CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046851	Grimontia hollisae strain F9489 chromosome 1, complete sequence	1 crisprs	DinG,WYL,csx1,DEDDh,cas3,cas6f,cas7f,cas5f,csa3,RT	0	6	7	0
NZ_CP046850	Grimontia hollisae strain F9489 chromosome 2, complete sequence	0 crisprs	csa3,cas3,WYL	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046851_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046851_1

1538362-1538570

Unclear

Consensus_repeat	Method
TTTCTCAGCTACCTATGCGGCAGGACAC	CRISPRCasFinder
TTTCTCAGCTACCTATGCGGCAGGACACT	CRT
TTTCTCAGCTACCTATGCGGCAGGACACT	PILER-CR

3 spacers

cas6f,cas7f,cas5f

The CRISPR arrays of NZ_CP046851_1

>merge|NZ_CP046851|1|1538362-1538570|CRISPRCasFinder,CRT,PILER-CR
TATCTCAACTACCTATGCGGCAGGACACTAATTCGCCTCTCGACTGTCCATTCCCTCCCATTTCTCAGCTACCTGTGCGGCAGGACACTCAGTCGAGCTGGAATATCATTGCCGCTGACTTTTCTCAGCTACCTATGCGGCAGGACACTTTTAAAGGATACGGAGGGGATGTCACACAAATTTCTCAGCTACCTATGCGGCAGGACACC

>NZ_CP046851|1|1|1538362-1538569|CRISPRCasFinder
TATCTCAACTACCTATGCGGCAGGACAC	TAATTCGCCTCTCGACTGTCCATTCCCTCCCA
TTTCTCAGCTACCTGTGCGGCAGGACAC	TCAGTCGAGCTGGAATATCATTGCCGCTGACT
TTTCTCAGCTACCTATGCGGCAGGACAC	TTTTAAAGGATACGGAGGGGATGTCACACAAA
TTTCTCAGCTACCTATGCGGCAGGACAC

>NZ_CP046851|1|1|1538362-1538570|CRT
TATCTCAACTACCTATGCGGCAGGACACT	AATTCGCCTCTCGACTGTCCATTCCCTCCCA
TTTCTCAGCTACCTGTGCGGCAGGACACT	CAGTCGAGCTGGAATATCATTGCCGCTGACT
TTTCTCAGCTACCTATGCGGCAGGACACT	TTTAAAGGATACGGAGGGGATGTCACACAAA
TTTCTCAGCTACCTATGCGGCAGGACACC

>NZ_CP046851|1|1|1538364-1538570|PILER-CR
TCTCAACTACCTATGCGGCAGGACACTAA	TTCGCCTCTCGACTGTCCATTCCCTCCCATT
TCTCAGCTACCTGTGCGGCAGGACACTCA	GTCGAGCTGGAATATCATTGCCGCTGACTTT
TCTCAGCTACCTATGCGGCAGGACACTTT	TAAAGGATACGGAGGGGATGTCACACAAATT
TCTCAGCTACCTATGCGGCAGGACACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046851.1\|WP_158174878.1\|1529446_1529746_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046851.1\|WP_158174877.1\|1521698_1523660_-\|RecQ-family-ATP-dependent-DNA-helicase	unknown	unknown	gnl\|CDD\|223588
NZ_CP046851.1\|WP_158175232.1\|1546207_1547218_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|377533
NZ_CP046851.1\|WP_158174881.1\|1535334_1535847_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046851.1\|WP_158174884.1\|1538698_1539301_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|187870
NZ_CP046851.1\|WP_158174886.1\|1540344_1542411_-\|hypothetical-protein	cas5f	cd09736_cas5f_CAS-I-F	gnl\|CDD\|187867
NZ_CP046851.1\|WP_154124099.1\|1525474_1526518_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP046851.1\|WP_158174883.1\|1537394_1537823_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046851.1\|WP_158174889.1\|1545812_1546115_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP046851.1\|WP_158174885.1\|1539297_1540335_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09737_cas7f_CAS-I-F	gnl\|CDD\|187868
NZ_CP046851.1\|WP_158174879.1\|1532228_1533983_-\|DUF87-domain-containing-protein	unknown	unknown	gnl\|CDD\|223510
NZ_CP046851.1\|WP_158174782.1\|1528300_1529323_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_CP046851.1\|WP_158174887.1\|1542410_1543142_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046851.1\|WP_114995843.1\|1550093_1550828_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046851.1\|WP_158174888.1\|1544186_1545521_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|284995
NZ_CP046851.1\|WP_158174882.1\|1536471_1537398_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376406
NZ_CP046851.1\|WP_158174880.1\|1533984_1535127_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379106
NZ_CP046851.1\|WP_158174890.1\|1547226_1549107_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NZ_CP046851.1\|WP_158174891.1\|1549103_1549730_-\|endonuclease	unknown	unknown	gnl\|CDD\|378037
NZ_CP046851.1\|WP_115659867.1\|1526937_1527954_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077

Protein	Function_ID	Function_description	E-value
NZ_CP046851.1\|WP_158174877.1\|1521698_1523660_-\|RecQ-family-ATP-dependent-DNA-helicase	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	5.64241e-133
NZ_CP046851.1\|WP_158175232.1\|1546207_1547218_-\|AAA-family-ATPase	gnl\|CDD\|377533	pfam05621, TniB, Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.	4.10355e-14
NZ_CP046851.1\|WP_115659867.1\|1526937_1527954_-\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.10321e-35
NZ_CP046851.1\|WP_158174884.1\|1538698_1539301_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	2.94053e-46
NZ_CP046851.1\|WP_158174886.1\|1540344_1542411_-\|hypothetical-protein	gnl\|CDD\|187867	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	1.99765e-27
NZ_CP046851.1\|WP_154124099.1\|1525474_1526518_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	5.72177e-21
NZ_CP046851.1\|WP_158174889.1\|1545812_1546115_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.90043e-14
NZ_CP046851.1\|WP_158174885.1\|1539297_1540335_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|187868	cd09737, Csy3_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas7 ortholog.	8.24199e-99
NZ_CP046851.1\|WP_158174879.1\|1532228_1533983_-\|DUF87-domain-containing-protein	gnl\|CDD\|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	1.51315e-29
NZ_CP046851.1\|WP_158174782.1\|1528300_1529323_-\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.97748e-40
NZ_CP046851.1\|WP_158174882.1\|1536471_1537398_+\|hypothetical-protein	gnl\|CDD\|376406	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C.	3.81181e-17
NZ_CP046851.1\|WP_158174888.1\|1544186_1545521_+\|hypothetical-protein	gnl\|CDD\|284995	pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.	6.48172e-32
NZ_CP046851.1\|WP_158174890.1\|1547226_1549107_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.07215e-12
NZ_CP046851.1\|WP_158174891.1\|1549103_1549730_-\|endonuclease	gnl\|CDD\|378037	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The N terminal domain of TnsA is catalytic.	6.95731e-10
NZ_CP046851.1\|WP_158174880.1\|1533984_1535127_-\|hypothetical-protein	gnl\|CDD\|379106	pfam13289, SIR2_2, SIR2-like domain. This family of proteins are related to the sirtuins.	3.8367e-06

>NZ_CP046851.1|WP_158174883.1|1537394_1537823_+|hypothetical-protein
MRLITTLALLMALTSCSTQAKYSDEVMYEMASILKDVSQAIDGELKWGKTEELSQEEIISSATSTNPNQIPELKVLAQEAKVANYQLLHEFQGDNAVMLICDGNVALMEDAGCNAEFDMIYWKSPRSNTCSINLDAAAICSN
>NZ_CP046851.1|WP_158174882.1|1536471_1537398_+|hypothetical-protein
MPGAFAHITAVNVASANNALMKLNMPREAKKALAQNKRYLELGCVSPDYPYLDLMDSAQNKWADEMHYNNVGKLISSLVLQVKSVNSEHHEKAFAWLCGFVAHVAADITIHPVVEMKVGPYAENAKAHRVCEMNQDAYIWSSRLNLGDIGMADRVKENIGSCVDVNDDSSIDPIINDIWHTALNAVYSDYANECQPNINAWHKGFQTVVDNAEESHRLFPWARHVASKQGLTYPLHEEVDTTFIESLETPDGTKHYDEVFDKAIETIQLFWEQTAAAVFEGAETDFFKNWNLDTGRCENGQLTAWGNQ
>NZ_CP046851.1|WP_158174881.1|1535334_1535847_-|hypothetical-protein
MARDIDDGDCNRYWDLHWNNQLGIRYHMHMQRYYERLGRFITAFSLVTSSTAFAVLFGTNSALAKYLAAMVAMAQTLELVIDTKGKSSMHNSLRQRYIQLDSLIAGKSSITVDEERVCLEKRASIEIDEPPVINSLMDKCHNEVAKVKGLDVEHFTVMGRWSSCVAFWYS
>NZ_CP046851.1|WP_158174880.1|1533984_1535127_-|hypothetical-protein
MAFDTGILKQKEFSDAIDKLEELLSHSKAVLLGAGASFCAGLPLTNQLTERALKSDKLSVDSKQILTAIQNSFAGANPAAHIEDYLSELVDWLAITARRTYRNVNASSVSIAGTEYSNDQLLQAIDEIKIAIFEVINVEVDSAVHERFVRALHRPMRPGKDSLPSTIDYLVMNYDTLIEDSLALSQLRYADGLEGGVSGWWNPSTFEQNNLDARVFKLHGSINWAEHASSSTPLRVAPHLKRSQDLAAKIMIWPASTKYRETQLDPYANLMHRARSVLNPRGGSQRVLLITGYSFGDAHINLEIERGLRASNGNLTVIAFTSDPEPSGVLQTWYEDSAINEQVLIFADKGFYHADNKASSENSIEWWKFENLTQILEGGF
>NZ_CP046851.1|WP_158174879.1|1532228_1533983_-|DUF87-domain-containing-protein
MDNKYIKPIENLSIGKIIEVDGSRIIAELDPTISDLSRVFAGENYPIGQFGSIIKVHFGRRSIYGLVSRLRMKADYQLEKGLPIASSDERIIEADLFGEGEWRRKGADEFALEFERGVATYPLPQQTIYLTPKSELRFIYGDAKGAVIQLGEHVGSGGAPCYAELNELLGKHTAILGSTGAGKSGTVAAVIHSILERGQIANHEHWHPQIIILDPHNEYGKAFPEHQRLSTDEGSLKLPYWLLDLEESLSLFIGKTEFAATSQSNIVKNALIAVREQAAEQLELDKNQLTVDSPVPYVLGDPTGMDNFGKKQGVLYEEGLIGEINKQRPNNQNQAQHEDYNKVIRKVSSLLKDGRLRFMMEGWDGAEDPLPTIVNQFLTQQTTVQIVDLSGVPNEVAGVATAAIARIVFQLKIWQTEAERQNSPVLLVCEEAHRYVPNRGEAQYEAAQSAIRRIAKEGRKYGVGLLLVSQRPSEVEATVLSQCNSWIVLRITNDSDREHVRSVLPDSMSGLTKMLSGLRRQEAIFVGQAATLPTRVMIRSLPNEKLPRSNDVDFEKGWQQQAMTLEQIQEVVSMWRYQSRTQPA
>NZ_CP046851.1|WP_158174878.1|1529446_1529746_+|hypothetical-protein
MKVLNKAASFLTRRRKKSFEELNDWLLAVIGMSAFLVAGYWGLMLSEVVPEFIKIVNGNGISMTAVSLAILLGGFGISVWFFGCIAARCHTLLYERWFK
>NZ_CP046851.1|WP_158174782.1|1528300_1529323_-|IS110-family-transposase
MSSHFFCGVDLAKHHFSLHAVDDRGKVILHKSVSRAKLLTTLANMPPMRIGIEACSGAHYWAREFIKLGHDARVMAAKYVGPYRTKGKNDLNDAIAICEAVQRPNTRFVPVKSPERQAILSIHRMREHWVQERTALINRIRALLAEFGIVIPTGRHAIQRDVPLILEAADYGLPDIARAVLGDSFEHLQVLNQRIDDTELCFDIVTKASPNAQRILKVRGIGPQTATAIIATIGKGEQFDSGRDFAAWLGLVPKQYSTGGKPRLGRISKRGDKYLRTLLVHGARAAITNLGEKQDRLSVWARDILERRGMNRAIVALAAKNARIIWALLHNQTDYQDYAA
>NZ_CP046851.1|WP_115659867.1|1526937_1527954_-|IS110-family-transposase
MTQHNIIGIDLAKSVFYLFEINQNGKNVGRHKITRNKLLQCIANKPCATIAMEACSSAHYWAREFSKLGHSVILYPPQHVKKQRRKQKNDYNDAEAIAEVALIGRAFPVQAKSIAQQDVQSLIRMRRLLVSERTRMINQIRGLIAEYGIVIPVGKSAFCKAIPHILEDADNQLSSIMRELIHCQFERYHELNEQIDWFDRKLEQTAKSFDNAQRLMTIPGYGTITSQAVAVWLGSGEQFHNGRDASAAMGLVPKQDTTGGKVQLLGITKTGNTYIRSLLIHGARAALRRAKFKSDKFSKWMLEVAERRGPNRAAVAIANKLMRIAWAIITKKETYQPA
>NZ_CP046851.1|WP_154124099.1|1525474_1526518_-|IS110-family-transposase
MRFYNQQHDYYCGIDLHARILYVCIVDSAGNTVLHKKIDANPDALLDVLAPFQDQIVVGVECMHCWYWVSDLCLDYAFDFVLGHALYMKAIHGGKTKNDRIDSYKIASLLRGGNFPLAYVYPKAMRATRDLLRRRTKIMRHGADLKAHVSNTFSQYNHSAPNLQLRYPYAREEVRNRFNEPAINRNLDIDLNVIAFYTKELASVEHFIEQNAKQHNPQDYQLLQTVPGIGRILALTILYEIGNIQRFPTVQQFASYSRLIKCKAESAGKQYGTNGNKIGNAHLKWAFSEAAVLYLRGNKKAKKYLNRLQKRMSKAKALSALAHKLGRCVYFMLRNKTVFDEQKFLPE
>NZ_CP046851.1|WP_158174877.1|1521698_1523660_-|RecQ-family-ATP-dependent-DNA-helicase
MQTGSAYLQTLHQVFGFESLRGGQQRVVEAVLGGHSAAAIFPTGSGKSLCYQLPALHLPHLTLVISPLLALMKDQLDFLRSKGIAAASIDSSLTYDESREVMRSVKAGETKILMISVERLKNERFRQFIASVPISLLVVDEAHCISEWGHNFRPDYLKLPAYRTQLNIPQVLLLTATATPQVIEDMRNKFGIAQERVVVTGFYRQNLDLNVIPCAENNKAAALLELLQRAPQFQPTIVYVTLQQTAESVAAMLGTNGIAAQAYHAGMASEDRQRIQDGFMRGDIHCIVATIAFGMGVDKADIRAVIHYDLPKSIENYSQEIGRAGRDGLQSVCTVLANRESVSVLENFVYGDTPDRIAIRAVIDDIGATPPGSTWEVMLTRLSKESNVRQLPLKTLLVYLELAGIIEPQYSYFADYRFKMLVDAGQVLNQFEGERRQFVEAIFQCSPKSRTWHSVDFDALWQGYQSDRKRAVTALDYFAEKGWIALESKQMTDVYRVINPARCQGALAIELCREMHSLFLSKEASEIGRVHAMLSLFETDTCLSHRLAEYFADEHAPAQCGHCSVCRGNIALLPRAAVQENIVPAELQRLLQPLLEAASKEGVAVSAEAATRFLCGIATPLTGRLRAGKMEGFGKLAAYPFAQVKEQVAAMGV
>NZ_CP046851.1|WP_158174884.1|1538698_1539301_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MKRYYFVITYLPEQASQEILAGRCISTLHDFLVFHHIGGIGVGFPRWTEQSLGNQIMFCSSNQQRMSQLHQSQYFTMMLEQGLFAITDVEPVPADTAEVRFYRNQGIAKLFTGEKRRRLERAKRRAAERGEVFDPERIGSNQPIGIFHRILMDSQSTQQRFVLHVQKENVAEVSDAEFNGYGLATNQTYRGTVPDIRILI
>NZ_CP046851.1|WP_158174885.1|1539297_1540335_-|type-I-F-CRISPR-associated-protein-Csy3
MELCTQLSYQGSLRPSKGVFFYEEADGTMKPLPIDQDAIVGQKCSYSEAYQPNGSPKNLQPQDLAFGNPVRRESCYVPPTVDNIVCRFSLRVEANSLSPFVCNSQSVGEVLRGLAAAYQKAGGYDVLARRYCKNLLLGQWLWRNQRSMGLSITVATSAGNEYRIDNVLHLDWHEPWKDDSQKVLNGLTGELASALSGEEPFWFADIKANVSASFMQEIFPSQLFSDSKDGSNLGREYAKVRSGDGQIWPSLNAEKIGAAIQLIDDWWADEADKRLRVHEYGGDKEYLIAHRIPSSGIDAYSLLKSVDEKAAQLEGLKCSDEIPSDIHYLMAILVKGGLFQKSRSA
>NZ_CP046851.1|WP_158174886.1|1540344_1542411_-|hypothetical-protein
MMKTLRDVLEDEETDIALRKAFAAYSELVDVTGEETQTLIVLLNLTLKRDEVESLTSRKSAKAILKDEAHTDSCLEEVRWLHTHNLKYPDTRVQAQRILCGDMPLITGALGSANCERRLGWSHNSSQVNKAKLFCSGFVWEGSSTCLAECVIKNSDVWRRAFRELGLTKTKFDEWRLKLEQVINTEHFPSVVSDYSKQVRFPWLNDYLAITPVVSGAVLAKIQQLHTQRLGRFRQVNHSHPASVGDLASSKGGGVSVLNYPLNIAWRNQASLSQSWIRQVESNKSVFNQGAVLNKRFVGVLDSFIHLDEEPVLRRRRRRRVSSVRQLRRALAEWLLPMMEWRDSLRDGADTLPAIRETERALLTEPLADNSKLLKLANQRLHATLQDAGYRKTEYAYHPKLLEPVRNQLRWILDTLGNAQSVPIDTQFEVIHLDNLRVFDALSLANPYLVGIPSLTALWGFVHAFERKLKALLGCEFAFDSVAWHVRESSSVSGLKLPSLTLERKRSDYLKRPGIVESTHCDLVMDLAIRVHSTESFLQTRDELVDLIKAALPSRFAGGVIHPPSLYESKDWCSLRTTQSLHEHVSRLPATGRWIVPTTTTPKSFENLCELIELNTDLKPVMVGYQLLEEPTERPNSVASLHAYAEPLIGLCDCKSSIDIRLKGEKYFNANCFWKLETATSSILMRRA
>NZ_CP046851.1|WP_158174887.1|1542410_1543142_-|hypothetical-protein
MVDYLKSENITECECGFDLKNAPTQKADPVRVLLSCLTVGDTFDFDKTALGQCNQSTRFGALLWYRLEFVGDLEGDEINVEGLSGAIGFFKKWPESFHAAIDRRLTTWEVSRYIEYNHTPFRKIFGDVLLHSSRLPSKDLSQNFVLRELLAYLSHLVLRHPKSKMANVGDVLLTLSETVSLLSTSYEQVERLYQEGFLKLTYRPHQQTTIPPHKPAFRLRNVIELGVARMQTDVSSDVYLPAW
>NZ_CP046851.1|WP_158174888.1|1544186_1545521_+|hypothetical-protein
MRLTVPELQINDDEGFSTEKDLFHRKQFGDRLYNLINNSDENLVLALDAQWGEGKSTFIKMWSGENRHKQEPPLETIYFDAFENDYQKEPFLALASEIYELLEDKAESKKQEFKEKAAQVFKTFSRGVIKTGIRLGTAGIIDGTVLEQAEKDISTLVSEQVDSIISSKFESSKADKLALKNFKEFLSDVALNHTPGKRIVFVIDELDRCRPDFALDLLENIKHLFSVSGITFLLVMNRKQLEESVKCRYGDGIDSVTYLQKFINVWLSLPRSSGKYQQDDGAKYLMTSFDLMAAGKRIHNETAVKMLESLVKHLKPSFRDIERILTYFAIIENSRNEPMIEYYQDMMALVCFMKVVNPRMLDAIISKRATGQELLDFLRISDGSDYSEKYALEYLATQIEFDLASEERRHEIQESNLLNFRHGLAPSKVIDYFYQELNNIQPVR
>NZ_CP046851.1|WP_158174889.1|1545812_1546115_-|helix-turn-helix-domain-containing-protein
MESPFPTRLRAARKAAGMTQQQLGINLGMDPNTASARLNQYEKGKHAPDYQTAKRLADELGVPVAYLYCDDDLLASLLLALAKLPQNKQQELLDDIRADV
>NZ_CP046851.1|WP_158175232.1|1546207_1547218_-|AAA-family-ATPase
MTEEQSVKLKSFLNCFVEYPLLTEIMGDFDRLRQNRLLGGDQQCMLLTGDTGCGKSHLIRYYQSREQYAPNDKFDSSPILVSRIPSKLTLEETVLQLLKDLGQFGTTTRGRSRITTDSSLTHSLVDLLRKKQVELIIINEFQELIEYKSAERRQAIANRLKYISEEAGVPIVLVGMPWAEMIAEEPQWSSRLVTRRSIPYFKLSEDPIHFVQFLKGLAKKMPFDRPPKLEDKKTSISLFAASRGELRALRHLINDAVKDAVLEDEQEFDVQRLCHSFAKLNPQGRNPFDFPLSEMKLSEIEHYSGYNPRAMSNDEALTNRVFSENIPLKELLKKKG
>NZ_CP046851.1|WP_158174890.1|1547226_1549107_-|DDE-type-integrase/transposase/recombinase
MNSSDDDNNLPLFSNEFAPSSSSENKPNSSPPKEPQRLIERDLDSYPAHLKEEAIKRFRLLAFINKNLNGGWTPKNLNPLIQQHFEETGQSDPPKSRVVCNWRKSYELSGGKITALVPKHHRKGNYELKNTGDGAIFHDALERFLNARRPSMTTAYEYYKDQILLSNERIVTGQIEPLSYSGFKKRIKQLPPYQVAVARHGKFMADQWYGYFSAHKPPTRILEKVEIDHTPLDLILIDDELLVPLGRPYLTLLVDVFSSCIVGFHLGYRAPSYDSVSKAIIHATKPKDYIDTISNDFQNDWPCSGKIETLVVDNGAEFWSESLEQACLESGINIQFNPVRKPWLKPFIERLFGTINKKFLDPFPGKTFSNVLEKEEYSPEKDAVIRFSTFIELFHRWIVDVYHQDADSRKSRIPAKLWQQGYEDYPPLAMSQEDIDKLTVVMGVKWQPTLTRLGFKIKHLRYDSPALSEYRKRYPQTESSRKKLVKIDPDDISRIFVYLEELEGYLEVPCEDPIGYTKNLSWHHHQVLSNAHHKFIEGNIDVLSLAKARQAIHQRVMQDQEEFGLLASKKKRKRGQRKLAEFSGVEQGRNSTVALPSQAAEKDTKDERDKGLLDDWDDMISNLDGY
>NZ_CP046851.1|WP_158174891.1|1549103_1549730_-|endonuclease
MYRRNLKHSRVKNLFKFSSLKNNTVLTVESALEFDTCFHLEYCKEIVCFEAQPEGFYYHFEGKKLPYTPDFRVSYEDGREAFLEIKPASKIDGDEFRRKFVGKMEVAKSLGCPLSLVTDNQIRVNPVLYNLKLLHRYTGIVGVNAIQMQLLKVVRASGLVSINDLSQRIHVSSGELKANALALISRGQLQAELNKEKFGMHSVVWVAA
>NZ_CP046851.1|WP_114995843.1|1550093_1550828_-|hypothetical-protein
MWYAVTLTVTAAVMVMGAALSSAFADGDIPLLAFAIPALFFAGAGGVAVWILALGLLGFGAMMPYQPIAISLSLWMILPALVLITGERRNLQVSLLVLSVVIAMECGVLALQGDEKLGGAIGYTLIQILCVTLVWVATYFWKPVRKLTWWPVLLILALVAGGETQGAMFAFCGSALVLALQELQRISREPRSDKLSVVLPAIAFATIVVFPQFSVPNPVFVAWLLLLTTAWLGDYLLNTEHEEE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP046851_1	1.3\|1538510\|32\|NZ_CP046851\|CRISPRCasFinder	1538510-1538541	32	NZ_CP014052	Vibrio alginolyticus strain FDAARGOS_108 plasmid unnamed1, complete sequence	84068-84099	0	1.0
NZ_CP046851_1	1.3\|1538510\|32\|NZ_CP046851\|CRISPRCasFinder	1538510-1538541	32	NZ_KP688397	Vibrio parahaemolyticus strain V36 plasmid pVPH1, complete sequence	180144-180175	0	1.0
NZ_CP046851_1	1.3\|1538510\|32\|NZ_CP046851\|CRISPRCasFinder	1538510-1538541	32	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	153829-153860	0	1.0
NZ_CP046851_1	1.3\|1538510\|32\|NZ_CP046851\|CRISPRCasFinder	1538510-1538541	32	NZ_CP025539	Vibrio harveyi strain 345 plasmid p345-185, complete sequence	57712-57743	0	1.0
NZ_CP046851_1	1.3\|1538510\|32\|NZ_CP046851\|CRISPRCasFinder	1538510-1538541	32	MN865127	Vibrio alginolyticus strain C1579 plasmid pC1579, complete sequence	10528-10559	0	1.0
NZ_CP046851_1	1.3\|1538510\|32\|NZ_CP046851\|CRISPRCasFinder	1538510-1538541	32	NC_025127	Vibrio sp. 04Ya090 plasmid pAQU2 DNA, complete sequence	156613-156644	0	1.0
NZ_CP046851_1	1.3\|1538510\|32\|NZ_CP046851\|CRISPRCasFinder	1538510-1538541	32	NC_016983	Photobacterium damselae subsp. damselae plasmid pAQU1, complete sequence	200009-200040	0	1.0
NZ_CP046851_1	1.3\|1538510\|32\|NZ_CP046851\|CRISPRCasFinder	1538510-1538541	32	NZ_CP034301	Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-2, complete sequence	37856-37887	0	1.0
NZ_CP046851_1	1.3\|1538510\|32\|NZ_CP046851\|CRISPRCasFinder	1538510-1538541	32	KX957970	Vibrio parahaemolyticus plasmid pVPS43, complete sequence	148446-148477	0	1.0
NZ_CP046851_1	1.3\|1538510\|32\|NZ_CP046851\|CRISPRCasFinder	1538510-1538541	32	KX957971	Vibrio parahaemolyticus plasmid pVPS62, complete sequence	137518-137549	0	1.0
NZ_CP046851_1	1.3\|1538510\|32\|NZ_CP046851\|CRISPRCasFinder	1538510-1538541	32	KX957972	Vibrio parahaemolyticus plasmid pVPS91, complete sequence	108073-108104	0	1.0
NZ_CP046851_1	1.3\|1538510\|32\|NZ_CP046851\|CRISPRCasFinder	1538510-1538541	32	KX957968	Vibrio alginolyticus plasmid pVAS19, complete sequence	147511-147542	0	1.0
NZ_CP046851_1	1.3\|1538510\|32\|NZ_CP046851\|CRISPRCasFinder	1538510-1538541	32	KX957969	Vibrio alginolyticus plasmid pVAS114, complete sequence	152321-152352	0	1.0
NZ_CP046851_1	1.6\|1538511\|31\|NZ_CP046851\|CRT	1538511-1538541	31	NZ_KP688397	Vibrio parahaemolyticus strain V36 plasmid pVPH1, complete sequence	180144-180174	0	1.0
NZ_CP046851_1	1.6\|1538511\|31\|NZ_CP046851\|CRT	1538511-1538541	31	NZ_CP025539	Vibrio harveyi strain 345 plasmid p345-185, complete sequence	57712-57742	0	1.0
NZ_CP046851_1	1.6\|1538511\|31\|NZ_CP046851\|CRT	1538511-1538541	31	MN865127	Vibrio alginolyticus strain C1579 plasmid pC1579, complete sequence	10528-10558	0	1.0
NZ_CP046851_1	1.6\|1538511\|31\|NZ_CP046851\|CRT	1538511-1538541	31	NC_025127	Vibrio sp. 04Ya090 plasmid pAQU2 DNA, complete sequence	156613-156643	0	1.0
NZ_CP046851_1	1.6\|1538511\|31\|NZ_CP046851\|CRT	1538511-1538541	31	NC_016983	Photobacterium damselae subsp. damselae plasmid pAQU1, complete sequence	200009-200039	0	1.0
NZ_CP046851_1	1.6\|1538511\|31\|NZ_CP046851\|CRT	1538511-1538541	31	KX957970	Vibrio parahaemolyticus plasmid pVPS43, complete sequence	148446-148476	0	1.0
NZ_CP046851_1	1.6\|1538511\|31\|NZ_CP046851\|CRT	1538511-1538541	31	KX957971	Vibrio parahaemolyticus plasmid pVPS62, complete sequence	137518-137548	0	1.0
NZ_CP046851_1	1.6\|1538511\|31\|NZ_CP046851\|CRT	1538511-1538541	31	KX957972	Vibrio parahaemolyticus plasmid pVPS91, complete sequence	108073-108103	0	1.0
NZ_CP046851_1	1.6\|1538511\|31\|NZ_CP046851\|CRT	1538511-1538541	31	KX957968	Vibrio alginolyticus plasmid pVAS19, complete sequence	147511-147541	0	1.0
NZ_CP046851_1	1.6\|1538511\|31\|NZ_CP046851\|CRT	1538511-1538541	31	KX957969	Vibrio alginolyticus plasmid pVAS114, complete sequence	152321-152351	0	1.0
NZ_CP046851_1	1.6\|1538511\|31\|NZ_CP046851\|CRT	1538511-1538541	31	NZ_CP014052	Vibrio alginolyticus strain FDAARGOS_108 plasmid unnamed1, complete sequence	84069-84099	0	1.0
NZ_CP046851_1	1.6\|1538511\|31\|NZ_CP046851\|CRT	1538511-1538541	31	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	153830-153860	0	1.0
NZ_CP046851_1	1.6\|1538511\|31\|NZ_CP046851\|CRT	1538511-1538541	31	NZ_CP034301	Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-2, complete sequence	37857-37887	0	1.0
NZ_CP046851_1	1.9\|1538513\|31\|NZ_CP046851\|PILER-CR	1538513-1538543	31	NZ_KP688397	Vibrio parahaemolyticus strain V36 plasmid pVPH1, complete sequence	180144-180174	0	1.0
NZ_CP046851_1	1.9\|1538513\|31\|NZ_CP046851\|PILER-CR	1538513-1538543	31	NZ_CP025539	Vibrio harveyi strain 345 plasmid p345-185, complete sequence	57712-57742	0	1.0
NZ_CP046851_1	1.9\|1538513\|31\|NZ_CP046851\|PILER-CR	1538513-1538543	31	MN865127	Vibrio alginolyticus strain C1579 plasmid pC1579, complete sequence	10528-10558	0	1.0
NZ_CP046851_1	1.9\|1538513\|31\|NZ_CP046851\|PILER-CR	1538513-1538543	31	NC_025127	Vibrio sp. 04Ya090 plasmid pAQU2 DNA, complete sequence	156613-156643	0	1.0
NZ_CP046851_1	1.9\|1538513\|31\|NZ_CP046851\|PILER-CR	1538513-1538543	31	NC_016983	Photobacterium damselae subsp. damselae plasmid pAQU1, complete sequence	200009-200039	0	1.0
NZ_CP046851_1	1.9\|1538513\|31\|NZ_CP046851\|PILER-CR	1538513-1538543	31	KX957970	Vibrio parahaemolyticus plasmid pVPS43, complete sequence	148446-148476	0	1.0
NZ_CP046851_1	1.9\|1538513\|31\|NZ_CP046851\|PILER-CR	1538513-1538543	31	KX957971	Vibrio parahaemolyticus plasmid pVPS62, complete sequence	137518-137548	0	1.0
NZ_CP046851_1	1.9\|1538513\|31\|NZ_CP046851\|PILER-CR	1538513-1538543	31	KX957972	Vibrio parahaemolyticus plasmid pVPS91, complete sequence	108073-108103	0	1.0
NZ_CP046851_1	1.9\|1538513\|31\|NZ_CP046851\|PILER-CR	1538513-1538543	31	KX957968	Vibrio alginolyticus plasmid pVAS19, complete sequence	147511-147541	0	1.0
NZ_CP046851_1	1.9\|1538513\|31\|NZ_CP046851\|PILER-CR	1538513-1538543	31	KX957969	Vibrio alginolyticus plasmid pVAS114, complete sequence	152321-152351	0	1.0
NZ_CP046851_1	1.9\|1538513\|31\|NZ_CP046851\|PILER-CR	1538513-1538543	31	NZ_CP014052	Vibrio alginolyticus strain FDAARGOS_108 plasmid unnamed1, complete sequence	84069-84099	0	1.0
NZ_CP046851_1	1.9\|1538513\|31\|NZ_CP046851\|PILER-CR	1538513-1538543	31	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	153830-153860	0	1.0
NZ_CP046851_1	1.9\|1538513\|31\|NZ_CP046851\|PILER-CR	1538513-1538543	31	NZ_CP034301	Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-2, complete sequence	37857-37887	0	1.0
NZ_CP046851_1	1.2\|1538450\|32\|NZ_CP046851\|CRISPRCasFinder	1538450-1538481	32	NZ_AP022849	Bosea sp. ANAM02 plasmid pANAM02, complete sequence	99864-99895	8	0.75
NZ_CP046851_1	1.5\|1538451\|31\|NZ_CP046851\|CRT	1538451-1538481	31	NZ_AP022849	Bosea sp. ANAM02 plasmid pANAM02, complete sequence	99865-99895	8	0.742
NZ_CP046851_1	1.8\|1538453\|31\|NZ_CP046851\|PILER-CR	1538453-1538483	31	NZ_AP022849	Bosea sp. ANAM02 plasmid pANAM02, complete sequence	99865-99895	8	0.742

1. spacer 1.3|1538510|32|NZ_CP046851|CRISPRCasFinder matches to NZ_CP014052 (Vibrio alginolyticus strain FDAARGOS_108 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ttttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
ttttaaaggatacggaggggatgtcacacaaa	Protospacer
********************************

2. spacer 1.3|1538510|32|NZ_CP046851|CRISPRCasFinder matches to NZ_KP688397 (Vibrio parahaemolyticus strain V36 plasmid pVPH1, complete sequence) position: , mismatch: 0, identity: 1.0

ttttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
ttttaaaggatacggaggggatgtcacacaaa	Protospacer
********************************

3. spacer 1.3|1538510|32|NZ_CP046851|CRISPRCasFinder matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 0, identity: 1.0

ttttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
ttttaaaggatacggaggggatgtcacacaaa	Protospacer
********************************

4. spacer 1.3|1538510|32|NZ_CP046851|CRISPRCasFinder matches to NZ_CP025539 (Vibrio harveyi strain 345 plasmid p345-185, complete sequence) position: , mismatch: 0, identity: 1.0

ttttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
ttttaaaggatacggaggggatgtcacacaaa	Protospacer
********************************

5. spacer 1.3|1538510|32|NZ_CP046851|CRISPRCasFinder matches to MN865127 (Vibrio alginolyticus strain C1579 plasmid pC1579, complete sequence) position: , mismatch: 0, identity: 1.0

ttttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
ttttaaaggatacggaggggatgtcacacaaa	Protospacer
********************************

6. spacer 1.3|1538510|32|NZ_CP046851|CRISPRCasFinder matches to NC_025127 (Vibrio sp. 04Ya090 plasmid pAQU2 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

ttttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
ttttaaaggatacggaggggatgtcacacaaa	Protospacer
********************************

7. spacer 1.3|1538510|32|NZ_CP046851|CRISPRCasFinder matches to NC_016983 (Photobacterium damselae subsp. damselae plasmid pAQU1, complete sequence) position: , mismatch: 0, identity: 1.0

ttttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
ttttaaaggatacggaggggatgtcacacaaa	Protospacer
********************************

8. spacer 1.3|1538510|32|NZ_CP046851|CRISPRCasFinder matches to NZ_CP034301 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-2, complete sequence) position: , mismatch: 0, identity: 1.0

ttttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
ttttaaaggatacggaggggatgtcacacaaa	Protospacer
********************************

9. spacer 1.3|1538510|32|NZ_CP046851|CRISPRCasFinder matches to KX957970 (Vibrio parahaemolyticus plasmid pVPS43, complete sequence) position: , mismatch: 0, identity: 1.0

ttttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
ttttaaaggatacggaggggatgtcacacaaa	Protospacer
********************************

10. spacer 1.3|1538510|32|NZ_CP046851|CRISPRCasFinder matches to KX957971 (Vibrio parahaemolyticus plasmid pVPS62, complete sequence) position: , mismatch: 0, identity: 1.0

ttttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
ttttaaaggatacggaggggatgtcacacaaa	Protospacer
********************************

11. spacer 1.3|1538510|32|NZ_CP046851|CRISPRCasFinder matches to KX957972 (Vibrio parahaemolyticus plasmid pVPS91, complete sequence) position: , mismatch: 0, identity: 1.0

ttttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
ttttaaaggatacggaggggatgtcacacaaa	Protospacer
********************************

12. spacer 1.3|1538510|32|NZ_CP046851|CRISPRCasFinder matches to KX957968 (Vibrio alginolyticus plasmid pVAS19, complete sequence) position: , mismatch: 0, identity: 1.0

ttttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
ttttaaaggatacggaggggatgtcacacaaa	Protospacer
********************************

13. spacer 1.3|1538510|32|NZ_CP046851|CRISPRCasFinder matches to KX957969 (Vibrio alginolyticus plasmid pVAS114, complete sequence) position: , mismatch: 0, identity: 1.0

ttttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
ttttaaaggatacggaggggatgtcacacaaa	Protospacer
********************************

14. spacer 1.6|1538511|31|NZ_CP046851|CRT matches to NZ_KP688397 (Vibrio parahaemolyticus strain V36 plasmid pVPH1, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

15. spacer 1.6|1538511|31|NZ_CP046851|CRT matches to NZ_CP025539 (Vibrio harveyi strain 345 plasmid p345-185, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

16. spacer 1.6|1538511|31|NZ_CP046851|CRT matches to MN865127 (Vibrio alginolyticus strain C1579 plasmid pC1579, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

17. spacer 1.6|1538511|31|NZ_CP046851|CRT matches to NC_025127 (Vibrio sp. 04Ya090 plasmid pAQU2 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

18. spacer 1.6|1538511|31|NZ_CP046851|CRT matches to NC_016983 (Photobacterium damselae subsp. damselae plasmid pAQU1, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

19. spacer 1.6|1538511|31|NZ_CP046851|CRT matches to KX957970 (Vibrio parahaemolyticus plasmid pVPS43, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

20. spacer 1.6|1538511|31|NZ_CP046851|CRT matches to KX957971 (Vibrio parahaemolyticus plasmid pVPS62, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

21. spacer 1.6|1538511|31|NZ_CP046851|CRT matches to KX957972 (Vibrio parahaemolyticus plasmid pVPS91, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

22. spacer 1.6|1538511|31|NZ_CP046851|CRT matches to KX957968 (Vibrio alginolyticus plasmid pVAS19, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

23. spacer 1.6|1538511|31|NZ_CP046851|CRT matches to KX957969 (Vibrio alginolyticus plasmid pVAS114, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

24. spacer 1.6|1538511|31|NZ_CP046851|CRT matches to NZ_CP014052 (Vibrio alginolyticus strain FDAARGOS_108 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

25. spacer 1.6|1538511|31|NZ_CP046851|CRT matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

26. spacer 1.6|1538511|31|NZ_CP046851|CRT matches to NZ_CP034301 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-2, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

27. spacer 1.9|1538513|31|NZ_CP046851|PILER-CR matches to NZ_KP688397 (Vibrio parahaemolyticus strain V36 plasmid pVPH1, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

28. spacer 1.9|1538513|31|NZ_CP046851|PILER-CR matches to NZ_CP025539 (Vibrio harveyi strain 345 plasmid p345-185, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

29. spacer 1.9|1538513|31|NZ_CP046851|PILER-CR matches to MN865127 (Vibrio alginolyticus strain C1579 plasmid pC1579, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

30. spacer 1.9|1538513|31|NZ_CP046851|PILER-CR matches to NC_025127 (Vibrio sp. 04Ya090 plasmid pAQU2 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

31. spacer 1.9|1538513|31|NZ_CP046851|PILER-CR matches to NC_016983 (Photobacterium damselae subsp. damselae plasmid pAQU1, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

32. spacer 1.9|1538513|31|NZ_CP046851|PILER-CR matches to KX957970 (Vibrio parahaemolyticus plasmid pVPS43, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

33. spacer 1.9|1538513|31|NZ_CP046851|PILER-CR matches to KX957971 (Vibrio parahaemolyticus plasmid pVPS62, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

34. spacer 1.9|1538513|31|NZ_CP046851|PILER-CR matches to KX957972 (Vibrio parahaemolyticus plasmid pVPS91, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

35. spacer 1.9|1538513|31|NZ_CP046851|PILER-CR matches to KX957968 (Vibrio alginolyticus plasmid pVAS19, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

36. spacer 1.9|1538513|31|NZ_CP046851|PILER-CR matches to KX957969 (Vibrio alginolyticus plasmid pVAS114, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

37. spacer 1.9|1538513|31|NZ_CP046851|PILER-CR matches to NZ_CP014052 (Vibrio alginolyticus strain FDAARGOS_108 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

38. spacer 1.9|1538513|31|NZ_CP046851|PILER-CR matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

39. spacer 1.9|1538513|31|NZ_CP046851|PILER-CR matches to NZ_CP034301 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-2, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaggatacggaggggatgtcacacaaa	CRISPR spacer
tttaaaggatacggaggggatgtcacacaaa	Protospacer
*******************************

40. spacer 1.2|1538450|32|NZ_CP046851|CRISPRCasFinder matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 8, identity: 0.75

tcagtcgagctggaatatcattgccgctgact	CRISPR spacer
tgggtcgggccggaatatcattgccgcaagcg	Protospacer
* .****.**.**************** ..*

41. spacer 1.5|1538451|31|NZ_CP046851|CRT matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 8, identity: 0.742

cagtcgagctggaatatcattgccgctgact	CRISPR spacer
gggtcgggccggaatatcattgccgcaagcg	Protospacer
 .****.**.**************** ..*

42. spacer 1.8|1538453|31|NZ_CP046851|PILER-CR matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 8, identity: 0.742

cagtcgagctggaatatcattgccgctgact	CRISPR spacer
gggtcgggccggaatatcattgccgcaagcg	Protospacer
 .****.**.**************** ..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

662634 : 673302

Tupanvirus(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158174671.1\|662634_664563_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	4.4e-127	36.7
WP_040529049.1\|664566_665112_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	8.2e-15	34.2
WP_005505546.1\|665226_665421_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_005505544.1\|665463_665817_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_005505542.1\|666177_667161_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.2e-35	39.3
WP_005505540.1\|667180_669571_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	4.7e-06	22.7
WP_005505538.1\|669981_670278_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	2.1e-12	38.9
WP_005505537.1\|670450_671500_+	succinylglutamate desuccinylase	NA	NA	NA	NA
WP_040529048.1\|671563_672550_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_114995136.1\|672546_673302_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	1.0e-10	30.3

DBSCAN-SWA_2

884140 : 932160

Vibrio_phage(65.71%)

transposase,holin,tail,plate,head,integrase

attL 879274:879289|attR 918386:918401

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
879274:879289	attL	NA	NA	NA	NA
WP_115659799.1\|884140_885766_-\|holin	glucose-methanol-choline oxidoreductase	A0A1V0S9J5	Catovirus	2.9e-71	34.9
WP_114996376.1\|885777_887391_-	long-chain fatty acid--CoA ligase	Q75ZG1	Hepacivirus	4.9e-47	29.7
WP_040529005.1\|889127_890162_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_104439948.1\|890519_890711_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_005505206.1\|890769_890979_-	hypothetical protein	NA	NA	NA	NA
WP_158174726.1\|891292_892561_+	autoinducer synthase	NA	NA	NA	NA
WP_005505202.1\|892553_895436_+	response regulator	Q6XM27	Feldmannia_irregularis_virus	3.2e-09	37.2
WP_040529002.1\|895500_895839_-	hypothetical protein	NA	NA	NA	NA
WP_158174727.1\|896313_896760_-	hypothetical protein	NA	NA	NA	NA
WP_115659803.1\|896948_897629_-	XRE family transcriptional regulator	A0A1C6ZDG7	Pseudomonas_phage	6.0e-23	29.3
WP_158174728.1\|898106_900332_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0M4U788	Ralstonia_phage	2.6e-38	31.2
WP_115659805.1\|900443_901175_+	ATP-binding protein	M4SPU5	Rhodobacter_phage	2.3e-20	28.9
WP_158174729.1\|901188_901800_+	hypothetical protein	NA	NA	NA	NA
WP_158174730.1\|901796_902366_+	transcriptional regulator	NA	NA	NA	NA
WP_158174731.1\|902431_902665_+	hypothetical protein	NA	NA	NA	NA
WP_158174732.1\|902666_903278_+	DUF3164 family protein	A0A2I7S9B0	Vibrio_phage	2.8e-72	68.5
WP_158174733.1\|903287_903536_+	hypothetical protein	NA	NA	NA	NA
WP_158174734.1\|903593_903806_+	hypothetical protein	NA	NA	NA	NA
WP_158174735.1\|903805_904270_+	DUF1018 domain-containing protein	A0A0C4UQU3	Shigella_phage	3.5e-22	41.5
WP_158174736.1\|904391_904856_+	hypothetical protein	G9L674	Escherichia_phage	2.8e-19	37.1
WP_158174737.1\|904845_905889_+	protein kinase	G9L673	Escherichia_phage	6.5e-69	40.3
WP_158174738.1\|905922_906102_+	hypothetical protein	NA	NA	NA	NA
WP_158174739.1\|906211_906619_+	transcriptional regulator	NA	NA	NA	NA
WP_158174740.1\|906786_907311_+	peptidoglycan-binding protein	A0A2I7S9B9	Vibrio_phage	2.9e-41	48.0
WP_115659816.1\|907929_908154_+	TraR/DksA family transcriptional regulator	M4MHG5	Vibrio_phage	1.4e-08	38.6
WP_158174741.1\|908153_908483_+	DUF2730 family protein	M1Q558	Vibrio_phage	1.5e-08	33.7
WP_158174742.1\|908479_908776_+	ArsR family transcriptional regulator	A0A2I7S9D8	Vibrio_phage	2.8e-25	61.1
WP_158174743.1\|908777_909356_+	DUF3486 family protein	NA	NA	NA	NA
WP_158174744.1\|909352_910939_+	hypothetical protein	A0A2I7S9C5	Vibrio_phage	1.2e-194	70.6
WP_158174745.1\|910948_912505_+	DUF935 family protein	A0A2I7S9K0	Vibrio_phage	1.7e-150	53.6
WP_158174746.1\|912497_913253_+	hypothetical protein	M1PVV7	Vibrio_phage	9.8e-83	59.0
WP_158174747.1\|913374_915021_-	UvrD-helicase domain-containing protein	A0A1V0SAV1	Catovirus	1.6e-16	27.0
WP_158174748.1\|915017_916937_-	AAA family ATPase	NA	NA	NA	NA
WP_158174749.1\|917260_918223_+	peptidase	M1Q578	Vibrio_phage	4.5e-64	41.8
WP_062715026.1\|918229_919117_+\|head	phage head protein	M4MB71	Vibrio_phage	1.1e-109	63.7
918386:918401	attR	NA	NA	NA	NA
WP_158174750.1\|919190_919595_+	hypothetical protein	NA	NA	NA	NA
WP_158174751.1\|919598_920036_+	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	1.2e-27	50.0
WP_158174752.1\|920035_920578_+	phage virion morphogenesis protein	A0A2I7S9D7	Vibrio_phage	9.0e-54	58.7
WP_158174753.1\|920574_921186_+	hypothetical protein	NA	NA	NA	NA
WP_158174754.1\|921182_921377_+	DUF2635 domain-containing protein	A0A2I7S9K4	Vibrio_phage	1.6e-05	41.0
WP_158175225.1\|921367_922846_+\|tail	phage tail protein	M1Q565	Vibrio_phage	2.3e-144	53.3
WP_158174755.1\|922858_923212_+\|tail	phage tail protein	A0A2I7S9D5	Vibrio_phage	1.0e-21	43.5
WP_158174756.1\|923224_923617_+	hypothetical protein	C9DGP9	Escherichia_phage	4.8e-17	45.8
WP_158174757.1\|923727_925503_+	hypothetical protein	A0A2P9JZK0	Alteromonadaceae_phage	5.7e-81	38.4
WP_158174758.1\|925512_926712_+	hypothetical protein	A0A2I7S9E8	Vibrio_phage	7.5e-53	31.5
WP_158174759.1\|926704_927754_+\|tail	phage tail protein	A0A2I7S9G1	Vibrio_phage	3.8e-85	45.9
WP_158174760.1\|927747_928338_+\|plate	phage baseplate assembly protein V	A0A2I7S9F6	Vibrio_phage	7.5e-22	42.4
WP_158174761.1\|928334_928793_+	hypothetical protein	M4MB61	Vibrio_phage	1.8e-23	45.5
WP_158174762.1\|928782_929862_+\|plate	phage baseplate protein	A0A2I7S9E5	Vibrio_phage	1.7e-88	49.3
WP_158174763.1\|929849_930407_+	DUF2313 domain-containing protein	A0A2I7S9L6	Vibrio_phage	8.6e-44	48.7
WP_158174764.1\|930406_931147_+	hypothetical protein	A0A2I7S9H6	Vibrio_phage	4.4e-27	51.3
WP_158174765.1\|931146_932160_+	DUF4376 domain-containing protein	A0A2I7RWL2	Vibrio_phage	2.0e-38	46.2

DBSCAN-SWA_3

1234764 : 1282784

Aeromonas_phage(33.33%)

portal,transposase,bacteriocin,integrase,terminase,capsid

attL 1233138:1233197|attR 1240816:1240995

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1233138:1233197	attL	NA	NA	NA	NA
WP_104439922.1\|1234764_1235418_+\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	2.7e-52	58.4
WP_158174819.1\|1235783_1235975_-	hypothetical protein	NA	NA	NA	NA
WP_158174820.1\|1237600_1239235_-	phosphoethanolamine--lipid A transferase	NA	NA	NA	NA
WP_158174821.1\|1239235_1239595_-	diacylglycerol kinase	NA	NA	NA	NA
WP_158174822.1\|1239883_1240408_-	cytochrome B	NA	NA	NA	NA
WP_158174823.1\|1240400_1240685_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_158174824.1\|1241435_1241972_-	hypothetical protein	NA	NA	NA	NA
1240816:1240995	attR	NA	NA	NA	NA
WP_154124098.1\|1242586_1242874_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_005500649.1\|1242866_1243109_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_158174825.1\|1244124_1245282_+	molecular chaperone	NA	NA	NA	NA
WP_114995772.1\|1246360_1246663_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_005503215.1\|1246650_1246908_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_158174826.1\|1247294_1255226_-	PLxRFG domain-containing protein	M4M9L8	Vibrio_phage	8.8e-166	37.7
WP_158161002.1\|1255249_1256572_-	hypothetical protein	NA	NA	NA	NA
WP_158161000.1\|1256581_1256821_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_158160999.1\|1256831_1257203_-	hypothetical protein	A0A2L1IV89	Escherichia_phage	5.6e-15	44.5
WP_158174827.1\|1257212_1257869_-	hypothetical protein	A0A1I9KFE8	Aeromonas_phage	8.3e-38	44.0
WP_158162297.1\|1257879_1258281_-	hypothetical protein	NA	NA	NA	NA
WP_158160997.1\|1258282_1258630_-	hypothetical protein	NA	NA	NA	NA
WP_158174828.1\|1258633_1260388_-	DUF1983 domain-containing protein	A0A0H4IPM2	Shigella_phage	3.9e-42	31.0
WP_158160995.1\|1260389_1262003_-	hypothetical protein	A0A1I9KFD2	Aeromonas_phage	5.1e-129	46.9
WP_158174829.1\|1261996_1262275_-	hypothetical protein	NA	NA	NA	NA
WP_158174830.1\|1262280_1262589_-	hypothetical protein	NA	NA	NA	NA
WP_158174831.1\|1262585_1263206_-	hypothetical protein	A0A1B1ITG1	uncultured_Mediterranean_phage	1.4e-15	31.2
WP_158160993.1\|1263205_1263808_-	hypothetical protein	NA	NA	NA	NA
WP_158160992.1\|1263807_1264248_-	hypothetical protein	A0A1I9KFH0	Aeromonas_phage	2.5e-14	45.7
WP_158174832.1\|1264278_1264662_-	hypothetical protein	NA	NA	NA	NA
WP_158160989.1\|1264707_1265922_-\|capsid	N4-gp56 family major capsid protein	A0A088CC32	Shigella_phage	2.4e-139	58.8
WP_158160987.1\|1265986_1266928_-	hypothetical protein	A0A1I9KFD1	Aeromonas_phage	2.6e-24	30.4
WP_158174833.1\|1267024_1269646_-	hypothetical protein	A0A2I7QSB0	Vibrio_phage	5.2e-139	36.3
WP_158162295.1\|1269647_1270010_-	hypothetical protein	NA	NA	NA	NA
WP_158174834.1\|1270019_1272089_-\|portal	portal protein	A0A1U9AJF2	Stx1_converting_phage	2.8e-204	57.4
WP_158160983.1\|1272089_1273754_-\|terminase	terminase	A0A1I9KFB6	Aeromonas_phage	1.3e-247	72.6
WP_158160982.1\|1273769_1274519_-	hypothetical protein	A0A1I9KFG9	Aeromonas_phage	1.0e-31	35.4
WP_158160980.1\|1274696_1274879_-	hypothetical protein	NA	NA	NA	NA
WP_158160978.1\|1274881_1275286_-	hypothetical protein	A0A2I7R6R1	Vibrio_phage	2.0e-13	37.7
WP_158160976.1\|1275285_1275765_-	M15 family peptidase	A0A2D1GMU0	Marinobacter_phage	7.2e-31	47.4
WP_158174835.1\|1276804_1277434_+	recombinase family protein	NA	NA	NA	NA
WP_158174836.1\|1277444_1277789_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_158174837.1\|1277800_1278049_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_158174838.1\|1278679_1279234_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_115659927.1\|1279519_1279903_-	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_158174839.1\|1280484_1280679_+	hypothetical protein	NA	NA	NA	NA
WP_158174840.1\|1280681_1281539_+	hypothetical protein	I6PD67	Cronobacter_phage	6.9e-24	29.2
WP_158161006.1\|1281575_1282784_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.4e-75	71.0

DBSCAN-SWA_4

1292752 : 1301467

Enterobacteria_phage(22.22%)

integrase

attL 1279810:1279824|attR 1302997:1303011

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1279810:1279824	attL	NA	NA	NA	NA
WP_158162291.1\|1292752_1293079_-	DUF1364 family protein	A0A2I7RNU4	Vibrio_phage	6.6e-20	44.9
WP_158160965.1\|1293081_1293669_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	1.4e-44	44.1
WP_158160963.1\|1293784_1294117_-	hypothetical protein	NA	NA	NA	NA
WP_158160961.1\|1294129_1294756_-	hypothetical protein	Q3HQZ7	Burkholderia_phage	1.1e-34	38.2
WP_158174844.1\|1294761_1295502_-	hypothetical protein	A0A1W6JNM1	Staphylococcus_phage	2.0e-11	49.3
WP_158174845.1\|1295841_1296234_-	hypothetical protein	NA	NA	NA	NA
WP_158174846.1\|1296202_1296490_-	hypothetical protein	NA	NA	NA	NA
WP_158175228.1\|1296609_1297281_+	helix-turn-helix domain-containing protein	Q37946	Enterobacteria_phage	5.2e-11	29.4
WP_158160954.1\|1297479_1297854_+	hypothetical protein	NA	NA	NA	NA
WP_158160952.1\|1297858_1298800_+	hypothetical protein	A0A192Y5Z5	Salmonella_phage	7.5e-40	50.9
WP_158174847.1\|1298805_1299798_+	hypothetical protein	A0A1B0VN89	Pseudomonas_phage	1.8e-07	26.9
WP_158174848.1\|1299857_1300265_+	hypothetical protein	A0A2L1IV39	Escherichia_phage	9.8e-13	46.7
WP_158160946.1\|1300236_1300464_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_158162287.1\|1300492_1301467_+\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	1.7e-103	58.5
1302997:1303011	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2233962 : 2289342

Salinivibrio_phage(51.43%)

portal,tail,head,integrase,terminase,tRNA,capsid

attL 2245548:2245588|attR 2282497:2282537

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158174995.1\|2233962_2234970_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_002542007.1\|2234992_2235289_+	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
WP_005501102.1\|2235424_2235703_-	pyrimidine/purine nucleoside phosphorylase	NA	NA	NA	NA
WP_158174996.1\|2235874_2236291_-	Zn(2+)-responsive transcriptional regulator	NA	NA	NA	NA
WP_158174997.1\|2236471_2238082_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	4.4e-72	49.4
WP_158174998.1\|2238135_2239425_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_158174999.1\|2239453_2240170_-	DUF1481 domain-containing protein	NA	NA	NA	NA
WP_002542017.1\|2240212_2240485_-	DNA-binding protein HU-alpha	A7KV42	Bacillus_phage	4.5e-22	62.2
WP_158175000.1\|2240720_2241899_+	DUF21 domain-containing protein	NA	NA	NA	NA
WP_005501119.1\|2241958_2242546_-	DUF416 family protein	NA	NA	NA	NA
WP_158175001.1\|2242639_2243545_+	D-2-hydroxyacid dehydrogenase	A0A1B1IVB5	uncultured_Mediterranean_phage	6.0e-10	28.1
WP_158175238.1\|2243565_2244129_+	uracil-DNA glycosylase family protein	NA	NA	NA	NA
WP_114996047.1\|2244308_2245373_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA
2245548:2245588	attL	NA	NA	NA	NA
WP_114996048.1\|2245743_2246784_-\|integrase	tyrosine-type recombinase/integrase	U3PIJ4	Vibrio_phage	7.2e-84	47.4
WP_158175002.1\|2246951_2247221_-	hypothetical protein	NA	NA	NA	NA
WP_158175003.1\|2247217_2247820_-	transcriptional regulator	A0A1D9C9M6	Salinivibrio_phage	1.8e-39	42.4
WP_005501125.1\|2248030_2248231_+	hypothetical protein	P79674	Haemophilus_phage	5.1e-07	47.3
WP_158175004.1\|2248344_2248884_+	hypothetical protein	NA	NA	NA	NA
WP_158175005.1\|2248896_2249268_+	hypothetical protein	U3PDF0	Vibrio_phage	1.8e-13	38.4
WP_158175006.1\|2249330_2249609_+	hypothetical protein	NA	NA	NA	NA
WP_158175007.1\|2249605_2249797_+	hypothetical protein	NA	NA	NA	NA
WP_158175008.1\|2249909_2250389_+	hypothetical protein	NA	NA	NA	NA
WP_158175009.1\|2250385_2250616_+	hypothetical protein	A0A2I7RNG5	Vibrio_phage	3.5e-15	50.0
WP_158175010.1\|2250612_2253147_+	replication endonuclease	A0A1D9C9P3	Salinivibrio_phage	2.0e-228	54.5
WP_158175011.1\|2253508_2253955_-	transcriptional regulator	A0A1D9C9Q3	Salinivibrio_phage	1.7e-34	51.7
WP_158175012.1\|2254613_2255270_-	hypothetical protein	NA	NA	NA	NA
WP_158175239.1\|2255256_2256240_-	AAA family ATPase	NA	NA	NA	NA
WP_158175013.1\|2257380_2258037_+	hypothetical protein	A0A0U4J920	Pseudomonas_phage	1.4e-53	54.9
WP_158175014.1\|2258239_2258737_-	hypothetical protein	NA	NA	NA	NA
WP_158175015.1\|2258856_2259357_-	hypothetical protein	NA	NA	NA	NA
WP_158175016.1\|2259368_2260814_-	hypothetical protein	NA	NA	NA	NA
WP_158175017.1\|2261239_2262280_-\|portal	phage portal protein	A0A1D9C9P9	Salinivibrio_phage	2.9e-133	66.6
WP_158175018.1\|2262282_2264070_-\|terminase	terminase	A0A1D9C9R1	Salinivibrio_phage	1.0e-239	73.5
WP_158175019.1\|2264247_2265162_+\|capsid	capsid protein	A0A1D9CA10	Salinivibrio_phage	1.2e-82	56.4
WP_158175020.1\|2265162_2266155_+\|capsid	phage major capsid protein, P2 family	R9TPZ5	Vibrio_phage	4.0e-116	61.6
WP_158175021.1\|2266165_2266888_+\|terminase	terminase	A0A2I7RNJ0	Vibrio_phage	6.5e-60	50.0
WP_158175022.1\|2266996_2267404_+\|head	head completion/stabilization protein	A0A1D9C9U4	Salinivibrio_phage	4.7e-39	63.7
WP_158175023.1\|2267403_2267889_+\|tail	phage tail protein	A0A2I7RNH2	Vibrio_phage	3.3e-47	57.3
WP_158161704.1\|2267872_2268535_+	virion morphogenesis protein	A0A1D9C9S1	Salinivibrio_phage	1.9e-77	68.6
WP_158175024.1\|2268537_2269653_+	DUF2586 family protein	A0A1D9C9S8	Salinivibrio_phage	4.6e-153	70.9
WP_005501151.1\|2269656_2270106_+	DUF2597 family protein	A0A1D9C9S0	Salinivibrio_phage	7.4e-54	67.8
WP_158175025.1\|2270335_2270758_+	hypothetical protein	M4M9N1	Vibrio_phage	5.5e-43	59.0
WP_158175026.1\|2270762_2271287_+	hypothetical protein	A0A1L5C2C2	Pseudoalteromonas_phage	1.6e-23	38.1
WP_158175027.1\|2271287_2271563_+	hypothetical protein	NA	NA	NA	NA
WP_158175028.1\|2271559_2271826_+	hypothetical protein	A0A1D9C9R9	Salinivibrio_phage	5.8e-22	60.5
WP_158175029.1\|2272014_2273904_+\|tail	phage tail tape measure protein	A0A2I7RNI7	Vibrio_phage	6.4e-232	67.5
WP_158175030.1\|2273900_2274233_+	DUF2590 family protein	A0A1D9C9T2	Salinivibrio_phage	1.1e-38	72.2
WP_158175031.1\|2274225_2275410_+	hypothetical protein	A0A1D9C9S2	Salinivibrio_phage	3.2e-136	58.7
WP_158175032.1\|2275413_2276034_+	hypothetical protein	A0A1D9C9U8	Salinivibrio_phage	4.3e-76	67.3
WP_158175033.1\|2276053_2277418_+	hypothetical protein	A0A1D9C9T0	Salinivibrio_phage	2.0e-110	69.4
WP_158175034.1\|2277414_2277966_+	hypothetical protein	NA	NA	NA	NA
WP_158175035.1\|2277966_2278506_+	adenine glycosylase	A0A1D9C9T7	Salinivibrio_phage	8.9e-46	59.7
WP_158175036.1\|2278502_2279189_+	hypothetical protein	A0A1D9CA29	Salinivibrio_phage	1.4e-83	60.8
WP_158175037.1\|2279179_2279914_+	hypothetical protein	A0A1D9C9S3	Salinivibrio_phage	1.4e-97	71.8
WP_050778517.1\|2280880_2281456_+	iron-containing redox enzyme family protein	NA	NA	NA	NA
WP_005501186.1\|2281445_2282198_+	class I SAM-dependent methyltransferase	A0A2K9L4K8	Tupanvirus	6.3e-05	29.2
WP_005501187.1\|2282206_2282416_+	hypothetical protein	NA	NA	NA	NA
WP_005501189.1\|2282542_2283313_-	NAD(+) diphosphatase	NA	NA	NA	NA
2282497:2282537	attR	NA	NA	NA	NA
WP_158175038.1\|2283455_2283935_+	sigma D regulator	NA	NA	NA	NA
WP_005501193.1\|2284202_2284934_-	nicotinamide riboside transporter PnuC	A0A2I7SAC7	Vibrio_phage	6.3e-18	26.2
WP_005501195.1\|2285127_2289342_-	DNA-directed RNA polymerase subunit beta'	A0A2I7QNZ7	Vibrio_phage	1.2e-65	26.5

DBSCAN-SWA_6

3038106 : 3049096

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005501877.1\|3038106_3038856_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.2e-70	53.5
WP_005501875.1\|3038866_3039487_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.5e-36	47.0
WP_114996138.1\|3039497_3040466_+	murein hydrolase activator NlpD	NA	NA	NA	NA
WP_158175144.1\|3040520_3041489_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	1.5e-35	34.6
WP_158175145.1\|3041571_3044142_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	2.7e-31	25.7
WP_005501867.1\|3044865_3045909_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	3.5e-115	62.2
WP_005501866.1\|3045932_3046358_+	regulatory protein RecX	NA	NA	NA	NA
WP_114996136.1\|3046513_3049096_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.3e-78	37.9

DBSCAN-SWA_7

3299316 : 3335351

Salinivibrio_phage(46.88%)

portal,tail,head,integrase,terminase,capsid

attL 3302721:3302736|attR 3336037:3336052

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005506716.1\|3299316_3301044_-	phosphoenolpyruvate-protein phosphotransferase PtsI	A0A1V0SGR7	Hokovirus	1.3e-18	26.0
WP_005506715.1\|3301098_3301356_-	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_005506714.1\|3301674_3302643_-	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	7.6e-72	52.4
3302721:3302736	attL	NA	NA	NA	NA
WP_115659486.1\|3302857_3303883_-\|integrase	tyrosine-type recombinase/integrase	A0A1S6L016	Salmonella_phage	7.5e-94	51.3
WP_158175177.1\|3303972_3304662_-	transcriptional regulator	A0A1D9C9M6	Salinivibrio_phage	5.2e-30	36.9
WP_114994845.1\|3304789_3305011_+	helix-turn-helix domain-containing protein	R9TMQ7	Vibrio_phage	4.2e-10	51.4
WP_005501126.1\|3305124_3305664_+	hypothetical protein	NA	NA	NA	NA
WP_114996051.1\|3305675_3306047_+	hypothetical protein	U3PDF0	Vibrio_phage	5.8e-12	36.2
WP_005501128.1\|3306108_3306387_+	hypothetical protein	NA	NA	NA	NA
WP_005501129.1\|3306383_3306614_+	hypothetical protein	A0A2I7RNG5	Vibrio_phage	1.3e-14	48.7
WP_158175178.1\|3306610_3308914_+	hypothetical protein	A0A2I7RNF8	Vibrio_phage	1.7e-40	30.5
WP_158175179.1\|3308916_3309513_+	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	1.6e-43	53.8
WP_158175180.1\|3309888_3310335_-	transcriptional regulator	A0A1D9C9Q3	Salinivibrio_phage	1.0e-34	52.3
WP_158175181.1\|3310873_3311281_-	hypothetical protein	NA	NA	NA	NA
WP_158175182.1\|3311258_3312101_-	hypothetical protein	NA	NA	NA	NA
WP_158175244.1\|3312310_3313318_+	DNA-processing protein DprA	NA	NA	NA	NA
WP_158175183.1\|3313329_3314577_+	phosphoribosyl transferase	NA	NA	NA	NA
WP_158175245.1\|3314958_3316545_-	funZ protein	P79669	Escherichia_phage	6.7e-158	52.1
WP_158175184.1\|3316754_3317795_-\|portal	phage portal protein	A0A1D9C9P9	Salinivibrio_phage	1.0e-122	62.8
WP_158175185.1\|3317797_3319585_-\|terminase	terminase	A0A1D9C9R1	Salinivibrio_phage	2.6e-235	69.2
WP_158175186.1\|3319763_3320606_+\|capsid	phage capsid protein	A0A2I7RNH1	Vibrio_phage	5.5e-34	41.8
WP_158175187.1\|3320606_3321599_+\|capsid	phage major capsid protein, P2 family	R9TPZ5	Vibrio_phage	8.8e-116	61.3
WP_158175188.1\|3321609_3322332_+\|terminase	terminase	A0A2I7RNJ0	Vibrio_phage	1.7e-60	50.2
WP_158175189.1\|3322436_3322844_+\|head	head completion/stabilization protein	A0A1D9C9U4	Salinivibrio_phage	4.7e-39	64.4
WP_158175190.1\|3322843_3323329_+\|tail	phage tail protein	A0A2I7RNH2	Vibrio_phage	1.0e-48	58.0
WP_158175191.1\|3323312_3323975_+	virion morphogenesis protein	A0A1D9C9S1	Salinivibrio_phage	2.4e-77	67.3
WP_158175192.1\|3323977_3325093_+	DUF2586 family protein	A0A1D9C9S8	Salinivibrio_phage	2.5e-151	70.1
WP_158175193.1\|3325096_3325546_+	DUF2597 family protein	A0A1D9C9S0	Salinivibrio_phage	9.7e-54	67.8
WP_158175194.1\|3325551_3325779_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_158175195.1\|3325775_3326198_+	hypothetical protein	M4M9N1	Vibrio_phage	1.5e-43	59.7
WP_158175196.1\|3326202_3326727_+	hypothetical protein	A0A1L5C2C2	Pseudoalteromonas_phage	1.1e-24	39.3
WP_005501161.1\|3326727_3327003_+	hypothetical protein	NA	NA	NA	NA
WP_104439913.1\|3326996_3327266_+	hypothetical protein	A0A1D9C9R9	Salinivibrio_phage	9.0e-23	59.6
WP_158175197.1\|3327454_3329341_+\|tail	phage tail tape measure protein	A0A2I7RNI7	Vibrio_phage	9.9e-233	67.9
WP_158175198.1\|3329337_3329670_+	DUF2590 family protein	A0A1D9C9T2	Salinivibrio_phage	8.5e-39	72.2
WP_158175199.1\|3329662_3330847_+	hypothetical protein	A0A1D9C9S2	Salinivibrio_phage	7.0e-136	58.4
WP_158175200.1\|3330850_3331471_+	hypothetical protein	A0A1D9C9U8	Salinivibrio_phage	8.1e-75	66.3
WP_158175201.1\|3331490_3332855_+	hypothetical protein	A0A1D9C9T0	Salinivibrio_phage	5.8e-110	69.0
WP_158175202.1\|3332851_3333403_+	hypothetical protein	NA	NA	NA	NA
WP_158175203.1\|3333403_3333943_+	adenine glycosylase	A0A2I7RNK5	Vibrio_phage	4.7e-39	58.0
WP_158175204.1\|3333939_3334626_+	hypothetical protein	A0A1D9CA29	Salinivibrio_phage	5.6e-85	60.8
WP_158175205.1\|3334616_3335351_+	hypothetical protein	A0A1D9C9S3	Salinivibrio_phage	1.9e-99	73.1
3336037:3336052	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage