CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046825	Vibrio mimicus strain 07-2442 chromosome 1, complete sequence	0 crisprs	csa3,DinG,DEDDh,cas3,csx1	0	0	5	0
NZ_CP046826	Vibrio mimicus strain 07-2442 chromosome 2, complete sequence	0 crisprs	cas3,csa3	0	0	3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

301073 : 308079

Anguillid_herpesvirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001162852.1\|301073_301502_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.0e-20	38.4
WP_148539145.1\|301580_302870_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	3.8e-34	34.0
WP_000872176.1\|303027_303222_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_001124187.1\|303270_303609_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_158161171.1\|303622_305473_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	4.1e-106	41.1
WP_158161173.1\|305496_306012_-	co-chaperone HscB	NA	NA	NA	NA
WP_000301571.1\|306060_306384_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.0e-25	50.5
WP_000331703.1\|306444_306828_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
WP_000775248.1\|306864_308079_-	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	1.1e-32	30.8

DBSCAN-SWA_2

544980 : 552290

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005526810.1\|544980_545868_+	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	1.4e-56	41.4
WP_158161304.1\|546196_548785_+	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	3.8e-33	26.3
WP_000116730.1\|548860_549871_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	1.0e-34	34.2
WP_158161306.1\|549944_550880_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	4.6e-05	34.7
WP_158161308.1\|550879_551506_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.5e-36	52.1
WP_158161310.1\|551498_552290_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.5e-69	52.8

DBSCAN-SWA_3

1008188 : 1046600

Vibrio_phage(95.35%)

tail,head,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158161670.1\|1008188_1010084_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_000581310.1\|1010561_1010996_-	FMN-binding protein MioC	NA	NA	NA	NA
WP_158161672.1\|1011938_1012295_-	hypothetical protein	F1D191	Vibrio_phage	1.0e-18	66.7
WP_119788280.1\|1013230_1013818_-	DUF2313 domain-containing protein	A0A2I7S9L6	Vibrio_phage	1.6e-93	80.0
WP_158161674.1\|1013802_1014870_-\|plate	phage baseplate protein	A0A2I7S9E5	Vibrio_phage	1.6e-147	71.8
WP_000095018.1\|1014859_1015309_-	hypothetical protein	M4MB61	Vibrio_phage	1.1e-54	73.6
WP_158161676.1\|1015311_1015926_-\|plate	phage baseplate assembly protein V	M4MCP6	Vibrio_phage	2.5e-68	65.2
WP_158161678.1\|1015922_1016999_-\|tail	phage tail protein	M4M9L5	Vibrio_phage	1.1e-159	75.6
WP_158161680.1\|1016991_1018311_-	multidrug DMT transporter permease	A0A2I7S9E8	Vibrio_phage	1.2e-165	67.6
WP_158161682.1\|1018322_1020083_-\|tail	phage tail tape measure protein	M4MHE6	Vibrio_phage	1.5e-214	69.4
WP_158161684.1\|1020208_1020553_-	hypothetical protein	M4MB64	Vibrio_phage	1.1e-44	80.5
WP_158161686.1\|1020552_1020906_-\|tail	phage tail protein	A0A2I7S9D5	Vibrio_phage	1.1e-41	68.4
WP_158161688.1\|1020920_1022405_-\|tail	phage tail protein	M1Q565	Vibrio_phage	1.2e-206	72.3
WP_158161690.1\|1022407_1022662_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_158161692.1\|1022675_1023275_-	hypothetical protein	M4MHF0	Vibrio_phage	6.4e-69	61.2
WP_119788271.1\|1023271_1023814_-	phage morphogenesis protein	A0A2I7S9D7	Vibrio_phage	1.7e-76	77.7
WP_158161694.1\|1023813_1024248_-	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	1.4e-62	81.9
WP_158161696.1\|1024253_1024829_-	hypothetical protein	M4M9M3	Vibrio_phage	7.6e-19	44.9
WP_119788268.1\|1024918_1025818_-\|head	phage head protein	M4MB71	Vibrio_phage	3.0e-147	82.1
WP_158161698.1\|1025820_1026795_-	peptidase	M1Q578	Vibrio_phage	8.1e-122	67.9
WP_158161700.1\|1027137_1028337_-	hypothetical protein	A0A2D0YJB1	Vibrio_phage	2.6e-85	45.8
WP_158161702.1\|1028333_1028846_-	hypothetical protein	A0A0F6N5P8	Escherichia_phage	3.1e-32	45.6
WP_158161705.1\|1028842_1029091_-	hypothetical protein	NA	NA	NA	NA
WP_001125594.1\|1029102_1029876_-	hypothetical protein	M1PVV7	Vibrio_phage	1.8e-116	76.3
WP_158161707.1\|1029868_1031428_-	DUF935 family protein	M4M9P3	Vibrio_phage	3.5e-228	76.3
WP_158161709.1\|1031424_1032993_-	hypothetical protein	M4MHG0	Vibrio_phage	1.5e-231	77.9
WP_158161711.1\|1033181_1033763_-	DUF3486 family protein	M4MCR3	Vibrio_phage	2.3e-63	70.0
WP_000008606.1\|1033774_1034065_-	hypothetical protein	A0A2I7S9D8	Vibrio_phage	3.9e-40	82.3
WP_000362982.1\|1034073_1034373_-	DUF2730 family protein	M1Q558	Vibrio_phage	2.9e-30	71.0
WP_158161713.1\|1034372_1034603_-	TraR/DksA family transcriptional regulator	M4MHG5	Vibrio_phage	5.2e-19	64.5
WP_001120998.1\|1034599_1035199_-	hypothetical protein	M1NVP4	Vibrio_phage	5.8e-46	57.3
WP_046126522.1\|1035174_1035465_-	hypothetical protein	M1PJ80	Vibrio_phage	3.7e-14	52.2
WP_158161715.1\|1035464_1036022_-	peptidoglycan-binding protein	A0A2I7S9B9	Vibrio_phage	9.2e-70	70.9
WP_001029055.1\|1036106_1036523_-	hypothetical protein	M4MHG9	Vibrio_phage	6.3e-31	50.0
WP_151414285.1\|1036600_1037137_-	hypothetical protein	NA	NA	NA	NA
WP_158161717.1\|1037148_1037703_-	DUF1018 domain-containing protein	A0A2I7S9B8	Vibrio_phage	1.3e-55	61.0
WP_158161719.1\|1037714_1037936_-	hypothetical protein	A0A2I7RXN1	Vibrio_phage	2.3e-24	76.4
WP_000466683.1\|1037947_1038181_-	hypothetical protein	M4M9N5	Vibrio_phage	8.3e-25	67.5
WP_158161721.1\|1038261_1038495_-	hypothetical protein	NA	NA	NA	NA
WP_158161723.1\|1038491_1039028_-	hypothetical protein	A0A0M3LPP6	Mannheimia_phage	1.7e-28	42.3
WP_158161725.1\|1039024_1039495_-	hypothetical protein	M4MHH2	Vibrio_phage	4.4e-49	62.9
WP_000414665.1\|1039491_1039689_-	hypothetical protein	NA	NA	NA	NA
WP_000551393.1\|1039672_1039915_-	hypothetical protein	M4MCS5	Vibrio_phage	4.2e-19	62.0
WP_000512064.1\|1039907_1040180_-	hypothetical protein	A0A2I7S9G2	Vibrio_phage	2.9e-21	61.2
WP_069545115.1\|1040189_1040798_-	DUF3164 family protein	M4MHH7	Vibrio_phage	2.0e-86	79.6
WP_158161727.1\|1040790_1041009_-	hypothetical protein	NA	NA	NA	NA
WP_032472798.1\|1040995_1041193_-	hypothetical protein	NA	NA	NA	NA
WP_158161729.1\|1041158_1041533_-	hypothetical protein	M4MB90	Vibrio_phage	2.4e-26	57.1
WP_158161731.1\|1041542_1041959_-	hypothetical protein	NA	NA	NA	NA
WP_000157298.1\|1041968_1042193_-	hypothetical protein	NA	NA	NA	NA
WP_158161733.1\|1042204_1042444_-	hypothetical protein	NA	NA	NA	NA
WP_000800334.1\|1042452_1043397_-	AAA family ATPase	M4M9P4	Vibrio_phage	1.1e-126	73.7
WP_158161735.1\|1043423_1045427_-	DDE endonuclease	A0A2I7S9A8	Vibrio_phage	7.4e-271	68.5
WP_060779786.1\|1045438_1045696_-	transcriptional regulator	A0A2I7S995	Vibrio_phage	1.5e-19	64.3
WP_060779830.1\|1046174_1046600_+	S24 family peptidase	A0A2I7S9A5	Vibrio_phage	1.5e-67	82.9

DBSCAN-SWA_4

1712332 : 1718813

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000210577.1\|1712332_1713466_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	8.1e-65	39.6
WP_158162179.1\|1713474_1714728_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.9e-100	48.0
WP_000543542.1\|1714829_1715279_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_158162181.1\|1715291_1716395_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.9e-43	32.2
WP_000493833.1\|1716399_1717053_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.1e-32	37.5
WP_001122868.1\|1717092_1718202_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.4e-63	39.3
WP_000864130.1\|1718342_1718813_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.8e-34	48.7

DBSCAN-SWA_5

2668167 : 2674535

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158162790.1\|2668167_2668869_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	4.9e-36	40.1
WP_148546594.1\|2668937_2669909_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	8.6e-132	72.0
WP_158162990.1\|2669918_2672057_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	9.2e-203	49.9
WP_005522888.1\|2672105_2672513_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	R4JF54	Bacillus_phage	2.4e-11	35.5
WP_000705934.1\|2672509_2672728_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.6e-14	55.9
WP_158162791.1\|2672860_2673268_-	cysteine desulfuration protein SufE	NA	NA	NA	NA
WP_158162792.1\|2673272_2674535_-	SufS family cysteine desulfurase	A0A2K9L2Y3	Tupanvirus	6.3e-66	33.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP046826

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

32289 : 76592

Vibrio_phage(64.0%)

protease,terminase,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158163021.1\|32289_35046_+\|protease	M6 family metalloprotease PrtV	NA	NA	NA	NA
WP_000586212.1\|35146_36793_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.2e-22	30.2
WP_158163022.1\|37116_39351_-	hemolysin	NA	NA	NA	NA
WP_158163023.1\|40138_41389_+	thermolabile hemolysin	NA	NA	NA	NA
WP_158163024.1\|41516_42587_+	diguanylate cyclase	G3MA91	Bacillus_virus	3.7e-11	29.3
WP_148538641.1\|42577_42844_-	hypothetical protein	NA	NA	NA	NA
WP_080551339.1\|43070_44315_+	multidrug efflux MFS transporter EmrD	NA	NA	NA	NA
WP_082320936.1\|44710_46300_+	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA
WP_158163025.1\|46369_47380_-	hypothetical protein	NA	NA	NA	NA
WP_158163026.1\|47507_49460_+	ATP-binding protein	W8CYF6	Bacillus_phage	7.3e-05	24.6
WP_158163027.1\|49494_51036_-	DUF3369 domain-containing protein	NA	NA	NA	NA
WP_158163028.1\|51254_53252_+	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.3e-17	28.6
WP_158163029.1\|53269_53797_-	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA
WP_000400318.1\|53899_54730_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.0e-57	46.3
WP_000967510.1\|54980_56309_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_158163030.1\|56504_57899_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.1e-47	36.7
WP_158163031.1\|58495_60049_+	DUF4041 domain-containing protein	A0A142LP25	Marinitoga_camini_virus	7.0e-75	62.9
WP_158163032.1\|61297_62929_-	hypothetical protein	A0A160DHT6	Vibrio_phage	2.8e-308	97.6
WP_000457680.1\|62925_63399_-	hypothetical protein	U3PDI0	Vibrio_phage	1.1e-76	99.4
WP_158163033.1\|63386_64280_-	hypothetical protein	U3PIM3	Vibrio_phage	6.2e-153	95.3
WP_158163034.1\|64282_64807_-\|tail	phage tail protein	A9ZT45	Vibrio_virus	3.5e-87	91.4
WP_158163035.1\|66605_67265_-\|tail	phage tail protein	U3PB79	Vibrio_phage	4.1e-125	99.1
WP_158163036.1\|67261_68461_-	hypothetical protein	U3PDH5	Vibrio_phage	2.5e-221	99.0
WP_001113003.1\|68457_68790_-	DUF2590 family protein	U3PIM1	Vibrio_phage	1.7e-55	100.0
WP_158163037.1\|68779_70594_-\|tail	phage tail tape measure protein	U3PFL8	Vibrio_phage	0.0e+00	99.5
WP_158163038.1\|70790_71072_-	hypothetical protein	A9ZT39	Vibrio_virus	9.7e-44	96.8
WP_148496129.1\|71279_71621_-	hypothetical protein	U3PB75	Vibrio_phage	1.1e-49	96.5
WP_158163039.1\|71595_72183_-	glycoside hydrolase family protein	U3PDH1	Vibrio_phage	8.2e-77	67.7
WP_001899725.1\|72169_72382_-	hypothetical protein	U3PIL8	Vibrio_phage	5.6e-28	85.5
WP_114742987.1\|72378_72588_-	TraR/DksA family transcriptional regulator	U3PFL5	Vibrio_phage	1.5e-28	89.6
WP_158163040.1\|72602_73061_-	DUF2597 family protein	U3PCG7	Vibrio_phage	1.2e-80	97.4
WP_158163041.1\|74170_74830_-	phage virion morphogenesis protein	U3PDG7	Vibrio_phage	3.8e-115	99.1
WP_148516800.1\|74816_75305_-	hypothetical protein	U3PIL4	Vibrio_phage	1.1e-87	98.1
WP_000493401.1\|75301_75763_-\|head	head completion/stabilization protein	U3PFL1	Vibrio_phage	1.5e-78	100.0
WP_158163042.1\|75869_76592_-\|terminase	terminase	U3PCG2	Vibrio_phage	2.5e-120	93.0

DBSCAN-SWA_2

80477 : 90174

Vibrio_phage(100.0%)

portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158163043.1\|80477_81500_+\|portal	phage portal protein	U3PFK6	Vibrio_phage	1.7e-186	92.0
WP_158163044.1\|81496_82183_-	hypothetical protein	Q8HA44	Vibrio_phage	3.6e-108	85.2
WP_158163045.1\|82762_83266_+	hypothetical protein	NA	NA	NA	NA
WP_001263193.1\|83380_83632_+	ogr/Delta-like zinc finger family protein	Q8HA54	Vibrio_phage	7.3e-43	97.6
WP_001280811.1\|83626_83845_-	hypothetical protein	Q8HA64	Vibrio_phage	1.2e-30	98.6
WP_158163046.1\|84044_86630_-	replication endonuclease	A0A166YHE2	Vibrio_phage	0.0e+00	98.3
WP_061051025.1\|86668_86956_+	hypothetical protein	NA	NA	NA	NA
WP_158163047.1\|87154_87382_-	hypothetical protein	U3PIK2	Vibrio_phage	1.9e-26	69.3
WP_158163048.1\|87381_87963_-	hypothetical protein	U3PB56	Vibrio_phage	1.1e-57	67.4
WP_001272765.1\|88043_88478_-	hypothetical protein	U3PDF0	Vibrio_phage	2.8e-74	100.0
WP_158163049.1\|88490_89030_-	transcriptional regulator	U3PIJ8	Vibrio_phage	8.0e-95	98.9
WP_000959091.1\|89140_89353_-	hypothetical protein	U3PFJ1	Vibrio_phage	3.2e-23	78.6
WP_158163050.1\|89520_90174_+	chromosome partitioning protein ParA	A0A166YHA0	Vibrio_phage	1.7e-78	70.4

DBSCAN-SWA_3

898045 : 904428

Vibrio_phage(90.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158139805.1\|898045_898234_-	hypothetical protein	Q64EU9	Vibrio_phage	5.5e-11	67.9
WP_158163378.1\|898242_899616_-	toxin	Q64EV0	Vibrio_phage	1.1e-196	76.4
WP_001160094.1\|899618_899963_-	DUF2523 domain-containing protein	G8IRV0	Vibrio_phage	4.8e-53	86.0
WP_158163379.1\|899962_901378_-	hypothetical protein	G8IRU9	Vibrio_phage	7.2e-95	48.3
WP_158163380.1\|901508_901718_-	hypothetical protein	G8IRU8	Vibrio_phage	1.3e-13	59.4
WP_154114463.1\|901751_901946_-	hypothetical protein	G8IRU7	Vibrio_phage	5.1e-20	73.0
WP_000974869.1\|901991_902330_-	DUF1293 domain-containing protein	Q858R2	Vibrio_phage	9.8e-51	89.3
WP_158163534.1\|902329_903439_-	replication initiation factor family protein	Q64EV8	Vibrio_phage	2.8e-211	95.6
WP_158163381.1\|903641_903890_-	hypothetical protein	O56843	Vibrio_virus	4.6e-21	66.7
WP_158163382.1\|904071_904428_+	regulator	Q9MCC3	Vibrio_phage	2.4e-31	63.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046825

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP046826

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection