CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046824	Vibrio mimicus strain 06-2455 chromosome 2, complete sequence	0 crisprs	cas3,csa3	0	0	2	0
NZ_CP046823	Vibrio mimicus strain 06-2455 chromosome 1, complete sequence	0 crisprs	DEDDh,WYL,DinG,csa3,RT,cas3,csx1	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

492853 : 525132

Vibrio_phage(40.0%)

integrase,transposase,head

attL 519852:519866|attR 525157:525171

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000610762.1\|492853_494500_-	hypothetical protein	H9EB45	Vibrio_phage	1.8e-28	23.3
WP_000540782.1\|494499_495429_-	hypothetical protein	NA	NA	NA	NA
WP_000863486.1\|495428_496295_-	hypothetical protein	NA	NA	NA	NA
WP_158121150.1\|496279_499252_-	tape measure protein	A0A2I2L6P9	Escherichia_phage	9.7e-17	22.7
WP_001200696.1\|499248_499578_-	hypothetical protein	NA	NA	NA	NA
WP_000472884.1\|499583_499916_-	hypothetical protein	NA	NA	NA	NA
WP_000087144.1\|499954_500872_-	hypothetical protein	G8EY04	Synechococcus_phage	6.6e-33	33.8
WP_001050344.1\|500881_501319_-	hypothetical protein	NA	NA	NA	NA
WP_000271676.1\|501330_501735_-	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	8.0e-07	33.1
WP_127913572.1\|501737_502169_-	hypothetical protein	A0A0C4UQZ0	Shigella_phage	1.3e-07	31.8
WP_001198206.1\|502229_503129_-\|head	head protein	A0SMP3	Pseudomonas_virus	3.6e-76	49.2
WP_032479705.1\|503131_503518_-	hypothetical protein	NA	NA	NA	NA
WP_000845566.1\|503519_504629_-	hypothetical protein	A0A0C4UQU6	Shigella_phage	3.9e-64	42.3
WP_000455730.1\|504685_505681_-	hypothetical protein	NA	NA	NA	NA
WP_000929398.1\|505914_506373_-	phage virion morphogenesis protein	J9SNH3	Pseudomonas_phage	1.4e-20	36.4
WP_000039943.1\|506372_506564_-	hypothetical protein	NA	NA	NA	NA
WP_032479704.1\|506576_507992_-	hypothetical protein	A0A2H4IYU7	uncultured_Caudovirales_phage	3.5e-65	48.8
WP_000634491.1\|507991_509539_-	DUF935 domain-containing protein	J9SVY0	Pseudomonas_phage	3.7e-129	50.1
WP_032470586.1\|509547_511104_-	hypothetical protein	A0A2I7S9C5	Vibrio_phage	1.5e-165	62.3
WP_000818342.1\|511100_511679_-	DUF3486 family protein	NA	NA	NA	NA
WP_001162663.1\|511687_511978_-	hypothetical protein	A0A2I7S9D8	Vibrio_phage	5.0e-27	65.3
WP_000801962.1\|511977_512313_-	DUF2730 family protein	NA	NA	NA	NA
WP_001286513.1\|512321_512525_-	hypothetical protein	NA	NA	NA	NA
WP_001121001.1\|512521_513118_-	hypothetical protein	M4MB79	Vibrio_phage	1.5e-49	60.2
WP_000533384.1\|513093_513366_-	hypothetical protein	A0A2I7S9C2	Vibrio_phage	3.5e-22	58.3
WP_001259553.1\|513366_513804_-	hypothetical protein	M4M9N1	Vibrio_phage	3.5e-48	60.7
WP_001095956.1\|514012_514423_-	hypothetical protein	A0A0C4UQZ9	Shigella_phage	9.2e-19	38.0
WP_001071821.1\|514883_515372_-	hypothetical protein	M4MHH2	Vibrio_phage	1.1e-50	65.7
WP_156874691.1\|515552_516131_-	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	3.3e-30	39.6
WP_000440545.1\|516284_516593_-	hypothetical protein	A0A2I7S9C8	Vibrio_phage	1.6e-07	68.9
WP_000749526.1\|516678_516888_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_000172412.1\|516913_517540_-	DUF3164 family protein	M4MHH7	Vibrio_phage	1.3e-64	64.0
WP_000947388.1\|517536_517725_-	hypothetical protein	NA	NA	NA	NA
WP_000368744.1\|517709_517961_-	hypothetical protein	NA	NA	NA	NA
WP_000219977.1\|518021_518567_-	helix-turn-helix transcriptional regulator	A0A1B0T6G8	Thiobacimonas_phage	3.7e-07	32.3
WP_127913571.1\|518550_519072_-	hypothetical protein	NA	NA	NA	NA
WP_000791090.1\|519155_519887_-	ATP-binding protein	A0A1B0T6H3	Thiobacimonas_phage	8.7e-20	30.2
519852:519866	attL	NA	NA	NA	NA
WP_001031666.1\|520020_522267_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	M4T586	Rhodobacter_phage	6.4e-45	24.2
WP_000993029.1\|522740_523418_+	XRE family transcriptional regulator	A0A1C6ZDG7	Pseudomonas_phage	2.1e-23	30.9
WP_000684083.1\|523965_525132_+	nucleotide sugar dehydrogenase	O41091	Paramecium_bursaria_Chlorella_virus	6.1e-108	51.7
525157:525171	attR	NA	NA	NA	NA

DBSCAN-SWA_2

794813 : 820187

Vibrio_phage(56.25%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158121152.1\|794813_796013_-	zonula occludens toxin ZOT	A0A0N9HE81	Vibrio_phage	1.1e-237	99.5
WP_000979342.1\|796009_796303_-	accessory cholera enterotoxin	A0A0F6YNQ7	Vibrio_phage	3.7e-46	100.0
WP_158121153.1\|796299_797583_-	hypothetical protein	A0A142I701	Vibrio_phage	1.8e-217	98.4
WP_000493022.1\|797593_797842_-	colonization factor	A0A0N7F140	Vibrio_phage	8.8e-33	100.0
WP_001888513.1\|797977_798358_-	hypothetical protein	A0A0N9HJ67	Vibrio_phage	4.0e-69	100.0
WP_000743997.1\|798335_799415_-	hypothetical protein	U5TQR3	Satellite_phage	2.2e-213	100.0
WP_158121154.1\|799546_799882_+	helix-turn-helix domain-containing protein	A0A0N9HJE7	Vibrio_phage	1.4e-52	99.1
WP_158121155.1\|800070_800262_+	hypothetical protein	NA	NA	NA	NA
WP_001911005.1\|800388_800541_+	hypothetical protein	B1B6U1	Vibrio_virus	2.6e-19	96.0
WP_158121152.1\|800555_801755_-	zonula occludens toxin ZOT	A0A0N9HE81	Vibrio_phage	1.1e-237	99.5
WP_000979342.1\|801751_802045_-	accessory cholera enterotoxin	A0A0F6YNQ7	Vibrio_phage	3.7e-46	100.0
WP_158121153.1\|802041_803325_-	hypothetical protein	A0A142I701	Vibrio_phage	1.8e-217	98.4
WP_000493022.1\|803335_803584_-	colonization factor	A0A0N7F140	Vibrio_phage	8.8e-33	100.0
WP_001888513.1\|803719_804100_-	hypothetical protein	A0A0N9HJ67	Vibrio_phage	4.0e-69	100.0
WP_000743997.1\|804077_805157_-	hypothetical protein	U5TQR3	Satellite_phage	2.2e-213	100.0
WP_158121154.1\|805288_805624_+	helix-turn-helix domain-containing protein	A0A0N9HJE7	Vibrio_phage	1.4e-52	99.1
WP_158121155.1\|805812_806004_+	hypothetical protein	NA	NA	NA	NA
WP_001911005.1\|806130_806283_+	hypothetical protein	B1B6U1	Vibrio_virus	2.6e-19	96.0
WP_000593520.1\|806391_806766_-	cholera enterotoxin binding subunit CtxB	A0A142I6Y1	Vibrio_phage	3.0e-64	99.2
WP_005514365.1\|806762_807539_-	cholera enterotoxin catalytic subunit CtxA	A0A023W6A1	Vibrio_virus	5.1e-151	99.2
WP_000979342.1\|808833_809127_-	accessory cholera enterotoxin	A0A0F6YNQ7	Vibrio_phage	3.7e-46	100.0
WP_005514363.1\|809123_810407_-	hypothetical protein	A0A0N9HEV0	Vibrio_phage	2.2e-212	99.3
WP_001890610.1\|810800_811184_-	hypothetical protein	F1CC65	Vibrio_virus	4.8e-70	100.0
WP_005514354.1\|811161_812241_-	hypothetical protein	U5TQR3	Satellite_phage	5.5e-212	99.4
WP_000201563.1\|812371_812551_+	hypothetical protein	Q9MBU8	Vibrio_virus	6.4e-25	100.0
WP_080553812.1\|813082_813235_+	lipoate--protein ligase	B1B6U1	Vibrio_virus	3.8e-18	92.0
WP_000593520.1\|813343_813718_-	cholera enterotoxin binding subunit CtxB	A0A142I6Y1	Vibrio_phage	3.0e-64	99.2
WP_005514365.1\|813714_814491_-	cholera enterotoxin catalytic subunit CtxA	A0A023W6A1	Vibrio_virus	5.1e-151	99.2
WP_000021613.1\|814590_815790_-	zonula occludens toxin ZOT	C9EH18	Vibrio_virus	3.2e-237	99.0
WP_000979342.1\|815786_816080_-	accessory cholera enterotoxin	A0A0F6YNQ7	Vibrio_phage	3.7e-46	100.0
WP_000493024.1\|817369_817618_-	hypothetical protein	A0A0N7F140	Vibrio_phage	1.7e-31	97.6
WP_001890610.1\|817753_818137_-	hypothetical protein	F1CC65	Vibrio_virus	4.8e-70	100.0
WP_000201563.1\|819323_819503_+	hypothetical protein	Q9MBU8	Vibrio_virus	6.4e-25	100.0
WP_080553812.1\|820034_820187_+	lipoate--protein ligase	B1B6U1	Vibrio_virus	3.8e-18	92.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP046823

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

580693 : 588004

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080553815.1\|580693_581485_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.2e-69	53.3
WP_000002984.1\|581477_582104_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.8e-37	52.7
WP_000189384.1\|582103_583039_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	4.6e-05	34.7
WP_000116730.1\|583112_584123_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	1.0e-34	34.2
WP_000982058.1\|584199_586788_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	1.7e-33	25.0
WP_001279359.1\|587116_588004_-	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	3.2e-56	41.1

DBSCAN-SWA_2

821896 : 829027

Faustovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000775248.1\|821896_823111_+	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	1.1e-32	30.8
WP_000331703.1\|823147_823531_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
WP_000301571.1\|823591_823915_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.0e-25	50.5
WP_001105752.1\|823963_824479_+	co-chaperone HscB	NA	NA	NA	NA
WP_001196546.1\|824502_826353_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	5.3e-106	41.1
WP_001124187.1\|826366_826705_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_000872176.1\|826753_826948_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_000107227.1\|827105_828395_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	3.8e-34	34.0
WP_001162851.1\|828598_829027_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.3e-20	38.4

DBSCAN-SWA_3

1738271 : 1744640

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001087276.1\|1738271_1738973_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-36	40.1
WP_000879043.1\|1739042_1740014_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	4.3e-131	71.7
WP_005521129.1\|1740023_1742162_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	2.1e-202	49.7
WP_000055478.1\|1742210_1742618_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	R4JF54	Bacillus_phage	1.9e-11	33.1
WP_000705934.1\|1742614_1742833_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.6e-14	55.9
WP_000187309.1\|1742965_1743373_-	cysteine desulfuration protein SufE	NA	NA	NA	NA
WP_001281792.1\|1743377_1744640_-	SufS family cysteine desulfurase	A0A2K9L2Y3	Tupanvirus	8.2e-66	33.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046824

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP046823

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection