291581_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	1.14816e-37
NZ_CP046793.1\|WP_158143827.1\|282110_283394_+\|citrate:sodium-symporter	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	1.03258e-163
NZ_CP046793.1\|WP_158143829.1\|287658_288648_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	1.96256e-172
NZ_CP046793.1\|WP_158143828.1\|285720_287328_-\|GHKL-domain-containing-protein	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	2.30347e-117
NZ_CP046793.1\|WP_158143837.1\|299245_299944_-\|response-regulator	gnl\|CDD\|236738	PRK10701, PRK10701, DNA-binding transcriptional regulator RstA; Provisional.	6.6946e-86
NZ_CP046793.1\|WP_004395169.1\|283630_284956_+\|anaerobic-C4-dicarboxylate-transporter	gnl\|CDD\|237115	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed.	0
NZ_CP046793.1\|WP_158143833.1\|293559_294111_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	7.1506e-77
NZ_CP046793.1\|WP_158143834.1\|295220_296981_+\|glycosyl-hydrolase	gnl\|CDD\|225882	COG3345, GalA, Alpha-galactosidase [Carbohydrate transport and metabolism].	2.74068e-99
NZ_CP046793.1\|WP_158138509.1\|297419_297887_+\|DUF1456-family-protein	gnl\|CDD\|227144	COG4807, COG4807, Uncharacterized protein conserved in bacteria [Function unknown].	6.23726e-43
NZ_CP046793.1\|WP_158143826.1\|280960_281788_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	7.48938e-83

>NZ_CP046793.1|WP_158143833.1|293559_294111_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDSYIDIRLKPDAEMLEAELSSKVFTKFHKALVMLNSDQIGISFPEVNVKLGRLFRLHGEASFLHDLQGLNWLGPLSGYCQVSEILAIPEQVQYRVISVKRSNLSQAKLRRLIARGSIDKEGEKRYKVKMLSQGFDNPYLDLFSSSTKQVHRKFFEFGEMQPLPVSGKFDSYGLSQTTTVPWF
>NZ_CP046793.1|WP_158143832.1|292540_293551_+|hypothetical-protein
MKIIIEYDSCWRNSFLGGSNNDPVPKKGREFLGSMTNLKKEGNFKVCETTLDTVMGILNRLIGDQRKLYQARSNIHETSYYFSELEDKVSFTDKPQFTNEMTFIRNMNGSTDQNSFTGMIKVSDPVFKSEYSQQFWGVLNLDFNQLCDFIIKQPQVEVSIDLDPLSIINRLESLNKEKAIELNDNLALVIDILNKNFPEIEYLNNKNLITPISLYCSALYLQLARLEVNYDMATAKTKSGGISGISKRGFTKKDFMDRYTTGSKKTIWGNPFIKKEKIKGQGEVTSMMTKASGQLEINIDVDRNKAQEIKTLIENAGVSSFYLGKKGLAYVSNIRL
>NZ_CP046793.1|WP_158143831.1|291584_292532_+|hypothetical-protein
MEKVTGIKSVDFKITALGHGVVNWNGPTTLTGDNGKTVDNHTLPKLRGYTNLTGKVKEETGYKYKKEATDIDFKKTPLYISQNCIRHHLFRDQAFDLHFAAEKNLEMVLASITGLIRGYVVPSSQCKRTSPLLLEDFIDQLGNGNFEQFGQAGARDSSSFFSKTTFGDTEYVSYGSISIEQLQFISLDKKFDRASMIIKEGQGEEVAKTVQDFIQSLNPSLNPVAIFHSNYVRKGTIFEEGECGILLNDDAVKILVTETLDRLANLSIRQAKGYMYVDEITVDYNDSHKMMRIKRDESEIINEQHIPFAQYFYAK
>NZ_CP046793.1|WP_158143830.1|288644_291581_+|CRISPR-associated-endonuclease-Cas3''
MMVTFVSQCEKNALKKTRRVLDAFANRIGDNTWQTLITEEGLLTVKKMLGQTATRSTAVSCHWIRSRSRSQLLWVVGNKKKFNVEGVVPVNQTGKEVFMDVLTDKPKQGVLYANTQLQPLSEHLFAVGYVAERLHCQLFPDNTQFSIVNFIAGCLHDLGKIDPKFQEWVTNPKKKEYIADDGQHIDDAKFSFDKHPRHNEISLLLYQLLDSAELKCLNPSNKRSVKHAVYWHHAKPFRKEKNGFDSYKDICKKLVVNQKEVKLVDIVVQAQALIKQIVAIDKKYRESTNSVLERSILADELQELEENLPDAPPLPSYKEYELEESVSANTFNVKVNALNNVARACLITADRIISALSATELHAVIFERNLNELVAGLLEVESSLSSDIATCLRTFYPDSERSKKQSEIAQQLANADDISVLAGAAGCGKTKIALEWAKLKGAKRIIWVCPRVQVCQGLFYELTSEQYLPNSTIEINTGEFKFHNQWDNPITDDESFSGDIVITTIDQILGSVISHTKANTLIDFLNVHVVFDEFHEYVNMPAFNLLFAELIAAKKMQQQQAKTLLVSATPHYVFVEELLGIHPDDIKVMPSFNHSQYQLDFKVFNDSELGADNPLFTEQKDGTFVISNMALTAQNSFIRNQHRENAVLLHSKFIKSDKRKWFGEVYEAFKRGGTRKFEVLRSGPIVQASLNISCDYMVAEITSAEDSLQRLGRLDRFGENKVVNTYTLAVPESIANSKGKSPAAGFLSKMYVLSSVRAWYQFLRSELDDKTFTLPEAYQLYFTFHHTERNRGFIESDLVAALKNSVQQINAKVVDPITMPPKKNKDKKRSKISKGSLRGDNRFVQMALVDLSNSEPNFLDQYAYSIPLDDDSNIDNLTYATSAICGYGQSDKDLLSHMFKKHHNIMGGFNKSFTDKILLNQARDPESPIYLSYTSNDLLQVGGESARHSHAIYYAVCDKQAIGAISIKQINQTTENEE
>NZ_CP046793.1|WP_158143829.1|287658_288648_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDLSPSDLKTILHSKRANMYYLEYCRVMQKDGRVLYLTEADKENLYFNIPIANTTVLMLGNGTSITQAAMRMLSQAGVLVGFCGGGGTPLHMACEVEWFTPQSEYRPTEYLQGWLSFWFDDQKRLAAAKQFQNARIDYLQRVWRSDRELTLEKFNVQDEVIQQSLETFHQRTDAASKQSDLLLTEAQLTKALYKYAANNTGKDGFTRQHQPDKKSTDKANDFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDAIVLPWAFVCAKENATEQEFRQQILQAFIEHKALDFMFDTVKQVALQGKEEEESEDHAL
>NZ_CP046793.1|WP_158143828.1|285720_287328_-|GHKL-domain-containing-protein
MKLKSYLTLTTIATTSSIVIVVTGAIFFLLQNSYTEGLKARGLELARVIANDPAVIEAVNAQNTSPTRSSIADYMEHIRAQTDASYIVVVDKKAMRLSHPEPTRVGQRFIGEDIYPALIQGAEYSSIHSGTLGKAIRNFSPIYWQDEVIGAVSIGYLSEKTSDILLAQYGHLGGLIAVVYLLGIGISSAFVFKMKRTFLDYEPEFIIHKFREHEMVLDSIRDAIIAVDNNMNITTINNSAMQKLSMGVCNRYDYLNQPLSRYSTPLSHLVLAKPSQLHQGEFSIGQLNYKVDIYPIASPKGVKGQVIVFFPNLEQNELEREVVYLKNYAQLLRSKTHEYSNKLNVLSGLLQSQKHHEAIEFIQQETDRYQSIIHNIVFSVNDSVIAGLLLAKFNKASEIGVKFIIDEDTHLSSYPKNLSEKFVTILGNLIDNALLAAWQNRASCCPLVHIYLSDRSHHIIFEVQDSGAGVSEQITEHILEFGVSTKLDHEQSGVGLYLVKQWVDNFNGSIDWERTDENTTLFSIYLDKNKVINYE
>NZ_CP046793.1|WP_158139046.1|285047_285710_-|response-regulator
MLLEDDPRASYMLESAINQHPDFIVVAASESCADALLQYTTFKPQLIFVDISLPDGNGIEVIRQLRDQQAACDFIMTTAERETATVQKAIQLGVTDYLVKPLRMSRIHQALDDYKHYTAKLARTATVDQGDIDDILGKSVTKPLRQTPKGIDATTLASLKALLQQPHLAEFSADDIGEQMNVSRITARRYLEFLESEGMVRLALNYKTGGRPRRLYHLVN
>NZ_CP046793.1|WP_004395169.1|283630_284956_+|anaerobic-C4-dicarboxylate-transporter
MFYLHMLLLFAVIFTGIRYGGIAFGLLGGLGVSVLAFVFGVAPGTPPIGVMLIILAVVSASATLEATGGLKLLVKYAEKMLRKHPNHIVYLGPLCTYSLTVLVGTGHSVYPLLPVIYDVAYKKGIRPERPMAIASVASQMGITASPIAAAAAVFMATAADNNLDIGLHNVLMVTIPATLIGLLVACTWSLNRGKDLDKDPEFQARCQDEEFRNGLIDPEAEVVEGSSEDKKAKTGLLVFMLGIASVIFVAMFGKELGLLPNGVNMSVAIQFLMLSVGAIILLTTNIQPSKIVNSHVFIAGMTAVIIIFGIAWLSDTIISYHKTFLIDMVRDVVNHHPWTFAIAMFAVSIFLKSQAAVLTIMLPLGFSLGIPPEVIIGVLPACYAYFFFPFYPSDLAAISFDRSGTTRIGKYVLNHSFLIPGFIGVSTATVVGYFLSMALNG
>NZ_CP046793.1|WP_158143827.1|282110_283394_+|citrate:sodium-symporter
MLANNVNSQKDKRMINIIFALSAAVILFSTLSNNLPTGIIGAIGVMVVVGYILNLIGDKTPIINQFFGGGAIVVIFGSSYLFHSGIMPHETTETVTTFVKGGGFLSFFIASLVTGSILGMDTQVLKKAALKYIPVILGGVACAFLFAGLVGSLLGEGFFASVMLIALPIMGGGMGAGAVPLVEIMSGNTGMSAEMLLSKMVPALAIGNAMAIVIAGLLDKLGKVYPSLTGNGQLIRGNAEQPDASENESPISINVLGIGALLAITMYFVGTMLSDVISMHPYALMILFVALVKVMGLIPRELEKAAHGWYKFVVDNLTPALLVGIGVAYTDLNQILASLTLVYFLMVLATVLGAVVGAALMGRLIGFNPIEAAITAGLCMANMGGTGDVAVLAASKRMELMPFAQISSRIGGALMLIMATFIIELLK
>NZ_CP046793.1|WP_158143826.1|280960_281788_-|ATP-binding-cassette-domain-containing-protein
MKNKKKVLDVRNLSLHIDGTQLLDNVSFQLYEGERVALLGASGSGKSLTARAISGTLPPYCDIEGEIDFDGDSIAQQPILARRSKSRVATIFQDSFSALNPLMSVGKQMLLSTHLRSQHELQTLMNKMQLSNGDDLLSRLPCELSGGQRQRLCIAFALLSGSSLLVADEPTTALDVINQKQVITLLQQCCGERCHHDQQLHSYRLSLLFITHDINVAAQLCQRAIVMENGRIVETGSMNGLLTSPAHPYTQQLVKAASNHNLNELIIPTRVASAC
>NZ_CP046793.1|WP_158143834.1|295220_296981_+|glycosyl-hydrolase
MSSLTLPCQREIDLSSELNVVLQDNELHFSYLGRDSVPISDRYVLFRMALKSDRHARVIGDGFQMLAQTAGTVSHPLDVGRCPDNDQSYRLYASHANKRYYNYLVIEDKDQYQLVGFTSCQRFAGYFELVVEEETTYLIAAIDGEQTLPSDWPNHRLESLIVLQDSSLAEIYQQYAHAIQRHHRSRDGVTQPAPIGWCSWYAYYAEVNEQHIRANLAAMQGELAEVEWVLLDDGYQAFMGDWLTPSEKFSGGVKALLQSIKAAGKKPAIWLAPFIAQPESALFQQHPDWFVKNHQGQPLKAEDVTYGGWRCTPWYVLDGSHPQAQAYLTHVIKTMREEWGVELFKLDANYWGTLKGLRYQSGVTGVEAYRMGMQAIAQGAGEAWLLGCNAPMWPSLGLVDAMRVSDDVERRRQRFAQIAKETFYRSWQHRQLWQIDPDCATLVSLADQATDLASYEFHRNVLLACGGVLLSGDPLTELTSFAKSSLQQLIARQHQTQETSTPTSLALNHWRLALTPNHELHCLFNDQATSQHYTLTATQPVDWYDYWSGEKLVQQPAQVLDVSLAGGLTSRAIVASTERTHSSYRG
>NZ_CP046793.1|WP_158143835.1|297072_297321_+|TIGR03643-family-protein
MFSADEQSRIIEMAWEDRTPFEAIFHQFGLTEPQVIRFMRRHLTTRSFNLWRKRVSGRETKHLKLRPPEVDRGYCPTQYKPR
>NZ_CP046793.1|WP_158138509.1|297419_297887_+|DUF1456-family-protein
MTNNDIFCALRTTFAFNDQTLLEIFHLADNETTPAQLASWLSKPQAPEFAELSDPQLASFLNGLINLKRGKREGEAAKPEANLNNNMVFQKLRIALNLQADDLLTLFQQVGVELSKNEIGAFFRKPGNKHYRECSDATLRQFLQAVEHHTPAVTE
>NZ_CP046793.1|WP_158143836.1|297946_299236_-|hypothetical-protein
MKRLYLELYLALVGIFMFTLVSYVSINDWLSPDLDLVARSQQIQSSLELLEFVADQHGVDVAKEKLKAIADANWLIIDALPENSPLLTPQVRERLANHGVFTTDDDGSIFTFNPTDTIYHIYRDPEAEIWIASEIEDWVFVLVLMGCFAVYSMVMMKLFMWRFKHLEQVTQALAKGDLSIRAKETGSMRLGTLNRSFNAMADKISHLIESHKMLTNAIAHEVRTPLFRIQCQLDMLQDMPEKKDKYIAGIEDDIHELEEMINELLSLGKMETTPLTFISLDLAQWLPTQIEKWQIESPVTIELQAPQQWPTPLVDSNLLNRAISNVVRNASRYAKQQVKISVSCDDIDWTVTIEDDGPGIPETHWPHIFKPFYRVGSARDKASGGFGLGLAIAEQIARQHHGHLIVTSSSSLGGACFKFTLPLDISEER
>NZ_CP046793.1|WP_158143837.1|299245_299944_-|response-regulator
MKIVLIEDDVKLAELLTSYLENNEFEVHLAHDGLQASALILQVQPDLVILDLMLPGLDGLSICREIRNDYKGKIVFLTASDDDIDHVAALELGADDFVNKPIKPRVLLARIRMLLRRQQQTELAHPDNDHQLHFGQLSINHKLRQCSLAGEDIVLTDSEFDLLWLLASHAEQVLSREYLVKETRGIEYDGLDRTIDNKVAILRRKLGDSSSVPKRILTLRGKGYLFVPESWS
>NZ_CP046793.1|WP_158143838.1|300114_301287_+|hypothetical-protein
MNSIQPNENRTRLVGLDFLRGLVIFMAIFEHYTGYLNYWYVDFFPKESDFYETLYRSHLPMLGQLVPMDSFTGQVSAWLIPWVSQVYLALAAFNLSARSSEHMRATLVKKLALFLSIIFVLYIEGFIIAPNFGEAISFYPVMLWMTLLAFFSIVYAFFGIRGMLVLTVLSTIVSQLGVTSLLEHAELWMQTHVHPGYELDARLDLFMASGCFGFLYGWVWHHYAEKRDALNKLVLGIALVALSLYFLNGQAATIDLHDVYAEEHALAEDTIGRLGIWGTEFLVIGLILTLHQAGIRLSWRPLNWIGMYSLTVFIFHKSIFIFLWGPLLTWASAKMGTTLPNNFLLIFTLCSLSVGIIYLFKRSGIICHLMGDHQDQMWKDVYRKKRLSDA
>NZ_CP046793.1|WP_158143839.1|301279_301933_+|hypothetical-protein
MLNPTMILAYQAIIVLTLTLWVGVVRCDEFSLGASFGIDSPAVSSSTKWEWSPSIAYEKETEFGLFFAQGGEAGVALPMPYWDKAYFTVGPVLLSEEQGSSRIGSSLRIGYLFTESLSASLAWQKDWSNAVGSQWLIDGSYRLNDEWSINGWSRYADKHNQALRHVSGTWRDVGISVEWETPLLSDWVSSVEVGVNHQVDRNFTEPVLTWSVRYLFW
>NZ_CP046793.1|WP_158143840.1|302104_304906_+|TolB
MSKTLALSPIMGLMACLGLHSPHVLAEPVAWDQAGQVWQTQQSAHFVVHFRSELASSAARALDIAEQVHQELASQFAQMPSEKTHLTVVDDYDDSNGWATPLPYAQIRLIINPPSDVNGLEGNDEWLHLLIRHEYTHIIHMEMNDGAVTIGRGIVGRHPFLFPHAFTPSMLLEGLAVYMESQNDHGVGRLHNSHFAMQMRMEVASGELADIEQVVVANKRLPFGSNYLYGAYFVQYLAKTYGEESVQAFLTDYSGYLVPGLFLNLSARHIFGKDFFALWEEFRADLNTQFADQLTSNEAFTYHEFDAQPFEYLLAHDNDTLLAWRRNGDDRANLAQWDAKHGQWQSLVSTKSLTSIDSHPTQGLVVSQINSYVDGRVFNDLYRYVDGQWQRLTEQQRFVQARWSNDGQSIFAVRHQQGLAELWQIELNGKQTQLWQGEANWVLGDMAVSPNGDIYATVKAPFQSWNIMRFDQPTQSWMAVTETAATEHQLSFTAQGDLLFSADYTGRYQIYRLDLQTNIVEQLTAEIGGAFSPQSGPEGIVYQAYEHDGYHLRRVENPQGLADIPLSTLPVANTVNAAPIATITATEKSQPTGYSPLSTLAPRYWVPVWQSDDNQSLFGVATSGSDVLGRHQYEIMAAWDSKNAFAAYQLGYQYDNRWQATLSREHEFKFNALTGKDDRIVRQDDFTLQRNHLWHAFDDHLNVGVGTYWQKEALVKSPQGSHYADASNEWLAGGAIQWDNREDLLNIPGHAWGHYADLVWETNIDGDYSGQKWQAQWQANWDLPGRLRLTTHVAAGYADAKAKPFELGGYTGDEAQLYGRNELKLRGYGSAAQVGQQYATQSIELSRLLYRAERNWGLWPIGLGDISATAFVDSGSSWNSQQSYSALTGIGAELQIDAIVLYGNALPIHIGYAHGLDSKLGKDEVYIKLAAEF
>NZ_CP046793.1|WP_158143841.1|305032_306388_+|DASH-family-cryptochrome
MSIRSLYWFTNDLRISDNPLLAQAAQNSHQLTCCYLIPSLTPLDQRFQVVASNGLAKQRFLLESLADLDAKLQTLGQSLQIATGEAVSQLCQFIELTEANHLYVSESVDFAIHQTLREVRLRYPQLTVVSLNTHRLFEQAELPFSLAALPDSFSVFRKQVESLDGRYSSQSARWNNAITALPPSVLPSSSSWLSTAIRSINLELRSSPLWRGGESAALEHLEDYFSSDAPLIYKQTRNALDEWESSTKFSSWLANGCLSIGRLLARLNDYETQRGANESTYWIYFELLWREYFQWYALKYGAQLFQFSGIKGQVPLTSYYPQRMRSWINGTTPYPIVNAAMKQLKATGYLSNRSRQLVASCLVHELSIDWRYGAQYFQSQLIDYDVASNWGNWQYLAGVGADPRGHRRFDLAKQTALYDPELSFIRHWQGEADQHSIDVVDMVDWPVSSAQ
>NZ_CP046793.1|WP_004395186.1|306667_308002_+|cytochrome-ubiquinol-oxidase-subunit-I
MLDTLMLSRIQFAANISFHILFPTITIALAWIMVFFKWRFVRTQAQLWLDLYYFWVKVFALTFALGVVSGITMSFQFGTNWPGFMEKVGNVAGPLLGYEVMTAFFMEATFLGVMLFGRGRVPEWVHTLATVLVAIGTSLSAFWILVLNSWMHTPTGYELIDGIVHVTSWKEVIFNPSMPYRLAHMLLASLLTASFVIAGISAYQYLRNSQLNAAKVGMKVAIILAAVGIPVQILVGDLHGLNTLEHQPAKIAAMEGVWETEQGAPLLLFAWPDETTRSNHFEVGIPKLASFILTHDLNGEIQGLNEFAPDHPPVKPLFFGFRIMVGVGMLMLLVSWYGAWRLLRQQSLPKPYLYTLVAMTFSGWVATLAGWYVTEIGRQPWLVQGVLRTSDAVTTVASSSVATSLVMYLIVYAVLLVAYIHTLFYLARQFSSPTETATTNEQKV

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Crispr_ID: NZ_CP046793_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046793_2

1373796-1374010

Orphan

Consensus_repeat	Method
TGTGCCTCCTTAGCTCAGTAGGTAGAGCAACGGACTGATAATCCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP046793_2

>merge|NZ_CP046793|2|1373796-1374010|PILER-CR
TGCGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATTTATTGCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTGTCGGTGGTTCGATTCCGCCTCGAGGCACCATATTAAAGCTGTTCCTCCTTAGCTCAGTTGGTAGAGCGACGGACTGTTAATCCG

>NZ_CP046793|2|2|1373796-1374010|PILER-CR
TGCGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAG	TAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATTT
ATTGCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCT	CGTGTCGGTGGTTCGATTCCGCCTCGAGGCACCATATTAAAGC
TGTTCCTCCTTAGCTCAGTTGGTAGAGCGACGGACTGTTAATCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046793.1\|WP_004396075.1\|1383143_1383644_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932
NZ_CP046793.1\|WP_158144308.1\|1375114_1375969_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP046793.1\|WP_154169256.1\|1383672_1384161_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182143
NZ_CP046793.1\|WP_158144305.1\|1368940_1369861_-\|glutaminase-B	unknown	unknown	gnl\|CDD\|234880
NZ_CP046793.1\|WP_158144310.1\|1379983_1380991_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP046793.1\|WP_158144304.1\|1367714_1368884_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NZ_CP046793.1\|WP_154169254.1\|1380987_1381803_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP046793.1\|WP_004396067.1\|1372428_1373559_+\|membrane-bound-lytic-murein-transglycosylase-MltC	unknown	unknown	gnl\|CDD\|183271
NZ_CP046793.1\|WP_158144307.1\|1370981_1372037_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NZ_CP046793.1\|WP_004396077.1\|1384148_1384910_-\|threonine/serine-exporter-family-protein	unknown	unknown	gnl\|CDD\|377697
NZ_CP046793.1\|WP_004396066.1\|1372057_1372333_+\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NZ_CP046793.1\|WP_004396060.1\|1366729_1367023_+\|YggU-family-protein	unknown	unknown	gnl\|CDD\|179931
NZ_CP046793.1\|WP_040904707.1\|1366172_1366730_+\|YggT-family-protein	unknown	unknown	gnl\|CDD\|376765
NZ_CP046793.1\|WP_158144311.1\|1381870_1382251_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP046793.1\|WP_158144306.1\|1370052_1370772_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP046793.1\|WP_158144309.1\|1376115_1378473_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP046793.1\|WP_158144302.1\|1365301_1366120_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_CP046793.1\|WP_154169252.1\|1378698_1379994_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP046793.1\|WP_158144303.1\|1367115_1367721_+\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|234648
NZ_CP046793.1\|WP_004396074.1\|1382261_1383077_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|234673

Protein	Function_ID	Function_description	E-value
NZ_CP046793.1\|WP_004396075.1\|1383143_1383644_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	1.70757e-85
NZ_CP046793.1\|WP_158144308.1\|1375114_1375969_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	1.03458e-149
NZ_CP046793.1\|WP_154169256.1\|1383672_1384161_-\|hypothetical-protein	gnl\|CDD\|182143	PRK09917, PRK09917, threonine/serine exporter.	2.09912e-64
NZ_CP046793.1\|WP_158144305.1\|1368940_1369861_-\|glutaminase-B	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
NZ_CP046793.1\|WP_158144310.1\|1379983_1380991_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP046793.1\|WP_158144304.1\|1367714_1368884_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NZ_CP046793.1\|WP_154169254.1\|1380987_1381803_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	2.60282e-144
NZ_CP046793.1\|WP_004396067.1\|1372428_1373559_+\|membrane-bound-lytic-murein-transglycosylase-MltC	gnl\|CDD\|183271	PRK11671, mltC, membrane-bound lytic murein transglycosylase MltC.	6.30183e-151
NZ_CP046793.1\|WP_158144307.1\|1370981_1372037_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	0
NZ_CP046793.1\|WP_004396077.1\|1384148_1384910_-\|threonine/serine-exporter-family-protein	gnl\|CDD\|377697	pfam06738, ThrE, Putative threonine/serine exporter. ThrE is a family of bacterial and Archaeal proteins that catalyze the export of L-threonine from the cell. UniProtKB:Q79VD1 has been characterized as being necessary for this export. The domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent efflux of threonine and serine.	1.38995e-71
NZ_CP046793.1\|WP_004396066.1\|1372057_1372333_+\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	8.23318e-59
NZ_CP046793.1\|WP_004396060.1\|1366729_1367023_+\|YggU-family-protein	gnl\|CDD\|179931	PRK05090, PRK05090, hypothetical protein; Validated.	1.7152e-53
NZ_CP046793.1\|WP_040904707.1\|1366172_1366730_+\|YggT-family-protein	gnl\|CDD\|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	5.52385e-11
NZ_CP046793.1\|WP_158144311.1\|1381870_1382251_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	6.11318e-72
NZ_CP046793.1\|WP_158144306.1\|1370052_1370772_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.21605e-108
NZ_CP046793.1\|WP_158144309.1\|1376115_1378473_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP046793.1\|WP_158144302.1\|1365301_1366120_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	3.50135e-115
NZ_CP046793.1\|WP_154169252.1\|1378698_1379994_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	5.27517e-156
NZ_CP046793.1\|WP_158144303.1\|1367115_1367721_+\|XTP/dITP-diphosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	1.96184e-122
NZ_CP046793.1\|WP_004396074.1\|1382261_1383077_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|234673	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase.	8.1855e-171

>NZ_CP046793.1|WP_004396067.1|1372428_1373559_+|membrane-bound-lytic-murein-transglycosylase-MltC
MKKSLYCLTTLLLLVGCSREFVERFYAVDYEPTNRFAKNLAQLPGQFEKDTAALDSLILSFSGNIERRWGSREIKIAGKSNYVKYIDNYLSRTEVNFSDGKILVETISPTDPQGHLKRAIITTLLTPDDPASVDLFSSQNIELKGQPFLYQQVVDQDKQPIQWRWRANRYADYLIAHHLKVKQVDFKKAYYVEIPMVADQMQIRSYQYADIVRRASRKYGIPEDLIYAIIKTESSFNPYAVSWANAYGLMQVVPKTAGRDVFNLVKNKPGEPTPEYLFNPENNIDTGTAYFYLLKNRYLKDVRHPLSLEYSMISAYNGGAGGVLRTFHQDRQRAMNNLNSLQPNQVYWALTNRHPNAEARRYLEKVTQFKREFNAK
>NZ_CP046793.1|WP_004396066.1|1372057_1372333_+|oxidative-damage-protection-protein
MSRTVFCARLQKEADGLDFQLYPGELGKRIFDHICKQAWAEWQTKQTMLINEKKLNMMDPEHRKFLENEMVNFLFEGKEVHIEGYTPPSQA
>NZ_CP046793.1|WP_158144307.1|1370981_1372037_+|A/G-specific-adenine-glycosylase
MTPFASAILTWYDAYGRKHLPWQQNKTAYTVWLSEIMLQQTQVTTVIPYYQRFVERFPSVADLAAAQQDEVLHYWTGLGYYARARNLHKTAKIIVEQYQGQFPTELEAMNALPGVGRSTAAAVLSSVFKKPHAILDGNVKRTLARCFAVEGWPGKKIVENQLWLHAEQQTPSVDVDKYNQAMMDMGAMICTRSKPKCTLCPVESLCIAKQQGNPLDYPGKKPKSDKPVKQTWFVILYHQGQVWLEQRPQVGIWGGLYCFPQHTDQQIETTLAHRAVQDNHIQSQRPLIAFRHTFSHYHLDITPILLELTHKPDIIMEGTKGLWYNLQQPEEIGLAAPVKQLLHSLPFEIHP
>NZ_CP046793.1|WP_158144306.1|1370052_1370772_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSEVTTNQLTEDGKVLRRIRSFVRREGRLTKGQEAAMKACWPTMGIDYQTELLDWAQVFGNQNPVVLEIGFGMGASLVEMAKNAPHKNFIGIEVHSPGVGACLASARDAGVTNLRVMCHDAVEVFANMIPDNSLATLQLFFPDPWHKKRHHKRRIVQLEFAEMVRQKLIVGEGVFHMATDWENYAEHMIEVMNQAPGYRNLAQEGDYIPRPEERPLTKFEQRGHRLGHGVWDIKFQRVS
>NZ_CP046793.1|WP_158144305.1|1368940_1369861_-|glutaminase-B
MKPSSAILATILDEVRPLIGQGKVANYIPALAQVVSDKLGIAVYTNQGEIFAAGDAQEGFSIQSISKALSLTLAMGLYQPEELWQRVGKEPSGQAFNSLIQLEMEQGIPRNPFINAGAIVIADMLYSRLSAPRQRLLEFVRQLSGEEAIIYDKVVAASEMMHSDRNASIAYLMRSFGNFENEVIPVLNNYFHACALKMSCVELAKTFSYLANKGVSVHTGQRVVSVTQSKQINALLATCGLYDGAGEFAYRVGMPGKSGVGGGIIAIVPGEMTIAVWSPELDPSGNSLAGTKALELLSERIGRSIF
>NZ_CP046793.1|WP_158144304.1|1367714_1368884_+|radical-SAM-family-heme-chaperone-HemW
MLTPPKLSLYAHIPWCVQKCPYCDFNSHALKEEIPETQYIAALLEDLDRDIERYQLANDPRRLHSIFIGGGTPSLISPQGIQYLIDGIAARIPFQPEIEITMEANPGTIEAERFAAYRLAGVTRISIGVQSFATEKLAHLGRIHGQQEAVRAAKLAHTIGLKSFNLDLMHGLPDQSLAQALDDLDQAIALNPPHLSWYQLTIEPNTLFYSKPPTLPDDDALWDIFELGHQKLTEAGYVQYEISGYSKPGYQCQHNLNYWRFGDYLGIGCGAHGKLSFADGRIIRTTKVKHPRGYLAAYQNMVKPYLSDEQLVAESDRPFEFFMNRFRLLEACPKQDFTTTTGLALSVIEPTIQWACEMNYLTQDATSWQITEHGKLFLNDLLAAFMAEE
>NZ_CP046793.1|WP_158144303.1|1367115_1367721_+|XTP/dITP-diphosphatase
MNKIVLATGNRGKVAEMADLLADFGFEVIAQSELNVPDADETGLTFIENAIIKARHAAALTGLPAIADDSGLEVDYLDGAPGIYSARYAGANASDNDNLQKLLTSLEGVPSEQRTARFHCVLVYLRHANDPTPLVCHGQWQGEILTEPRGEHGFGYDPVFFVPEENCASAQLPAARKKQLSHRAKALQLLFQALKEQRASC
>NZ_CP046793.1|WP_004396060.1|1366729_1367023_+|YggU-family-protein
MSIAWLDGQDLCLRIYVQPKASRDSLVGQHGDELKIAITAPPVDGKANAHLSRYLAKLCKVSKSAVEIEKGQLGRHKQVRILSPTVIPAEIQALFPT
>NZ_CP046793.1|WP_040904707.1|1366172_1366730_+|YggT-family-protein
MNAMSFLISTLFDIYIMVVILRVWLQAARADFYNPFSQFIVKTTQPVVAPLRRMIPSVGNLDLATILFAYVLSVLKFVVLILMVSKGAMVFSLDFLWFGLLSLVKAAGGLLFWILLIRAILSWVSQGRSPIEFVFHQLTEPMLSPIRRIIPAMGGFDLSILVLFIILQFANFLMGDFIGPIWYQL
>NZ_CP046793.1|WP_158144302.1|1365301_1366120_+|pyrroline-5-carboxylate-reductase
MEQRTIAFIGAGNMAHAIIAGLIASGYPAQRIIASAPSQANLASLHTQYAIKTTSDNLAAAQQADVVVLAVKPQLMAEVCQPMQAIDWSNKLVISIAAGISVARLQQLLNTQPALVRVMPNTPSLVNQGMAGLFAAPEASESDKNFTEQLMSSVGKTCWVSEESAINSVIAAAGSAPAYFFLFMEAMQAEAIAQGFDKQTARLLVEQSALGAAQMVAANPQLELAILREQVTSKGGTTAQAIATFEQHQLSDIVAKAMRAAVHRAQEMEKLF
>NZ_CP046793.1|WP_158144308.1|1375114_1375969_-|co-chaperone-DjlA
MHIFGKILGAFFGLLFGGPLGAIFGLFLGHQFDKARYRSQNPFANGQFSSGPTQTERQEEFFKSAFAVMGHVAKAKGQVTQQEIQLASIMMDRMNLHGDQRRAAQDAFREGKEADFPLQQTLENVRFFTGGRFDLMQFFLELQVSAAFADGDLHPSERQVLHKIAQGLGFSSDQLERRLRMQEAAFRFQQSGGFTGQQGGSSGSSQWQQPSSRDRLADAFSVLGVNQDADVQTIKRAYRKLMNEHHPDKLMAKGLPPEMMNMAKEKSQEIQHAYDLIKKEQGFK
>NZ_CP046793.1|WP_158144309.1|1376115_1378473_+|LPS-assembly-protein-LptD
MSRFSRTFLAASISAALFAPQTQAEATVDNSVQELPTLDQCLVNEPESENPNPQPIKVKADKLEAISGQRATYSGDVVVLQGQKQIRANNVTLHQQENIVVAEGNVTFSDGQVKATSDRVTNQLNIDQITLENTQYQFLCQPGRGHAAYIAKTGKAIYEIEDGSITSCPEGDSAWRLRASSIDVDQDAEQATFYNPRLEIQNVPVFYLPYLTVPIGDTRKTGFLYPDISYGSRDGFEISVPFYWNLAPNYDLETTLRYMDNRGTQLNTVFRYLTEFGSGSLKGEFLPDDELHPEQGKRWGFQYRHDGIYQQAWKLDLDYSRVSDVEYFSDLSSGIGNREDGQLMQQARVTYRSSTWDTSLLARDFQVLTDKDNLPYRLMPQVAFNYYAPELLRYLDLDIKSHISRFETDAIGKPSATRAHIEPGISIPLGNTWGTWTTEARLLATYYQQDLSGVISSDYQELEESVSRVIPEFRTHAGIVLERDTTLFNGYTQTLEPQVQYLYVPKENQQNIARYDTTLLQTDYYGLFRSRKYSGVDFISAANQVSYGASTRFFDDQYKERLNIAFGQIFYIDKGLKSSNTDSSQVEDTQSNYSAWAVEMDFNYDDFLFYHGGIQYDIDTSAMQLANSTLEYRFNGGYLQTNYRYVTKEYIEDTVGDSIPVSSITRRGISQAGLLGGYQLSHKWHVTGQYFYDMTTNEALEWLVGIRYTSDCWYMGFSYSNQLKDWNRTPSGNYLGFEDPNYENNFSFNIGIIGFGTKVSSSESMAGIKSSDNSLGYGRPFFLNN
>NZ_CP046793.1|WP_154169252.1|1378698_1379994_+|peptidylprolyl-isomerase-SurA
MKLWTLALYTLTSLVSIATVQAQPVELDRVAVIVNSGVILQSDIDSALLTVRANAKTNQQTLPPENILREQIIEKLIVDTLQQQEADRIGVRIDDNTLNDAITEIAHNNQQTPEQLRLSIAEQGLTYPEFREQIRKEIAASEARNALVRRRINIIPAEVDTLAELLAQETSATVQYKISHIQLRFNDGQDKSEVEAQANKLVAELNQGADFSTMAITYSKGPRALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDIKGLETVAVTEVNARHILIKPTIILSDEGAKNQLNDLVRRINAGEASFAELAQQYSQDPGSAAQNGELGYQTPELYVPEFKHQIETLPVGIISEPFKTVHGWHIVEVLDRREVDRTDAAMKNRAYRILFNRKFNEEASTWLQELRAGAFVEILQDDQDDD
>NZ_CP046793.1|WP_158144310.1|1379983_1380991_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MTIKRIVVTAGEPAGIGPDLVLALSQNDWPHQLVICADKQMLAERAKALGIAVKLLDYQPDQKATPQKAGYLLVDSIAVSEQVIAGQLNSANGHYVLKTLERAALGCMNGEFDAIVTGPVHKGVINRAGVAFSGHTEFFAELSNTPLVVMMLATEGLRVALVTTHIPLATVSAAITAERLESIIRILHHDLVEKFAIAQPTIYVCGLNPHAGEEGVLGHEEIDTITPSLEKLRRQGIDLVGPLPADTIFSEKYLQKADAVLGMYHDQVLPVLKYKGFGRSVNITLGLPFIRTSVDHGTALDLAATGLADVGSFKTALDQAIELVDKKNAITLRTL
>NZ_CP046793.1|WP_154169254.1|1380987_1381803_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MRNDVHLGHKARKRFGQNFLNDPYIIDGIVSAINPLPGQNLVEIGPGLGAITEPVGREVDKFTVIELDRDLAERLRNHPELSSKLTIHEGDAMRFDFQQLVKPNNKLRIFGNLPYNISTPLMFHLFEFHKEIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKVVPVLEVPPSAFVPPPKVDSAVVRLLPYEELPHPATSLKWLDRVVREGFNQRRKTVRNCYKGLLDDETFAQLAIDSTMRPENLTLQQFVSMANWLDAQNTQPA
>NZ_CP046793.1|WP_158144311.1|1381870_1382251_+|Co2+/Mg2+-efflux-protein-ApaG
MDITHPCIKIQVQTKYVPEQSHPEAHRYVFAYLIIIKNLSTETVQLISRSWLVTDANGKQMRIEGEGVVGEQPVIAANDEYTYTSGTALETPVGVMQGHYGMINSLGEPFLAEIDPFRLAVPNVLN
>NZ_CP046793.1|WP_004396074.1|1382261_1383077_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MANYIVGDIQGCLDELQLLLKQVNFHPISDTLWLAGDLVARGPKSLETLRFIRDLGPAAKTVLGNHDLHLLAVSLGIHPAKNKDKTLAIFAAPDADELLDWVRQWPLLLEHPEFVLTHAGISPQWNLQTARKAAHEVETVLRSQRWPWLLTNMYSNTPDLWNDDLQGIERYRYIINAFTRMRFCFFDGRLDMACKLPPAQVSSHELMPWFALPQRIELEKTVIFGHWAALEGYFSPNVIGLDTGCVWGGPLTMLRWEDKQVFKQPALESKS
>NZ_CP046793.1|WP_004396075.1|1383143_1383644_-|type-3-dihydrofolate-reductase
MIISMIAAMANERVIGKDNQMPWHLPADFAWFKRCTIGKPVIMGRKTYQSIGRPLPGRHNIVISRDPELVIDGVDVVSSLDAALLKAGAVPEVMIIGGGSIYTECLPQADKLYITLIDAQFIGDTHFPNWGTNWHECYREHYSADDKNAYSMDFIILERETEKPRT
>NZ_CP046793.1|WP_154169256.1|1383672_1384161_-|hypothetical-protein
MGMVALVSWDLLLGLINDMLFASIPAVGFALIFNVPVPALKYCALGGAIGHGSRYLMLHFGIPIEWASLFAAGIVGMIGVQWSRRFLAHPKVFTVAALIPMVPGVFAYKAMIAMVEIHHLGFKPELFASLMENFLKAMFIIAGLAVGLAIPGLLFYRRKPIV
>NZ_CP046793.1|WP_004396077.1|1384148_1384910_-|threonine/serine-exporter-family-protein
MTSKQRAISRLIAQAGQMLLAHGAESTLVGDIMRRMGLASGMDEVEVSLSASSLVVTTVYHQHCITTARRCADRGINMRVVTQIQRICILMERGLLDYSMAQHKLERITPERYNRWLVVVMIGLSCAAFSRLAGGDGIVFLMTFIASAIGMMVRQEIGHRQFNPLLNFAATAFVTSLISTQAVIYQLGNKPTIVMASSVLMLVPGFPLINSVSDMLKGYINMGIARFVMASLLTLATSLGIIAAMSVTGVWGW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	296499-296535	1	0.973
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	KU052038	Escherichia phage SerU-LTIIb, partial genome	1164-1200	1	0.973
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	KU052038	Escherichia phage SerU-LTIIb, partial genome	3070-3106	1	0.973
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	NZ_CP022660	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence	52078-52114	1	0.973
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	NZ_CP045061	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence	52084-52120	1	0.973
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	NZ_CP045054	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence	52089-52125	1	0.973
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	NZ_CP045058	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence	52088-52124	1	0.973
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	LN997803	Escherichia coli phage phi467	15126-15162	1	0.973
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	NZ_LN868946	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence	103821-103857	2	0.946
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	NZ_CP054057	Scandinavium goeteborgense strain CCUG 66741 plasmid pSg66741_1, complete sequence	85817-85853	2	0.946
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	NZ_CP023526	Cedecea neteri strain FDAARGOS_392 plasmid unnamed, complete sequence	1927-1963	3	0.919
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	NC_021742	Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence	35428-35464	3	0.919
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	MH791411	UNVERIFIED: Escherichia phage Ecwhy_1, complete genome	13645-13681	3	0.919
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	MH494197	Escherichia phage CMSTMSU, complete genome	196772-196808	3	0.919
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	KY653118	Morganella phage IME1369_01, complete genome	698-734	3	0.919
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	LC494302	Escherichia phage SP27 DNA, complete genome	76611-76647	4	0.892
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	LT603033	Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I	17117-17153	4	0.892
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	NC_027364	Escherichia phage PBECO 4, complete genome	207832-207868	4	0.892
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	NC_049942	Escherichia phage JLK-2012, complete sequence	23524-23560	4	0.892
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	MK817115	Escherichia phage vB_EcoM_phAPEC6, complete genome	52945-52981	5	0.865
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	MH383160	Escherichia phage UB, complete genome	272124-272160	5	0.865
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	MK327931	Escherichia phage vB_EcoM_G17, complete genome	77929-77965	5	0.865
NZ_CP046793_2	2.1\|1373841\|37\|NZ_CP046793\|PILER-CR	1373841-1373877	37	KM507819	Escherichia phage 121Q, complete genome	77938-77974	6	0.838
NZ_CP046793_1	1.8\|294690\|32\|NZ_CP046793\|PILER-CR,CRISPRCasFinder,CRT	294690-294721	32	NZ_AP019747	Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413 plasmid pARA7, complete sequence	709-740	7	0.781
NZ_CP046793_1	1.1\|294270\|32\|NZ_CP046793\|PILER-CR,CRISPRCasFinder,CRT	294270-294301	32	NC_017572	Shewanella baltica BA175 plasmid pSBAL17502, complete sequence	34665-34696	8	0.75
NZ_CP046793_1	1.1\|294270\|32\|NZ_CP046793\|PILER-CR,CRISPRCasFinder,CRT	294270-294301	32	NC_009998	Shewanella baltica OS195 plasmid pS19501, complete sequence	8314-8345	8	0.75
NZ_CP046793_1	1.8\|294690\|32\|NZ_CP046793\|PILER-CR,CRISPRCasFinder,CRT	294690-294721	32	NZ_CP022523	Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence	648151-648182	8	0.75
NZ_CP046793_1	1.8\|294690\|32\|NZ_CP046793\|PILER-CR,CRISPRCasFinder,CRT	294690-294721	32	MN180251	UNVERIFIED: Wolbachia phage WO isolate Seq2wOMel_KL2 genomic sequence	46204-46235	8	0.75
NZ_CP046793_1	1.3\|294390\|32\|NZ_CP046793\|PILER-CR,CRISPRCasFinder,CRT	294390-294421	32	MN850643	Escherichia phage tiwna, complete genome	49030-49061	9	0.719
NZ_CP046793_1	1.3\|294390\|32\|NZ_CP046793\|PILER-CR,CRISPRCasFinder,CRT	294390-294421	32	MN850572	Escherichia phage aaroes, complete genome	11494-11525	9	0.719
NZ_CP046793_1	1.3\|294390\|32\|NZ_CP046793\|PILER-CR,CRISPRCasFinder,CRT	294390-294421	32	NC_049823	Escherichia phage herni, complete genome	19632-19663	9	0.719
NZ_CP046793_1	1.3\|294390\|32\|NZ_CP046793\|PILER-CR,CRISPRCasFinder,CRT	294390-294421	32	MK373798	Escherichia phage vB_EcoS_G29-2, complete genome	1849-1880	9	0.719
NZ_CP046793_1	1.3\|294390\|32\|NZ_CP046793\|PILER-CR,CRISPRCasFinder,CRT	294390-294421	32	MN850569	Escherichia phage vojen, complete genome	3070-3101	9	0.719
NZ_CP046793_1	1.3\|294390\|32\|NZ_CP046793\|PILER-CR,CRISPRCasFinder,CRT	294390-294421	32	MN850607	Escherichia phage egaa, complete genome	50698-50729	9	0.719
NZ_CP046793_1	1.3\|294390\|32\|NZ_CP046793\|PILER-CR,CRISPRCasFinder,CRT	294390-294421	32	NC_049825	Escherichia phage grams, complete genome	4406-4437	9	0.719
NZ_CP046793_1	1.3\|294390\|32\|NZ_CP046793\|PILER-CR,CRISPRCasFinder,CRT	294390-294421	32	MT360681	Shigella virus 2019SD1, complete genome	43354-43385	9	0.719
NZ_CP046793_1	1.8\|294690\|32\|NZ_CP046793\|PILER-CR,CRISPRCasFinder,CRT	294690-294721	32	MK460248	Streptomyces phage Teutsch, complete genome	116890-116921	10	0.688
NZ_CP046793_1	1.8\|294690\|32\|NZ_CP046793\|PILER-CR,CRISPRCasFinder,CRT	294690-294721	32	MN369743	Streptomyces phage Tribute, complete genome	117055-117086	10	0.688
NZ_CP046793_1	1.8\|294690\|32\|NZ_CP046793\|PILER-CR,CRISPRCasFinder,CRT	294690-294721	32	MF358542	Streptomyces phage Sushi23, complete genome	117525-117556	10	0.688
NZ_CP046793_1	1.8\|294690\|32\|NZ_CP046793\|PILER-CR,CRISPRCasFinder,CRT	294690-294721	32	MF347639	Streptomyces phage Samisti12, complete genome	117857-117888	10	0.688
NZ_CP046793_1	1.8\|294690\|32\|NZ_CP046793\|PILER-CR,CRISPRCasFinder,CRT	294690-294721	32	NC_042011	Streptomyces phage Peebs, complete genome	116659-116690	10	0.688

1. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.973

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccatat	Protospacer
*********************************** *

2. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to KU052038 (Escherichia phage SerU-LTIIb, partial genome) position: , mismatch: 1, identity: 0.973

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccatat	Protospacer
*********************************** *

3. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to KU052038 (Escherichia phage SerU-LTIIb, partial genome) position: , mismatch: 1, identity: 0.973

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccatat	Protospacer
*********************************** *

4. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 1, identity: 0.973

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccactt	Protospacer
**********************************.**

5. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 1, identity: 0.973

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccactt	Protospacer
**********************************.**

6. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 1, identity: 0.973

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccactt	Protospacer
**********************************.**

7. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 1, identity: 0.973

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccactt	Protospacer
**********************************.**

8. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to LN997803 (Escherichia coli phage phi467) position: , mismatch: 1, identity: 0.973

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccatat	Protospacer
*********************************** *

9. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to NZ_LN868946 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence) position: , mismatch: 2, identity: 0.946

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccatca	Protospacer
***********************************.

10. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to NZ_CP054057 (Scandinavium goeteborgense strain CCUG 66741 plasmid pSg66741_1, complete sequence) position: , mismatch: 2, identity: 0.946

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccaaat	Protospacer
**********************************  *

11. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to NZ_CP023526 (Cedecea neteri strain FDAARGOS_392 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.919

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccagaa	Protospacer
**********************************

12. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to NC_021742 (Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.919

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
taggtcaccagttcgattccggtagccggcaccaatc	Protospacer
*************************.******** *.

13. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to MH791411 (UNVERIFIED: Escherichia phage Ecwhy_1, complete genome) position: , mismatch: 3, identity: 0.919

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
taggtcaccagttcgattccggtagtcggcacaaatc	Protospacer
******************************** * *.

14. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 3, identity: 0.919

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
taggtcaccagttcgattccggtagtcggcacaaatc	Protospacer
******************************** * *.

15. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to KY653118 (Morganella phage IME1369_01, complete genome) position: , mismatch: 3, identity: 0.919

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
taggtcaccagttcgactccggtagccggcaccatat	Protospacer
****************.********.********* *

16. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to LC494302 (Escherichia phage SP27 DNA, complete genome) position: , mismatch: 4, identity: 0.892

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
aaggtcaccagttcgattccggtagtcggcacaaaat	Protospacer
 ******************************* *  *

17. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to LT603033 (Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I) position: , mismatch: 4, identity: 0.892

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
aaggtcaccagttcgattccggtagtcggcacaaaat	Protospacer
 ******************************* *  *

18. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to NC_027364 (Escherichia phage PBECO 4, complete genome) position: , mismatch: 4, identity: 0.892

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
aaggtcaccagttcgattccggtagtcggcacaaaat	Protospacer
 ******************************* *  *

19. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to NC_049942 (Escherichia phage JLK-2012, complete sequence) position: , mismatch: 4, identity: 0.892

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
caggtcgccagttcgattccggtagccggcaccatat	Protospacer
.*****.******************.********* *

20. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to MK817115 (Escherichia phage vB_EcoM_phAPEC6, complete genome) position: , mismatch: 5, identity: 0.865

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
aatgtcaccagttcgattccggtagtcggcacaaaat	Protospacer
 * ***************************** *  *

21. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to MH383160 (Escherichia phage UB, complete genome) position: , mismatch: 5, identity: 0.865

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
aatgtcaccagttcgattccggtagtcggcacaaaat	Protospacer
 * ***************************** *  *

22. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to MK327931 (Escherichia phage vB_EcoM_G17, complete genome) position: , mismatch: 5, identity: 0.865

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
aatgtcaccagttcgattccggtagtcggcacaaaat	Protospacer
 * ***************************** *  *

23. spacer 2.1|1373841|37|NZ_CP046793|PILER-CR matches to KM507819 (Escherichia phage 121Q, complete genome) position: , mismatch: 6, identity: 0.838

taggtcaccagttcgattccggtagtcggcaccattt	CRISPR spacer
aatgtcaccagttcaattccggtagtcggcacaaaat	Protospacer
 * ***********.***************** *  *

24. spacer 1.8|294690|32|NZ_CP046793|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019747 (Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413 plasmid pARA7, complete sequence) position: , mismatch: 7, identity: 0.781

ttgctc-tgataacatggcaaaagaagacatac	CRISPR spacer
-agcacaaggtaacatgacaaaagaagaaatac	Protospacer
  ** *  *.*******.********** ****

25. spacer 1.1|294270|32|NZ_CP046793|PILER-CR,CRISPRCasFinder,CRT matches to NC_017572 (Shewanella baltica BA175 plasmid pSBAL17502, complete sequence) position: , mismatch: 8, identity: 0.75

cctcatcgataacaaaggctaaatcgcattta	CRISPR spacer
cctcatcgataacaaaggtaaaaccatacaga	Protospacer
******************. ***.*..*.  *

26. spacer 1.1|294270|32|NZ_CP046793|PILER-CR,CRISPRCasFinder,CRT matches to NC_009998 (Shewanella baltica OS195 plasmid pS19501, complete sequence) position: , mismatch: 8, identity: 0.75

cctcatcgataacaaaggctaaatcgcattta	CRISPR spacer
cctcatcgataacaaaggtaaaaccatacaga	Protospacer
******************. ***.*..*.  *

27. spacer 1.8|294690|32|NZ_CP046793|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022523 (Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence) position: , mismatch: 8, identity: 0.75

ttgctctgataacatggcaaaagaagacatac	CRISPR spacer
ttgctctggtaacatggctaaagcaaatttga	Protospacer
********.********* **** *.*. *.

28. spacer 1.8|294690|32|NZ_CP046793|PILER-CR,CRISPRCasFinder,CRT matches to MN180251 (UNVERIFIED: Wolbachia phage WO isolate Seq2wOMel_KL2 genomic sequence) position: , mismatch: 8, identity: 0.75

ttgctctgataacatggcaaaagaagacatac	CRISPR spacer
ctgctctgataacattgcacaagatactaaac	Protospacer
.************** *** **** . .* **

29. spacer 1.3|294390|32|NZ_CP046793|PILER-CR,CRISPRCasFinder,CRT matches to MN850643 (Escherichia phage tiwna, complete genome) position: , mismatch: 9, identity: 0.719

aaaatgaccaacaccgcgagaatcacggcata	CRISPR spacer
gaaatgaccaactccgcgagattcgaaggtga	Protospacer
.*********** ******** **. .*   *

30. spacer 1.3|294390|32|NZ_CP046793|PILER-CR,CRISPRCasFinder,CRT matches to MN850572 (Escherichia phage aaroes, complete genome) position: , mismatch: 9, identity: 0.719

aaaatgaccaacaccgcgagaatcacggcata	CRISPR spacer
gaaatgaccaacgccgcgagattcgaaggtga	Protospacer
.***********.******** **. .*   *

31. spacer 1.3|294390|32|NZ_CP046793|PILER-CR,CRISPRCasFinder,CRT matches to NC_049823 (Escherichia phage herni, complete genome) position: , mismatch: 9, identity: 0.719

aaaatgaccaacaccgcgagaatcacggcata	CRISPR spacer
gaaatgaccaacgccgcgagattcgaaggtga	Protospacer
.***********.******** **. .*   *

32. spacer 1.3|294390|32|NZ_CP046793|PILER-CR,CRISPRCasFinder,CRT matches to MK373798 (Escherichia phage vB_EcoS_G29-2, complete genome) position: , mismatch: 9, identity: 0.719

aaaatgaccaacaccgcgagaatcacggcata	CRISPR spacer
gaaatgaccaacgccgcgagattcgaaggtga	Protospacer
.***********.******** **. .*   *

33. spacer 1.3|294390|32|NZ_CP046793|PILER-CR,CRISPRCasFinder,CRT matches to MN850569 (Escherichia phage vojen, complete genome) position: , mismatch: 9, identity: 0.719

aaaatgaccaacaccgcgagaatcacggcata	CRISPR spacer
gaaatgaccaacgccgcgagattcgaaggtga	Protospacer
.***********.******** **. .*   *

34. spacer 1.3|294390|32|NZ_CP046793|PILER-CR,CRISPRCasFinder,CRT matches to MN850607 (Escherichia phage egaa, complete genome) position: , mismatch: 9, identity: 0.719

aaaatgaccaacaccgcgagaatcacggcata	CRISPR spacer
gaaatgaccaacgccgcgagattcgaaggtga	Protospacer
.***********.******** **. .*   *

35. spacer 1.3|294390|32|NZ_CP046793|PILER-CR,CRISPRCasFinder,CRT matches to NC_049825 (Escherichia phage grams, complete genome) position: , mismatch: 9, identity: 0.719

aaaatgaccaacaccgcgagaatcacggcata	CRISPR spacer
gaaatgaccaacgccgcgagattcgaaggtga	Protospacer
.***********.******** **. .*   *

36. spacer 1.3|294390|32|NZ_CP046793|PILER-CR,CRISPRCasFinder,CRT matches to MT360681 (Shigella virus 2019SD1, complete genome) position: , mismatch: 9, identity: 0.719

aaaatgaccaacaccgcgagaatcacggcata	CRISPR spacer
gaaatgaccaactccgcgagattcgaaggtga	Protospacer
.*********** ******** **. .*   *

37. spacer 1.8|294690|32|NZ_CP046793|PILER-CR,CRISPRCasFinder,CRT matches to MK460248 (Streptomyces phage Teutsch, complete genome) position: , mismatch: 10, identity: 0.688

ttgctctgataacatggcaaaagaagacatac	CRISPR spacer
ttgctctcctaacatggcaaaagccaggaact	Protospacer
*******  **************  .. *  .

38. spacer 1.8|294690|32|NZ_CP046793|PILER-CR,CRISPRCasFinder,CRT matches to MN369743 (Streptomyces phage Tribute, complete genome) position: , mismatch: 10, identity: 0.688

ttgctctgataacatggcaaaagaagacatac	CRISPR spacer
ttgctctcctaacatggcaaaagccaggaact	Protospacer
*******  **************  .. *  .

39. spacer 1.8|294690|32|NZ_CP046793|PILER-CR,CRISPRCasFinder,CRT matches to MF358542 (Streptomyces phage Sushi23, complete genome) position: , mismatch: 10, identity: 0.688

ttgctctgataacatggcaaaagaagacatac	CRISPR spacer
ttgctctcctaacatggcaaaagccaggaact	Protospacer
*******  **************  .. *  .

40. spacer 1.8|294690|32|NZ_CP046793|PILER-CR,CRISPRCasFinder,CRT matches to MF347639 (Streptomyces phage Samisti12, complete genome) position: , mismatch: 10, identity: 0.688

ttgctctgataacatggcaaaagaagacatac	CRISPR spacer
ttgctctcctaacatggcaaaagccaggaact	Protospacer
*******  **************  .. *  .

41. spacer 1.8|294690|32|NZ_CP046793|PILER-CR,CRISPRCasFinder,CRT matches to NC_042011 (Streptomyces phage Peebs, complete genome) position: , mismatch: 10, identity: 0.688

ttgctctgataacatggcaaaagaagacatac	CRISPR spacer
ttgctctcctaacatggcaaaagccaggaact	Protospacer
*******  **************  .. *  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

639 : 10710

Vibrio_phage(33.33%)

terminase,head,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158143687.1\|639_1104_+	hypothetical protein	A0A1V0E852	Vibrio_phage	4.2e-28	47.0
WP_158143688.1\|1081_1543_+	DUF1367 family protein	A0A0M3LR84	Mannheimia_phage	4.2e-28	40.4
WP_158143689.1\|1550_1841_+	DUF1364 family protein	A0A2I7R6Q3	Vibrio_phage	3.3e-23	55.4
WP_158143690.1\|1837_2239_+	hypothetical protein	NA	NA	NA	NA
WP_158143691.1\|2572_3109_+	glycoside hydrolase family protein	A0A1U9GSH3	Vibrio_phage	8.8e-78	79.5
WP_158143692.1\|3105_3576_+	hypothetical protein	A0A1V1FD30	Vibrio_phage	1.2e-46	68.7
WP_158143693.1\|3911_4523_+	hypothetical protein	I6S676	Salmonella_phage	1.9e-76	66.3
WP_158143694.1\|4551_5040_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	6.6e-48	65.9
WP_158143695.1\|5014_6451_+\|terminase	phage terminase large subunit	H9C0U8	Aeromonas_phage	9.2e-122	50.5
WP_158143696.1\|6681_8061_+	DUF1073 domain-containing protein	H6WRT0	Salmonella_phage	9.0e-151	60.5
WP_158143697.1\|8026_8863_+\|head	phage head morphogenesis protein	H6WRT1	Salmonella_phage	1.1e-87	59.2
WP_158143698.1\|8921_9962_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.0e-73	42.6
WP_158143699.1\|9948_10710_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	8.7e-79	59.5

DBSCAN-SWA_2

315562 : 323597

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158144937.1\|315562_316231_+	7-carboxy-7-deazaguanine synthase QueE	A0A1B0Z0A9	Vibrio_phage	4.7e-12	29.3
WP_158138498.1\|316242_316941_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.7e-79	63.7
WP_004395197.1\|317060_317285_+	hypothetical protein	NA	NA	NA	NA
WP_158144938.1\|317386_317932_-	hypothetical protein	NA	NA	NA	NA
WP_158143846.1\|318166_319936_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	6.2e-19	23.3
WP_158143847.1\|319938_321681_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	7.1e-44	28.1
WP_072669181.1\|322387_322771_+	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	6.0e-12	42.9
WP_004395202.1\|322919_323597_+	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	4.6e-31	34.5

DBSCAN-SWA_3

1297722 : 1304823

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158144273.1\|1297722_1298613_+	cysteine synthase CysM	C3U2M1	Lactococcus_phage	1.7e-49	39.1
WP_158144274.1\|1298774_1301357_+	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.4e-32	24.6
WP_158144275.1\|1301419_1302397_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	2.6e-35	34.6
WP_158144276.1\|1302469_1303438_-	murein hydrolase activator NlpD	Q8SBN9	Clostridium_phage	2.0e-11	34.7
WP_004395999.1\|1303437_1304064_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.7e-35	50.9
WP_154169165.1\|1304067_1304823_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.2e-65	51.6

DBSCAN-SWA_4

1320665 : 1330390

Escherichia_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158144283.1\|1320665_1322720_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	2.2e-23	25.3
WP_158144284.1\|1322964_1323516_-	nitrate reductase	A0A077SLS7	Escherichia_phage	1.1e-35	46.9
WP_158144285.1\|1323656_1324469_-	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	1.3e-32	37.6
WP_040904699.1\|1324472_1325090_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	8.3e-88	69.8
WP_158144286.1\|1325102_1327541_-	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	1.2e-259	54.7
WP_158144971.1\|1327671_1328199_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_158144287.1\|1328408_1329539_+	glycerophosphodiester phosphodiesterase	A0A220BY94	Staphylococcus_phage	3.0e-11	27.5
WP_158144288.1\|1329643_1330390_-	glycerophosphoryl diester phosphodiesterase	G2J5Q9	Lactobacillus_virus	3.8e-10	25.1

DBSCAN-SWA_5

1825989 : 1892525

Escherichia_phage(25.0%)

tRNA,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158144514.1\|1825989_1827351_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_158144515.1\|1827432_1830423_-	response regulator	A0A1V0SGX0	Hokovirus	5.0e-29	29.2
WP_158144516.1\|1830428_1832357_-	PAS domain S-box protein	W8CYF6	Bacillus_phage	2.2e-25	31.4
WP_158144517.1\|1832366_1833635_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	3.5e-16	35.8
WP_158144518.1\|1833708_1834038_-	hypothetical protein	NA	NA	NA	NA
WP_154169677.1\|1834030_1834420_-	response regulator	W8CYM9	Bacillus_phage	2.0e-10	35.8
WP_158144519.1\|1834770_1835211_+	FMN-binding protein MioC	NA	NA	NA	NA
WP_158144520.1\|1835230_1835803_-	DNA topoisomerase	NA	NA	NA	NA
WP_154169673.1\|1835809_1836286_-	DUF494 family protein	NA	NA	NA	NA
WP_158144992.1\|1836282_1837386_-	DNA-protecting protein DprA	NA	NA	NA	NA
WP_158144521.1\|1837420_1838536_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_083797805.1\|1838582_1839188_+	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-17	41.1
WP_158144522.1\|1839206_1840154_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	5.8e-08	29.1
WP_158137562.1\|1840210_1841491_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_004397573.1\|1841588_1842965_+	Trk system potassium transporter TrkA	NA	NA	NA	NA
WP_158137563.1\|1842998_1844444_+	potassium transporter TrkH	NA	NA	NA	NA
WP_040905819.1\|1844472_1845117_-	hemolysin III family protein	NA	NA	NA	NA
WP_110168332.1\|1845399_1845567_+	hypothetical protein	NA	NA	NA	NA
WP_115152744.1\|1845776_1846058_+	YihD family protein	NA	NA	NA	NA
WP_158144993.1\|1846157_1847144_+	serine/threonine protein kinase	NA	NA	NA	NA
WP_154169665.1\|1847177_1847777_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_158144523.1\|1847921_1849445_-	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA
WP_158144524.1\|1849948_1851595_+	acetolactate synthase 2 catalytic subunit	E4WLQ6	Ostreococcus_tauri_virus	6.7e-60	30.9
WP_158144525.1\|1851594_1851879_+	acetolactate synthase 2 small subunit	NA	NA	NA	NA
WP_004397593.1\|1851891_1852833_+	branched-chain-amino-acid transaminase	NA	NA	NA	NA
WP_158144526.1\|1852846_1854688_+	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_158144527.1\|1854691_1856221_+	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA
WP_158144528.1\|1856557_1857538_+	acryloyl-CoA reductase	NA	NA	NA	NA
WP_040905808.1\|1857810_1858059_+	sulfurtransferase TusA	A0A140XB86	Dickeya_phage	2.0e-08	72.2
WP_040905811.1\|1858195_1858456_-	hypothetical protein	NA	NA	NA	NA
WP_115152667.1\|1858604_1859159_-	TMEM165/GDT1 family protein	NA	NA	NA	NA
WP_004397605.1\|1859575_1860493_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_158144529.1\|1860494_1862561_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_158144530.1\|1863031_1864300_+	valine--pyruvate transaminase	NA	NA	NA	NA
WP_158144531.1\|1864373_1865492_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_004397609.1\|1865496_1865982_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_158144994.1\|1866180_1866738_+	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	1.0e-12	28.0
WP_158144532.1\|1866753_1867668_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA
WP_158144533.1\|1867728_1868565_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_158144534.1\|1868561_1868831_+	DUF1488 family protein	NA	NA	NA	NA
WP_158144535.1\|1868886_1869432_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_158143699.1\|1872438_1873200_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	8.7e-79	59.5
WP_158143698.1\|1873186_1874227_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.0e-73	42.6
WP_158143698.1\|1875014_1876055_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.0e-73	42.6
WP_158143699.1\|1876041_1876803_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	8.7e-79	59.5
WP_158144536.1\|1879791_1881138_+	voltage-gated chloride channel protein	A0A1X9I5Z9	Streptococcus_phage	2.7e-43	36.2
WP_158144537.1\|1881404_1883339_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_158144538.1\|1883342_1884659_+	thiamine phosphate synthase	NA	NA	NA	NA
WP_158144539.1\|1884645_1885446_+	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_158144540.1\|1885445_1885652_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_158144995.1\|1885654_1886416_+	thiazole synthase	NA	NA	NA	NA
WP_158144541.1\|1886420_1887581_+	2-iminoacetate synthase ThiH	NA	NA	NA	NA
WP_158144542.1\|1887776_1888967_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.5e-26	35.7
WP_158144543.1\|1888966_1889812_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_158144544.1\|1889869_1890793_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_158144545.1\|1890785_1892525_-\|holin	choline dehydrogenase	A0A1V0S9J5	Catovirus	5.8e-54	30.0

DBSCAN-SWA_6

2524758 : 2531309

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158144756.1\|2524758_2525892_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	3.3e-66	43.8
WP_158144757.1\|2525903_2527154_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.3e-100	48.7
WP_115152664.1\|2527310_2527760_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_158145013.1\|2527774_2528881_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.1e-45	37.4
WP_004394647.1\|2528892_2529549_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	9.2e-29	36.1
WP_004394648.1\|2529589_2530699_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.2e-60	38.4
WP_004394649.1\|2530838_2531309_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.1e-31	48.0

DBSCAN-SWA_7

2794316 : 2849315

Vibrio_phage(82.93%)

tRNA,terminase,tail,head,capsid,integrase,portal

attL 2803877:2803891|attR 2848906:2848920

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158144852.1\|2794316_2796383_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.4e-59	29.5
WP_158144853.1\|2796541_2797621_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_072669795.1\|2797876_2798518_+	uridine kinase	A0A1V0SAA3	Catovirus	6.0e-33	39.3
WP_158144854.1\|2798606_2800703_+	AsmA family protein	NA	NA	NA	NA
WP_158138717.1\|2800782_2801388_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_158144855.1\|2801757_2803056_-	aromatic hydrocarbon degradation protein	NA	NA	NA	NA
WP_158144856.1\|2803355_2804636_-	transporter	NA	NA	NA	NA
2803877:2803891	attL	NA	NA	NA	NA
WP_158144857.1\|2805258_2806566_+	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_158144858.1\|2806565_2808692_+	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_004394894.1\|2808766_2809642_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_158144859.1\|2810104_2811208_+	response regulator	NA	NA	NA	NA
WP_158145018.1\|2811252_2811648_+	DUF454 family protein	NA	NA	NA	NA
WP_004394897.1\|2811785_2812331_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	9.4e-27	45.7
WP_158144860.1\|2812352_2814371_+	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	2.4e-43	37.8
WP_004394899.1\|2814445_2814775_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_004394900.1\|2814793_2815405_+	recombination protein RecR	NA	NA	NA	NA
WP_158144861.1\|2815494_2815743_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_158144862.1\|2815897_2816338_+	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_158144863.1\|2816449_2817472_-\|integrase	tyrosine-type recombinase/integrase	A0A2I7RNH5	Vibrio_phage	3.0e-159	79.4
WP_158144864.1\|2817452_2817815_-	hypothetical protein	NA	NA	NA	NA
WP_158144865.1\|2817825_2817993_+	hypothetical protein	NA	NA	NA	NA
WP_158144866.1\|2818077_2818890_-	hypothetical protein	R9TNP2	Vibrio_phage	1.1e-10	43.2
WP_158144867.1\|2818912_2819413_-	hypothetical protein	NA	NA	NA	NA
WP_158144868.1\|2819441_2820080_-	chromosome partitioning protein ParA	A0A166YHA0	Vibrio_phage	5.2e-77	68.4
WP_158144869.1\|2820224_2820425_+	Rha family transcriptional regulator	A0A2I7RNG9	Vibrio_phage	2.0e-11	57.6
WP_158144870.1\|2820538_2821081_+	transcriptional regulator	R9TRR3	Vibrio_phage	6.2e-71	76.7
WP_158144871.1\|2821091_2821502_+	hypothetical protein	U3PDF0	Vibrio_phage	3.2e-35	59.0
WP_158144872.1\|2821570_2822104_+	hypothetical protein	U3PB56	Vibrio_phage	6.5e-41	57.2
WP_158144873.1\|2822100_2822721_+	DNA methyltransferase	U3PDF3	Vibrio_phage	8.8e-106	87.8
WP_158144874.1\|2822717_2823047_+	hypothetical protein	NA	NA	NA	NA
WP_158144875.1\|2823053_2825579_+	replication endonuclease	A0A166YHE2	Vibrio_phage	0.0e+00	66.9
WP_158144876.1\|2825588_2827106_+	DNA cytosine methyltransferase	A0A1L5C2B8	Pseudoalteromonas_phage	4.7e-161	56.2
WP_158144877.1\|2827117_2827330_+	hypothetical protein	NA	NA	NA	NA
WP_158144878.1\|2827492_2827831_+	hypothetical protein	Q8HA55	Vibrio_phage	6.7e-07	45.6
WP_158144879.1\|2827825_2828077_-	transcriptional regulator	R9TNQ2	Vibrio_phage	3.3e-35	86.7
WP_158144880.1\|2828145_2828361_-	hypothetical protein	U3PCF7	Vibrio_phage	5.9e-17	61.8
WP_158144881.1\|2828363_2829389_-\|portal	phage portal protein	U3PFK6	Vibrio_phage	7.1e-169	83.2
WP_158144882.1\|2829385_2831212_-\|terminase	terminase	U3PIL1	Vibrio_phage	5.1e-303	88.9
WP_158145019.1\|2831384_2832278_+\|capsid	capsid protein	R9TRS3	Vibrio_phage	4.1e-96	62.1
WP_158144883.1\|2832277_2833297_+\|capsid	phage major capsid protein, P2 family	R9TPZ5	Vibrio_phage	1.2e-104	60.4
WP_158144884.1\|2833300_2834020_+\|terminase	terminase	U3PCG2	Vibrio_phage	7.1e-99	71.4
WP_158144885.1\|2834128_2834590_+\|head	head completion/stabilization protein	U3PFL1	Vibrio_phage	5.3e-63	81.0
WP_158144886.1\|2834586_2835066_+	hypothetical protein	U3PIL4	Vibrio_phage	1.3e-35	47.7
WP_158144887.1\|2835062_2835809_+	hypothetical protein	A5X9H9	Aeromonas_virus	3.8e-18	30.7
WP_158144888.1\|2835819_2836932_+	DUF2586 family protein	U3PB71	Vibrio_phage	1.8e-186	87.8
WP_158144889.1\|2836928_2837384_+	DUF2597 family protein	U3PCG7	Vibrio_phage	5.9e-67	81.3
WP_158144890.1\|2837392_2837599_+	TraR/DksA family transcriptional regulator	U3PFL5	Vibrio_phage	2.7e-27	88.1
WP_158144891.1\|2837598_2837814_+	hypothetical protein	U3PIL8	Vibrio_phage	8.2e-27	79.7
WP_158144892.1\|2837797_2838388_+	glycoside hydrolase family protein	A0A2I7RNI5	Vibrio_phage	3.0e-79	67.9
WP_158144893.1\|2838362_2838704_+	hypothetical protein	U3PB75	Vibrio_phage	2.5e-33	69.0
WP_158144894.1\|2838911_2839193_+	hypothetical protein	A0A160DHS7	Vibrio_phage	1.3e-27	66.7
WP_158144895.1\|2841547_2841880_+	DUF2590 family protein	R9TMS7	Vibrio_phage	3.7e-42	79.1
WP_158144896.1\|2841876_2843082_+	hypothetical protein	R9TRT3	Vibrio_phage	1.3e-161	71.6
WP_158144897.1\|2843074_2843665_+\|tail	phage tail protein	U3PB79	Vibrio_phage	2.7e-80	72.4
WP_158144898.1\|2843661_2845686_+	hypothetical protein	A0A160DJT8	Vibrio_phage	5.8e-98	60.7
WP_158144899.1\|2845685_2846168_+	hypothetical protein	A0A1D9C9S5	Salinivibrio_phage	9.2e-34	50.0
WP_158144900.1\|2846171_2847068_+	hypothetical protein	U3PIM3	Vibrio_phage	7.3e-85	58.1
WP_158144901.1\|2847055_2847529_+	DNA-binding protein	U3PDI0	Vibrio_phage	3.5e-46	63.1
WP_158144902.1\|2847525_2849118_+	hypothetical protein	R9TNN7	Vibrio_phage	1.9e-213	68.3
2848906:2848920	attR	NA	NA	NA	NA
WP_158144903.1\|2849117_2849315_+	hypothetical protein	A0A2I7RNJ8	Vibrio_phage	6.6e-15	70.8

DBSCAN-SWA_8

2855093 : 2866623

Vibrio_phage(53.85%)

integrase

attL 2844618:2844631|attR 2860970:2860983

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2844618:2844631	attL	NA	NA	NA	NA
WP_158144906.1\|2855093_2856272_-\|integrase	site-specific integrase	A0A2H4J1K3	uncultured_Caudovirales_phage	3.5e-34	31.5
WP_072669779.1\|2856273_2856483_-	hypothetical protein	NA	NA	NA	NA
WP_158144907.1\|2856543_2856930_-	hypothetical protein	A0A1V0E8F5	Vibrio_phage	1.6e-20	64.0
WP_158144908.1\|2856926_2857697_-	MmcB family DNA repair protein	A9YWY3	Burkholderia_phage	1.3e-29	35.2
WP_158144909.1\|2857708_2857912_-	hypothetical protein	NA	NA	NA	NA
WP_158144910.1\|2857908_2858337_-	hypothetical protein	A0A2I7RTP4	Vibrio_phage	2.2e-10	33.3
WP_158144911.1\|2858351_2858534_-	hypothetical protein	A0A1V0E850	Vibrio_phage	3.5e-10	52.5
WP_158144912.1\|2858511_2858961_-	hypothetical protein	A0A1V0E8D7	Vibrio_phage	1.9e-49	63.9
WP_158144913.1\|2858957_2859782_-	DNA adenine methylase	A0A0K1LM14	Caulobacter_phage	1.7e-67	47.6
WP_158144914.1\|2859778_2860432_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	8.3e-54	49.5
WP_158144915.1\|2860478_2861585_-	recombination-associated protein RdgC	W6AT81	Vibrio_phage	1.3e-88	44.2
2860970:2860983	attR	NA	NA	NA	NA
WP_158144916.1\|2861659_2862307_-	hypothetical protein	A0A1V0E8E6	Vibrio_phage	5.1e-88	72.2
WP_158144917.1\|2862316_2862844_-	hypothetical protein	W6AT77	Vibrio_phage	2.3e-22	34.8
WP_158144918.1\|2862855_2863068_-	hypothetical protein	NA	NA	NA	NA
WP_158144919.1\|2863060_2863225_-	hypothetical protein	NA	NA	NA	NA
WP_158144920.1\|2863230_2863506_-	hypothetical protein	NA	NA	NA	NA
WP_158144921.1\|2863517_2863772_-	hypothetical protein	NA	NA	NA	NA
WP_158144922.1\|2864041_2865784_-	homogentisate 1,2-dioxygenase	A0A2H4J6P1	uncultured_Caudovirales_phage	1.1e-81	40.6
WP_158144923.1\|2865786_2866623_-	recombinase RecT	A0A193GYL3	Enterobacter_phage	5.8e-68	60.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046794

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP046793

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection