CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046822	Vibrio metschnikovii strain 07-2421 chromosome 1, complete sequence	2 crisprs	DEDDh,RT,TnsE_C,cas3,csx1,cas6f,cas5,cas7f,cas3-cas2,cas1,csa3,DinG,WYL	0	2	4	0
NZ_CP046821	Vibrio metschnikovii strain 07-2421 chromosome 2, complete sequence	4 crisprs	RT,csa3	0	8	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046822_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046822_1

567033-567194

Orphan

Consensus_repeat	Method
ATGCGACACTAGCTCAGTTGGTAGAGCGCAACCTTGCCAAGGTTGAGGTCACG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP046822_1

>merge|NZ_CP046822|1|567033-567194|CRISPRCasFinder
ATGCGACACTAGCTCAGTTGGTAGAGCGCAACCTTGCCAAGGTTGAGGTCACGAGTTCGAACCTCGTGTGTCGCTCCAGATTCAAGCTTTCATTGCACTTAGCAGTGAGATGCGACACTAGCTCAGTTGATAGAGCGCAACCTTGCCAAGGTTGAGGTCACG

>NZ_CP046822|1|1|567033-567194|CRISPRCasFinder
ATGCGACACTAGCTCAGTTGGTAGAGCGCAACCTTGCCAAGGTTGAGGTCACG	AGTTCGAACCTCGTGTGTCGCTCCAGATTCAAGCTTTCATTGCACTTAGCAGTGAG
ATGCGACACTAGCTCAGTTGATAGAGCGCAACCTTGCCAAGGTTGAGGTCACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046822.1\|WP_158137736.1\|573352_574285_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NZ_CP046822.1\|WP_158137731.1\|560058_561591_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NZ_CP046822.1\|WP_158137742.1\|577304_578285_+\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|273883
NZ_CP046822.1\|WP_154169347.1\|565553_566099_+\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
NZ_CP046822.1\|WP_158137726.1\|556408_557368_+\|DHH-family-phosphoesterase	unknown	unknown	unknown
NZ_CP046822.1\|WP_154169340.1\|569672_571427_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|236692
NZ_CP046822.1\|WP_158137730.1\|558649_559876_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_CP046822.1\|WP_154169342.1\|569241_569706_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|182615
NZ_CP046822.1\|WP_158137735.1\|571439_573353_+\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NZ_CP046822.1\|WP_158139002.1\|567910_569023_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
NZ_CP046822.1\|WP_158137738.1\|574782_576072_+\|GTPase-HflX	unknown	unknown	gnl\|CDD\|182934
NZ_CP046822.1\|WP_154169334.1\|574477_574741_+\|RNA-chaperone-Hfq	unknown	unknown	gnl\|CDD\|179001
NZ_CP046822.1\|WP_154169349.1\|564348_565413_-\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
NZ_CP046822.1\|WP_154169359.1\|554423_555488_+\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NZ_CP046822.1\|WP_158137743.1\|578377_578566_+\|DUF2065-family-protein	unknown	unknown	gnl\|CDD\|225782
NZ_CP046822.1\|WP_158137728.1\|557393_558518_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227278
NZ_CP046822.1\|WP_158137723.1\|553360_554161_+\|NAD(+)-diphosphatase	unknown	unknown	gnl\|CDD\|234699
NZ_CP046822.1\|WP_158137725.1\|555605_556256_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379407
NZ_CP046822.1\|WP_158137740.1\|576117_577302_+\|FtsH-protease-activity-modulator-HflK	unknown	unknown	gnl\|CDD\|236799
NZ_CP046822.1\|WP_158137733.1\|561777_563193_-\|DASS-family-sodium-coupled-anion-symporter	unknown	unknown	gnl\|CDD\|238535

Protein	Function_ID	Function_description	E-value
NZ_CP046822.1\|WP_158137736.1\|573352_574285_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	4.02074e-168
NZ_CP046822.1\|WP_158137731.1\|560058_561591_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_CP046822.1\|WP_158137742.1\|577304_578285_+\|protease-modulator-HflC	gnl\|CDD\|273883	TIGR01932, Protein_HflC, HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described. [Protein fate, Degradation of proteins, peptides, and glycopeptides, Regulatory functions, Protein interactions].	4.51158e-148
NZ_CP046822.1\|WP_154169347.1\|565553_566099_+\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	4.36967e-131
NZ_CP046822.1\|WP_158137740.1\|576117_577302_+\|FtsH-protease-activity-modulator-HflK	gnl\|CDD\|236799	PRK10930, PRK10930, FtsH protease activity modulator HflK.	2.42946e-160
NZ_CP046822.1\|WP_154169340.1\|569672_571427_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|236692	PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II; Provisional.	6.03732e-105
NZ_CP046822.1\|WP_158137730.1\|558649_559876_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	5.63031e-134
NZ_CP046822.1\|WP_158137735.1\|571439_573353_+\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NZ_CP046822.1\|WP_158139002.1\|567910_569023_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	0
NZ_CP046822.1\|WP_158137738.1\|574782_576072_+\|GTPase-HflX	gnl\|CDD\|182934	PRK11058, PRK11058, GTPase HflX; Provisional.	0
NZ_CP046822.1\|WP_154169334.1\|574477_574741_+\|RNA-chaperone-Hfq	gnl\|CDD\|179001	PRK00395, hfq, RNA-binding protein Hfq; Provisional.	1.60298e-50
NZ_CP046822.1\|WP_154169349.1\|564348_565413_-\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
NZ_CP046822.1\|WP_154169359.1\|554423_555488_+\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP046822.1\|WP_158137743.1\|578377_578566_+\|DUF2065-family-protein	gnl\|CDD\|225782	COG3242, COG3242, Uncharacterized protein conserved in bacteria [Function unknown].	4.14343e-16
NZ_CP046822.1\|WP_158137728.1\|557393_558518_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	9.92133e-91
NZ_CP046822.1\|WP_158137723.1\|553360_554161_+\|NAD(+)-diphosphatase	gnl\|CDD\|234699	PRK00241, nudC, NAD(+) diphosphatase.	9.55278e-142
NZ_CP046822.1\|WP_158137725.1\|555605_556256_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|379407	pfam13972, TetR, Bacterial transcriptional repressor. This family of bacterial transcriptional repressors is characterized by the short approximately 50 amino acid stretch of residues constituting the helix-turn-helix DNA binding motif, around the YRFhY motif. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The regulatory network in which TetR itself is involved is in being released in the presence of tetracycline, binding to the target operator, and repressing tetA transcription.	1.68272e-47
NZ_CP046822.1\|WP_158137733.1\|561777_563193_-\|DASS-family-sodium-coupled-anion-symporter	gnl\|CDD\|238535	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.	4.25413e-64
NZ_CP046822.1\|WP_154169342.1\|569241_569706_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|182615	PRK10646, PRK10646, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE.	3.32132e-82

>NZ_CP046822.1|WP_154169347.1|565553_566099_+|oligoribonuclease
MSFSDQNLIWIDLEMTGLDPDVHKIIEIATIVTDSQLNVLAEGPVLAIHQSETELQKMDEWCTRTHTHSGLVDRVRRSSINEVQAIEQTIDFLQHWVPAGASPICGNSVGQDRRFLYRHMPELEVYFHYRCIDVSTIKELTRRWQPEIAAGFSKQGTHLALDDIRESIAELKFYRSHVFKI
>NZ_CP046822.1|WP_154169349.1|564348_565413_-|small-ribosomal-subunit-biogenesis-GTPase-RsgA
MTKKKKLTKGQVRRVRNNQHRKLKQEDSVQWDESMLENAKSGLVITRFGQHADIEDPDTKIVHRCNLRRGIESLVCGDQVIWRPGVETLAGISGVVEAVEPRSSVLTRPDYYDGLKPVAANVEQMIIVSSVLPELSLNIIDRYLIAAETLSIAPVIVLNKVDLLSEAQRTDYQQQLAAYQEIGYDVIFVSKESGENIALLESKLSHKINIFVGQSGVGKSSLVNALMPQLGIIAEEGKISENSGLGQHTTTAARLYHIPSGGDLIDSPGIREFGLWHLAAEEVTKAYVEFRPYLGGCKFRDCKHGDDPGCLLREAVENGKISAQRFDNYHRIIESMSENKANRQYSRNKKSDQQ
>NZ_CP046822.1|WP_158137733.1|561777_563193_-|DASS-family-sodium-coupled-anion-symporter
MSTLSTGLLTRLAICFLIPVGVLLLPIDIIPIDELTLVQHRLLAIFLLAALLWVLEPVPVFATSILIIALLLIMISDKGLHWFRSPIEQHEVGHLIPYTDILGAFSSPIIILFMGGFALAIAASKYQLDNNLARVLLRPFGHQPKFIMLGLMLITSVFSMFMSNTATTVMMLALLGPIVASAPKGELGIKALVLSIPIAANTGGIATPIGTPPNAIALQYLTGENSIDFLSWMMMGLPFVIVQLTIAWFLLQYLFPSSQQQMTLKLQGTFQRSWRAIVVYITFATTILLWMSTALHGMNTYVVSIIPLAVFTLTGIMGKEELKQINWDVLWLVAGGIAIGIGLEHTGLAVALAHAIDYESLSPMFIVISLSMVCWLMANFMSNTATANLLMPIAAAIGVSMSSLTEIGGLQGLLVVVAFSASLGMILPVSTPPNSLAYSTGLIESKDMAKTGLILGLVGLCIVYLATWALT
>NZ_CP046822.1|WP_158137731.1|560058_561591_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MSAKKPMALVILDGWGYREDNTSNAINNAHTPVLDALMENHPHTLISASGMDVGLPDGQMGNSEVGHTNIGAGRIVYQDLTRITKSIADGEFQHNEAIVNAIDKAVAEGKAVHLMGLMSPGGVHSHEDHIYAAVELAAARGAEKIYLHCFLDGRDTPPRSAEGSLARFQDLFSKLGKGRIASLIGRYYAMDRDNNWDRVQQAYDLLTQAKAAFTYDSAVAGLNAAYAREENDEFVKATEIRSADQESAAMQDGDAVLFLNYRADRAREITRTFVADFDGFTRQVFPNVNFVMLTQYAADIPLATAFPPASLENTYGEWLSKAGKTQLRISETEKYAHVTFFFNGGAENEFPGEERQLVASPKVATYDLQPEMSSKELTDKLVAAIKSGQYDAIVCNYPNGDMVGHTGVYEAAVKACEAVDECIGRVVEAIKEVDGQLLITADHGNAEMMINPETGGVHTAHTSLPVPLIYVGNKSITLQEGGKLSDLAPTMLALADMEIPADMSGKVLYS
>NZ_CP046822.1|WP_158137730.1|558649_559876_-|DEAD/DEAH-box-helicase
MTFSELNLASSLLSALPAELHTPTTIQQLAIPVILSGRDLLALAQTGSGKTFAYGLPLLQKTLPMTPHIQTLIIVPTRELATQVSQALGLIAKPMNIDVCPLCGGVDQQWQQDQLAQNPQLIVATPGRLLDLIEQQIINLSSLQHLVLDEADRLLEMGFWPDVQRIMTHLPAKKQTLLFSATLLPELEEKALQPLNDPIKISANLPNQTVPEIDEQLYLVNKGSKAQVLIHLLKQHHWSQVLVFISARDNADALAKKLLKAGIRVAALHGNKDQTEREQILTQFKQQKIEVLIATDLLARGIHIEQLPVVINFDLPPSPAVYIHRVGRTARAGQTGLALSLVCHNENAILDAIRQLTQRPLVLQTLADFPVTDQPATTVPKRQPRDKQANRRSAQKRSVKQFQPKSSR
>NZ_CP046822.1|WP_158137728.1|557393_558518_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MTLSILKLTVRLLAVCLAITTSSGAAYAASQQELSGVKNEISRQQQSLSQRQKELDQLQRSLRQQELSISQLENQIKNTQRDVVTANDNLANIQKNRLELEQQRQQQTEKLTQLLQTYYVTQRALASGDLLKSGVEQDRISQYYQHLAKARTETLRRLQTTHQALNESEKQLQRERDQITALLQQQTDKRDKLASTQAERRKTVNTIQQSISGDQVYLAELQRNETRLKAEIAKAAKRNAVPMDGLAQQRGKLPWPLQGNVLHQFGEKQTGQVDWKGMVISANYGQAVKAVYPGTVVFAEYLRGYGLVILLDHGKGDMTLYGYNQSLMKKEGDKVVAGDTLALAGDTGGQSRPALYFEIRRNSRAENPRQWLRR
>NZ_CP046822.1|WP_158137726.1|556408_557368_+|DHH-family-phosphoesterase
MHYDVFNGDADGIIALLQLRLAEPIESQLVTGVKRDIQLLKKLTVNPGDSLTVLDISMAKNAFDLQRLLSEGASVFYADHHQSGDIPTHPHLTANIDLSANTCTGLIIDRLLAGRFHHWAIAAAYGDNLIATANQLALQAGLTTFQAEQLQSIGTLLNYNGYGQQLEDLHFHPAELLRSLLNYPCPFMLIDDNHSPYHRLKQAYQQDMAQVQSLEAYYQSRELRVFVLPNQSASHRVSGVFGNLLANQQPSQAHLIVTEADSESYTVSLRAPLANKQGAGAICAQFVSGGGREAAGGVNRLAKSQLSQLIERVETYYRY
>NZ_CP046822.1|WP_158137725.1|555605_556256_+|TetR-family-transcriptional-regulator
MKTRERIIHAALALFNEHGERPITTNHIAAHIDISPGNLYYHFRNKQEIVREIFAWYSAELIERFSPWQGQYESLTLLKHYLDSIFNLMWKYRFFYANLPEILQRDPELHQSYIQVQDKLQVNLINIMQVFIDMQLLVIDDQEMKKLVTTLHLIASSWLAYQSAMSANASITERVIHQGMLQIISVMKPNATPQGLEQLQLLEEGVRAMHASTING
>NZ_CP046822.1|WP_154169359.1|554423_555488_+|uroporphyrinogen-decarboxylase
MTELKNDRYLRALLKQPVDCTPVWMMRQAGRYLPEYRATRAQAGDFMSLCKNAELASEVTLQPLRRFSLDAAILFSDILTIPDAMGLGLYFEAGEGPKFERPITCKADVDKIGLPDPEGELQYVMNAVRQIRKDLQGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYAEPALLHRLLDKLANSVIEYLNAQIKAGAQSVMVFDTWGGVLTPRDYQSFSLHYMHKIVDGLIREHEGRRVPVTLFTKNGGMWLESIAATGCDAIGLDWTINIADAKARVGDKVALQGNMDPSMLYASPQRIRQEVASILEGFGTGSGHVFNLGHGIHLDVPPENAGVFVDAVHQLSTPYHR
>NZ_CP046822.1|WP_158137723.1|553360_554161_+|NAD(+)-diphosphatase
MLENSDAKAAYWCVVSGSEIWTIDGSIPFGCAQQWRLPIEYAVLIGEHNQAPVYWINAQEIADELPMVNLRTLLSMDSALFLLASKAVQYGHMSQTQRFCSQCGGRNRLNHHQLAMQCQECRTLHYPRIFPCIIVAVRKDDQILLAQHPRHRGGMYTVIAGFLEVGETLEQCVAREVQEETGIIIDNIRYVASQPWAFPSSMMMGFLADYAGGELNPDYSELTDAQWFSEPHLPDLAPHGTIARALIEQTLTDIRVKNDKIDSHSF
>NZ_CP046822.1|WP_158139002.1|567910_569023_-|tRNA-epoxyqueuosine(34)-reductase-QueG
MDLHSLAEQIKQWAKELGFDKAGICDVDLSQHEATLQAWLDAGYHGEMEWMARHGMLRARPAELLPGTLRVISVRINYLPPQAQFAANLSDPTQGYISRYALGRDYHKLVRNQLKKLADKIEQEVGQLGYRPFVDSAPILERPLAQKAGLGWTGKHSLILDKEAGSWFFLGELLVDIPLPVDTPSENQCGQCRACMTSCPTGAIVEEGVVDARRCISYLTIEYSGVIPEEFRTAIGNRIYGCDDCQLVCPWNRFADLTQKDDFHRREVLNNADLVALFSWDEKTFLHHMQGSAIRRIGHQQWQRNLIIAMGNAPYSQRIIDALEQKTGESELLDEHIEWALTQQREQLASITNKQQRLIRIIEKGLPRDA
>NZ_CP046822.1|WP_154169342.1|569241_569706_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MTIKTFTLKDEQQTVMLGMRLAQLCSQQTTLYLYGDLGAGKTTLSRGFIRALGHEGNVKSPTYTLVEPYQLADWQVYHFDLYRLADPEELEFMGIRDYFTDDAICLVEWPEKGQGLLPTPDLTISLRYEGEQRQASVSANSEYGCTLLSQLELC
>NZ_CP046822.1|WP_154169340.1|569672_571427_+|LysM-peptidoglycan-binding-domain-containing-protein
MHLIESVGVMLSINYGRFLRYWWLLVTLLSAISSVQANVLEGVRVWPSPDATRVVIDLKSEADFSYFTLSSPERLVVDLKQTSLAAVLPVTVSDSAILKRIRASTPPEKTTFRLVLELANKSTPNIFKLPPTPGGQYGHRLVIDLPHSPAPAAATSSTPARSPNVVSRDASQLVGTADIIIAIDAGHGGEDPGSIGPTRKFEKDATLSVSKKLADQINAVPGMKAVLTRTGDYYVSLNNRTEIARRNRAHLLVSVHADAFHTPQPRGASVFVLNTRRANTEIARWVENHEQQSELLGGAGEVLARTNNDRNVSQTLLDLQFSHSQKEGHKVATNLLQELGKVAHLHKAEPVNASLAVLKSPDIPSVLVEIGFISNPIEERLIFQRSHQDKLARAMGKALVQYFEENPPEGTLFANRGKTQQHQVQRGESLSVIAQKYGATVSGIMQANKLKDSRLTVGQRLTIPGGERGPIPVPVVNNPVETETITHVVKSGEFLGRLAANYKVSIDAIRRENNLKSDTLFVGQKLNITVSLKDKPLRKHTVQSGEFLGRIANQYNVTVQSIREANQLRSDQLAVGQVLIIPNR
>NZ_CP046822.1|WP_158137735.1|571439_573353_+|DNA-mismatch-repair-endonuclease-MutL
MTIRILPARLANQIAAGEVVERPASVVKELVENSLDSGATRIEIDIEKGGAKLIRVRDNGSGINKDELGLALSRHATSKIQTLDDLEAIISLGFRGEALASISSVSRLTITSRPATQEEAWSAYSEGRDMAVKLQPSAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIALSRFDVSLTLRHNGKIIRQYRAASSERQEENRLAAVCGAPFVKHMLKIELAHQGLRLHGWITTPQGARQQSDLQYCYVNGRMMRDKLINHAIRQSYESSLRPDQCATYVLFIELDPHLVDVNVHPAKHEVRFHQARLVHDFIYQALSGALADSQHIETPELNQAAFSAPVPTYMSNERSTEPDQPARNLSDKDGYSRQYLTTERPSQAVIQEAKASHSWNRPTTAKPRSSAPVMAEQSQAYQQLMKVSEAPVSIENRLSTTEKSSTLSRIVTKLGKAIAVVDGQYLLMTTDQGCVLLALTKAVEWRVRGQLNSQEEPLKSQPLLVPLSVKVSNEEIRGFELYRELLERLGIHLVTRSHQTVMVMGVPQPLRQQNLQLLIPDLLSYLASHGASGVLTLNVDNIVTWLSQRVLIEKNDYTLSEAIQLIAELEQLWPGKLPLHDGHFIQPVDFSATIAALN
>NZ_CP046822.1|WP_158137736.1|573352_574285_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MTKPLPLALFLMGPTASGKTDLAIRLRQKYPVEIISVDSALIYKGMDVGTAKPDARELALAPHRLIDILDPSEAYSVADFRQDALREMQAIVNEGKIPLLVGGTMLYYKALLDGLSPLPAANPAVRQQIESQAQEQGWAALHAQLQQIDPISAARIHPNDPQRLSRALEVYKISGKTLTELTQTKGESIPFRVKQFAIAPMDRAELHRRIELRFEKMVKSGFEEEVKALYDRNDLHPDLPSIRCVGYRQMWDYFDGNSTLDEAIYRGICATRQLAKRQLTWLRSWDELTWLDSENIERAVETLANAIASD
>NZ_CP046822.1|WP_154169334.1|574477_574741_+|RNA-chaperone-Hfq
MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAISTVVPARPVSHHTGERPAGERGTEKSDD
>NZ_CP046822.1|WP_158137738.1|574782_576072_+|GTPase-HflX
MFDRYEAGERAVLVHINFTQKGEWENLKECEMLVSSAGVSTLQVVTGSRQSPHPKYFVGEGKAQEIAQAVQSTEADVVIFNHSLSPAQERNLEQLCQCRVIDRTGLILDIFAQRARTHEGKLQVELAQLRHISTRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRERIKAILRRLEKVAKQREQGRRARNRAEIPTISLVGYTNAGKSTLFNQITSAGVYAADQLFATLDPTLRKIELLDVGPAILADTVGFIRHLPHDLVAAFKATLQETQQADILLHVVDASDDRFRENIQAVDDVLLEIDAHEVPSLLVMNKIDNLEGQYPRIERDDEGVPRAVWVSAMDGLGMDQLFTALTERLASNIVQYCLRVPPEHQGRIRSTFFQMNCIEKEEYDPEGNLLISVRMQQVDWSRLEKREEAVLRDFIVT
>NZ_CP046822.1|WP_158137740.1|576117_577302_+|FtsH-protease-activity-modulator-HflK
MAWNEPGNNNGNNGRDNDPWGNNNRGNKGGREQGPPDLDEVFNKLSQKLGGKFGKGGSGPSFAGGGAMGFGVIAVLAVAIWFFSGFYTIGEAERGVVLRLGQYDRVVNPGLNWRPRFIDEVTPVNIQAIRSLSASGIMLTKDENVVNVAMDVQYRIVDPYKYLYRVVNPDDSLHQATDSALRAVIGDSLMDSILTVGRQQIRQSTQQTLNQIIDDYDMGLLVVGVNFQSSRPPEQVKDAFDDAIAAREDEERFIREAEAYMNEILPQATGRAERVKREALGYSERIINEAFGQVAQFEKLLPEYQAAPEVTRNRMYLDTMEQVYTNSSKILIDSESSGNLLYLPIDKLAGQEGASQSRQTRSLSLQDEAGLQSQRNDPSSSTPPRSTNTRQGRN
>NZ_CP046822.1|WP_158137742.1|577304_578285_+|protease-modulator-HflC
MRKLMIPVIVVFLALLLMSMFVVPEGERGIVIRFGRVIQDDNEMSKIYEPGLHFKMPIFDRVHTLNARIQTMDGRSDRFVTSEQKDVIIDTYVKWRIEDFGQFYLATGGGNIFTAQALLERRVTDVLRAEIGSRDIKQIVSGPRNEAVLPDSPDDEIVTTEAARQALEVDGQRDQIMANVLKDTRVNASKDLGVYVVDFRMKKINLPDEISESIYRRMRAEREAVARRHRSQGRERAEVIRAQADLEVATILAEADRTARITRGQADATSAKVYADAYSKDPEFFSFLRSLQAYENSFSQKSDILVLDPKSDFFQYMNSAKGSSVK
>NZ_CP046822.1|WP_158137743.1|578377_578566_+|DUF2065-family-protein
MTTSLWIAIGLLLIAEGLGPLIAPQGWRTMMQQLAQQEDNQLRRIGGCLVVIGMVIVYVFML

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Crispr_ID: NZ_CP046822_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046822_2

1767928-1768255

Unclear

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT

5 spacers

cas6f,cas5,cas7f,cas3-cas2,cas1

The CRISPR arrays of NZ_CP046822_2

>merge|NZ_CP046822|2|1767928-1768255|PILER-CR,CRISPRCasFinder,CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAACTGTTTTTTCCTGCTCTTTTCTTAGTTCAATTATTTCTAAGCTGCCTGTGCGGCAGTGAACGCGTCTCTGAAAAAGAATGGTGTCACAAGAAATTTCTAAGCTGCCTGTGCGGCAGTGAACGTCAAAGATAAGCATTTCCACGTATTGGATCATTTCTAAGCTGCCTGTGCGGCAGTGAACGCTAGATCCGACATTGCGCTCAACTACTCAGTTTTCTAAGCTGCCTGTGCGGCAGTGAACGAGATGGTGGATGGCATTTACGAGAGTGACGATTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP046822|2|1|1767928-1768255|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTTTTTTCCTGCTCTTTTCTTAGTTCAATTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCGTCTCTGAAAAAGAATGGTGTCACAAGAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTCAAAGATAAGCATTTCCACGTATTGGATCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCTAGATCCGACATTGCGCTCAACTACTCAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAGATGGTGGATGGCATTTACGAGAGTGACGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP046822|2|2|1767928-1768255|CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTTTTTTCCTGCTCTTTTCTTAGTTCAATTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCGTCTCTGAAAAAGAATGGTGTCACAAGAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTCAAAGATAAGCATTTCCACGTATTGGATCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCTAGATCCGACATTGCGCTCAACTACTCAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAGATGGTGGATGGCATTTACGAGAGTGACGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP046822|2|1|1767928-1768255|CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTTTTTTCCTGCTCTTTTCTTAGTTCAATTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCGTCTCTGAAAAAGAATGGTGTCACAAGAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTCAAAGATAAGCATTTCCACGTATTGGATCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCTAGATCCGACATTGCGCTCAACTACTCAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAGATGGTGGATGGCATTTACGAGAGTGACGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046822.1\|WP_158138507.1\|1760803_1761457_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046822.1\|WP_158138512.1\|1768385_1768937_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_CP046822.1\|WP_158138511.1\|1765755_1767516_-\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|225882
NZ_CP046822.1\|WP_158138504.1\|1754734_1756069_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP046822.1\|WP_158138517.1\|1775167_1776775_+\|GHKL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225827
NZ_CP046822.1\|WP_158138515.1\|1770915_1773852_-\|CRISPR-associated-endonuclease-Cas3''	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|187804
NZ_CP046822.1\|WP_158138513.1\|1768945_1769956_-\|hypothetical-protein	cas5	cls000078_cas5_CAS-I-F	unknown
NZ_CP046822.1\|WP_158138518.1\|1779101_1780385_-\|citrate:sodium-symporter	unknown	unknown	gnl\|CDD\|377030
NZ_CP046822.1\|WP_158138519.1\|1780578_1781649_-\|alanine/ornithine-racemase-family-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|143490
NZ_CP046822.1\|WP_158138505.1\|1756348_1757704_-\|DASH-family-cryptochrome	unknown	unknown	gnl\|CDD\|274288
NZ_CP046822.1\|WP_158138509.1\|1764849_1765317_-\|DUF1456-family-protein	unknown	unknown	gnl\|CDD\|227144
NZ_CP046822.1\|WP_158138506.1\|1757830_1760632_-\|TolB	unknown	unknown	gnl\|CDD\|223893
NZ_CP046822.1\|WP_158138510.1\|1765415_1765664_-\|TIGR03643-family-protein	unknown	unknown	gnl\|CDD\|378528
NZ_CP046822.1\|WP_158138516.1\|1773848_1774838_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP046822.1\|WP_154168041.1\|1762792_1763491_+\|response-regulator	unknown	unknown	gnl\|CDD\|236738
NZ_CP046822.1\|WP_154168039.1\|1763500_1764790_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236724
NZ_CP046822.1\|WP_004395169.1\|1777539_1778865_-\|anaerobic-C4-dicarboxylate-transporter	unknown	unknown	gnl\|CDD\|237115
NZ_CP046822.1\|WP_158138508.1\|1761449_1762622_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046822.1\|WP_158139046.1\|1776785_1777448_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP046822.1\|WP_158138514.1\|1769964_1770912_-\|hypothetical-protein	cas7f	cls000079_cas7f_CAS-I-F	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP046822.1\|WP_158138512.1\|1768385_1768937_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.26992e-76
NZ_CP046822.1\|WP_158138519.1\|1780578_1781649_-\|alanine/ornithine-racemase-family-PLP-dependent-enzyme	gnl\|CDD\|143490	cd06815, PLPDE_III_AR_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.	1.03474e-163
NZ_CP046822.1\|WP_158138511.1\|1765755_1767516_-\|glycosyl-hydrolase	gnl\|CDD\|225882	COG3345, GalA, Alpha-galactosidase [Carbohydrate transport and metabolism].	2.71777e-97
NZ_CP046822.1\|WP_158138504.1\|1754734_1756069_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NZ_CP046822.1\|WP_158138517.1\|1775167_1776775_+\|GHKL-domain-containing-protein	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	1.17212e-117
NZ_CP046822.1\|WP_158138515.1\|1770915_1773852_-\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	1.23047e-37
NZ_CP046822.1\|WP_158139046.1\|1776785_1777448_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	6.20456e-64
NZ_CP046822.1\|WP_158138518.1\|1779101_1780385_-\|citrate:sodium-symporter	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	3.74699e-163
NZ_CP046822.1\|WP_158138505.1\|1756348_1757704_-\|DASH-family-cryptochrome	gnl\|CDD\|274288	TIGR02765, deoxyribodipyrimidine_photolyase, cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes. [Cellular processes, Adaptations to atypical conditions].	2.02245e-166
NZ_CP046822.1\|WP_158138509.1\|1764849_1765317_-\|DUF1456-family-protein	gnl\|CDD\|227144	COG4807, COG4807, Uncharacterized protein conserved in bacteria [Function unknown].	6.23726e-43
NZ_CP046822.1\|WP_158138506.1\|1757830_1760632_-\|TolB	gnl\|CDD\|223893	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion].	6.00713e-05
NZ_CP046822.1\|WP_158138510.1\|1765415_1765664_-\|TIGR03643-family-protein	gnl\|CDD\|378528	pfam10985, DUF2805, Protein of unknown function (DUF2805). This is a bacterial family of proteins with unknown function.	1.11707e-40
NZ_CP046822.1\|WP_154168041.1\|1762792_1763491_+\|response-regulator	gnl\|CDD\|236738	PRK10701, PRK10701, DNA-binding transcriptional regulator RstA; Provisional.	4.99154e-86
NZ_CP046822.1\|WP_154168039.1\|1763500_1764790_+\|HAMP-domain-containing-protein	gnl\|CDD\|236724	PRK10604, PRK10604, sensor protein RstB; Provisional.	2.70883e-66
NZ_CP046822.1\|WP_004395169.1\|1777539_1778865_-\|anaerobic-C4-dicarboxylate-transporter	gnl\|CDD\|237115	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed.	0
NZ_CP046822.1\|WP_158138516.1\|1773848_1774838_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	2.05436e-171

>NZ_CP046822.1|WP_158138511.1|1765755_1767516_-|glycosyl-hydrolase
MSSLTLPCQREIDLSSELNVVLQDNELHFSYLGRDSVPISDRYVLFRMALKSDPHARVIGDGFQMLAQTAGTVSHPLDVGRCPDNDQSYRLYASHANKRYYNYLVIEDKDQYQLVGFTSCQRFAGYFELVVEEETTYLIAAIDGEQTLPSDWPNHRLESLIVLQHSSLAEIYQQYAHAIQRHHRSRDGVTQPAPIGWCSWYAYYAEVNEQHIRANLAAMQGELAEVEWVLLDDGYQAFMGDWLTPSDKFSGGVKALLQSIKAAGKKPAIWLAPFIAQPESALFQQHPDWFVKNHQGQPLKAEDVTYGGWRCTPWYVLDGSHPQAQAYLTHVIKTMREEWGVELFKLDANYWGTLKGLRYQSGVTGVEAYRMGMQAIAQGAGEAWLLGCNAPMWPSLGLVDAMRVSDDVERRRQRFAQIAKETFYRSWQHRQLWQIDPDCATLVSLADQATDLASYEFHRNVLLACGGVLLSGDPLTELTPFAKSSLQQLIARQHQTQETSTPTSLALNHWRLALTPNHELHCLFNDQATSQHYTLTATQPVDWYDYWSGEKLVQQPAQVLDVSLAGGLTSRAIVASTERTHSSYRE
>NZ_CP046822.1|WP_158138510.1|1765415_1765664_-|TIGR03643-family-protein
MFSADEQSRIIEMAWEDRTPFEAIFHQFGLTEPQVIHFMRRHLTTRSFNLWRKRVSGRETKHLKLRPPEVDRGYCPTQYKPR
>NZ_CP046822.1|WP_158138509.1|1764849_1765317_-|DUF1456-family-protein
MTNNDIFCALRTTFAFNDQTLLEIFHLADNETTPAQLASWLSKPQAPEFAELSDPQLASFLNGLINLKRGKREGEAAKPEANLNNNMVFQKLRIALNLQADDLLTLFQQVGVELSKNEIGAFFRKPGNKHYRECSDATLRQFLQAVEHHTPAVTE
>NZ_CP046822.1|WP_154168039.1|1763500_1764790_+|HAMP-domain-containing-protein
MKRLYLELYLALVGIFMFTLVSYVSINDWLSPDLDLVARSQQIQSSLELLEFVADQHGVDVAKEKLQAIADANWLVIDALSENSPLLTPQVRERLANHGVFTTDDDGSIFTFNPTDTIYHIYRDPEAEIWIASEIEGWVFVLVLMGCFAVYSMVMMKLFMWRFKHLEQVTQALAKGDLSIRAKETGSMRLGTLNRSFNAMADKISHLIESHKMLTNAIAHEVRTPLFRIQCQLDMLQDMPEKKDKYIAGIEDDIHELEEMINELLRLGKMETTPLTFISLDLAQWLPTQIEKWQIESPVTIELQAPQQWPTPLVDSNLLNRAISNVVRNASRYAKQQVKISVSCDYIDWTVTIEDDGPGIPETHWPHIFKPFYRVGSARDKASGGFGLGLAIAEQIARQHHGHLIVTSSSSLGGACFKFTLPLDISEER
>NZ_CP046822.1|WP_154168041.1|1762792_1763491_+|response-regulator
MKIVLIEDDVKLAELLTSYLENNEFEVHLAHDGLQASALILQVQPDLVILDLMLPGLDGLSICREIRNDYKGKIVFLTASDDDIDHVAALELGADDFVNKPIKPRVLLARIRMLLRRQQQTELAHPDNDHQLHFGQLSINHKLRQCSLSGEDIVLTDSEFDLLWLLASHAEQVLSREYLVKETRGIEYDGLDRTIDNKVAILRRKLGDSSSVPKRILTLRGKGYLFVPESWS
>NZ_CP046822.1|WP_158138508.1|1761449_1762622_-|hypothetical-protein
MNSIQPYENRTRLVGLDFLRGLVIFMAIFEHYTGYLNYWYVDFFPKESDFYETLYRSHLPMLGQLVPMDSFTGQVSAWLIPWVSQVYLALAAFNLSARSSEHMRATLVKKLALFLSIIFVLYIEGFIIAPNFGEAISFYPVMLWMTLLAFFSIVYAFFGIRGMLVLTVLSTIVSQLGVTSLLEHAELWMQTHVHPGYELDARLDLFMASGCFGFLYGWVWHHYAEKRDALNKLVLGIALVALSLYFLNGQAATIDLHDVYAEEHALAEDTIGRLGIWGTEFLVIGLILTLHQAGIRLSWRPLNWIGMYSLTVFIFHKSIFIFLWGPLLTWASAKMGTTLPNNFLLIFTLCSLSVGIIYLFKRSGIICHLMGDHQDQMWKDVYRKKRLSDA
>NZ_CP046822.1|WP_158138507.1|1760803_1761457_-|hypothetical-protein
MLNPTMILAYQAIIVLTLTLWVGVVRCDEFSLGASFGIDSPAVSSSTKWEWSPSIAYEKETEFGLFFAQGGEAGLALPMPYWDKAYFTVGPVLLSEEQGSSRIGSSLRIGYLFTESLSASLAWQKDWSNAVGSQWLIDGSYQLNDKWSINGWSRYADKHNQALRDVSGTWRDVGISVEWETPFLSDWVSSVEVGVNHQVDRNFTEPVLTWSVRYLFW
>NZ_CP046822.1|WP_158138506.1|1757830_1760632_-|TolB
MSKTLALSPIMGLMACLGLHSPHVLAEPVAWDQAGQVWQTQQSAHFVVHFRSELASSAARALDIAEQVHQELASQFAQMPSEKTHLTVVDDYDYSNGWATPLPYAQIRLIINPPSDVNGLEGNDEWLHLLIRHEYTHIIHMEMNDGAVTIGRGIVGRHPLLFPHAFTPSMLLEGLAVYMESQNDHGVGRLHNSHFAMQMRMEVASGELADIEQVVVANKRLPFGSNYLYGAYFVQYLAKTYGEESVQAFLTDYSGYLVPGLFLNLSARHIFGKDFFALWEEFRADLNTQFVDQLTSNEAFTYHELDAQPFEYLLAHDNDTLLAWRRNGDDRANLAQWDAKHGQWQSLVSTKSLTSIDSHPTQGLVVSQINSYVDGRVFNDLYRYVDGQWQRLTEQQRFVQARWSNDGQSIFAVRHQQGLAELWQIELNGKQTQLWQGEANWVLGDMAVSPNGDIYATVKAPFQSWNIMRFDQPTQSWMAVTETAATEHQLSFTAQGDLLFSADYTGRYQIYRLDLQTNIVEQLTAEIGGAFSPQSGPEGIVYQAYEHDGYHLRRVENPQGLADIPLSTLPVANTVNAAPIATITATEKSQPKGYSPLSTLAPRYWVPVWQSDDNQSLFGVATSGSDVLGRHQYEIMAAWDSKNAFAAYQFGYQYDNRWQATLSREHEFKFNALTGKDDRIVRQDDFTLQRNHLWHAFDDHLNVGVGTYWQKEALVKSPQGSHYADASNEWLAGGAIQWDNREDLLNIPGYAWGHYADLVWETNIDGDYSGQKWQAQWQANWDLPGRLRLTTHLAAGYADAKAKPFELGGYTGDEAQLYGRNELKLRGYGSAAQVGQQYATQSIELSRLLYRAERNWGLWPIGLGDISATAFVDSGSSWNSQQSYSALTGIGAELQIDAIVLYGNALPIHIGYAHGLDSKLGKDEVYIKLAAEF
>NZ_CP046822.1|WP_158138505.1|1756348_1757704_-|DASH-family-cryptochrome
MSIRSLYWFTNDLRISDNPLLAQAAQNSHQLTCCYLIPSLTPLDQRFQVVASNGLAKQRFLLESLADLDAKLQTLGQSLQIATGEPVSQLCQFIELTEANHLYVSESVDFAIHQTLREVRLRYPQLTVVSLNTHRLFEQAELPFSLAALPDSFSVFRKQVESLDGRYSSQSARWNSDITALPPSVLPSSSSWLSTAIRSINLELRSSPLWRGGESAALEHLEDYFSSDAPLIYKQTRNALDEWESSTKFSSWLANGCLSIGRLLARLNDYETQRGANESTYWIYFELLWREYFQWYALKYGAQLFQFSGIKGQVPLTSYYPQRMRSWINGTTPYPIVNAAMKQLKATGYLSNRSRQLVASCLVHELSIDWRYGAQYFQSQLIDYDVASNWGNWQYLAGVGADPRGHRRFDLAKQTALYDPELSFIRHWQGEADQHSIDVVDMVDWPVSPAQ
>NZ_CP046822.1|WP_158138504.1|1754734_1756069_-|cytochrome-ubiquinol-oxidase-subunit-I
MLDTLMLSRIQFAANISFHILFPTITIALAWIMVFFKWRFVRTQAQLWLDLYYFWVKVFALTFALGVVSGITMSFQFGTNWPGFMEKVGNVAGPLLGYEVMTAFFMEATFLGVMLFGRGRVPEWVHTLSTVLVAIGTSLSAFWILVLNSWMHTPTGYELIDGIVHVTSWKEVIFNPSMPYRLAHMLLASLLTASFVIAGISAYQYLRNSQLNAAKVGMKVAIILAAVGIPVQILVGDLHGLNTLEHQPAKIAAMEGVWETEQGAPLLLFAWPDETTRSNHFEVGIPKLASFILTHDLNGEIQGLNEFAPDHPPVKPLFFGFRIMVGVGMLMLLVSWYGAWRLLRQQSLPKPYLYTLVAMTFSGWVATLAGWYVTEIGRQPWLVQGVLRTSDAVTTVASSSVATSLVMYLIVYAVLLVAYIHTLFYLARQFSSPTETATTNEQKV
>NZ_CP046822.1|WP_158138512.1|1768385_1768937_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDSYIDIRLKPDAEMLEAELSSKVFTKFHKALVMLNSDQIGISFPEVNVKLGRLFRLHGEASFLHDLQGLNWLGPLSGYCQVSEILAIPEQVQYRVISVKRSNLSQAKLRRLIARGSIDKEGEKRYKVKMLSQGFDNPYLDLFSSSTKQVHRKFFEFGEMQPLPVSGKFDSYGLSHTTTVPWF
>NZ_CP046822.1|WP_158138513.1|1768945_1769956_-|hypothetical-protein
MKIIIEYDSCWRNSFLGGSNNDPVPKKGREFLGSMTNLKKEGNFKVCETTLDTVMGILNRLIGDQRKLYQARSNIHETSYYFSELEDKVSFTDKPQFTNEMTFIRNMNGSTDQNSFTGMIKVSDPVFNSEYSQQFWGVLNLDFNQLCDFIIKQSQVEVSIELDPLSIINRLESLNKEKAIELNDNLALVIDILNKNFPEIEYLNNKNLITPISLYCSALYLQLSRLEKNYDMATAKTKSGGISGISKRGFTKKDFMDRYTTGSKKTIWGNPFIKKEKIKGQGEVTSMMTKASGQLEINIDVDRNKAQEIKSLIENAGVSSFYLGKKGLAYVSNIRL
>NZ_CP046822.1|WP_158138514.1|1769964_1770912_-|hypothetical-protein
MEKVTGIKSVDFKIKALGHGVVNWNGPTTLTGDNGKTVDNHTLPKLRGYTNLTGKVKEETGYKYKKEATDIDFKKTPLYISQNCIRHHLFRDQAFDLHFAAEKNLEMVLASITGLIRGYVVPSSQCKRTSPLLLEDFIDQLGNGNFEQFGQAGARDSSSFFSKTTFGDTEYVSYGSISIEQLQFISLDKKFDRASMIIKEGQGEEVAKTVQDFIQSLNPSLNPVAIFHSNYVRKGTIFEEGECGILLNDDAVKILVTETLDRLANLSIRQAKGYMYVDEITVDYNDSHKMMRIKRDESEIINEQHIPFAQYFYAK
>NZ_CP046822.1|WP_158138515.1|1770915_1773852_-|CRISPR-associated-endonuclease-Cas3''
MMVTFVSQCEKNALKKTRRVLDAFANRIGDNTWQTLITEEGLLTVKKMLGQTATRSTAVSCHWIRSRSRSQLLWVVGNKKKFNVEGVVPVNQTGKEVFMDVLTDKPKQGVLYANTQLQPLSEHLFAVGYVAERLHCQLFPDNTQFSIVNFIAGCLHDLGKIDPKFQEWVTNPKKKEYIADDGQHIDDAKFSFDKHPRHNEISLLLYQLLDSAELKCLNPSNKRSVKHAVYWHHAKPFRKEKNGFDSYKDICKKLVVNQKEVKLVDIVVQAQALIKQIVAIDKKYRESTNSVLERSILADELQELEENLPDAPPLPSYKEYELEESVSANTFNVKVNALNNVARACLITADRIISALSATELHAAIFERNLNELVAGLLEVESSLSSDIATCLRTFYPDSERSKKQSEIAQQLANADDISVLAGAAGCGKTKIALEWAKLKGAKRIIWVCPRVQVCQGLFYELTSEQYLPNSTIEINTGEFKFHNQWDNPITDDESFSGDIVITTIDQILGSVISHTKANTLIDFLNVHVVFDEFHEYVNMPAFNLLFAELIAAKKMQQQQAKTLLVSATPHYVFVEELLGIHPDDIKVMPSFNHSQYQLDFKVFNDSELGADNPLFTEQKDGTFVISNMALTAQNSFIRNQHRENAVLLHSKFIKSDKRKWFGEVYEAFKRGGTRKFEVLRSGPIVQASLNISCDYMVAEITSAEDSLQRLGRLDRFGENKVVNTYTLAVPESIANSKGKSPAAGFLSKMYVLSSVRAWYQFLRSELDDKTFTLPEAYQLYFTFHHTERNRSFIESDLVAALKNSVQQINVKVVDPITMPPKKNKDKKRSKISKGSLRGDNRFVQMALVDLSNSEPNFLDQYAYSIPLDDDSNIDNLTYATSAICGYGQSDKDLLSHMFKKHHNIMGGFNKSFTDKILLNQARDPESPIYLSYTSNDLLQVGGESARHSHAIYYAVCDKQAIGAISIKQINQTTENEE
>NZ_CP046822.1|WP_158138516.1|1773848_1774838_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDLSPSDLKTILHSKRANMYYLEYCRVMQKDGRVLYLTEADKENLYFNIPIANTTVLMLGNGTSITQAAMRMLSQAGVLVGFCGGGGTPLHMACEVEWFTPQSEYRPTEYLQGWLSFWFDDQKRLAAAKQFQNARIDYLQRVWRSDRELTLEKFNVQDEVIKQSLETFHQRTDAASKQSDLLLTEAQLTKTLYKYAANNTGKDGFTRQHQPDKKSTDKANDFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDAIVLPWAFVCAKENATEQEFRQQILQSFIEHKALDFMFDTVKQVALQGKEEEESEDGSL
>NZ_CP046822.1|WP_158138517.1|1775167_1776775_+|GHKL-domain-containing-protein
MKLKSYLALTTIATTSSIVIVVTCAIFFLLQNSYTEGLKARGLELARVIANDPAVIEAVNAQNTSPTRSSIADYMEHIRAQTDASYIVVVDKKAMRLSHPDPTRVGQRFIGEDIYPALIQGAEYSSIHSGTLGKAIRNFSPIYWQDEVIGAVSIGYLSEKTSDILLAQYGHLGGLIAVVYLLGIGISSAFVFKMKRTFLDYEPEFIIHKFREHEMVLDSIRDAIIAVDNNMNITTINNSAMQKLSMGVCNRYDYLNQPLSRYSTPLSHLVLAKPSQLHQGEFSIGQLNYKVDIYPIASPKGVKGQVIVFFPNLEQNELEREVVYLKNYAQLLRSKTHEYSNKLNVLSGLLQSQKHHEAIEFIQQETDRYQSIIHNIVFSVNDSVIAGLLLAKFNKASEIGVKFIIDEDTHLSSYPKNLSEKFVTILGNLIDNALLAAWQNRASCCPLVHIYLSDRSHHIIFEVQDSGAGVSEQITEHILEFGVSTKLDHEQSGVGLYLVKQWVDNFNGSIDWERTDENTTLFSIYLDKNKVINYE
>NZ_CP046822.1|WP_158139046.1|1776785_1777448_+|response-regulator
MLLEDDPRASYMLESAINQHPDFIVVAASESCADALLQYTTFKPQLIFVDISLPDGNGIEVIRQLRDQQAACDFIMTTAERETATVQKAIQLGVTDYLVKPLRMSRIHQALDDYKHYTAKLARTATVDQGDIDDILGKSVTKPLRQTPKGIDATTLASLKALLQQPHLAEFSADDIGEQMNVSRITARRYLEFLESEGMVRLALNYKTGGRPRRLYHLVN
>NZ_CP046822.1|WP_004395169.1|1777539_1778865_-|anaerobic-C4-dicarboxylate-transporter
MFYLHMLLLFAVIFTGIRYGGIAFGLLGGLGVSVLAFVFGVAPGTPPIGVMLIILAVVSASATLEATGGLKLLVKYAEKMLRKHPNHIVYLGPLCTYSLTVLVGTGHSVYPLLPVIYDVAYKKGIRPERPMAIASVASQMGITASPIAAAAAVFMATAADNNLDIGLHNVLMVTIPATLIGLLVACTWSLNRGKDLDKDPEFQARCQDEEFRNGLIDPEAEVVEGSSEDKKAKTGLLVFMLGIASVIFVAMFGKELGLLPNGVNMSVAIQFLMLSVGAIILLTTNIQPSKIVNSHVFIAGMTAVIIIFGIAWLSDTIISYHKTFLIDMVRDVVNHHPWTFAIAMFAVSIFLKSQAAVLTIMLPLGFSLGIPPEVIIGVLPACYAYFFFPFYPSDLAAISFDRSGTTRIGKYVLNHSFLIPGFIGVSTATVVGYFLSMALNG
>NZ_CP046822.1|WP_158138518.1|1779101_1780385_-|citrate:sodium-symporter
MLANNVNSQKDKRMINIIFALSAAVILFSTLSNNLPTGIIGAIGVMVVVGYILNLIGDKTPIINQFFGGGAIVVIFGSSYLFHSGIMPHETTETVTTFVKGGGFLSFFIASLVTGSILGMDTQVLKKAALKYIPVILGGVACAFLFAGLVGSLLGEGFFSSVMLIALPIMGGGMGAGAVPLVEIMSGNTGMSAEMLLSKMVPALAIGNAMAIVIAGLLDKLGKVYPSLTGNGQLIRGNAEQPAASENESPISINVLGIGALLAITMYFVGTMLSDVISMHPYALMILFVALVKVMGLIPRELEKAAHGWYKFVVDNLTPALLVGIGVAYTDLNQILASLTMVYFLMVLATVLGAVVGAALIGRLIGFHPIEAAITAGLCMANMGGTGDVAVLAASKRMELMPFAQISSRIGGALMLIMATFIIELLK
>NZ_CP046822.1|WP_158138519.1|1780578_1781649_-|alanine/ornithine-racemase-family-PLP-dependent-enzyme
MNYPRLEINCTKIIHNTQYLMAELHLKAISVTPVTKASSGHPLLAQLFIHAGATMLADSRVENMQRMRCSGISIPLMLIRTPMLSQIAGVISDCSISLNTEIEVIQALSDEAQRTNSDHSVIIMVELGDLREGVMAKDLVDFIRRIVLLPNIIIKGIGANLACRYGIAPDEQKMAVLSALADEIEGTFDIHLDIISGGNSASLQWALAHTGETRINHLRIGEAIFFGYESLYQETLAGLQTDAMILTAEVIESNLKPSLPWGKRGNNAFGEQQPIEDRGFVTQAILAIGRQDVDVSGLTPPQGITIVSSTSDHLIVETLGEKLLVGQKISFSLNYSGFLSAMSSQHVYKLFSYPHG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP046822_2	2.1\|1767956\|32\|NZ_CP046822\|PILER-CR,CRISPRCasFinder,CRT	1767956-1767987	32	NZ_CP021170	Paenibacillus bovis strain BD3526 plasmid unnamed1, complete sequence	66743-66774	6	0.812
NZ_CP046822_2	2.1\|1767956\|32\|NZ_CP046822\|PILER-CR,CRISPRCasFinder,CRT	1767956-1767987	32	MF001367	Staphylococcus phage SA4, partial genome	205-236	7	0.781
NZ_CP046822_2	2.1\|1767956\|32\|NZ_CP046822\|PILER-CR,CRISPRCasFinder,CRT	1767956-1767987	32	AB626963	Staphylococcus phage S13' DNA, complete genome	2338-2369	7	0.781
NZ_CP046822_2	2.1\|1767956\|32\|NZ_CP046822\|PILER-CR,CRISPRCasFinder,CRT	1767956-1767987	32	NZ_CP009939	Bacillus cereus strain 03BB87 plasmid pBCN, complete sequence	5229-5260	7	0.781
NZ_CP046822_2	2.1\|1767956\|32\|NZ_CP046822\|PILER-CR,CRISPRCasFinder,CRT	1767956-1767987	32	NZ_CP009589	Bacillus cereus G9241 plasmid pBFH_1, complete sequence	43196-43227	7	0.781
NZ_CP046822_2	2.5\|1768196\|32\|NZ_CP046822\|PILER-CR,CRISPRCasFinder,CRT	1768196-1768227	32	NC_028782	Bacillus phage Pavlov, complete genome	20962-20993	8	0.75
NZ_CP046822_2	2.5\|1768196\|32\|NZ_CP046822\|PILER-CR,CRISPRCasFinder,CRT	1768196-1768227	32	NC_022770	Bacillus phage Pony, complete genome	20996-21027	8	0.75
NZ_CP046822_2	2.5\|1768196\|32\|NZ_CP046822\|PILER-CR,CRISPRCasFinder,CRT	1768196-1768227	32	KM236248	Bacillus phage Pookie, complete genome	21051-21082	8	0.75
NZ_CP046822_2	2.5\|1768196\|32\|NZ_CP046822\|PILER-CR,CRISPRCasFinder,CRT	1768196-1768227	32	KF669655	Bacillus phage Page, complete genome	20942-20973	8	0.75
NZ_CP046822_2	2.5\|1768196\|32\|NZ_CP046822\|PILER-CR,CRISPRCasFinder,CRT	1768196-1768227	32	KF669657	Bacillus phage poppyseed, complete genome	20942-20973	8	0.75

1. spacer 2.1|1767956|32|NZ_CP046822|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021170 (Paenibacillus bovis strain BD3526 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-tgttttttcctgctcttttcttagttcaatta	CRISPR spacer
atgtaaatt-ctgctctttttttagtttaatta	Protospacer
 ***   ** **********.******.*****

2. spacer 2.1|1767956|32|NZ_CP046822|PILER-CR,CRISPRCasFinder,CRT matches to MF001367 (Staphylococcus phage SA4, partial genome) position: , mismatch: 7, identity: 0.781

tgttttttcctgctcttttcttagttcaatta	CRISPR spacer
ttctttttcctgctcttttcttgcttctcttt	Protospacer
* .*******************. ***  **

3. spacer 2.1|1767956|32|NZ_CP046822|PILER-CR,CRISPRCasFinder,CRT matches to AB626963 (Staphylococcus phage S13' DNA, complete genome) position: , mismatch: 7, identity: 0.781

tgttttttcctgctcttttcttagttcaatta	CRISPR spacer
ttctttttcctgctcttttcttgcttctcttt	Protospacer
* .*******************. ***  **

4. spacer 2.1|1767956|32|NZ_CP046822|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009939 (Bacillus cereus strain 03BB87 plasmid pBCN, complete sequence) position: , mismatch: 7, identity: 0.781

tgttttttcctgctcttttcttagtt--caatta	CRISPR spacer
acgttttttctgctgttttcttagttaacaat--	Protospacer
   *****.***** ***********  ****

5. spacer 2.1|1767956|32|NZ_CP046822|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009589 (Bacillus cereus G9241 plasmid pBFH_1, complete sequence) position: , mismatch: 7, identity: 0.781

tgttttttcctgctcttttcttagtt--caatta	CRISPR spacer
acgttttttctgctgttttcttagttaacaat--	Protospacer
   *****.***** ***********  ****

6. spacer 2.5|1768196|32|NZ_CP046822|PILER-CR,CRISPRCasFinder,CRT matches to NC_028782 (Bacillus phage Pavlov, complete genome) position: , mismatch: 8, identity: 0.75

gagatggtggatggcatttacgagagtgacga	CRISPR spacer
cagatggtggagggcatttactagggcgcggc	Protospacer
 ********** ********* **.*.*  *

7. spacer 2.5|1768196|32|NZ_CP046822|PILER-CR,CRISPRCasFinder,CRT matches to NC_022770 (Bacillus phage Pony, complete genome) position: , mismatch: 8, identity: 0.75

gagatggtggatggcatttacgagagtgacga	CRISPR spacer
cagatggtggagggcatttactagggcgcggc	Protospacer
 ********** ********* **.*.*  *

8. spacer 2.5|1768196|32|NZ_CP046822|PILER-CR,CRISPRCasFinder,CRT matches to KM236248 (Bacillus phage Pookie, complete genome) position: , mismatch: 8, identity: 0.75

gagatggtggatggcatttacgagagtgacga	CRISPR spacer
cagatggtggagggcatttactagggcgcggc	Protospacer
 ********** ********* **.*.*  *

9. spacer 2.5|1768196|32|NZ_CP046822|PILER-CR,CRISPRCasFinder,CRT matches to KF669655 (Bacillus phage Page, complete genome) position: , mismatch: 8, identity: 0.75

gagatggtggatggcatttacgagagtgacga	CRISPR spacer
cagatggtggagggcatttactagggcgcggc	Protospacer
 ********** ********* **.*.*  *

10. spacer 2.5|1768196|32|NZ_CP046822|PILER-CR,CRISPRCasFinder,CRT matches to KF669657 (Bacillus phage poppyseed, complete genome) position: , mismatch: 8, identity: 0.75

gagatggtggatggcatttacgagagtgacga	CRISPR spacer
cagatggtggagggcatttactagggcgcggc	Protospacer
 ********** ********* **.*.*  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

685048 : 737004

Bacillus_phage(33.33%)

protease,tRNA,integrase,transposase

attL 718607:718625|attR 738678:738696

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154169244.1\|685048_685768_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_154169242.1\|685959_686880_+	glutaminase B	NA	NA	NA	NA
WP_154169240.1\|686936_688106_-	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_158137781.1\|688099_688705_-	XTP/dITP diphosphatase	A0A2H4V8Y9	Ugandan_cassava_brown_streak_virus	3.8e-13	30.8
WP_004396060.1\|688797_689091_-	YggU family protein	NA	NA	NA	NA
WP_040904707.1\|689090_689648_-	YggT family protein	NA	NA	NA	NA
WP_004396058.1\|689700_690519_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_154169238.1\|690601_691318_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_154169236.1\|691344_692382_+	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA
WP_154169234.1\|692392_693499_+	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA
WP_004396054.1\|693501_693927_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_040904706.1\|693987_694551_-	YqgE/AlgH family protein	NA	NA	NA	NA
WP_158137782.1\|694590_695547_-	glutathione synthase	NA	NA	NA	NA
WP_154169232.1\|695561_696293_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_158139010.1\|696593_697289_-	deoxyribonuclease I	NA	NA	NA	NA
WP_158137784.1\|697392_697881_-\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_154169230.1\|697974_699129_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.6e-124	60.5
WP_154169228.1\|699573_701568_+	transketolase	NA	NA	NA	NA
WP_154169226.1\|701642_702545_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_158137786.1\|702687_704643_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	3.1e-11	33.3
WP_154170701.1\|704769_705795_+	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA
WP_158137788.1\|705942_707106_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_004396043.1\|707258_708335_+	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_154169222.1\|708549_709413_+	small-conductance mechanosensitive channel MscS	NA	NA	NA	NA
WP_154169220.1\|709490_710120_-	LysE family transporter	NA	NA	NA	NA
WP_158137790.1\|710240_711137_+	ArgP/LysG family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_158137792.1\|711277_711976_+	oxidative stress defense protein	NA	NA	NA	NA
WP_158137794.1\|712103_713945_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.2e-17	33.7
WP_004396037.1\|714051_715464_-	pyruvate kinase PykF	NA	NA	NA	NA
WP_040904702.1\|715893_716655_+	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_154169213.1\|716738_718571_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7J689	Paramecium_bursaria_Chlorella_virus	4.6e-126	43.6
718607:718625	attL	NA	NA	NA	NA
WP_107947007.1\|718825_719785_-\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.4e-54	39.6
WP_158137123.1\|720263_721386_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.9e-26	31.8
WP_016898901.1\|721701_722391_+	VIT family protein	NA	NA	NA	NA
WP_058799734.1\|722519_723866_-	group II intron reverse transcriptase/maturase	A0A0N7ACI1	Bacillus_phage	1.5e-17	26.3
WP_158139011.1\|725397_726990_+	phosphoethanolamine--lipid A transferase	NA	NA	NA	NA
WP_158137796.1\|727013_727388_+	diacylglycerol kinase	NA	NA	NA	NA
WP_158137798.1\|728677_729352_+	response regulator	W8CYM9	Bacillus_phage	6.4e-25	32.6
WP_158137799.1\|729351_730611_+	sensor histidine kinase	NA	NA	NA	NA
WP_158137801.1\|730920_731751_+\|transposase	heteromeric transposase endonuclease subunit TnsA	NA	NA	NA	NA
WP_158137803.1\|731734_733825_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_158137804.1\|733821_735459_+	AAA family ATPase	NA	NA	NA	NA
WP_158137806.1\|735459_737004_+\|transposase	transposase	NA	NA	NA	NA
738678:738696	attR	NA	NA	NA	NA

DBSCAN-SWA_2

767801 : 774902

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154169165.1\|767801_768557_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.2e-65	51.6
WP_004395999.1\|768560_769187_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.7e-35	50.9
WP_158137827.1\|769186_770155_+	murein hydrolase activator NlpD	Q8SBN9	Clostridium_phage	1.2e-11	35.5
WP_154169163.1\|770227_771205_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	2.6e-35	35.3
WP_158137829.1\|771267_773850_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	4.2e-32	23.6
WP_158137831.1\|774011_774902_-	cysteine synthase CysM	C3U2M1	Lactococcus_phage	1.7e-49	39.1

DBSCAN-SWA_3

2069110 : 2117526

Vibrio_phage(88.33%)

protease,transposase,portal,integrase,lysis,head,terminase,tail,capsid

attL 2068393:2068442|attR 2117656:2117705

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2068393:2068442	attL	NA	NA	NA	NA
WP_158138641.1\|2069110_2070046_-	hypothetical protein	A0A1V0E875	Vibrio_phage	3.6e-10	40.2
WP_158138642.1\|2070038_2070194_-	hypothetical protein	A0A1V0E896	Vibrio_phage	3.7e-13	68.5
WP_158138643.1\|2070235_2071339_-	hypothetical protein	A0A1V0E897	Vibrio_phage	5.2e-125	59.0
WP_158138644.1\|2071335_2074866_-	DUF1983 domain-containing protein	A0A1V0E886	Vibrio_phage	0.0e+00	78.8
WP_158138645.1\|2074884_2075490_-\|tail	tail assembly protein	A0A1V0E8A0	Vibrio_phage	4.3e-73	71.6
WP_158138646.1\|2075633_2076518_+\|transposase	transposase	A0A0R6PHP9	Moraxella_phage	5.2e-51	41.6
WP_158138647.1\|2076526_2077042_+	hypothetical protein	NA	NA	NA	NA
WP_158138648.1\|2077071_2077803_-	peptidase P60	A0A1V1FD38	Vibrio_phage	1.3e-108	71.5
WP_158138649.1\|2077805_2078552_-\|tail	phage minor tail protein L	A0A1V1FDP3	Vibrio_phage	1.1e-123	83.5
WP_158138650.1\|2078562_2078901_-\|tail	phage tail protein	A0A1V1FDP8	Vibrio_phage	5.8e-51	83.0
WP_158138651.1\|2078904_2081760_-\|tail	phage tail tape measure protein	A0A1V0E8B0	Vibrio_phage	6.8e-286	60.1
WP_158138652.1\|2081802_2081964_-	hypothetical protein	A0A1V0E8A9	Vibrio_phage	3.6e-11	64.2
WP_158138653.1\|2082056_2082500_-	hypothetical protein	A0A1V0E823	Vibrio_phage	1.8e-60	81.0
WP_158138654.1\|2082510_2082987_-\|tail	phage tail protein	A0A1V0E8B3	Vibrio_phage	8.3e-80	91.8
WP_158138655.1\|2083092_2083461_-	DUF3168 domain-containing protein	A0A1V0E8A7	Vibrio_phage	4.6e-54	78.7
WP_158138656.1\|2083457_2083922_-	hypothetical protein	A0A1V0E895	Vibrio_phage	5.5e-60	75.7
WP_158138657.1\|2083951_2084314_-\|head,tail	head-tail adaptor protein	A0A1V0E8B6	Vibrio_phage	1.9e-39	63.6
WP_158138658.1\|2084313_2084607_-\|head,tail	phage gp6-like head-tail connector protein	A0A1V0E887	Vibrio_phage	6.1e-33	66.7
WP_158138659.1\|2084624_2084891_-	hypothetical protein	A0A1V0E889	Vibrio_phage	4.4e-06	58.0
WP_158138660.1\|2084962_2086150_-\|capsid	phage major capsid protein	A0A1V0E898	Vibrio_phage	2.1e-156	81.0
WP_158138661.1\|2086154_2087027_-\|protease	Clp protease ClpP	A0A1V0E8B8	Vibrio_phage	1.7e-134	82.8
WP_158138662.1\|2087029_2088337_-\|portal	phage portal protein	A0A1V0E8B9	Vibrio_phage	3.0e-212	83.0
WP_158138663.1\|2088533_2090252_-\|terminase	terminase large subunit	A0A1V0E8C2	Vibrio_phage	0.0e+00	91.6
WP_158138664.1\|2090248_2090722_-\|terminase	phage terminase small subunit P27 family	A0A1V0E8B7	Vibrio_phage	8.0e-75	84.7
WP_158138665.1\|2090727_2091087_-	HNH endonuclease	A0A1V0E8A5	Vibrio_phage	1.1e-47	75.6
WP_158138666.1\|2091086_2091419_-	hypothetical protein	A0A1V0E8K3	Vibrio_phage	3.1e-25	61.7
WP_158138667.1\|2091694_2091898_-	hypothetical protein	A0A1V0E8A4	Vibrio_phage	1.3e-10	48.6
WP_158138668.1\|2092443_2092686_-	hypothetical protein	A0A2I7QYY5	Vibrio_phage	5.8e-21	62.5
WP_072669746.1\|2092692_2093187_-\|lysis	lysis protein	A0A1V1FD30	Vibrio_phage	2.0e-20	40.7
WP_158138669.1\|2093200_2093680_-	glycoside hydrolase family protein	A0A1U9GSH3	Vibrio_phage	1.6e-70	81.6
WP_072669748.1\|2093672_2093858_-	hypothetical protein	A0A1V1FD92	Vibrio_phage	1.5e-13	60.7
WP_158138670.1\|2093988_2094657_-	hypothetical protein	A0A1U9GXP4	Vibrio_phage	2.6e-87	73.5
WP_158138671.1\|2094856_2095219_+	helix-turn-helix domain-containing protein	L7TKV7	Pseudomonas_virus	6.0e-22	50.9
WP_158138672.1\|2095222_2095690_+	toxin	NA	NA	NA	NA
WP_158138673.1\|2096196_2096700_+	hypothetical protein	NA	NA	NA	NA
WP_158138674.1\|2096776_2097787_-	DUF968 domain-containing protein	A0A1U9GXE8	Vibrio_phage	7.5e-155	74.4
WP_158139052.1\|2097780_2098038_-	DUF4406 domain-containing protein	A0A1U9GY09	Vibrio_phage	1.3e-39	82.4
WP_158138675.1\|2098074_2098326_-	hypothetical protein	A0A1V0E827	Vibrio_phage	2.8e-18	57.3
WP_158138676.1\|2098322_2098826_-	hypothetical protein	A0A1V0E852	Vibrio_phage	1.7e-59	71.9
WP_158138677.1\|2098818_2099145_-	hypothetical protein	NA	NA	NA	NA
WP_158138678.1\|2099144_2099351_-	hypothetical protein	NA	NA	NA	NA
WP_158138679.1\|2099526_2100243_-	DNA-binding protein	A0A1V1FD44	Vibrio_phage	2.4e-107	84.8
WP_158138680.1\|2100417_2101110_-	hypothetical protein	B5WZY0	Pseudomonas_phage	2.9e-25	33.5
WP_158138681.1\|2101093_2101924_-	hypothetical protein	A0A1V0E831	Vibrio_phage	5.7e-84	70.2
WP_158138682.1\|2101920_2102205_-	hypothetical protein	A0A1V0E8C9	Vibrio_phage	3.6e-22	57.1
WP_158138683.1\|2102205_2102844_-	hypothetical protein	A0A067ZG73	Vibrio_phage	6.4e-59	50.7
WP_158138684.1\|2102983_2103229_-	hypothetical protein	A0A1V0E8D3	Vibrio_phage	6.1e-26	73.8
WP_158138685.1\|2103231_2103684_-	hypothetical protein	R9TRN6	Vibrio_phage	1.5e-41	65.4
WP_158138686.1\|2103975_2104761_+	helix-turn-helix domain-containing protein	R9TNM0	Vibrio_phage	1.5e-86	69.8
WP_158138687.1\|2104793_2105348_+	outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	8.7e-20	35.1
WP_158138688.1\|2106536_2106986_+	hypothetical protein	NA	NA	NA	NA
WP_158138689.1\|2107694_2108090_+	hypothetical protein	R9TMP0	Vibrio_phage	1.1e-56	84.7
WP_158138690.1\|2108150_2108975_+	DUF2303 family protein	R9TRN9	Vibrio_phage	8.7e-101	65.6
WP_158138691.1\|2109038_2109770_+	hypothetical protein	A0A1V0E8E0	Vibrio_phage	2.4e-17	35.7
WP_158139053.1\|2109784_2109994_+	hypothetical protein	A0A1V0E8D5	Vibrio_phage	3.2e-20	68.1
WP_158138692.1\|2110011_2110227_+	hypothetical protein	NA	NA	NA	NA
WP_158138693.1\|2110323_2110902_+	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	3.6e-37	43.8
WP_158138694.1\|2110901_2111162_+	hypothetical protein	A0A1V0E8E7	Vibrio_phage	3.3e-14	53.1
WP_158138695.1\|2111170_2111527_+	hypothetical protein	I3PV00	Vibrio_phage	1.6e-30	60.4
WP_158138696.1\|2111564_2111798_+	hypothetical protein	A0A1V0E8D1	Vibrio_phage	2.0e-10	54.5
WP_158138697.1\|2111797_2112592_+	HNH endonuclease	A0A1S5SAF6	Streptococcus_phage	1.2e-35	38.4
WP_158138698.1\|2112566_2113244_+	hypothetical protein	I7KQS5	Yersinia_phage	1.9e-08	48.5
WP_158138699.1\|2113253_2113523_+	hypothetical protein	NA	NA	NA	NA
WP_158138700.1\|2113552_2113990_+	hypothetical protein	NA	NA	NA	NA
WP_158138701.1\|2113986_2114424_+	hypothetical protein	A0A1V0E8D7	Vibrio_phage	1.0e-55	68.8
WP_158138702.1\|2114413_2115055_+	hypothetical protein	A0A1V0E8E6	Vibrio_phage	2.6e-92	71.6
WP_158138703.1\|2115226_2115478_+	hypothetical protein	A0A1V0E8C3	Vibrio_phage	6.2e-18	60.3
WP_158138704.1\|2115484_2115694_+	hypothetical protein	NA	NA	NA	NA
WP_158138705.1\|2115665_2116076_+	hypothetical protein	A0A1V0E8F5	Vibrio_phage	1.5e-21	66.7
WP_158138706.1\|2116136_2116346_+	hypothetical protein	NA	NA	NA	NA
WP_158138707.1\|2116347_2117526_+\|integrase	site-specific integrase	A0A2H4J1K3	uncultured_Caudovirales_phage	7.7e-34	31.0
2117656:2117705	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2440380 : 2446931

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004394649.1\|2440380_2440851_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.1e-31	48.0
WP_004394648.1\|2440990_2442100_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.2e-60	38.4
WP_158138814.1\|2442140_2442797_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	4.2e-29	36.1
WP_158139062.1\|2442808_2443915_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	8.2e-46	37.4
WP_115152664.1\|2443929_2444379_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_158138815.1\|2444535_2445786_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.9e-100	48.7
WP_154170327.1\|2445797_2446931_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	7.3e-66	43.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP046821

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046821_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046821_1

20079-20162

Orphan

I-F

Consensus_repeat	Method
TAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046821_1

>merge|NZ_CP046821|1|20079-20162|CRISPRCasFinder
TAAGCTGCCTGTGCGGCAGTGAACGCGATGTCGTGTATCCGCTCTATGCGCTGAACTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP046821|1|1|20079-20162|CRISPRCasFinder
TAAGCTGCCTGTGCGGCAGTGAAC	GCGATGTCGTGTATCCGCTCTATGCGCTGAACTTTC
TAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046821.1\|WP_158137026.1\|19626_19902_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP046821.1\|WP_000253535.1\|17215_17641_-\|DUF3465-domain-containing-protein	unknown	unknown	gnl\|CDD\|314772
NZ_CP046821.1\|WP_158137029.1\|22963_23254_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_158137025.1\|19012_19483_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP046821.1\|WP_154171044.1\|23457_23742_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_158137028.1\|21650_22190_-\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238494
NZ_CP046821.1\|WP_158137030.1\|23892_24498_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_094165685.1\|18215_18326_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NZ_CP046821.1\|WP_158137021.1\|14318_15098_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379142
NZ_CP046821.1\|WP_004397275.1\|25747_25978_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|312534
NZ_CP046821.1\|WP_154116399.1\|22332_22764_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_004397191.1\|15698_16022_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_158137022.1\|15126_15240_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NZ_CP046821.1\|WP_094144350.1\|25093_25210_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NZ_CP046821.1\|WP_158137023.1\|15324_15561_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_000443644.1\|17764_18175_-\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|236225
NZ_CP046821.1\|WP_158137031.1\|26158_26812_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369778
NZ_CP046821.1\|WP_158137024.1\|16157_17069_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_158137027.1\|20448_21420_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373949
NZ_CP046821.1\|WP_154171037.1\|24660_25062_-\|DUF2007-domain-containing-protein	unknown	unknown	gnl\|CDD\|378182

Protein	Function_ID	Function_description	E-value
NZ_CP046821.1\|WP_158137026.1\|19626_19902_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	1.58132e-07
NZ_CP046821.1\|WP_000253535.1\|17215_17641_-\|DUF3465-domain-containing-protein	gnl\|CDD\|314772	pfam11948, DUF3465, Protein of unknown function (DUF3465). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.	2.39558e-72
NZ_CP046821.1\|WP_158137025.1\|19012_19483_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.45957e-11
NZ_CP046821.1\|WP_004397275.1\|25747_25978_+\|serine/threonine-protein-kinase	gnl\|CDD\|312534	pfam09016, Pas_Saposin, Pas factor saposin fold. Members of this family adopt a compact structure comprising five alpha helices. Charged and polar residues are exposed mostly on the surface, while most of the hydrophobic residues are buried inside the hydrophobic core of the helical bundle. The precise function of this domain is unknown, but it is has been shown to induce secretion of periplasmic proteins, especially collagenase.	8.62664e-37
NZ_CP046821.1\|WP_158137028.1\|21650_22190_-\|isochorismatase-family-protein	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	3.35926e-57
NZ_CP046821.1\|WP_094165685.1\|18215_18326_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	2.12152e-05
NZ_CP046821.1\|WP_158137021.1\|14318_15098_-\|hypothetical-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	0.000326147
NZ_CP046821.1\|WP_158137022.1\|15126_15240_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	0.0019542
NZ_CP046821.1\|WP_094144350.1\|25093_25210_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	0.000118296
NZ_CP046821.1\|WP_000443644.1\|17764_18175_-\|cytidine-deaminase	gnl\|CDD\|236225	PRK08298, PRK08298, cytidine deaminase; Validated.	4.6548e-63
NZ_CP046821.1\|WP_158137031.1\|26158_26812_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|369778	pfam08242, Methyltransf_12, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.71657e-08
NZ_CP046821.1\|WP_158137027.1\|20448_21420_-\|hypothetical-protein	gnl\|CDD\|373949	pfam15575, Imm49, Immunity protein 49. A predicted immunity protein with an all alpha-helical fold and a conserved proline residue. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a domain of the Tox-REAse-1 or Tox-REase-6 families.	8.3357e-19
NZ_CP046821.1\|WP_154171037.1\|24660_25062_-\|DUF2007-domain-containing-protein	gnl\|CDD\|378182	pfam09413, DUF2007, Putative prokaryotic signal transducing protein. This is a family of putative prokaryotic signal transducing proteins of Pii-type.	1.09652e-11

>NZ_CP046821.1|WP_158137026.1|19626_19902_-|antibiotic-biosynthesis-monooxygenase
MSKVTLKGFILVPESELEVVKIELENHKRLTLEEPGCITFKVTENSENPSRFDVYEEFIDKSAFEYHQNRVKTSHWGKVTVNVERHYEILE
>NZ_CP046821.1|WP_158137025.1|19012_19483_-|GNAT-family-N-acetyltransferase
MEISLLADHPHEAPKIAKWYYDEWARLAPNVTEEIVLEKVIEKSVNREEIPLSLVAHLDGELVGVLELKIRENRNYPEYENWIGGVFTHPRHRRKGIAQILLASAKEKAASIGIKKLYLQCESFNVELYLNHDFKVLHQAPHHEIETTIMVWEATT
>NZ_CP046821.1|WP_094165685.1|18215_18326_-|DUF3265-domain-containing-protein
MTNASRGTSNAWHFYYALVFVVTVLCGNLVVALSAP
>NZ_CP046821.1|WP_000443644.1|17764_18175_-|cytidine-deaminase
MESIEKDLYDAAAQLIEKRYPTGWGGAAAVRTQSGKILTSVAPDVKNDALSLCMEVGAYLEAHKLNEVVTHSLCICREDEHGEFLVLSPCGICQERLVHWGGDVKAAISTEKNELVFKTLRELMPHHWSLVNGKAL
>NZ_CP046821.1|WP_000253535.1|17215_17641_-|DUF3465-domain-containing-protein
MVSGLNKDSFMKWFLAFWLVLTSCFSVSLYANDAVLQQAYQSQQSDLQVQGLGQVVKVLPDDNDGSRHQKFILKLNSGQTLLVAHNIDLAPRIPNLKVGDSVEFYGEYEWNKKGGVLHWTHKDPQNRHAHGWLKHNGQVYE
>NZ_CP046821.1|WP_158137024.1|16157_17069_-|hypothetical-protein
MHIYLDQNIWIDLAKIHHGKDNRPESVRLLSLIQKKLESGDIVLPLSRIHYIETSTIANAGRRERLGRVMFDYSKGVTLAPYKSIVVYELDCALSKIFSHVKPRNFKLFGNGIKHAYGDVLEFKYPTMMDPNWIERAALTGEEIVGHRFGGFHKTEHNGKFQEHLRKVSEMRQTVPRKEWDNTLYAIALADIVEPLSEVLNYWKIPFDDFIGLGTDTLTSFIDSMPSRTLEVHMHRQVLNNPNYNPKPTDLEDWGGVALASQYCDAIVGEKHLYDMLLRNRFKTKAAVFRRLSDLEQYLEKAI
>NZ_CP046821.1|WP_004397191.1|15698_16022_-|hypothetical-protein
MYSFKADSGWNFETELRCLIIYKTLAELEFPRGLQSDLCSVLSESTGLKFESVKAKVGNYKSEFGVTNPSNSSEATKYLVKNFGHMSLQELDALLTGYLLGKGEERT
>NZ_CP046821.1|WP_158137023.1|15324_15561_-|hypothetical-protein
MSQLVSEVCHCSQCHADTNHVVVLVRKESPFKDQPNSKLKEFWHGAIKGWFLGAFVAAMDDFSRHRVCEACGHKEIED
>NZ_CP046821.1|WP_158137022.1|15126_15240_-|DUF3265-domain-containing-protein
MLTNGSRGTTNAWHFYCALVFVVTVLCGNLVVALVAP
>NZ_CP046821.1|WP_158137021.1|14318_15098_-|hypothetical-protein
MAVLPKGCLAFPVLITLGNGGLGTGVFVINGQDVFLVTAKHVIFDNANVLQSVTANLKSYTEDQLPHDYWSFNLDLNQLIQTGNLRYNIYKDVCVIRTHFSNQLVLGVTQTRVASKALVGVLLGVSTKSISSVGVSNDVFIFGYPASIGIKSNPYMTQFSMDTPLLRKGIVAGIAHNNNTIILDCPVYKGNSGGPVIELAQDGSWNLIGIVSQFVPVEDTWRNESFGLVNIQWSNSGYSIAEPFDSVQAIINLFYLALP
>NZ_CP046821.1|WP_158137027.1|20448_21420_-|hypothetical-protein
MRTPFRFILSLLGRANSHEATELITGADETKVVSNEPVMKSALKTHIKNLEGKQRVYDATLESFIKTNQFSLSIAEKNCFGFETGYRDLCKLFAIGHYLPSVADSEVVEHFFSAQQYAILWLRQMNQPKGEFIPFQYQGVDFAIPAQGRTEYIQSLDWLDMLYLTIVTGRNEDLNLLIELLHKGQVAWRSEQGRYHLEIVLHMLGLQASCDITDLINRFIAHIQREGQTPKERIPSYHGITVTLGFFDVMQAIHQQDQVAYNLSMHRALDMHKEWWTHDKDFKTDPKGYISLHLLTAAKYAYEKYGYTLDVKSDYIPSYLYQR
>NZ_CP046821.1|WP_158137028.1|21650_22190_-|isochorismatase-family-protein
MLDKENTGLIIVDIQGKLARLVSDSNELVSNCIKLIKGAQLLGLPIVLLEQNPAKLGQTIEELSVLLSNQQPISKFSFDACGEPRFVEVIQKSNKTSWLICGIEAHICVYQTAIHLKNLGYDIHLVGDCVSSRNESNKELAIKKLAGAGVDITGLEMCLYELVKDCRAPEFKEILNLIK
>NZ_CP046821.1|WP_154116399.1|22332_22764_-|hypothetical-protein
MEHKLIYALYSAENTGKTTTLRLLAKKLAEISNFSRSIPESGDFTSIFNVKGMKVAITSAGDDEDGIRSSLEELSEDSDFDILFCASRTKGQTVNYLIERFKDHELRWVDNMYVHCENENQAQLCNEIVADFLFRSLLLELRT
>NZ_CP046821.1|WP_158137029.1|22963_23254_-|hypothetical-protein
MDFIWLLLVLGVAAIFYYFVSYSKPQDDDWHKLPTLESYLIKHPECKTADPESAKCFSCGSDKVIFQPLTAHADPRYKHICLSCKKTLFRSKAIMS
>NZ_CP046821.1|WP_154171044.1|23457_23742_-|hypothetical-protein
MMNVDKAKKRILKRVQRGFKGYPQISLEYFGKTTDFATEVVITFIAEENAEPQIQRFTSDKDVREDESIQSVLLKIIERADAATVLESREVSVC
>NZ_CP046821.1|WP_158137030.1|23892_24498_-|hypothetical-protein
MESLFTGLIGAIVGVIFGHYMTVRLVNKKTSLQEQAFYFELEILLDKYKNDLVHKFDDFNNPVKNRYVIGAPVVDMSLINALSIELAGTDKVLNKEVRTLIIHTTKFAEDLVDTAKKREKFREKFNKADAKNTEEYLKLTKQMLRDEVQLVFYLYKLVKDRNNFRFGGYSNLEMANVACDVAHIAFDTQVWQGICQVVAEA
>NZ_CP046821.1|WP_154171037.1|24660_25062_-|DUF2007-domain-containing-protein
MIVIARFSFPHEAHIAKASLESAGITSFIADEHTVNTQWLYSNAIGGVRLLVAEDDAKEALEILNSDFSESVENEAIPDKLKDVCPNCGSGDLSVHTKGKKPAFLVFILLGFPLFFYKHGYKCNQCGEFSEKL
>NZ_CP046821.1|WP_094144350.1|25093_25210_-|DUF3265-domain-containing-protein
MKYNKQFKQTLNAWHFYYALSLVITVLCGKLVVAFRAT
>NZ_CP046821.1|WP_004397275.1|25747_25978_+|serine/threonine-protein-kinase
MKALIYETLIKLASKDPEQHAQIRQNLYDHLGLPFEKQLTLYSQALGPAGSGKLENEQAMSNAVESVIKLLETPEH
>NZ_CP046821.1|WP_158137031.1|26158_26812_-|methyltransferase-domain-containing-protein
MNKESTFAGQAVYSKKVLSIYDFWVLGVSNNYFWKCPTRFISEQFSMLVSSNHLDVGVGSGYYLRNFLPQSTRRIALLDLNQNSLDATSKAINHFQPEIYCGDVLEPIEIKLDKFDSISVNYLLHCLPGDLADKGIMFKHLKSHLNDGGLLFGSTILGKGTKLNFFAKKLMGVYNKKGIFCNDNDDLESLLSSLNEHFTNVKVEVIGCVALFSGKKI

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Crispr_ID: NZ_CP046821_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046821_2

783523-783790

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT

4 spacers

The CRISPR arrays of NZ_CP046821_2

>merge|NZ_CP046821|2|783523-783790|PILER-CR,CRISPRCasFinder,CRT
TTTTTAAGCTGCCTGTGCGGCAGTGAACTTAATGCTAAAATGCCCTTATCAATCGGATAGTTTCTAAGCTGCCTGTGCGGCAGTGAACTTTTCGGGCATTGATTTTTTGACTGACTCGATTTTCTAAGCTGCCTGTGCGGCAGTGAACCGTCGCAGAATTTTAATCAAGAGAAAAAGTGATTTCTAAGCTGCCTGTGCGGCAGTGAACCAGTAGGTTCCTCTGGCTCCGTTGGGTCAGTCTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP046821|2|1|783523-783790|PILER-CR
TTTTTAAGCTGCCTGTGCGGCAGTGAAC	TTAATGCTAAAATGCCCTTATCAATCGGATAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTTCGGGCATTGATTTTTTGACTGACTCGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGTCGCAGAATTTTAATCAAGAGAAAAAGTGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CAGTAGGTTCCTCTGGCTCCGTTGGGTCAGTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP046821|2|2|783523-783790|CRISPRCasFinder
TTTTTAAGCTGCCTGTGCGGCAGTGAAC	TTAATGCTAAAATGCCCTTATCAATCGGATAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTTCGGGCATTGATTTTTTGACTGACTCGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGTCGCAGAATTTTAATCAAGAGAAAAAGTGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CAGTAGGTTCCTCTGGCTCCGTTGGGTCAGTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP046821|2|1|783523-783790|CRT
TTTTTAAGCTGCCTGTGCGGCAGTGAAC	TTAATGCTAAAATGCCCTTATCAATCGGATAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTTCGGGCATTGATTTTTTGACTGACTCGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGTCGCAGAATTTTAATCAAGAGAAAAAGTGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CAGTAGGTTCCTCTGGCTCCGTTGGGTCAGTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046821.1\|WP_158137385.1\|786256_786595_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_158137382.1\|781869_782565_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379142
NZ_CP046821.1\|WP_004397275.1\|778801_779032_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|312534
NZ_CP046821.1\|WP_094166271.1\|787738_788029_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP046821.1\|WP_094165685.1\|781711_781822_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NZ_CP046821.1\|WP_158137381.1\|781225_781660_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_158137383.1\|782689_783358_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NZ_CP046821.1\|WP_081480741.1\|779625_779736_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NZ_CP046821.1\|WP_001250181.1\|788015_788267_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|225072
NZ_CP046821.1\|WP_158137380.1\|780772_781072_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP046821.1\|WP_158137451.1\|783947_784058_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NZ_CP046821.1\|WP_158137384.1\|784529_785459_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_158137386.1\|788326_788437_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_154170981.1\|786130_786220_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_154171045.1\|784131_784329_-\|DUF1289-domain-containing-protein	unknown	unknown	gnl\|CDD\|377738
NZ_CP046821.1\|WP_094165685.1\|786639_786750_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NZ_CP046821.1\|WP_158137379.1\|780521_780764_+\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	unknown	unknown	gnl\|CDD\|273688
NZ_CP046821.1\|WP_099610012.1\|787264_787561_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|367760
NZ_CP046821.1\|WP_158137450.1\|778067_778457_-\|DUF1090-family-protein	unknown	unknown	gnl\|CDD\|368932
NZ_CP046821.1\|WP_158137378.1\|777444_777918_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181

Protein	Function_ID	Function_description	E-value
NZ_CP046821.1\|WP_099610012.1\|787264_787561_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|367760	pfam03992, ABM, Antibiotic biosynthesis monooxygenase. This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species. It's occurrence as a repeat in Streptomyces coelicolor SCO1909 is suggestive that the other proteins function as multimers. There is also a conserved histidine which is likely to be an active site residue.	5.27104e-06
NZ_CP046821.1\|WP_158137382.1\|781869_782565_-\|hypothetical-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	1.21029e-12
NZ_CP046821.1\|WP_004397275.1\|778801_779032_+\|serine/threonine-protein-kinase	gnl\|CDD\|312534	pfam09016, Pas_Saposin, Pas factor saposin fold. Members of this family adopt a compact structure comprising five alpha helices. Charged and polar residues are exposed mostly on the surface, while most of the hydrophobic residues are buried inside the hydrophobic core of the helical bundle. The precise function of this domain is unknown, but it is has been shown to induce secretion of periplasmic proteins, especially collagenase.	8.62664e-37
NZ_CP046821.1\|WP_094166271.1\|787738_788029_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	2.02079e-22
NZ_CP046821.1\|WP_094165685.1\|781711_781822_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	2.12152e-05
NZ_CP046821.1\|WP_094165685.1\|786639_786750_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	2.12152e-05
NZ_CP046821.1\|WP_158137383.1\|782689_783358_-\|HAD-IA-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	1.13472e-24
NZ_CP046821.1\|WP_081480741.1\|779625_779736_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	1.59603e-05
NZ_CP046821.1\|WP_001250181.1\|788015_788267_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|225072	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	1.48797e-16
NZ_CP046821.1\|WP_158137380.1\|780772_781072_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.36182e-24
NZ_CP046821.1\|WP_158137451.1\|783947_784058_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	0.00360524
NZ_CP046821.1\|WP_154171045.1\|784131_784329_-\|DUF1289-domain-containing-protein	gnl\|CDD\|377738	pfam06945, DUF1289, Protein of unknown function (DUF1289). This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	3.08099e-14
NZ_CP046821.1\|WP_158137379.1\|780521_780764_+\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	gnl\|CDD\|273688	TIGR01552, Hypothetical_protein_Rv3357/MT3465/Mb3392., prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	2.7342e-10
NZ_CP046821.1\|WP_158137450.1\|778067_778457_-\|DUF1090-family-protein	gnl\|CDD\|368932	pfam06476, DUF1090, Protein of unknown function (DUF1090). This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.	3.51656e-26
NZ_CP046821.1\|WP_158137378.1\|777444_777918_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.79646e-08

>NZ_CP046821.1|WP_158137383.1|782689_783358_-|HAD-IA-family-hydrolase
MRMYDTVIFDYGNTLCEMGNLSNSLKVVLESKCAEQIGHSIERSIKELYSPDQVEQPRWIDIWEKSFNEYGLTFEQSIGLEHLNHFVDSGHMYSYSLPLLSSLQKQGTKLILLSNVTGPTEVFQRDLSERGLAKYFDSVIWSSEIGFRKPSRQAFEIALESTGSISSNTIMVGDNEIADVCGAELVGISTMLISDVESIESRANHVVNRTNITRELIRLTRR
>NZ_CP046821.1|WP_158137382.1|781869_782565_-|hypothetical-protein
MKNFTHLYQSFKYSMVRITVRTESGDLSNGSAFHIGDGWLATAAHVVNGGEIEEIVSEYCNENLVVEKIISHSDDRVDLAIIKTNLDLTHYLTKTTIVGSPEGFIQTDHIEIGGHLDDWIGDELVLSKVLLMGYPPIPFSNGPVLLASEGEVNAVVDKYNGPHPHFIISNMGRGGYSGGPVLSEYGFLLGVLTESLVANNQSEELGYSSAISVEPLLVLLQENGVYPGKNK
>NZ_CP046821.1|WP_094165685.1|781711_781822_-|DUF3265-domain-containing-protein
MTNASRGTSNAWHFYYALVFVVTVLCGNLVVALSAP
>NZ_CP046821.1|WP_158137381.1|781225_781660_-|hypothetical-protein
MSITTLFRVILISGLVTSIVGIIAGFSLSETLPPILQEYLLQAEKKEVSNFEMVFLLVASLALLVLLPVSTVGLWKFKRWARTLYIVISIVFIPLSIFVGPIVMNSWEAMFNEIAILLEGILIAMMFMGPISEKFKHVAVIKTS
>NZ_CP046821.1|WP_158137380.1|780772_781072_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MHNKQYRLSSLAQTHLRKVKNYTINNFSELQWQRYKETLLSGFQMLADNPDLGRSCHEIYSNGFYFPIGKHTAYFTKEENFILIVAVLGQSQLPQNHLK
>NZ_CP046821.1|WP_158137379.1|780521_780764_+|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin
MHTLTANDAKRNFGELLLNAQRQPIKISKNSKDAVVVMSIHDYEELEMMKTEYLKHCFNAAKDDLAKGNVIDGKDFLNEL
>NZ_CP046821.1|WP_081480741.1|779625_779736_-|DUF3265-domain-containing-protein
MTNASRGTSNAWHFYYALIFVVTVLCGNLVVALSAP
>NZ_CP046821.1|WP_004397275.1|778801_779032_+|serine/threonine-protein-kinase
MKALIYETLIKLASKDPEQHAQIRQNLYDHLGLPFEKQLTLYSQALGPAGSGKLENEQAMSNAVESVIKLLETPEH
>NZ_CP046821.1|WP_158137450.1|778067_778457_-|DUF1090-family-protein
MLRVSSAILAILSFYSFASLSCSDFSGCERKYCEIELQIKNAQLANNPKKVDGLKIALAEAKSNCSDSKIKQDLAYEIKETKDKISEYNLELQEAKESGKDNKVKKYQSKIQKEERKLESLLQELSELG
>NZ_CP046821.1|WP_158137378.1|777444_777918_-|GNAT-family-N-acetyltransferase
MLIIEKYNKSRDAEVEKLRVKPEQVQFTVDKLGEFILSLKEDEHPHLIIENDQVVGFFVLDLSYSDAYSFSAPKALGVRALLIDHNHQGLGVASRAMNLLPSYVASTYPEFERLQLTVNCRNKAAYNCYLKCGFEDTGNLYLGGQAGPQHIMQRTAA
>NZ_CP046821.1|WP_158137451.1|783947_784058_-|DUF3265-domain-containing-protein
MTNGSRGTTNAWHFYCALVFVVSVLCGNLAVALVAP
>NZ_CP046821.1|WP_154171045.1|784131_784329_-|DUF1289-domain-containing-protein
MVNVNETKSEDPKSPCNRHCSLDENDICLGCFRTLNDILKWQSSTIAERIEILSLCQKRKEHYSR
>NZ_CP046821.1|WP_158137384.1|784529_785459_-|hypothetical-protein
MDWLDVIPSSMSAVASVAAAVAAIASWRVSRRATSIAESTALATHHSAATLVYVQEVKQLNALISDLDKLAFEITSTWSKQLQRFDNPDLGGTDPRPLRHVLYNGYELLADYASDSKKQIGAASSGILSPIRNGMGSITEDEYNKLLKKVDGTPCSFEATLGLPSKSKSITSAPAFRWVYYQLLKRVESQDWRSVWTEAWLEAGYLNQYKSVFVRLKPELIGSRYRLRNEKEKLIHTAFPIEKNLNLSEQYNQLLGALDCLIEECDSELIEDYKDWDYSEEQCLLILCSMGLVCFAAKQVGVIKCASRF
>NZ_CP046821.1|WP_154170981.1|786130_786220_-|hypothetical-protein
MAFLLCVDFGGFSVMRKLGSSVVSPLSGR
>NZ_CP046821.1|WP_158137385.1|786256_786595_-|hypothetical-protein
MAYVIADTGFANQKLYAFYPVQDEEQINWNLVSIVSTNYDHDGSILLTAETLRELQEKNVAIFESKKSAKAVYHKLGIANCRYVRLILSITHEFKTRNGSYRSSWTDLNSKV
>NZ_CP046821.1|WP_094165685.1|786639_786750_-|DUF3265-domain-containing-protein
MTNASRGTSNAWHFYYALVFVVTVLCGNLVVALSAP
>NZ_CP046821.1|WP_099610012.1|787264_787561_-|antibiotic-biosynthesis-monooxygenase
MFRVIYEWRVPSNKMDEFQKVWSSTTDSIHHTVEGALGSFMLHSFDKPEKVLTIAKWRSRQDWELFWENSNPEKMQKMREIAERISVESFDEIEDRSK
>NZ_CP046821.1|WP_094166271.1|787738_788029_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MMTYKLKFLPAAQKEWSKLAPTIQSQFKKKLKERLENPHVPSSKLRGYDSVYKIKLRTAGYRLAYEVIDNEVVVYVLAVGKRDKDAVYKKLASRFS
>NZ_CP046821.1|WP_001250181.1|788015_788267_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MRQVLANCSASISELKKNPTALLNEADGSAIAILNHNKPAAYLVPAETYEYLMDMLDDYELSQIVDSRRGDLSQAVEINIDDL
>NZ_CP046821.1|WP_158137386.1|788326_788437_-|hypothetical-protein
MAFLLCVDFGGFSVMRKLGSSVVSPLSGRYASFVNL

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Crispr_ID: NZ_CP046821_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046821_3

785656-785984

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT

5 spacers

The CRISPR arrays of NZ_CP046821_3

>merge|NZ_CP046821|3|785656-785984|PILER-CR,CRISPRCasFinder,CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAACCGCGATATGCTGCGTGAACAAACTATTGATGATTTCTAAGCTGCCTGTGCGGCAGTGAACAAAGAGTTTTTGCAGTTATCAAACTCATATAAATTTCTAAGCTGCCTGTGCGGCAGTGAACTATCAGTCGGCAATATCGGCGAAGATGGTGATTTTCTAAGCTGCCTGTGCGGCAGTGAACACCGAGGCGAAGTATACGAATCTGAAGTTAAATTTCTAAGCTGCCTGTGCGGCAGTGAACGTATAACTTCTTCTGCATTCGGAATCGGTAATTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP046821|3|2|785656-785984|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGCGATATGCTGCGTGAACAAACTATTGATGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAGAGTTTTTGCAGTTATCAAACTCATATAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATCAGTCGGCAATATCGGCGAAGATGGTGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACCGAGGCGAAGTATACGAATCTGAAGTTAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTATAACTTCTTCTGCATTCGGAATCGGTAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP046821|3|3|785656-785984|CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGCGATATGCTGCGTGAACAAACTATTGATGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAGAGTTTTTGCAGTTATCAAACTCATATAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATCAGTCGGCAATATCGGCGAAGATGGTGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACCGAGGCGAAGTATACGAATCTGAAGTTAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTATAACTTCTTCTGCATTCGGAATCGGTAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP046821|3|2|785656-785984|CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGCGATATGCTGCGTGAACAAACTATTGATGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAGAGTTTTTGCAGTTATCAAACTCATATAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATCAGTCGGCAATATCGGCGAAGATGGTGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACCGAGGCGAAGTATACGAATCTGAAGTTAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTATAACTTCTTCTGCATTCGGAATCGGTAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046821.1\|WP_158137385.1\|786256_786595_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_158137382.1\|781869_782565_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379142
NZ_CP046821.1\|WP_010319335.1\|788828_789326_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_CP046821.1\|WP_094166271.1\|787738_788029_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP046821.1\|WP_094165685.1\|781711_781822_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NZ_CP046821.1\|WP_158137381.1\|781225_781660_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_158137383.1\|782689_783358_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NZ_CP046821.1\|WP_081480741.1\|779625_779736_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NZ_CP046821.1\|WP_001250181.1\|788015_788267_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|225072
NZ_CP046821.1\|WP_158137446.1\|789357_789468_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NZ_CP046821.1\|WP_158137379.1\|780521_780764_+\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	unknown	unknown	gnl\|CDD\|273688
NZ_CP046821.1\|WP_004394087.1\|788559_788832_+\|DUF1778-domain-containing-protein	unknown	unknown	gnl\|CDD\|226860
NZ_CP046821.1\|WP_158137451.1\|783947_784058_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NZ_CP046821.1\|WP_158137384.1\|784529_785459_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_158137386.1\|788326_788437_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_154170981.1\|786130_786220_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_154171045.1\|784131_784329_-\|DUF1289-domain-containing-protein	unknown	unknown	gnl\|CDD\|377738
NZ_CP046821.1\|WP_094165685.1\|786639_786750_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NZ_CP046821.1\|WP_099610012.1\|787264_787561_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|367760
NZ_CP046821.1\|WP_158137380.1\|780772_781072_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194

Protein	Function_ID	Function_description	E-value
NZ_CP046821.1\|WP_158137446.1\|789357_789468_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	0.00023706
NZ_CP046821.1\|WP_094165685.1\|781711_781822_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	2.12152e-05
NZ_CP046821.1\|WP_010319335.1\|788828_789326_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.06562e-06
NZ_CP046821.1\|WP_094166271.1\|787738_788029_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	2.02079e-22
NZ_CP046821.1\|WP_158137382.1\|781869_782565_-\|hypothetical-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	1.21029e-12
NZ_CP046821.1\|WP_081480741.1\|779625_779736_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	1.59603e-05
NZ_CP046821.1\|WP_158137383.1\|782689_783358_-\|HAD-IA-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	1.13472e-24
NZ_CP046821.1\|WP_094165685.1\|786639_786750_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	2.12152e-05
NZ_CP046821.1\|WP_001250181.1\|788015_788267_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|225072	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	1.48797e-16
NZ_CP046821.1\|WP_158137379.1\|780521_780764_+\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	gnl\|CDD\|273688	TIGR01552, Hypothetical_protein_Rv3357/MT3465/Mb3392., prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	2.7342e-10
NZ_CP046821.1\|WP_158137451.1\|783947_784058_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	0.00360524
NZ_CP046821.1\|WP_004394087.1\|788559_788832_+\|DUF1778-domain-containing-protein	gnl\|CDD\|226860	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown].	3.76486e-19
NZ_CP046821.1\|WP_154171045.1\|784131_784329_-\|DUF1289-domain-containing-protein	gnl\|CDD\|377738	pfam06945, DUF1289, Protein of unknown function (DUF1289). This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	3.08099e-14
NZ_CP046821.1\|WP_099610012.1\|787264_787561_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|367760	pfam03992, ABM, Antibiotic biosynthesis monooxygenase. This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species. It's occurrence as a repeat in Streptomyces coelicolor SCO1909 is suggestive that the other proteins function as multimers. There is also a conserved histidine which is likely to be an active site residue.	5.27104e-06
NZ_CP046821.1\|WP_158137380.1\|780772_781072_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.36182e-24

>NZ_CP046821.1|WP_158137384.1|784529_785459_-|hypothetical-protein
MDWLDVIPSSMSAVASVAAAVAAIASWRVSRRATSIAESTALATHHSAATLVYVQEVKQLNALISDLDKLAFEITSTWSKQLQRFDNPDLGGTDPRPLRHVLYNGYELLADYASDSKKQIGAASSGILSPIRNGMGSITEDEYNKLLKKVDGTPCSFEATLGLPSKSKSITSAPAFRWVYYQLLKRVESQDWRSVWTEAWLEAGYLNQYKSVFVRLKPELIGSRYRLRNEKEKLIHTAFPIEKNLNLSEQYNQLLGALDCLIEECDSELIEDYKDWDYSEEQCLLILCSMGLVCFAAKQVGVIKCASRF
>NZ_CP046821.1|WP_154171045.1|784131_784329_-|DUF1289-domain-containing-protein
MVNVNETKSEDPKSPCNRHCSLDENDICLGCFRTLNDILKWQSSTIAERIEILSLCQKRKEHYSR
>NZ_CP046821.1|WP_158137451.1|783947_784058_-|DUF3265-domain-containing-protein
MTNGSRGTTNAWHFYCALVFVVSVLCGNLAVALVAP
>NZ_CP046821.1|WP_158137383.1|782689_783358_-|HAD-IA-family-hydrolase
MRMYDTVIFDYGNTLCEMGNLSNSLKVVLESKCAEQIGHSIERSIKELYSPDQVEQPRWIDIWEKSFNEYGLTFEQSIGLEHLNHFVDSGHMYSYSLPLLSSLQKQGTKLILLSNVTGPTEVFQRDLSERGLAKYFDSVIWSSEIGFRKPSRQAFEIALESTGSISSNTIMVGDNEIADVCGAELVGISTMLISDVESIESRANHVVNRTNITRELIRLTRR
>NZ_CP046821.1|WP_158137382.1|781869_782565_-|hypothetical-protein
MKNFTHLYQSFKYSMVRITVRTESGDLSNGSAFHIGDGWLATAAHVVNGGEIEEIVSEYCNENLVVEKIISHSDDRVDLAIIKTNLDLTHYLTKTTIVGSPEGFIQTDHIEIGGHLDDWIGDELVLSKVLLMGYPPIPFSNGPVLLASEGEVNAVVDKYNGPHPHFIISNMGRGGYSGGPVLSEYGFLLGVLTESLVANNQSEELGYSSAISVEPLLVLLQENGVYPGKNK
>NZ_CP046821.1|WP_094165685.1|781711_781822_-|DUF3265-domain-containing-protein
MTNASRGTSNAWHFYYALVFVVTVLCGNLVVALSAP
>NZ_CP046821.1|WP_158137381.1|781225_781660_-|hypothetical-protein
MSITTLFRVILISGLVTSIVGIIAGFSLSETLPPILQEYLLQAEKKEVSNFEMVFLLVASLALLVLLPVSTVGLWKFKRWARTLYIVISIVFIPLSIFVGPIVMNSWEAMFNEIAILLEGILIAMMFMGPISEKFKHVAVIKTS
>NZ_CP046821.1|WP_158137380.1|780772_781072_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MHNKQYRLSSLAQTHLRKVKNYTINNFSELQWQRYKETLLSGFQMLADNPDLGRSCHEIYSNGFYFPIGKHTAYFTKEENFILIVAVLGQSQLPQNHLK
>NZ_CP046821.1|WP_158137379.1|780521_780764_+|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin
MHTLTANDAKRNFGELLLNAQRQPIKISKNSKDAVVVMSIHDYEELEMMKTEYLKHCFNAAKDDLAKGNVIDGKDFLNEL
>NZ_CP046821.1|WP_081480741.1|779625_779736_-|DUF3265-domain-containing-protein
MTNASRGTSNAWHFYYALIFVVTVLCGNLVVALSAP
>NZ_CP046821.1|WP_154170981.1|786130_786220_-|hypothetical-protein
MAFLLCVDFGGFSVMRKLGSSVVSPLSGR
>NZ_CP046821.1|WP_158137385.1|786256_786595_-|hypothetical-protein
MAYVIADTGFANQKLYAFYPVQDEEQINWNLVSIVSTNYDHDGSILLTAETLRELQEKNVAIFESKKSAKAVYHKLGIANCRYVRLILSITHEFKTRNGSYRSSWTDLNSKV
>NZ_CP046821.1|WP_094165685.1|786639_786750_-|DUF3265-domain-containing-protein
MTNASRGTSNAWHFYYALVFVVTVLCGNLVVALSAP
>NZ_CP046821.1|WP_099610012.1|787264_787561_-|antibiotic-biosynthesis-monooxygenase
MFRVIYEWRVPSNKMDEFQKVWSSTTDSIHHTVEGALGSFMLHSFDKPEKVLTIAKWRSRQDWELFWENSNPEKMQKMREIAERISVESFDEIEDRSK
>NZ_CP046821.1|WP_094166271.1|787738_788029_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MMTYKLKFLPAAQKEWSKLAPTIQSQFKKKLKERLENPHVPSSKLRGYDSVYKIKLRTAGYRLAYEVIDNEVVVYVLAVGKRDKDAVYKKLASRFS
>NZ_CP046821.1|WP_001250181.1|788015_788267_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MRQVLANCSASISELKKNPTALLNEADGSAIAILNHNKPAAYLVPAETYEYLMDMLDDYELSQIVDSRRGDLSQAVEINIDDL
>NZ_CP046821.1|WP_158137386.1|788326_788437_-|hypothetical-protein
MAFLLCVDFGGFSVMRKLGSSVVSPLSGRYASFVNL
>NZ_CP046821.1|WP_004394087.1|788559_788832_+|DUF1778-domain-containing-protein
MATTLPRITARVDVDTQNLLTKAAALAGMSSINSFVLNAAIEKAKQVIEREQTLKLSQADAILLMEALDKPTTLNQKLKTAAERYETKNQ
>NZ_CP046821.1|WP_010319335.1|788828_789326_+|GNAT-family-N-acetyltransferase
MMKTVLLDKDKHDRNRFNCGIDALNNYLKVMASQQAKKDNTRTFVLEDENNTSLIIGFYTLTMTPIDLKALPDKLQKKHQSSTSGGLIARLAIDERYKGKGFGEWLLIDALRKLLAASDSVAFPVVIVDAKDGAKHFYERYGFKAFQDAENKLFITISDIRASLG
>NZ_CP046821.1|WP_158137446.1|789357_789468_-|DUF3265-domain-containing-protein
MTNASRGTSNAWHLYYALAFVVTVLCGNLVVALSAP

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Crispr_ID: NZ_CP046821_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046821_4

821449-821716

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT

4 spacers

The CRISPR arrays of NZ_CP046821_4

>merge|NZ_CP046821|4|821449-821716|PILER-CR,CRISPRCasFinder,CRT
TTTTTAAGCTGCCTGTGCGGCAGTGAACGTTCATATCGAAGAGATTAGCGAAATGTTCACTTTCTAAGCTGCCTGTGCGGCAGTGAACTTTGGAGTACAACTTGCTCGCCGAGAACGTGGTTTCTAAGCTGCCTGTGCGGCAGTGAACATCTGAACTGGGCGGCATCTTAAAGGGCGATGTTTCTAAGCTGCCTGTGCGGCAGTGAACACTCCGGCAACGTAGGAAGCTCAACATCAAAATTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP046821|4|3|821449-821716|PILER-CR
TTTTTAAGCTGCCTGTGCGGCAGTGAAC	GTTCATATCGAAGAGATTAGCGAAATGTTCAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTGGAGTACAACTTGCTCGCCGAGAACGTGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATCTGAACTGGGCGGCATCTTAAAGGGCGATG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACTCCGGCAACGTAGGAAGCTCAACATCAAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP046821|4|4|821449-821716|CRISPRCasFinder
TTTTTAAGCTGCCTGTGCGGCAGTGAAC	GTTCATATCGAAGAGATTAGCGAAATGTTCAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTGGAGTACAACTTGCTCGCCGAGAACGTGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATCTGAACTGGGCGGCATCTTAAAGGGCGATG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACTCCGGCAACGTAGGAAGCTCAACATCAAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP046821|4|3|821449-821716|CRT
TTTTTAAGCTGCCTGTGCGGCAGTGAAC	GTTCATATCGAAGAGATTAGCGAAATGTTCAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTGGAGTACAACTTGCTCGCCGAGAACGTGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATCTGAACTGGGCGGCATCTTAAAGGGCGATG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACTCCGGCAACGTAGGAAGCTCAACATCAAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046821.1\|WP_158137457.1\|819321_819435_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NZ_CP046821.1\|WP_158137408.1\|820131_820761_-\|FMN-binding-negative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377290
NZ_CP046821.1\|WP_158137406.1\|818087_818207_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_045572526.1\|816855_817098_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|273688
NZ_CP046821.1\|WP_158137409.1\|820919_821261_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_158137405.1\|817558_818098_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046821.1\|WP_154170982.1\|817106_817406_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP046821.1\|WP_158137407.1\|819440_819983_-\|yfeABCD-locus-regulator	unknown	unknown	gnl\|CDD\|372875
NZ_CP046821.1\|WP_158137443.1\|822338_822449_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NZ_CP046821.1\|WP_158137410.1\|821873_821990_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NZ_CP046821.1\|WP_158137458.1\|820778_820916_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NZ_CP046821.1\|WP_158137456.1\|817440_817566_-\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509

Protein	Function_ID	Function_description	E-value
NZ_CP046821.1\|WP_158137457.1\|819321_819435_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	5.04614e-05
NZ_CP046821.1\|WP_154170982.1\|817106_817406_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	4.6626e-24
NZ_CP046821.1\|WP_158137407.1\|819440_819983_-\|yfeABCD-locus-regulator	gnl\|CDD\|372875	pfam14002, YniB, YniB-like protein. The YniB-like protein family includes the E. coli YniB protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 180 amino acids in length. This family of proteins are integral membrane proteins.	5.0995e-64
NZ_CP046821.1\|WP_158137408.1\|820131_820761_-\|FMN-binding-negative-transcriptional-regulator	gnl\|CDD\|377290	pfam04299, FMN_bind_2, Putative FMN-binding domain. In Bacillus subtilis, family member PAI 2/ORF-2 was found to be essential for growth. The SUPERFAMILY database finds that this domain is related to FMN-binding domains, suggesting this protein is also FMN-binding.	4.48863e-78
NZ_CP046821.1\|WP_158137410.1\|821873_821990_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	6.46479e-05
NZ_CP046821.1\|WP_158137456.1\|817440_817566_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	0.00126565
NZ_CP046821.1\|WP_158137458.1\|820778_820916_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	0.00898118
NZ_CP046821.1\|WP_045572526.1\|816855_817098_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|273688	TIGR01552, Hypothetical_protein_Rv3357/MT3465/Mb3392., prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	3.38408e-10
NZ_CP046821.1\|WP_158137443.1\|822338_822449_-\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	8.49895e-05

>NZ_CP046821.1|WP_158137409.1|820919_821261_-|hypothetical-protein
MDKWLKEMNEALDEALQAISSGDIPKENMYKLASIFYSKRNHMNNDSLFEVMTNEIDERVKSDWLFDTDSKEQYKFHFVSSYLFCYVVAGKIDEFLYDQIMNRINQEMDLFDN
>NZ_CP046821.1|WP_158137458.1|820778_820916_-|DUF3265-domain-containing-protein
MLKQAHNKRFKRDNQRVAFLLCVGFCGYGVMRKVGSSVGCPLTGR
>NZ_CP046821.1|WP_158137408.1|820131_820761_-|FMN-binding-negative-transcriptional-regulator
MHIPGKFKQDNIDVLINLMREYPFATVITSSNSAIEANHLPLSLIELDGKLRLKGHIAKVNSVWQTANPVSEVLVIFNGPNSYVSPSYYPTKKENGKAVPTWNYIVVHVKGKIRFIHEPQWILEVLEQLTSEHEQGQAVPWSMSDAPEGYIHKMLPAVVGVEIEVESLSGQWKLSQNHPEINQQGVVDGLSSKDDTSSQVIASLMSANL
>NZ_CP046821.1|WP_158137407.1|819440_819983_-|yfeABCD-locus-regulator
MNFYEAKRKSILYRLIGSTIVVPCAISTVISFLKMIYFRLDDGSKFGSALSAPFKNLVALIYQKTEFLMFFWENSPTPNHMHISEPNNIPFILIYLTIFIGLTFWGVGNQLSARLKNIRKKIEDQMIEESVKGSAARTHSEITETVFVPNSGMFSSVHKLYVAPIIVAVVGAILVKVLGF
>NZ_CP046821.1|WP_158137457.1|819321_819435_-|DUF3265-domain-containing-protein
MLTNASRGTSNAWHFYYALILVVTVLCGNLVVALSAP
>NZ_CP046821.1|WP_158137406.1|818087_818207_-|hypothetical-protein
MAFLLCVDFGGYGVMRKLGSSVVSPLSGRYTFWEYICDH
>NZ_CP046821.1|WP_158137405.1|817558_818098_-|hypothetical-protein
MIIRSNIQGGGELHDFGVGYLIGVLESLDNSLIPIHTAIENSSIWEVESYCEHGEYLIGVGFCVMQRYLFDVLQDIEIDPGLARDLGPKSNNGVAVARLIHSAANYWKHAPEWHMWLQELKPNSQKTIDEVLHTRDSAHYPLSDLLADLCCKNSVLLVNCLPYLVEWRKAIYDYIEKNV
>NZ_CP046821.1|WP_158137456.1|817440_817566_-|DUF3265-domain-containing-protein
MYNKRFKRDFQRVAFLLCVDFGGYGVMRKLGSSVVSPLSGR
>NZ_CP046821.1|WP_154170982.1|817106_817406_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MHSKQYKLSSLAQTHLRKVKNYTINNFSELQWQRYKETLLSGFQMLADNPDLGRSCHEIYNNGFYFPIGKHTAYFTKEENFILIVAVLGQSQLPKNHLK
>NZ_CP046821.1|WP_045572526.1|816855_817098_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MHTLTANDAKRNFGELLLNAQRQPIKISKNSKDAVVVMSIHDYEELEMMKTEYLKHCFNAAKDDLAKGNVVDGKDFLNEL
>NZ_CP046821.1|WP_158137410.1|821873_821990_-|DUF3265-domain-containing-protein
MKYNKQFKQTLNAWHFYYALVFVITVLCGKLVVAFRAT
>NZ_CP046821.1|WP_158137443.1|822338_822449_-|DUF3265-domain-containing-protein
MTNASRGTSNAWHFYYALTLVVSVLCGNLVVALSAP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP046821_3	3.1\|785684\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	785684-785715	32	MT662115	Vibrio phage ValB1MD-2, complete genome	18462-18493	2	0.938
NZ_CP046821_3	3.1\|785684\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	785684-785715	32	NC_022747	Vibrio phage VPUSM 8, complete genome	16277-16308	2	0.938
NZ_CP046821_3	3.1\|785684\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	785684-785715	32	KX058879	Vibrio phage VcP032, complete genome	15264-15295	2	0.938
NZ_CP046821_3	3.1\|785684\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	785684-785715	32	AB374228	Vibrio phage kappa proviral DNA, complete genome	14913-14944	2	0.938
NZ_CP046821_3	3.1\|785684\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	785684-785715	32	HG803181	Vibrio phage PV94 complete genome	16242-16273	2	0.938
NZ_CP046821_3	3.1\|785684\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	785684-785715	32	AF125163	Bacteriophage K139, complete genome	15267-15298	2	0.938
NZ_CP046821_3	3.1\|785684\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	785684-785715	32	NC_003313	Vibrio phage K139, complete genome	15267-15298	2	0.938
NZ_CP046821_3	3.1\|785684\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	785684-785715	32	KU504502	UNVERIFIED: Vibrio phage 919TP, complete genome	15298-15329	2	0.938
NZ_CP046821_3	3.1\|785684\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	785684-785715	32	JF974301	Vibrio phage VD1, * SEQUENCING IN PROGRESS *, 5 unordered pieces	55692-55723	2	0.938
NZ_CP046821_2	2.1\|783551\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	783551-783582	32	NZ_CP032196	Klebsiella pneumoniae strain AR_0097 plasmid unnamed2, complete sequence	1435-1466	6	0.812
NZ_CP046821_2	2.1\|783551\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	783551-783582	32	NZ_CP027615	Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed3, complete sequence	7891-7922	6	0.812
NZ_CP046821_2	2.1\|783551\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	783551-783582	32	NZ_CP031578	Klebsiella pneumoniae strain N4b plasmid p1502320-1	27344-27375	6	0.812
NZ_CP046821_3	3.3\|785805\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	785805-785836	32	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	2029156-2029187	7	0.781
NZ_CP046821_2	2.3\|783671\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	783671-783702	32	KY971610	Pseudomonas phage PspYZU05, complete genome	128236-128267	8	0.75
NZ_CP046821_2	2.3\|783671\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	783671-783702	32	NZ_CP045225	Clostridioides difficile strain TW11 plasmid p_TW11, complete sequence	40251-40282	8	0.75
NZ_CP046821_4	4.1\|821477\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	821477-821508	32	NZ_CP015805	Borrelia mayonii strain MN14-1539 plasmid lp28-10	17518-17549	8	0.75
NZ_CP046821_4	4.1\|821477\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	821477-821508	32	NZ_CP015805	Borrelia mayonii strain MN14-1539 plasmid lp28-10	18700-18731	8	0.75
NZ_CP046821_4	4.1\|821477\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	821477-821508	32	NZ_CP015790	Borrelia mayonii strain MN14-1420 plasmid lp28-10, complete sequence	21764-21795	8	0.75
NZ_CP046821_4	4.1\|821477\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	821477-821508	32	NZ_CP015790	Borrelia mayonii strain MN14-1420 plasmid lp28-10, complete sequence	22946-22977	8	0.75
NZ_CP046821_4	4.3\|821597\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	821597-821628	32	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	330393-330424	8	0.75
NZ_CP046821_2	2.3\|783671\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	783671-783702	32	MK448844	Streptococcus phage Javan116, complete genome	11139-11170	9	0.719
NZ_CP046821_3	3.3\|785805\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	785805-785836	32	NZ_KR106191	Pseudomonas aeruginosa strain HS87 plasmid pHS87b, complete sequence	3953-3984	9	0.719
NZ_CP046821_3	3.4\|785865\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	785865-785896	32	NZ_MH220285	Acinetobacter ursingii strain RIVM0002 plasmid pRIVM0002_IMP-4_171109_B03, complete sequence	35344-35375	9	0.719
NZ_CP046821_3	3.4\|785865\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	785865-785896	32	NZ_MH220287	Acinetobacter ursingii strain RIVM0061 plasmid pRIVM0061_IMP-4_171109_B01, complete sequence	42572-42603	9	0.719
NZ_CP046821_4	4.1\|821477\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	821477-821508	32	MT188704	Mesorhizobium phage Cp1R7A-A1, complete genome	84527-84558	9	0.719
NZ_CP046821_4	4.2\|821537\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	821537-821568	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	51417-51448	9	0.719
NZ_CP046821_4	4.3\|821597\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	821597-821628	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	63688-63719	9	0.719
NZ_CP046821_4	4.3\|821597\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	821597-821628	32	AP014063	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C13-MedDCM-OCT-S32-C51, * SEQUENCING IN PROGRESS *	1909-1940	9	0.719
NZ_CP046821_2	2.3\|783671\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	783671-783702	32	NC_018878	Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence	174000-174031	10	0.688
NZ_CP046821_3	3.3\|785805\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	785805-785836	32	NZ_CP050093	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence	449280-449311	10	0.688
NZ_CP046821_4	4.3\|821597\|32\|NZ_CP046821\|PILER-CR,CRISPRCasFinder,CRT	821597-821628	32	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	792632-792663	10	0.688

1. spacer 3.1|785684|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to MT662115 (Vibrio phage ValB1MD-2, complete genome) position: , mismatch: 2, identity: 0.938

cgcgatatgctgcgtgaacaaactattgatga	CRISPR spacer
cgcgatatgttgcgtgaacaaaccattgatga	Protospacer
*********.*************.********

2. spacer 3.1|785684|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NC_022747 (Vibrio phage VPUSM 8, complete genome) position: , mismatch: 2, identity: 0.938

cgcgatatgctgcgtgaacaaactattgatga	CRISPR spacer
cgcgatatgttgcgtgaacaaacgattgatga	Protospacer
*********.************* ********

3. spacer 3.1|785684|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to KX058879 (Vibrio phage VcP032, complete genome) position: , mismatch: 2, identity: 0.938

cgcgatatgctgcgtgaacaaactattgatga	CRISPR spacer
cgcgatatgttgcgtgaacaaacgattgatga	Protospacer
*********.************* ********

4. spacer 3.1|785684|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to AB374228 (Vibrio phage kappa proviral DNA, complete genome) position: , mismatch: 2, identity: 0.938

cgcgatatgctgcgtgaacaaactattgatga	CRISPR spacer
cgcgatatgttgcgtgaacaaacgattgatga	Protospacer
*********.************* ********

5. spacer 3.1|785684|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to HG803181 (Vibrio phage PV94 complete genome) position: , mismatch: 2, identity: 0.938

cgcgatatgctgcgtgaacaaactattgatga	CRISPR spacer
cgcgatatgttgcgtgaacaaacgattgatga	Protospacer
*********.************* ********

6. spacer 3.1|785684|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to AF125163 (Bacteriophage K139, complete genome) position: , mismatch: 2, identity: 0.938

cgcgatatgctgcgtgaacaaactattgatga	CRISPR spacer
cgcgatatgttgcgtgaacaaacgattgatga	Protospacer
*********.************* ********

7. spacer 3.1|785684|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NC_003313 (Vibrio phage K139, complete genome) position: , mismatch: 2, identity: 0.938

cgcgatatgctgcgtgaacaaactattgatga	CRISPR spacer
cgcgatatgttgcgtgaacaaacgattgatga	Protospacer
*********.************* ********

8. spacer 3.1|785684|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to KU504502 (UNVERIFIED: Vibrio phage 919TP, complete genome) position: , mismatch: 2, identity: 0.938

cgcgatatgctgcgtgaacaaactattgatga	CRISPR spacer
cgcgatatgttgcgtgaacaaacgattgatga	Protospacer
*********.************* ********

9. spacer 3.1|785684|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to JF974301 (Vibrio phage VD1, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces) position: , mismatch: 2, identity: 0.938

cgcgatatgctgcgtgaacaaactattgatga	CRISPR spacer
cgcgatatgttgcgtgaacaaacgattgatga	Protospacer
*********.************* ********

10. spacer 2.1|783551|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032196 (Klebsiella pneumoniae strain AR_0097 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

ttaatgctaaaatgcccttatcaatcggatag	CRISPR spacer
gttttgctaaaatacccttatcaatcagatat	Protospacer
 *  *********.************.****

11. spacer 2.1|783551|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027615 (Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.812

ttaatgctaaaatgcccttatcaatcggatag	CRISPR spacer
gttttgctaaaatacccttatcaatcagatat	Protospacer
 *  *********.************.****

12. spacer 2.1|783551|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031578 (Klebsiella pneumoniae strain N4b plasmid p1502320-1) position: , mismatch: 6, identity: 0.812

ttaatgctaaaatgcccttatcaatcggatag	CRISPR spacer
gttttgctaaaatacccttatcaatcagatat	Protospacer
 *  *********.************.****

13. spacer 3.3|785805|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 7, identity: 0.781

tatcag--tcggcaatatcggcgaagatggtgat	CRISPR spacer
--tcggcttcggcaatatcggcgaggatcgtaac	Protospacer
  **.*  ****************.*** **.*.

14. spacer 2.3|783671|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 8, identity: 0.75

cgtcgcagaattttaatcaagagaaaaagtga	CRISPR spacer
ggcatcagaattttaatcaaaataaaaagtcc	Protospacer
 *.  ***************.* *******

15. spacer 2.3|783671|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045225 (Clostridioides difficile strain TW11 plasmid p_TW11, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcgcagaattttaatcaagagaaaaagtga	CRISPR spacer
aggggcagaatttgaattaagagaaaaaacaa	Protospacer
 *  ********* ***.**********...*

16. spacer 4.1|821477|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015805 (Borrelia mayonii strain MN14-1539 plasmid lp28-10) position: , mismatch: 8, identity: 0.75

gttcatatcgaagagattagcgaaatgttcac	CRISPR spacer
agtgctatcaaagaaattagcgaaatgttgaa	Protospacer
. *  ****.****.************** *

17. spacer 4.1|821477|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015805 (Borrelia mayonii strain MN14-1539 plasmid lp28-10) position: , mismatch: 8, identity: 0.75

gttcatatcgaagagattagcgaaatgttcac	CRISPR spacer
agtgctatcaaagaaattagcgaaatgttgaa	Protospacer
. *  ****.****.************** *

18. spacer 4.1|821477|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015790 (Borrelia mayonii strain MN14-1420 plasmid lp28-10, complete sequence) position: , mismatch: 8, identity: 0.75

gttcatatcgaagagattagcgaaatgttcac	CRISPR spacer
agtgctatcaaagaaattagcgaaatgttgaa	Protospacer
. *  ****.****.************** *

19. spacer 4.1|821477|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015790 (Borrelia mayonii strain MN14-1420 plasmid lp28-10, complete sequence) position: , mismatch: 8, identity: 0.75

gttcatatcgaagagattagcgaaatgttcac	CRISPR spacer
agtgctatcaaagaaattagcgaaatgttgaa	Protospacer
. *  ****.****.************** *

20. spacer 4.3|821597|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

atctgaactgggcggcatcttaaagggcgatg	CRISPR spacer
ttctctcgcgggcggcatcttccagggcgatg	Protospacer
 ***    .************  *********

21. spacer 2.3|783671|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to MK448844 (Streptococcus phage Javan116, complete genome) position: , mismatch: 9, identity: 0.719

cgtcgcagaattttaatcaagagaaaaagtga	CRISPR spacer
aatttcagaaattttatcaagagaaaaatttt	Protospacer
 .*. ***** *** ************* *

22. spacer 3.3|785805|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KR106191 (Pseudomonas aeruginosa strain HS87 plasmid pHS87b, complete sequence) position: , mismatch: 9, identity: 0.719

tatcagtcggcaatatcggcgaagatggtgat	CRISPR spacer
cggcggtcggctatatcggcgaggatggtttg	Protospacer
.. *.****** **********.******

23. spacer 3.4|785865|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH220285 (Acinetobacter ursingii strain RIVM0002 plasmid pRIVM0002_IMP-4_171109_B03, complete sequence) position: , mismatch: 9, identity: 0.719

accgaggcgaagtatacgaatctgaagttaaa	CRISPR spacer
aagatggcgaagtatacgaaattgaagtgagt	Protospacer
*  . *************** .****** *.

24. spacer 3.4|785865|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH220287 (Acinetobacter ursingii strain RIVM0061 plasmid pRIVM0061_IMP-4_171109_B01, complete sequence) position: , mismatch: 9, identity: 0.719

accgaggcgaagtatacgaatctgaagttaaa	CRISPR spacer
aagatggcgaagtatacgaaattgaagtgagt	Protospacer
*  . *************** .****** *.

25. spacer 4.1|821477|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to MT188704 (Mesorhizobium phage Cp1R7A-A1, complete genome) position: , mismatch: 9, identity: 0.719

gttcatatcgaagagattagcgaaatgttcac	CRISPR spacer
ccgtcgatcgaagagatgagcgacatgttcat	Protospacer
 . .  *********** ***** *******.

26. spacer 4.2|821537|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

tttggagt----acaacttgctcgccgagaacgtgg	CRISPR spacer
----aggtcacggcaacgtgctcgccgagagcgtgg	Protospacer
    ..**    .**** ************.*****

27. spacer 4.3|821597|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

atctgaactgggcggcatcttaaagggcgatg	CRISPR spacer
caatcagtcgggcggcttcttcaagggcgatg	Protospacer
   * *...******* **** **********

28. spacer 4.3|821597|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to AP014063 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C13-MedDCM-OCT-S32-C51, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

atctgaactgggcggcatcttaaagggcgatg	CRISPR spacer
gcatgaactgggcggcagcttgaaggctgact	Protospacer
.. ************** ***.**** .**.

29. spacer 2.3|783671|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NC_018878 (Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcgcagaattttaatcaagagaaaaagtga	CRISPR spacer
agaaaaagaattcgaatcaagagaaaaagaac	Protospacer
 *  . ******. *************** .

30. spacer 3.3|785805|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 10, identity: 0.688

tatcagtcggcaatatcggcgaagatggtgat	CRISPR spacer
cgaaggccggccatatcggcgacgatggtgga	Protospacer
..  .*.**** ********** *******.

31. spacer 4.3|821597|32|NZ_CP046821|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 10, identity: 0.688

atctgaactgggcggcatcttaaagggcgatg	CRISPR spacer
gaaccagtcgggcggcttcttcaagggcgatg	Protospacer
.  . *...******* **** **********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

586003 : 594158

Diachasmimorpha_longicaudata_entomopoxvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158137279.1\|586003_587266_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.3e-55	35.0
WP_154171144.1\|587326_588106_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_154171143.1\|588225_588741_-	NUDIX domain-containing protein	Q5ULM8	Lactobacillus_virus	1.3e-06	33.3
WP_154171142.1\|589077_590727_+	DUF3763 domain-containing protein	A0A2H4PB07	Aphanizomenon_phage	4.1e-33	30.7
WP_158137280.1\|590740_592183_+	ATPase RavA stimulator ViaA	A7KV72	Bacillus_phage	8.0e-09	22.4
WP_040905069.1\|592186_592846_-	hypothetical protein	M4PMR5	Vibrio_phage	4.8e-25	34.8
WP_158137281.1\|592766_593504_-	hypothetical protein	NA	NA	NA	NA
WP_154171140.1\|593684_594158_-	redoxin family protein	M1I839	Pelagibacter_phage	2.5e-23	43.9

DBSCAN-SWA_2

691439 : 743280

Vibrio_phage(38.1%)

integrase,protease,transposase

attL 682382:682397|attR 716945:716960

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
682382:682397	attL	NA	NA	NA	NA
WP_154171067.1\|691439_692234_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_158137326.1\|692381_692837_+	hotdog fold thioesterase	NA	NA	NA	NA
WP_154171065.1\|692833_693067_+	DUF3389 family protein	NA	NA	NA	NA
WP_158137327.1\|693147_694836_+	SgrR family transcriptional regulator	NA	NA	NA	NA
WP_154171063.1\|694877_695765_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_158137328.1\|695782_698470_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_040905007.1\|698749_699325_+	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA
WP_158137329.1\|699520_700525_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_158137330.1\|700508_701462_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_154171059.1\|701563_701950_+	DUF3319 domain-containing protein	NA	NA	NA	NA
WP_004396328.1\|701968_702280_+	stress response translation initiation inhibitor YciH	NA	NA	NA	NA
WP_158137331.1\|702457_702814_-	hypothetical protein	Q9MCC3	Vibrio_phage	2.6e-41	72.9
WP_158137332.1\|702990_703206_+	hypothetical protein	NA	NA	NA	NA
WP_158137333.1\|703208_703469_+	hypothetical protein	NA	NA	NA	NA
WP_158137334.1\|703458_704775_+	replication initiation factor family protein	R9TNS0	Vibrio_phage	4.9e-114	51.5
WP_110167255.1\|704780_705128_+	DUF1293 domain-containing protein	Q858R2	Vibrio_phage	7.5e-22	46.1
WP_158137335.1\|705135_705369_+	hypothetical protein	NA	NA	NA	NA
WP_158137440.1\|705405_705600_+	hypothetical protein	G8IRU7	Vibrio_phage	3.9e-20	71.4
WP_158137336.1\|705920_707324_+	hypothetical protein	G8IRU9	Vibrio_phage	8.6e-16	26.9
WP_158137337.1\|707323_707668_+	DUF2523 domain-containing protein	G8IRV0	Vibrio_phage	2.3e-23	49.1
WP_158137338.1\|707669_709040_+	toxin	Q64EV0	Vibrio_phage	7.1e-172	67.3
WP_158137339.1\|709511_709895_+	hypothetical protein	NA	NA	NA	NA
WP_158137340.1\|709896_710268_-	regulator	Q9MCC4	Vibrio_phage	8.6e-40	61.3
WP_158137341.1\|710430_711702_+	aminotransferase class V-fold PLP-dependent enzyme	A0A0B5JD48	Pandoravirus	3.0e-15	25.8
WP_004396324.1\|712083_712248_-	YoaH family protein	NA	NA	NA	NA
WP_158137441.1\|712288_713350_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_158137123.1\|713540_714664_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.9e-26	31.8
WP_158137342.1\|714774_715650_-	DUF2861 family protein	NA	NA	NA	NA
WP_154171055.1\|715653_716313_-	response regulator	W8CYM9	Bacillus_phage	7.9e-28	33.8
WP_154171054.1\|716287_717763_-	DUF3404 domain-containing protein	NA	NA	NA	NA
716945:716960	attR	NA	NA	NA	NA
WP_158137343.1\|717948_719325_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA
WP_158137344.1\|719337_720879_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_158137345.1\|720974_721253_-	transcriptional regulator	NA	NA	NA	NA
WP_004396309.1\|721255_721633_-	hypothetical protein	NA	NA	NA	NA
WP_158137346.1\|721931_723167_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	9.6e-11	28.3
WP_158137347.1\|723320_725078_+	diguanylate cyclase	G3MA91	Bacillus_virus	1.0e-18	34.2
WP_158137348.1\|725231_725564_+	zinc chelation protein SecC	NA	NA	NA	NA
WP_002033345.1\|725771_726062_-	hypothetical protein	NA	NA	NA	NA
WP_158137349.1\|726742_727705_+\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	5.5e-06	27.5
WP_158137350.1\|727738_728212_-	hypothetical protein	NA	NA	NA	NA
WP_158116645.1\|728369_728825_-	DUF2127 domain-containing protein	NA	NA	NA	NA
WP_039438324.1\|728959_729277_-	HigA family addiction module antidote protein	A0A222YWD7	Escherichia_phage	4.0e-14	46.2
WP_158137351.1\|729287_729641_-	toxin	A0A222YWE2	Escherichia_phage	2.0e-25	57.6
WP_158137352.1\|730374_730566_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_158137016.1\|731012_732359_+	group II intron reverse transcriptase/maturase	A0A1I9KFG3	Aeromonas_phage	2.3e-13	24.4
WP_158137353.1\|733238_733430_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_158137016.1\|733876_735223_+	group II intron reverse transcriptase/maturase	A0A1I9KFG3	Aeromonas_phage	2.3e-13	24.4
WP_158137354.1\|735999_736701_-	hypothetical protein	NA	NA	NA	NA
WP_158137355.1\|736835_737300_-	hypothetical protein	NA	NA	NA	NA
WP_000351249.1\|737494_737896_-	type II toxin-antitoxin system death-on-curing family toxin	A0A222YZ88	Escherichia_phage	7.2e-08	29.8
WP_158137349.1\|738449_739412_+\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	5.5e-06	27.5
WP_158137442.1\|739427_739913_-	hypothetical protein	NA	NA	NA	NA
WP_032480879.1\|740821_741286_-	hypothetical protein	NA	NA	NA	NA
WP_154171242.1\|741314_741425_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_158137356.1\|742317_743280_+\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	5.5e-06	27.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046822

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP046821

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection