CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP039263	Lactobacillus johnsonii strain DC22.2 plasmid pLjDC22.2_2, complete sequence	0 crisprs	NA	0	0
NZ_CP039262	Lactobacillus johnsonii strain DC22.2 plasmid pLjDC22.2_1, complete sequence	0 crisprs	NA	0	0
NZ_CP039265	Lactobacillus johnsonii strain DC22.2 plasmid pLjDC22.2_4, complete sequence	0 crisprs	NA	0	0
NZ_CP039264	Lactobacillus johnsonii strain DC22.2 plasmid pLjDC22.1_3, complete sequence	0 crisprs	NA	0	0
NZ_CP039261	Lactobacillus johnsonii strain DC22.2 chromosome, complete genome	2 crisprs	cas14k,cas2,cas3,cas14j,c2c9_V-U4,RT,DEDDh,DinG,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	19	8

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP039261_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039261_1

1117511-1117843

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
GGATCATCTCCACATACGTGGAGAATAC	CRISPRCasFinder
GGATCATCTCCACATACGTGGAGAATAC	CRT
GGATCATCTCCACATACGTGGAGAATAC	PILER-CR

5 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP039261_1

>merge|NZ_CP039261|1|1117511-1117843|CRISPRCasFinder,CRT,PILER-CR
AATTTACCTCCACATACGTGGAGAATACGAGATCACGTTAGAACAATGCCAAGAACTAATAGGATCATCTCCACATACGTGGAGAATACCAGATCCTAAGGAAGGCTTAAGTAAAGAAGTAGGGATCATCTCCACATACGTGGAGAATACTGTGCAATTTTTGCTTTCTCTTTGATTTTTTAAGGATCATCTCCACATACGTGGAGAATACCACATCTTGCATGTATTCGTTAGCGTGGATATAGGATCATCTCCACATACGTGGAGAATACGGTCTAATTGCTTCAGATAGCTGTACGACAGCGGGATCATCTCCACATACGTGGAGAATAC

>NZ_CP039261|1|1|1117511-1117843|CRISPRCasFinder
AATTTACCTCCACATACGTGGAGAATAC	GAGATCACGTTAGAACAATGCCAAGAACTAATA
GGATCATCTCCACATACGTGGAGAATAC	CAGATCCTAAGGAAGGCTTAAGTAAAGAAGTAG
GGATCATCTCCACATACGTGGAGAATAC	TGTGCAATTTTTGCTTTCTCTTTGATTTTTTAA
GGATCATCTCCACATACGTGGAGAATAC	CACATCTTGCATGTATTCGTTAGCGTGGATATA
GGATCATCTCCACATACGTGGAGAATAC	GGTCTAATTGCTTCAGATAGCTGTACGACAGCG
GGATCATCTCCACATACGTGGAGAATAC

>NZ_CP039261|1|1|1117511-1117843|CRT
AATTTACCTCCACATACGTGGAGAATAC	GAGATCACGTTAGAACAATGCCAAGAACTAATA
GGATCATCTCCACATACGTGGAGAATAC	CAGATCCTAAGGAAGGCTTAAGTAAAGAAGTAG
GGATCATCTCCACATACGTGGAGAATAC	TGTGCAATTTTTGCTTTCTCTTTGATTTTTTAA
GGATCATCTCCACATACGTGGAGAATAC	CACATCTTGCATGTATTCGTTAGCGTGGATATA
GGATCATCTCCACATACGTGGAGAATAC	GGTCTAATTGCTTCAGATAGCTGTACGACAGCG
GGATCATCTCCACATACGTGGAGAATAC

>NZ_CP039261|1|1|1117572-1117843|PILER-CR
GGATCATCTCCACATACGTGGAGAATAC	CAGATCCTAAGGAAGGCTTAAGTAAAGAAGTAG
GGATCATCTCCACATACGTGGAGAATAC	TGTGCAATTTTTGCTTTCTCTTTGATTTTTTAA
GGATCATCTCCACATACGTGGAGAATAC	CACATCTTGCATGTATTCGTTAGCGTGGATATA
GGATCATCTCCACATACGTGGAGAATAC	GGTCTAATTGCTTCAGATAGCTGTACGACAGCG
GGATCATCTCCACATACGTGGAGAATAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039261.1\|WP_158172808.1\|1111804_1111984_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039261.1\|WP_087712925.1\|1119739_1120387_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP039261.1\|WP_157662328.1\|1122213_1122801_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP039261.1\|WP_143445803.1\|1109519_1109633_+\|type-I-toxin-antitoxin-system-Fst-family-toxin	unknown	unknown	gnl\|CDD\|372839
NZ_CP039261.1\|WP_087285405.1\|1130597_1131023_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|214906
NZ_CP039261.1\|WP_087712924.1\|1120398_1121109_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP039261.1\|WP_158172380.1\|1114371_1114563_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039261.1\|WP_158172381.1\|1117914_1118793_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_CP039261.1\|WP_158172379.1\|1113933_1114281_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|286689
NZ_CP039261.1\|WP_158172378.1\|1111403_1111796_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|153447
NZ_CP039261.1\|WP_158172376.1\|1110613_1111048_-\|HK97-gp10-family-phage-protein	unknown	unknown	gnl\|CDD\|377415
NZ_CP039261.1\|WP_158172383.1\|1129466_1130384_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320699
NZ_CP039261.1\|WP_012846301.1\|1116328_1117429_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP039261.1\|WP_158172382.1\|1122829_1124515_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP039261.1\|WP_087712923.1\|1121089_1122211_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP039261.1\|WP_069168440.1\|1112367_1113591_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP039261.1\|WP_158172377.1\|1111044_1111407_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039261.1\|WP_158172375.1\|1110212_1110617_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039261.1\|WP_087712926.1\|1118798_1119737_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP039261.1\|WP_087712920.1\|1124507_1127258_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031

Protein	Function_ID	Function_description	E-value
NZ_CP039261.1\|WP_158172383.1\|1129466_1130384_-\|M48-family-metalloprotease	gnl\|CDD\|320699	cd07340, M48B_Htpx_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase. This HtpX family of peptidase M48 subfamily B includes uncharacterized HtpX homologs and consists of proteins smaller than Ste24p, with homology restricted to the C-terminal half of Ste24p. HtpX expression is controlled by the Cpx stress response system, which senses abnormal membrane proteins. HtpX participates in the proteolytic quality control of these misfolded proteins by undergoing self-degradation and collaborating with FtsH, a membrane-bound and ATP-dependent protease, to eliminate them. HtpX, a zinc metalloprotease with an active site motif HEXXH, has an FtsH-like topology, and is capable of introducing endoproteolytic cleavages into SecY (also an FtsH substrate). However, HtpX does not have an ATPase activity and will only act against cytoplasmic regions of a target membrane protein. Thus, HtpX and FtsH have overlapping and/or complementary functions, which are especially important at high temperature; in E. coli and Xylella fastidiosa, HtpX is heat-inducible, while in Streptococcus gordonii it is not.	4.08459e-101
NZ_CP039261.1\|WP_087712925.1\|1119739_1120387_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	8.6235e-75
NZ_CP039261.1\|WP_143445803.1\|1109519_1109633_+\|type-I-toxin-antitoxin-system-Fst-family-toxin	gnl\|CDD\|372839	pfam13955, Fst_toxin, Toxin Fst, type I toxin-antitoxin system. Fst (faecalis plasmid stabilization toxin), also known as RNA I, is a toxic peptide. Its N-terminus forms a transmembrane alpha helix, its C-terminus is disordered and is likely to be cytosolic. Its translation is inhibited by the antisense RNA, RNA II, which acts as an antitoxin.	0.00325557
NZ_CP039261.1\|WP_087285405.1\|1130597_1131023_-\|restriction-endonuclease	gnl\|CDD\|214906	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. HIRAN is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this protein functions as a DNA-binding domain that probably recognises features associated with damaged DNA or stalled replication forks.	6.03519e-19
NZ_CP039261.1\|WP_087712924.1\|1120398_1121109_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.31131e-55
NZ_CP039261.1\|WP_158172381.1\|1117914_1118793_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	1.17557e-40
NZ_CP039261.1\|WP_158172379.1\|1113933_1114281_-\|hypothetical-protein	gnl\|CDD\|286689	pfam09639, YjcQ, YjcQ protein. YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is expressed in bacteria and also in viruses. It appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown. However, it is thought to be a prophage head protein in viruses.	8.54753e-18
NZ_CP039261.1\|WP_158172378.1\|1111403_1111796_-\|hypothetical-protein	gnl\|CDD\|153447	cd08055, gp15, Head-Tail Connector Protein gp15 of Bacteriophage SPP1 and similar proteins. The bacteriophage SPP1 gp15 protein is critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. It forms a dodecameric ring structure that comprises the middle ring of the connector, located between the portal protein (attached to the head) and the gp16 ring (attached to the tail). Binding of the gp15 and gp16 rings to the portal protein is essential to prevent leakage of packaged DNA. gp15 is a component of the mature phage and its mutation results in defective head-tail joining.	2.57323e-06
NZ_CP039261.1\|WP_158172376.1\|1110613_1111048_-\|HK97-gp10-family-phage-protein	gnl\|CDD\|377415	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component. This family of proteins is found in the caudovirales. It may be a tail component.	3.43083e-09
NZ_CP039261.1\|WP_012846301.1\|1116328_1117429_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.13472e-33
NZ_CP039261.1\|WP_158172382.1\|1122829_1124515_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	5.31933e-72
NZ_CP039261.1\|WP_087712923.1\|1121089_1122211_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	6.37154e-148
NZ_CP039261.1\|WP_069168440.1\|1112367_1113591_+\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	2.50678e-32
NZ_CP039261.1\|WP_157662328.1\|1122213_1122801_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.31651e-19
NZ_CP039261.1\|WP_087712926.1\|1118798_1119737_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.33452e-131
NZ_CP039261.1\|WP_087712920.1\|1124507_1127258_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.69098e-91

>NZ_CP039261.1|WP_012846301.1|1116328_1117429_+|site-specific-integrase
MAVYKDKKTKTWFVKRSWYDAHKKRHYITRRGFKTKREAEKVNVKLAAQVNDGIDVTRDPVFADYYNEWVKTYKENSVAPNTLRQYILASTHLQHYFGQTTIKSINRSKYQQFINWFGKNHAKSTVVKTNRFYKSCVSSAIEDGIITRNFTDHITLAYNNDKAFKVTYLQADDITRLFNYLYDHRRPQYTTSYMLMLMIVTGLRESEVAGLTWNNIYFSENLIKVEKSWVYSQKDYGPTKNETSQRIVSVPQIMMDCIKELKGNHKAKVFWYPSYKIFPGHKSLGAGLQIALKNLNISAPGFHPHSLRHSQVALLLQANIPIYDIAKRLGHSTTRTTEQTYAYEFKKHRDLMNQKINDALDKSLKK
>NZ_CP039261.1|WP_158172380.1|1114371_1114563_-|hypothetical-protein
MRKDEIKKYVEKQIKIPGTDAVGLTEFEKTFSKEEWNYYMDLLRDVSERYAKGEIDIPEPLVG
>NZ_CP039261.1|WP_158172379.1|1113933_1114281_-|hypothetical-protein
MAKDDYFVLVYKLLTILYTTLKNGKVVTDSELKELSEGLPLDYWEYILKSLSEDGYITGVKPISSLSRNSIKITTLQITPKGIEYLQDNSKMKKAKEVLKNIPQWIALITKFTIK
>NZ_CP039261.1|WP_069168440.1|1112367_1113591_+|IS110-family-transposase
MDLLKTVFGIDVSSRKSNVCIMVNGQKVDDYAISNDMVGFNQLLDDLKQVTKPQIIFEATGVYSRRLQAFLDMHKLRYVMMNPLEAKRKTKDDLHQNKTDKLDALYLAKLQSEHPQRLAYVQSKEYQELMANNRIYEQASHDLITNRNRLHKAIQLTFPEIEHLMVNPRGKNYWSIVLRFPHPDIVLETKEADIIDFLKGLSGIGKKRANDIMQSLIRLAKVACPAVKKDSAHIRGLEMAINNILSAEEACQTALKEMTKLAPKRDLEILTSIPGIGENTALRIISELGDIRRFNNPSQLNAFVGVDPQVYESGNLTAHLSISKRGTAIGRKVLYLAINQIQSAKKAGNPSHIADYYEKRKRSSETASHKKAAIASIHKLLRTIFALIKNDQLYSYDVAKHNQRLLS
>NZ_CP039261.1|WP_158172808.1|1111804_1111984_-|hypothetical-protein
MAEKDADSDSDSVGRKKTEEKDAKPNANNTVEEIKAYLDKAGIDYTGKTKKDELLALVK
>NZ_CP039261.1|WP_158172378.1|1111403_1111796_-|hypothetical-protein
MDKYPHFDEIKKNLADFLPNTDDMPNYDSVLEFTLDKVISDISIYTNIPILELPETLEPTILGLAVQTIDTHQWLVPKDQQVGNVQSLSEGDTSVSFRSPSDIYSALQATNTITDNYVLLLNNFRKLPAE
>NZ_CP039261.1|WP_158172377.1|1111044_1111407_-|hypothetical-protein
MNYFNGLKNALPRLWNDRVRIVGTQPVKKGYITNNEDVTIVEDEPAKVILKGQSPSEQSFFGTDEYDAKLIIRNGIKIPAGADIYVTDINGQETKYKRASKGYSGYFSHQEVAMVRSEKA
>NZ_CP039261.1|WP_158172376.1|1110613_1111048_-|HK97-gp10-family-phage-protein
MSLGHVDDAQFQQFASRVRQKIDSGYVKQELGKSSKRIGTQSLRILKANTPVKEGNLRRSWTAEGPSYSGGGWTIKLINNAEYASYVESGHRQQPGRYVPVLKKCLVRDWVPGQFYMKKSIPQIQRQMPQLVTEGLWALKDLFE
>NZ_CP039261.1|WP_158172375.1|1110212_1110617_-|hypothetical-protein
MNLIDLIAKRLSEIFPDMTIYSERQKSGFEVPSFYISKIMTITKSRFFDIQDRTVSYSLTYFANPDRPNADMDEVEQKLLNNFTRLDDYATVRNRETTINQDDETLVMSFDLLLNMYKIENGGKLERIEYSGGI
>NZ_CP039261.1|WP_143445803.1|1109519_1109633_+|type-I-toxin-antitoxin-system-Fst-family-toxin
MSLLKEFLTLVVAPILVEIVKSLFDHWLDDRHNNKKQ
>NZ_CP039261.1|WP_158172381.1|1117914_1118793_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MIVITLSKTPASLRGDLTKWCQEIQTGIYVGSVNAKVRDLLWERVQKNIGQGEATLVYNTNNELGYTFRTTRLDRKIVDFDGIPLLKHVNVTPNLKLGFSNAAKYHKAKVCSRSVLHNSTLLKFAVIDIETTGLAPNKSEILSIGAVKYLKNGKVDVFYKLIRDVNCIPADVSELTGLNMKILKSKGSNLIEVLKMLKDFLGDRILLGYNLAFDISFLDIAYKRNKISGLINTSKDLLPIIKKNNKFLDNYKLSTVLSEYKIENQNPHHADFDAKCTYQLALKLINEGKLKL
>NZ_CP039261.1|WP_087712926.1|1118798_1119737_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MQRKFGAKKPEISELSKVSDRITFLYLEHAKLNRIDSAISVADSTGTVYIPAAIISVLLLGPGIDVTHRAMELMGDAGMAVVWVGEDGVRQYAHGRSLNHSSILLQAQAKLVSNTRTRLAVARKMYQMRFPGMDVSGLTMQQLRGKEGARIRRVYQDQSQKTGVAWSRREYKVDDFESSTPINQALTAAHQALYGLSYSVIVALGASAGLGFIHTGHDLSFVYDFSDLYKADYSIPIAFEMVKEYGKDDIAVHTRHAMRDAFKDGKLIEKMVKDLKYLLDIKNQDEVHAVMSLWDNKKGLQKFGVQYHEPEE
>NZ_CP039261.1|WP_087712925.1|1119739_1120387_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRVEIDLKNRRKISDLSHLGAYHNWVESCFPKYQDKDNRPRNLWRIDVLNGKSYLLVLSEQKPDLEKLTKYGVLGTAITKKYDDFLDKLYDGERLRFRLTANPSRKISVPGQRQGRIMPHITIDQQKKWFLDRTESNGFKIVKTQENYPEFDIVNREWKLLRHKGSGTARLSCVTFEGILKITDLKKFKNAMISGIGREKAYGMGLLTVIPM
>NZ_CP039261.1|WP_087712924.1|1120398_1121109_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTLTIKLKAPLQAYGNEATFGRRTTNPYPTKSAVIGMISASLGYGRNDKRILELNNLSFAVRSDQPGQVVNDFQIVEYAKSATKKAKKLTYRYYLQDAIFMVAIGSENEELIEKIHYALQHPKFPLFLGRRSCPPAGPLEIEMFNNQNPLNVLKSMDWQAAKWYQRKHPNFSAELVYDANLGARDHFVFQVKDKVGSFDQRNRYHDYREVVSTYIPMKNQINAHAETTHDIISNI
>NZ_CP039261.1|WP_087712923.1|1121089_1122211_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTQNNLYVDIHVLQTVPSSNINRDDTGAPKTAVYGGTTRSRVSSQSWKKAIREGFKKDSKEHDWLRGFRTKRTATLLANELMKQDASLSFDDARKKAKEVLSNMGLKFDKSKKTDKNNDKDFETKVLLFFSPGQLRKLAEYVLNNNEIDKKEAKKLLTENQSLDLALFGRMVADDPELNVEASSQVAHAISTHEVVPEFDFFTAVDDAKTSEESGSAMLGTIEYNSSTLYRYANINMKELIHNLGVDLAQIGLKEFIKNFALTMPTGHQNSYANKTLPQYILVTIREDTPVNLVSAFEASVQSNRGYTKKSIERLETEFDNISGWIGEPIASFVHANKEFETTVGEKEQNINKLLDDVSTIVAKRVENENTND
>NZ_CP039261.1|WP_157662328.1|1122213_1122801_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTKIERNTNKIIKKLHEREGNDKAILSALRRSNSILSRQATIVWPLLFEYIKEKDTFGENSRQTTSERAIFTALRCYAVFEQGNDVERDREYDNENAMSLFRSLSFLRKDEQLREALDRRVRAVLSTTNAEVVTISLVSLTKIIKANNPAASINYPELANDIYNFQLGFEPARKVAIKWGREYFWINDNKESNED
>NZ_CP039261.1|WP_158172382.1|1122829_1124515_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDKKSFNLVTEPWIQVLDKDGNPKEVSLLEVFENAASYQRLAGDMASQDLVILRLLVAILTTVYSRIDANGKNYEWLTLDEKMHLKEAEEEDYEYDDLVNTWQFLYKNGQFSKSVLQYLKENSSKFDFLGDDPFYQVNKEVYDQEVPANKKVNIKNPKGTVDVKQINRTISESNNSLSIFSPKTRQTKNEINLAQLVRWILTYQSFTGVTDKTKLINKPVSSGWLYGLNPVFAQGENLFQTLMLNLVFSEEYKEEKPFWEFENAFEYIEFLKDEPFARDLSISTLYTLWSRMLHIEWINEKPIIFTAGLPKLDSAEAFIEPMTTWRKNKKTGEVYPATKHLTDLTKAMWRNFGQYVRTTDPDELEDMHEPEIIKWLRKVQNNEYLPTDTSLTLRTTTLISDGKSSSQLPAFEVNDCFKIKANVLFDKNKKDYWPEDIENMIDLTQQVGKDFWIFTNNISKLRGLNGTDFADNSTIKFYESLNLPFLTWLASLRNDQERANKTIEWKEILKKISITKAEEVLKNASPRDIIGQESSKEEGSGINNIFTIFNWYKLNVFRHIK
>NZ_CP039261.1|WP_087712920.1|1124507_1127258_-|CRISPR-associated-helicase/endonuclease-Cas3
MVNLFPATKALWGKKAVHDDQEFWLPLVAHLIDTKNVMQWLYNNWISEGTRKILQQNLYPEDTQKLVGFLGFYHDFGKATPAFQYKQSFPRNKDLDEDINENLRRAGFSSISMDNYRVHKSPHPIAGETLLESFGLNESIGSIIGGHHGLPPKKDVTFKQLNIYASNLWGRDTDTKIQDEWKFVQNNLFKYGLALCGYNDIKDVPEVTLPQAVILEGMLIMADWLASSEKLTNYSNISLFPLISLEENFDELNMEERYHQAIKKWDISDRWMPEKIASVNEQYRLRFNFIPRPVQKEMSEIISQANDPGLVIIEAPTGIGKTELALTAAEQLAFKQGKSGLYMGLPTQATTNAMFSRVKEWLDSIAKEQAAHPDVKLLQGKAKFNKPYTKLPYAENIYDDTDGAVVINSWFAGKKSSLSHFAVGTIDHLLLTALKQKHLFLRHLGFSDKVVIIDELHAYDSYMSSYLEKAIKWLGAYHVPVIALSATLPKKKRNDLLKAYLKGKYGSIKIKANDNWKVNEGYPLLSILDGNKLEQVSEFSIANDENRTINVVRFNGNEEEIINKAVAEIEDGGIAGIVVNTVKRAQDLARLVPENIEVLLLHSAYLAPEREKIEERLQAKIGKGGMRPQKMIVIGTQVLEQSLDIDFDVLFTDIAPVDLIIQRIGRLHRHKISRPITLAKPTVYITGINGYGDYGKGNEFIYEKYLLMKTDHFLKNKINIPDDVSPLVQKVYDPKIDKDIKDIAEAEAKFEKDLKKSKKKAQVFQIGNPNEKDRNNLFGWLSDGQINVNDDNHAAACVRDIKETIEVILLRTTSEGTFLMDGRNIEEVSSEEIAGQTIRLPFAIVNSSKIKDLIDKTIRELETNMQSLHNKWKEDIWLRGALVLELNENNLTTLNGFNLKYSSKLGLMYEKEEEDG
>NZ_CP039261.1|WP_158172383.1|1129466_1130384_-|M48-family-metalloprotease
MLYKQIEQNKRNTWIILGLYTLLILIISIFLGMLFTVYIGGAFFIIGLIYIAHVYFDATRHLMKVTNAVEITKETEPQIYELVEELCLAGGLPVPKLYITPDQAPNAFATGRDPQHASLALTQGLLNMMNKKEVQGVIGHELSHIRNYDTRITVLASALTSLITMTGIGIVVFGWGVLTSESKGLLGLLIKFFALFLIIVGGIISIIGIPIAKLLFLLVSRQREYLADIGSVDLTREPSGLISALSKLEKLEEGEGTPQIGSQDLALQHLYFNFPSAHNWINRLFSDHPPLDKRIERLENSNQIK
>NZ_CP039261.1|WP_087285405.1|1130597_1131023_-|restriction-endonuclease
MSMYRNDDVLITDLMDRISNLENQMTELKKIYYKQSGESHSTFLYGCEVRGSDYLHLEDKIVPRLKENDPVLLIREADNKYDKNAISVTTPSGLKLGYVPHEHNLIFSRLIDAGNLLFGRVKTFHWDGKNLELVIKVYLAG

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Crispr_ID: NZ_CP039261_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039261_2

1127944-1129317

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
AGGATCATCTCCACTTACGTGGAGAATAC	CRT
GGATCATCTCCACTTACGTGGAGAATAC	CRISPRCasFinder
GGATCATCTCCACTTACGTGGAGAATAC	PILER-CR
AGGATCATCTCCACTTACGTGGAGAATAC	PILER-CR

22 spacers

cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2

The CRISPR arrays of NZ_CP039261_2

>merge|NZ_CP039261|2|1127944-1129317|CRT,CRISPRCasFinder,PILER-CR,PILER-CR
TAGGTTATATTCTCTTACGTGGAAAACACTTGGCTACTTCATCAGCCAAGTTAGAGGAATAGGATCACCTCCACTTACGTGGAGAATACTACAACCACAACCACTGATATCACGGGAACTCAAGGATCATCTCCACTTACGTGGAGAATACGCAGTCCAGTAACAATATTTTTCTGGTCATTAAGGATCATCTCCACTTACGTGGAGAATACTCAGCCTTAGCATTTATAGTAGGAAGCTTATTGGGATCATCTCCACTTACGTGGAGAATACTAGCCACCAGTTTTTTTGATTAATTGAGCGGTAAGGATCATCTCCACTTACGTGGAGAATACGACTACTGCCGAAATTCATTTGCGGTTGACATAGGATCATCTCCACTTACGTGGAGAATACACATTATCTGAAGGTGGTACTGCAAAAATTTAAGGATCATCTCCACTTACGTGGAGAATACTAAGGTGCGCAGCTTCCCCAACTCTACACCCAGGGATCATCTCCACTTACGTGGAGAATACCTCGTCAAGAGTTGAGTAATATTCAAGCTGATAGGATCATCTCCACTTACGTGGAGAATACCTCCAATCGACAAAAGAATATCGGGTCAATACAGGATCATCTCCACTTACGTGGAGAATACTTCGACTGTAATGCTACCACCGTCAATAATTAAGGATCATCTCCACTTACGTGGAGAATACTTTAATGGATAGTGCTGAACTAGCAAAACAAGTAGGGATCATCTCCACTTACGTGGAGAATACTCCTAATTTAGGGGAAAGTTTGGTCGCGTCTTAGGATCATCTCCACTTACGTGGAGAATACTTTCTCTGTAGACAAACCACCATATTCCTTTAAGGATCATCTCCACTTACGTGGAGAATACTCGGTATCGGAATAAATATAATCGTCTCCAATAGGATCATCTCCACTTACGTGGAGAATACTTTGACCTCCTTTCATCTGATCTCTAATTGATAGGATCATCTCCACTTACGTGGAGAATACTTTTGGTAATTCAACTGTTAGCCTAGGCATTAAGGATCATCTCCACTTACGTGGAGAATACTTATGACTTACGAGGTGTATAGTACGGCTATTAGGATCATCTCCACTTACGTGGAGAATACTTTTCCTCCTACTTCTGGATAATCTCTCCCATAGGATCATCTCCACTTACGTGGAGAATACTACCTTTAGCTCTAGGCAAGTGAACATACCTTGGGATCATCTCCACTTACGTGGAGAATACCTTTTGCCTTCTTTTTTAACAGCGTTAATTTTAGGATCATCTCCACTTACGTGGAGAATACTAAAGTATACGGTTTATATGTTTCTAAGTTATAGGATCATCTCCACTTACGTGGAGAATAC

>NZ_CP039261|2|2|1127944-1129317|CRT
TAGGTTATATTCTCTTACGTGGAAAACAC	TTGGCTACTTCATCAGCCAAGTTAGAGGAAT
AGGATCACCTCCACTTACGTGGAGAATAC	TACAACCACAACCACTGATATCACGGGAACTCA
AGGATCATCTCCACTTACGTGGAGAATAC	GCAGTCCAGTAACAATATTTTTCTGGTCATTA
AGGATCATCTCCACTTACGTGGAGAATAC	TCAGCCTTAGCATTTATAGTAGGAAGCTTATT
GGGATCATCTCCACTTACGTGGAGAATAC	TAGCCACCAGTTTTTTTGATTAATTGAGCGGTA
AGGATCATCTCCACTTACGTGGAGAATAC	GACTACTGCCGAAATTCATTTGCGGTTGACAT
AGGATCATCTCCACTTACGTGGAGAATAC	ACATTATCTGAAGGTGGTACTGCAAAAATTTA
AGGATCATCTCCACTTACGTGGAGAATAC	TAAGGTGCGCAGCTTCCCCAACTCTACACCCA
GGGATCATCTCCACTTACGTGGAGAATAC	CTCGTCAAGAGTTGAGTAATATTCAAGCTGAT
AGGATCATCTCCACTTACGTGGAGAATAC	CTCCAATCGACAAAAGAATATCGGGTCAATAC
AGGATCATCTCCACTTACGTGGAGAATAC	TTCGACTGTAATGCTACCACCGTCAATAATTA
AGGATCATCTCCACTTACGTGGAGAATAC	TTTAATGGATAGTGCTGAACTAGCAAAACAAGTA
GGGATCATCTCCACTTACGTGGAGAATAC	TCCTAATTTAGGGGAAAGTTTGGTCGCGTCTT
AGGATCATCTCCACTTACGTGGAGAATAC	TTTCTCTGTAGACAAACCACCATATTCCTTTA
AGGATCATCTCCACTTACGTGGAGAATAC	TCGGTATCGGAATAAATATAATCGTCTCCAAT
AGGATCATCTCCACTTACGTGGAGAATAC	TTTGACCTCCTTTCATCTGATCTCTAATTGAT
AGGATCATCTCCACTTACGTGGAGAATAC	TTTTGGTAATTCAACTGTTAGCCTAGGCATTA
AGGATCATCTCCACTTACGTGGAGAATAC	TTATGACTTACGAGGTGTATAGTACGGCTATT
AGGATCATCTCCACTTACGTGGAGAATAC	TTTTCCTCCTACTTCTGGATAATCTCTCCCAT
AGGATCATCTCCACTTACGTGGAGAATAC	TACCTTTAGCTCTAGGCAAGTGAACATACCTT
GGGATCATCTCCACTTACGTGGAGAATAC	CTTTTGCCTTCTTTTTTAACAGCGTTAATTTT
AGGATCATCTCCACTTACGTGGAGAATAC	TAAAGTATACGGTTTATATGTTTCTAAGTTAT
AGGATCATCTCCACTTACGTGGAGAATAC

>NZ_CP039261|2|2|1127945-1129317|CRISPRCasFinder
AGGTTATATTCTCTTACGTGGAAAACAC	TTGGCTACTTCATCAGCCAAGTTAGAGGAATA
GGATCACCTCCACTTACGTGGAGAATAC	TACAACCACAACCACTGATATCACGGGAACTCAA
GGATCATCTCCACTTACGTGGAGAATAC	GCAGTCCAGTAACAATATTTTTCTGGTCATTAA
GGATCATCTCCACTTACGTGGAGAATAC	TCAGCCTTAGCATTTATAGTAGGAAGCTTATTG
GGATCATCTCCACTTACGTGGAGAATAC	TAGCCACCAGTTTTTTTGATTAATTGAGCGGTAA
GGATCATCTCCACTTACGTGGAGAATAC	GACTACTGCCGAAATTCATTTGCGGTTGACATA
GGATCATCTCCACTTACGTGGAGAATAC	ACATTATCTGAAGGTGGTACTGCAAAAATTTAA
GGATCATCTCCACTTACGTGGAGAATAC	TAAGGTGCGCAGCTTCCCCAACTCTACACCCAG
GGATCATCTCCACTTACGTGGAGAATAC	CTCGTCAAGAGTTGAGTAATATTCAAGCTGATA
GGATCATCTCCACTTACGTGGAGAATAC	CTCCAATCGACAAAAGAATATCGGGTCAATACA
GGATCATCTCCACTTACGTGGAGAATAC	TTCGACTGTAATGCTACCACCGTCAATAATTAA
GGATCATCTCCACTTACGTGGAGAATAC	TTTAATGGATAGTGCTGAACTAGCAAAACAAGTAG
GGATCATCTCCACTTACGTGGAGAATAC	TCCTAATTTAGGGGAAAGTTTGGTCGCGTCTTA
GGATCATCTCCACTTACGTGGAGAATAC	TTTCTCTGTAGACAAACCACCATATTCCTTTAA
GGATCATCTCCACTTACGTGGAGAATAC	TCGGTATCGGAATAAATATAATCGTCTCCAATA
GGATCATCTCCACTTACGTGGAGAATAC	TTTGACCTCCTTTCATCTGATCTCTAATTGATA
GGATCATCTCCACTTACGTGGAGAATAC	TTTTGGTAATTCAACTGTTAGCCTAGGCATTAA
GGATCATCTCCACTTACGTGGAGAATAC	TTATGACTTACGAGGTGTATAGTACGGCTATTA
GGATCATCTCCACTTACGTGGAGAATAC	TTTTCCTCCTACTTCTGGATAATCTCTCCCATA
GGATCATCTCCACTTACGTGGAGAATAC	TACCTTTAGCTCTAGGCAAGTGAACATACCTTG
GGATCATCTCCACTTACGTGGAGAATAC	CTTTTGCCTTCTTTTTTAACAGCGTTAATTTTA
GGATCATCTCCACTTACGTGGAGAATAC	TAAAGTATACGGTTTATATGTTTCTAAGTTATA
GGATCATCTCCACTTACGTGGAGAATAC

>NZ_CP039261|2|2|1128005-1128768|PILER-CR
GGATCACCTCCACTTACGTGGAGAATAC	TACAACCACAACCACTGATATCACGGGAACTCAA
GGATCATCTCCACTTACGTGGAGAATAC	GCAGTCCAGTAACAATATTTTTCTGGTCATTAA
GGATCATCTCCACTTACGTGGAGAATAC	TCAGCCTTAGCATTTATAGTAGGAAGCTTATTG
GGATCATCTCCACTTACGTGGAGAATAC	TAGCCACCAGTTTTTTTGATTAATTGAGCGGTAA
GGATCATCTCCACTTACGTGGAGAATAC	GACTACTGCCGAAATTCATTTGCGGTTGACATA
GGATCATCTCCACTTACGTGGAGAATAC	ACATTATCTGAAGGTGGTACTGCAAAAATTTAA
GGATCATCTCCACTTACGTGGAGAATAC	TAAGGTGCGCAGCTTCCCCAACTCTACACCCAG
GGATCATCTCCACTTACGTGGAGAATAC	CTCGTCAAGAGTTGAGTAATATTCAAGCTGATA
GGATCATCTCCACTTACGTGGAGAATAC	CTCCAATCGACAAAAGAATATCGGGTCAATACA
GGATCATCTCCACTTACGTGGAGAATAC	TTCGACTGTAATGCTACCACCGTCAATAATTAA
GGATCATCTCCACTTACGTGGAGAATAC	TTTAATGGATAGTGCTGAACTAGCAAAACAAGTAG
GGATCATCTCCACTTACGTGGAGAATAC	TCCTAATTTAGGGGAAAGTTTGGTCGCGTCTTA
GGATCATCTCCACTTACGTGGAGAATACTTTCTCTGTAGACAAACCACCATATTCCTTTAAGGATCATCTCCACTTACGTGGAGAATACTCGGTATCGGAATAAATATAATCGTCTCCAATAGGATCATCTCCACTTACGTGGAGAATAC	TTTGACCTCCTTTCATCTGATCTCTAATTGAT
AGGATCATCTCCACTTACGTGGAGAATAC	TTTTGGTAATTCAACTGTTAGCCTAGGCATTA
AGGATCATCTCCACTTACGTGGAGAATAC	TTATGACTTACGAGGTGTATAGTACGGCTATT
AGGATCATCTCCACTTACGTGGAGAATAC	TTTTCCTCCTACTTCTGGATAATCTCTCCCAT
AGGATCATCTCCACTTACGTGGAGAATAC	TACCTTTAGCTCTAGGCAAGTGAACATACCTT
GGGATCATCTCCACTTACGTGGAGAATAC	CTTTTGCCTTCTTTTTTAACAGCGTTAATTTT
AGGATCATCTCCACTTACGTGGAGAATAC	TAAAGTATACGGTTTATATGTTTCTAAGTTAT


>NZ_CP039261|2|3|1128862-1129317|PILER-CR
	TACAACCACAACCACTGATATCACGGGAACTCAA
GGATCATCTCCACTTACGTGGAGAATAC	GCAGTCCAGTAACAATATTTTTCTGGTCATTAA
GGATCATCTCCACTTACGTGGAGAATAC	TCAGCCTTAGCATTTATAGTAGGAAGCTTATTG
GGATCATCTCCACTTACGTGGAGAATAC	TAGCCACCAGTTTTTTTGATTAATTGAGCGGTAA
GGATCATCTCCACTTACGTGGAGAATAC	GACTACTGCCGAAATTCATTTGCGGTTGACATA
GGATCATCTCCACTTACGTGGAGAATAC	ACATTATCTGAAGGTGGTACTGCAAAAATTTAA
GGATCATCTCCACTTACGTGGAGAATAC	TAAGGTGCGCAGCTTCCCCAACTCTACACCCAG
GGATCATCTCCACTTACGTGGAGAATAC	CTCGTCAAGAGTTGAGTAATATTCAAGCTGATA
GGATCATCTCCACTTACGTGGAGAATAC	CTCCAATCGACAAAAGAATATCGGGTCAATACA
GGATCATCTCCACTTACGTGGAGAATAC	TTCGACTGTAATGCTACCACCGTCAATAATTAA
GGATCATCTCCACTTACGTGGAGAATAC	TTTAATGGATAGTGCTGAACTAGCAAAACAAGTAG
GGATCATCTCCACTTACGTGGAGAATAC	TCCTAATTTAGGGGAAAGTTTGGTCGCGTCTTA
GGATCATCTCCACTTACGTGGAGAATACTTTCTCTGTAGACAAACCACCATATTCCTTTAAGGATCATCTCCACTTACGTGGAGAATACTCGGTATCGGAATAAATATAATCGTCTCCAATAGGATCATCTCCACTTACGTGGAGAATAC	TTTGACCTCCTTTCATCTGATCTCTAATTGAT
AGGATCATCTCCACTTACGTGGAGAATAC	TTTTGGTAATTCAACTGTTAGCCTAGGCATTA
AGGATCATCTCCACTTACGTGGAGAATAC	TTATGACTTACGAGGTGTATAGTACGGCTATT
AGGATCATCTCCACTTACGTGGAGAATAC	TTTTCCTCCTACTTCTGGATAATCTCTCCCAT
AGGATCATCTCCACTTACGTGGAGAATAC	TACCTTTAGCTCTAGGCAAGTGAACATACCTT
GGGATCATCTCCACTTACGTGGAGAATAC	CTTTTGCCTTCTTTTTTAACAGCGTTAATTTT
AGGATCATCTCCACTTACGTGGAGAATAC	TAAAGTATACGGTTTATATGTTTCTAAGTTAT
AGGATCATCTCCACTTACGTGGAGAATAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039261.1\|WP_158172383.1\|1129466_1130384_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320699
NZ_CP039261.1\|WP_087712925.1\|1119739_1120387_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP039261.1\|WP_158172386.1\|1141563_1142385_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039261.1\|WP_087285405.1\|1130597_1131023_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|214906
NZ_CP039261.1\|WP_087712924.1\|1120398_1121109_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP039261.1\|WP_023599651.1\|1131800_1132850_+\|IS30-like-element-ISLjo1-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP039261.1\|WP_158172380.1\|1114371_1114563_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039261.1\|WP_158172385.1\|1139086_1140334_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039261.1\|WP_158172381.1\|1117914_1118793_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_CP039261.1\|WP_151376073.1\|1137809_1138853_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|365803
NZ_CP039261.1\|WP_158172809.1\|1142635_1144006_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP039261.1\|WP_158172387.1\|1144164_1144767_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039261.1\|WP_158172384.1\|1133230_1133428_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039261.1\|WP_012846301.1\|1116328_1117429_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP039261.1\|WP_158172382.1\|1122829_1124515_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP039261.1\|WP_087712923.1\|1121089_1122211_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP039261.1\|WP_087712920.1\|1124507_1127258_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP039261.1\|WP_157662328.1\|1122213_1122801_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP039261.1\|WP_087712926.1\|1118798_1119737_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP039261.1\|WP_151376072.1\|1135542_1137810_-\|S8-family-peptidase	unknown	unknown	gnl\|CDD\|173793

Protein	Function_ID	Function_description	E-value
NZ_CP039261.1\|WP_158172383.1\|1129466_1130384_-\|M48-family-metalloprotease	gnl\|CDD\|320699	cd07340, M48B_Htpx_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase. This HtpX family of peptidase M48 subfamily B includes uncharacterized HtpX homologs and consists of proteins smaller than Ste24p, with homology restricted to the C-terminal half of Ste24p. HtpX expression is controlled by the Cpx stress response system, which senses abnormal membrane proteins. HtpX participates in the proteolytic quality control of these misfolded proteins by undergoing self-degradation and collaborating with FtsH, a membrane-bound and ATP-dependent protease, to eliminate them. HtpX, a zinc metalloprotease with an active site motif HEXXH, has an FtsH-like topology, and is capable of introducing endoproteolytic cleavages into SecY (also an FtsH substrate). However, HtpX does not have an ATPase activity and will only act against cytoplasmic regions of a target membrane protein. Thus, HtpX and FtsH have overlapping and/or complementary functions, which are especially important at high temperature; in E. coli and Xylella fastidiosa, HtpX is heat-inducible, while in Streptococcus gordonii it is not.	4.08459e-101
NZ_CP039261.1\|WP_087712925.1\|1119739_1120387_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	8.6235e-75
NZ_CP039261.1\|WP_087285405.1\|1130597_1131023_-\|restriction-endonuclease	gnl\|CDD\|214906	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. HIRAN is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this protein functions as a DNA-binding domain that probably recognises features associated with damaged DNA or stalled replication forks.	6.03519e-19
NZ_CP039261.1\|WP_087712924.1\|1120398_1121109_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.31131e-55
NZ_CP039261.1\|WP_023599651.1\|1131800_1132850_+\|IS30-like-element-ISLjo1-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.48198e-77
NZ_CP039261.1\|WP_158172381.1\|1117914_1118793_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	1.17557e-40
NZ_CP039261.1\|WP_151376073.1\|1137809_1138853_-\|AAA-family-ATPase	gnl\|CDD\|365803	pfam00004, AAA, ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.	2.10186e-18
NZ_CP039261.1\|WP_158172809.1\|1142635_1144006_-\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	6.1426e-06
NZ_CP039261.1\|WP_012846301.1\|1116328_1117429_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.13472e-33
NZ_CP039261.1\|WP_158172382.1\|1122829_1124515_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	5.31933e-72
NZ_CP039261.1\|WP_087712923.1\|1121089_1122211_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	6.37154e-148
NZ_CP039261.1\|WP_087712920.1\|1124507_1127258_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.69098e-91
NZ_CP039261.1\|WP_157662328.1\|1122213_1122801_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.31651e-19
NZ_CP039261.1\|WP_087712926.1\|1118798_1119737_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.33452e-131
NZ_CP039261.1\|WP_151376072.1\|1135542_1137810_-\|S8-family-peptidase	gnl\|CDD\|173793	cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	6.97582e-54

>NZ_CP039261.1|WP_087712920.1|1124507_1127258_-|CRISPR-associated-helicase/endonuclease-Cas3
MVNLFPATKALWGKKAVHDDQEFWLPLVAHLIDTKNVMQWLYNNWISEGTRKILQQNLYPEDTQKLVGFLGFYHDFGKATPAFQYKQSFPRNKDLDEDINENLRRAGFSSISMDNYRVHKSPHPIAGETLLESFGLNESIGSIIGGHHGLPPKKDVTFKQLNIYASNLWGRDTDTKIQDEWKFVQNNLFKYGLALCGYNDIKDVPEVTLPQAVILEGMLIMADWLASSEKLTNYSNISLFPLISLEENFDELNMEERYHQAIKKWDISDRWMPEKIASVNEQYRLRFNFIPRPVQKEMSEIISQANDPGLVIIEAPTGIGKTELALTAAEQLAFKQGKSGLYMGLPTQATTNAMFSRVKEWLDSIAKEQAAHPDVKLLQGKAKFNKPYTKLPYAENIYDDTDGAVVINSWFAGKKSSLSHFAVGTIDHLLLTALKQKHLFLRHLGFSDKVVIIDELHAYDSYMSSYLEKAIKWLGAYHVPVIALSATLPKKKRNDLLKAYLKGKYGSIKIKANDNWKVNEGYPLLSILDGNKLEQVSEFSIANDENRTINVVRFNGNEEEIINKAVAEIEDGGIAGIVVNTVKRAQDLARLVPENIEVLLLHSAYLAPEREKIEERLQAKIGKGGMRPQKMIVIGTQVLEQSLDIDFDVLFTDIAPVDLIIQRIGRLHRHKISRPITLAKPTVYITGINGYGDYGKGNEFIYEKYLLMKTDHFLKNKINIPDDVSPLVQKVYDPKIDKDIKDIAEAEAKFEKDLKKSKKKAQVFQIGNPNEKDRNNLFGWLSDGQINVNDDNHAAACVRDIKETIEVILLRTTSEGTFLMDGRNIEEVSSEEIAGQTIRLPFAIVNSSKIKDLIDKTIRELETNMQSLHNKWKEDIWLRGALVLELNENNLTTLNGFNLKYSSKLGLMYEKEEEDG
>NZ_CP039261.1|WP_158172382.1|1122829_1124515_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDKKSFNLVTEPWIQVLDKDGNPKEVSLLEVFENAASYQRLAGDMASQDLVILRLLVAILTTVYSRIDANGKNYEWLTLDEKMHLKEAEEEDYEYDDLVNTWQFLYKNGQFSKSVLQYLKENSSKFDFLGDDPFYQVNKEVYDQEVPANKKVNIKNPKGTVDVKQINRTISESNNSLSIFSPKTRQTKNEINLAQLVRWILTYQSFTGVTDKTKLINKPVSSGWLYGLNPVFAQGENLFQTLMLNLVFSEEYKEEKPFWEFENAFEYIEFLKDEPFARDLSISTLYTLWSRMLHIEWINEKPIIFTAGLPKLDSAEAFIEPMTTWRKNKKTGEVYPATKHLTDLTKAMWRNFGQYVRTTDPDELEDMHEPEIIKWLRKVQNNEYLPTDTSLTLRTTTLISDGKSSSQLPAFEVNDCFKIKANVLFDKNKKDYWPEDIENMIDLTQQVGKDFWIFTNNISKLRGLNGTDFADNSTIKFYESLNLPFLTWLASLRNDQERANKTIEWKEILKKISITKAEEVLKNASPRDIIGQESSKEEGSGINNIFTIFNWYKLNVFRHIK
>NZ_CP039261.1|WP_157662328.1|1122213_1122801_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTKIERNTNKIIKKLHEREGNDKAILSALRRSNSILSRQATIVWPLLFEYIKEKDTFGENSRQTTSERAIFTALRCYAVFEQGNDVERDREYDNENAMSLFRSLSFLRKDEQLREALDRRVRAVLSTTNAEVVTISLVSLTKIIKANNPAASINYPELANDIYNFQLGFEPARKVAIKWGREYFWINDNKESNED
>NZ_CP039261.1|WP_087712923.1|1121089_1122211_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTQNNLYVDIHVLQTVPSSNINRDDTGAPKTAVYGGTTRSRVSSQSWKKAIREGFKKDSKEHDWLRGFRTKRTATLLANELMKQDASLSFDDARKKAKEVLSNMGLKFDKSKKTDKNNDKDFETKVLLFFSPGQLRKLAEYVLNNNEIDKKEAKKLLTENQSLDLALFGRMVADDPELNVEASSQVAHAISTHEVVPEFDFFTAVDDAKTSEESGSAMLGTIEYNSSTLYRYANINMKELIHNLGVDLAQIGLKEFIKNFALTMPTGHQNSYANKTLPQYILVTIREDTPVNLVSAFEASVQSNRGYTKKSIERLETEFDNISGWIGEPIASFVHANKEFETTVGEKEQNINKLLDDVSTIVAKRVENENTND
>NZ_CP039261.1|WP_087712924.1|1120398_1121109_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTLTIKLKAPLQAYGNEATFGRRTTNPYPTKSAVIGMISASLGYGRNDKRILELNNLSFAVRSDQPGQVVNDFQIVEYAKSATKKAKKLTYRYYLQDAIFMVAIGSENEELIEKIHYALQHPKFPLFLGRRSCPPAGPLEIEMFNNQNPLNVLKSMDWQAAKWYQRKHPNFSAELVYDANLGARDHFVFQVKDKVGSFDQRNRYHDYREVVSTYIPMKNQINAHAETTHDIISNI
>NZ_CP039261.1|WP_087712925.1|1119739_1120387_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRVEIDLKNRRKISDLSHLGAYHNWVESCFPKYQDKDNRPRNLWRIDVLNGKSYLLVLSEQKPDLEKLTKYGVLGTAITKKYDDFLDKLYDGERLRFRLTANPSRKISVPGQRQGRIMPHITIDQQKKWFLDRTESNGFKIVKTQENYPEFDIVNREWKLLRHKGSGTARLSCVTFEGILKITDLKKFKNAMISGIGREKAYGMGLLTVIPM
>NZ_CP039261.1|WP_087712926.1|1118798_1119737_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MQRKFGAKKPEISELSKVSDRITFLYLEHAKLNRIDSAISVADSTGTVYIPAAIISVLLLGPGIDVTHRAMELMGDAGMAVVWVGEDGVRQYAHGRSLNHSSILLQAQAKLVSNTRTRLAVARKMYQMRFPGMDVSGLTMQQLRGKEGARIRRVYQDQSQKTGVAWSRREYKVDDFESSTPINQALTAAHQALYGLSYSVIVALGASAGLGFIHTGHDLSFVYDFSDLYKADYSIPIAFEMVKEYGKDDIAVHTRHAMRDAFKDGKLIEKMVKDLKYLLDIKNQDEVHAVMSLWDNKKGLQKFGVQYHEPEE
>NZ_CP039261.1|WP_158172381.1|1117914_1118793_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MIVITLSKTPASLRGDLTKWCQEIQTGIYVGSVNAKVRDLLWERVQKNIGQGEATLVYNTNNELGYTFRTTRLDRKIVDFDGIPLLKHVNVTPNLKLGFSNAAKYHKAKVCSRSVLHNSTLLKFAVIDIETTGLAPNKSEILSIGAVKYLKNGKVDVFYKLIRDVNCIPADVSELTGLNMKILKSKGSNLIEVLKMLKDFLGDRILLGYNLAFDISFLDIAYKRNKISGLINTSKDLLPIIKKNNKFLDNYKLSTVLSEYKIENQNPHHADFDAKCTYQLALKLINEGKLKL
>NZ_CP039261.1|WP_012846301.1|1116328_1117429_+|site-specific-integrase
MAVYKDKKTKTWFVKRSWYDAHKKRHYITRRGFKTKREAEKVNVKLAAQVNDGIDVTRDPVFADYYNEWVKTYKENSVAPNTLRQYILASTHLQHYFGQTTIKSINRSKYQQFINWFGKNHAKSTVVKTNRFYKSCVSSAIEDGIITRNFTDHITLAYNNDKAFKVTYLQADDITRLFNYLYDHRRPQYTTSYMLMLMIVTGLRESEVAGLTWNNIYFSENLIKVEKSWVYSQKDYGPTKNETSQRIVSVPQIMMDCIKELKGNHKAKVFWYPSYKIFPGHKSLGAGLQIALKNLNISAPGFHPHSLRHSQVALLLQANIPIYDIAKRLGHSTTRTTEQTYAYEFKKHRDLMNQKINDALDKSLKK
>NZ_CP039261.1|WP_158172380.1|1114371_1114563_-|hypothetical-protein
MRKDEIKKYVEKQIKIPGTDAVGLTEFEKTFSKEEWNYYMDLLRDVSERYAKGEIDIPEPLVG
>NZ_CP039261.1|WP_158172383.1|1129466_1130384_-|M48-family-metalloprotease
MLYKQIEQNKRNTWIILGLYTLLILIISIFLGMLFTVYIGGAFFIIGLIYIAHVYFDATRHLMKVTNAVEITKETEPQIYELVEELCLAGGLPVPKLYITPDQAPNAFATGRDPQHASLALTQGLLNMMNKKEVQGVIGHELSHIRNYDTRITVLASALTSLITMTGIGIVVFGWGVLTSESKGLLGLLIKFFALFLIIVGGIISIIGIPIAKLLFLLVSRQREYLADIGSVDLTREPSGLISALSKLEKLEEGEGTPQIGSQDLALQHLYFNFPSAHNWINRLFSDHPPLDKRIERLENSNQIK
>NZ_CP039261.1|WP_087285405.1|1130597_1131023_-|restriction-endonuclease
MSMYRNDDVLITDLMDRISNLENQMTELKKIYYKQSGESHSTFLYGCEVRGSDYLHLEDKIVPRLKENDPVLLIREADNKYDKNAISVTTPSGLKLGYVPHEHNLIFSRLIDAGNLLFGRVKTFHWDGKNLELVIKVYLAG
>NZ_CP039261.1|WP_023599651.1|1131800_1132850_+|IS30-like-element-ISLjo1-family-transposase
MDSLHSTMNQHVKGKHLSFEERVIIQLRLKDGYSLRAIARELNCSPSTISYEVKRGTVKLYHGKVKKYKATQGHDAYKAHRKNCGRKSDFLRKTQFMRYVHKHFFKDGWSLDVCSNRATAVGEFASSDVVCTKTLYNYVDQGLLGIYNYDLPEKLKRNTKLHRIRKNKKKLGRSIEERPKEINKRNEFGHWECDLVLGHKSKDDEVLLTLSERMSREFLILRIPDKTSVSVMQAFKELQRQYSEHWNDIFKTITTDNGSEFADLSNLEKVSNTLVYYAHPYTSCDKGTVERHNGLIRRFIPKGEAIANYSLQDIINIETWCNSLPRKILAYHTPDEIFERELDLIYQAA
>NZ_CP039261.1|WP_158172384.1|1133230_1133428_-|hypothetical-protein
MRNLRFKKDDFLFIRTTYPNIFIKFKNSYEENGIVNVPMQNERDYDYYFDIVGDYIATSLNEAGN
>NZ_CP039261.1|WP_151376072.1|1135542_1137810_-|S8-family-peptidase
MNKLIQLSQNWHYRSSANLYGSFPKLAKNNVVKSETLKVKKIQLMNILDFWEKKQDLIEGAIISAYYDTVVPKTHRIQQLFRQNTTKHPNNFIVGVRYLGDKDDNLRHVITYHVKIDVLKETISEIEKTISLMDSNFNNKINNKDLERVENSPTTLFKNKSDAKRFAQIITDISYVEKFDVYFEDIDNTEEKIVSLYDLKTNTEDISYLLDVLRKLGINKTREDILDRNVVLLDRNDLKILKEKGSFLVYAQSKDLFDLKKEFNTDVSPKGLAELLEPNNEPIVGVIDTTYKELGYFKDWVEYDNDFEDGIDHGNEVTSIIVAGPKFNPGLEDNCGLFRVHHFGITRGGRESSFRIIRRIREIVEAHPEIHVWNLSLGSPFSTNTNRISNEAAVLDQLQAEHPDILFIIAGTNLDNGRSKEEKQFNRIGSPADSVNSLVVNSVDVNGKAASYARKGPVLHYFVKPDVCYYGGDITQPLVTATSLGEKRVMGTSFAAPWIARKASFLMDKMHFSREATKALIIDSASGWLTEEKDPKYMGYGVVPIDIRDVINCKSDEIRFIIRGISQKRITYSDGIPVPKDSLNKFPFIARATLAYFPTCSPNQGVDYTDTELSLQFGRIEGETSTAIKSIVNDNNVEKEYIPETDLRRWLGKWENVKVKAEKFTSRKKGKGVLGKGYWGLKLVSSERLYGYKHRPFNFAVVVTLKNLKGQNLNEEFKQLCIYNNWRVSDIDIDQMLQANLEGNTEINWTDDPDK
>NZ_CP039261.1|WP_151376073.1|1137809_1138853_-|AAA-family-ATPase
MKKSDVVDLIKYHVDKNDVAFKQKALEIADEFKAMGDIDIGSYINSLLATQGVFVPQEIHYSFKYLHQVSDLNKTVFKLPDSIYDDLKGIMNAINRNNGINKFLFVGKPGTGKTESVKVISKILNKTIYKVDFDSVIDSRLGQTAKNISELFNEINNIPYPEKAIVLMDEIDAIALDRISSNDIREMGRATTAVLKGLDELNSNIILIATTNLYKYLDDALSRRFNLIVNFNQYSTSDLMDVAVAIMNDIYKDTDYKISRNIKLFKKIVGLYGDKIPLPGNLNNIIRTTVAFSDPNDPNDYLVRLYKAVSGEKMNITQLSEEGFTLREIGILTGKSKSSVARILEDK
>NZ_CP039261.1|WP_158172385.1|1139086_1140334_+|hypothetical-protein
MKKETFMQNLKLISNNYNPNDDCATSIQVERLLSNYKKHHESVDNNDDALIKKVKDSFPIITNKNGEVRILGLLQALNSVEQITNFKTDKKLKLSDLENIDFKLVPPSTHHEMYFNVANDSNYSTIYNAKNTFLDYYDLAKHANYLLKNGKNVNLLDDLNDLQSTDNLSSRDFTYRFIQNNGSNYLRAIVSKGRYKFYDNPIALYIAISVLSQYIKENNRDFICQKLIVTDSKLYAYFLEKESVTIRNGITIQTGLILSNSELGDGAASFNAYYVIRNSENKKFVGLNSPIASINHGNNPIRIEKSFEQLNKFEKQRIDAIAAVEKVKFTKKLTRDDLSKVATLISRHMPMRQTEAKHVKDRWLTFVEAETALKNTFSLMDLFDKLNSFLENEDPDIQLIMESRISRLLRHFVEK
>NZ_CP039261.1|WP_158172386.1|1141563_1142385_-|hypothetical-protein
MTKYSGFFYSKDGGKTGKYVDLEDALSSLNNYADFKDKYGNMIYCPECHKAILFLTINTKKHPFLRKKPTSEHEVGCSKIYESGSLKETSEYIEHLTDDQIKNKVNSMFANLFGPKSTDRGSGSDNTGSTPKNGSPFSFGISTDKSIRRSFRVRSLKSYIDQDDDKDKVYLIYGKAKLSVLTQTAKKSGNEYDLLEVDPQDKYHHVYRIYLGKHDERNIDPNSQYKVLFIGKYNFNFKYYKEIEENGEKKGIRVWNFELINNNLQALKYEKCN
>NZ_CP039261.1|WP_158172809.1|1142635_1144006_-|IS4-family-transposase
MKALHRNILERLDQIINDTGKHIHDFINDPHAFTRERTLDAATVIKTTINMQGEDLTSELFRAFGRKAIKNNDKVVSTSAYVQRKDQLSPACFKHILTVFNQNLFNIQLFDHKYRIFAIDGSDFNQIWNPKSENIVQTPNHERKKYCQIHVNAFYDLLNNTYQDCIFQPKSKIDERKAAVQMLKKLNCGPHVVTMDQGYIGFNMIENCNRLPNYYYVIRTKTGYGAFKEVAELPNQECDKDIACWVTTSNYYYETHKATENVHLVNHHYRQYMKYRSKNTKDGSWDFGELCTIKFRACKFRINDPKSDKEEWEVVLTNLNRADYPLKRIKEIYHLRWGIETSFKKLKYALGSVQFHSKQDRFIEMEIYAHMIMFNAVSQIDAQAYVPQKNCKYQYAINFKQSCFVIQAMYIISSSTEIFKKILIQISHYTIPIKPGRKDKRNLKPKSAVYYLYRVA
>NZ_CP039261.1|WP_158172387.1|1144164_1144767_-|hypothetical-protein
MLCGNYILSNRSEWTFYFLSSVQFNFTIGVILNLLIIFIFAGDVLYIENNNATEEQKKINNFFEILIVSVILSAFLIFIFVPGPLVEIKLSATMELFKLTIGSVLLEFVIKHMFSNDTSTNKVTWKNSFVSVLTLIVLFVSYSSFSAIENSIGNKNDYDPSLQDFRKFVGRSNKSDLRKYNDIINKALKKQKSTSKHQCH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP021701	Lactobacillus johnsonii strain UMNLJ21 plasmid pUMNLJ21_1 sequence	4368-4400	0	1.0
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP021701	Lactobacillus johnsonii strain UMNLJ21 plasmid pUMNLJ21_1 sequence	17778-17810	0	1.0
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP021706	Lactobacillus johnsonii strain UMNLJ22 plasmid pUMNLJ22_2 sequence	2812-2844	0	1.0
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP021706	Lactobacillus johnsonii strain UMNLJ22 plasmid pUMNLJ22_2 sequence	16222-16254	0	1.0
NZ_CP039261_2	2.21\|1129196\|32\|NZ_CP039261\|CRT,PILER-CR	1129196-1129227	32	NC_002102	Lactobacillus helveticus DSM 20075 plasmid pLH1, complete sequence	19303-19334	0	1.0
NZ_CP039261_2	2.21\|1129196\|32\|NZ_CP039261\|CRT,PILER-CR	1129196-1129227	32	NC_017468	Lactobacillus helveticus H10 plasmid pH10, complete sequence	25160-25191	0	1.0
NZ_CP039261_2	2.43\|1129196\|33\|NZ_CP039261\|CRISPRCasFinder	1129196-1129228	33	NC_017468	Lactobacillus helveticus H10 plasmid pH10, complete sequence	25160-25192	0	1.0
NZ_CP039261_2	2.43\|1129196\|33\|NZ_CP039261\|CRISPRCasFinder	1129196-1129228	33	NC_002102	Lactobacillus helveticus DSM 20075 plasmid pLH1, complete sequence	19302-19334	0	1.0
NZ_CP039261_1	1.2\|1117600\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117600-1117632	33	NZ_CP021706	Lactobacillus johnsonii strain UMNLJ22 plasmid pUMNLJ22_2 sequence	2446-2478	1	0.97
NZ_CP039261_1	1.2\|1117600\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117600-1117632	33	NZ_CP021706	Lactobacillus johnsonii strain UMNLJ22 plasmid pUMNLJ22_2 sequence	15856-15888	1	0.97
NZ_CP039261_1	1.2\|1117600\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117600-1117632	33	NZ_CP021701	Lactobacillus johnsonii strain UMNLJ21 plasmid pUMNLJ21_1 sequence	4734-4766	1	0.97
NZ_CP039261_1	1.2\|1117600\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117600-1117632	33	NZ_CP021701	Lactobacillus johnsonii strain UMNLJ21 plasmid pUMNLJ21_1 sequence	18144-18176	1	0.97
NZ_CP039261_1	1.5\|1117783\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117783-1117815	33	CP024783	Lactobacillus johnsonii pf01 plasmid pLJPF01S, complete sequence	12345-12377	1	0.97
NZ_CP039261_2	2.8\|1128401\|32\|NZ_CP039261\|CRT	1128401-1128432	32	CP024783	Lactobacillus johnsonii pf01 plasmid pLJPF01S, complete sequence	12844-12875	1	0.969
NZ_CP039261_2	2.30\|1128401\|33\|NZ_CP039261\|CRISPRCasFinder,PILER-CR	1128401-1128433	33	CP024783	Lactobacillus johnsonii pf01 plasmid pLJPF01S, complete sequence	12843-12875	1	0.97
NZ_CP039261_1	1.5\|1117783\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117783-1117815	33	NZ_CP021701	Lactobacillus johnsonii strain UMNLJ21 plasmid pUMNLJ21_1 sequence	5264-5296	2	0.939
NZ_CP039261_1	1.5\|1117783\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117783-1117815	33	NZ_CP021701	Lactobacillus johnsonii strain UMNLJ21 plasmid pUMNLJ21_1 sequence	18674-18706	2	0.939
NZ_CP039261_1	1.5\|1117783\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117783-1117815	33	NZ_CP021706	Lactobacillus johnsonii strain UMNLJ22 plasmid pUMNLJ22_2 sequence	1916-1948	2	0.939
NZ_CP039261_1	1.5\|1117783\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117783-1117815	33	NZ_CP021706	Lactobacillus johnsonii strain UMNLJ22 plasmid pUMNLJ22_2 sequence	15326-15358	2	0.939
NZ_CP039261_2	2.3\|1128095\|32\|NZ_CP039261\|CRT	1128095-1128126	32	NC_005355	Lactobacillus prophage Lj965, complete genome	33651-33682	2	0.938
NZ_CP039261_2	2.3\|1128095\|32\|NZ_CP039261\|CRT	1128095-1128126	32	AY459535	Lactobacillus johnsonii prophage Lj965, complete genome	33651-33682	2	0.938
NZ_CP039261_2	2.21\|1129196\|32\|NZ_CP039261\|CRT,PILER-CR	1129196-1129227	32	NZ_CP015497	Lactobacillus helveticus strain FAM8105 plasmid pFAM8105, complete sequence	7748-7779	2	0.938
NZ_CP039261_2	2.25\|1128095\|33\|NZ_CP039261\|CRISPRCasFinder,PILER-CR	1128095-1128127	33	NC_005355	Lactobacillus prophage Lj965, complete genome	33650-33682	2	0.939
NZ_CP039261_2	2.25\|1128095\|33\|NZ_CP039261\|CRISPRCasFinder,PILER-CR	1128095-1128127	33	AY459535	Lactobacillus johnsonii prophage Lj965, complete genome	33650-33682	2	0.939
NZ_CP039261_2	2.43\|1129196\|33\|NZ_CP039261\|CRISPRCasFinder	1129196-1129228	33	NZ_CP015497	Lactobacillus helveticus strain FAM8105 plasmid pFAM8105, complete sequence	7748-7780	2	0.939
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP012834	Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 plasmid pCFSAN001588_001, complete sequence	30578-30609	6	0.812
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP045463	Salmonella enterica subsp. enterica serovar Anatum strain M-3851 plasmid p48k, complete sequence	21570-21601	6	0.812
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP045512	Salmonella enterica subsp. enterica serovar Anatum strain M-5360 plasmid p48k, complete sequence	21570-21601	6	0.812
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP030222	Salmonella enterica strain SA20021456 plasmid pSA20021456.3, complete sequence	5394-5425	6	0.812
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP016011	Salmonella enterica subsp. enterica serovar Newport strain CFSAN001660 plasmid pCFSAN001660, complete sequence	41934-41965	6	0.812
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NC_019343	Salmonella sp. 96A-29192 plasmid p96A29192-65, complete sequence	18277-18308	6	0.812
NZ_CP039261_2	2.22\|1129257\|32\|NZ_CP039261\|CRT,PILER-CR	1129257-1129288	32	NC_019507	Campylobacter phage CP21, complete genome	129592-129623	6	0.812
NZ_CP039261_2	2.22\|1129257\|32\|NZ_CP039261\|CRT,PILER-CR	1129257-1129288	32	MT932329	Campylobacter phage F379, complete genome	8130-8161	6	0.812
NZ_CP039261_2	2.22\|1129257\|32\|NZ_CP039261\|CRT,PILER-CR	1129257-1129288	32	HE815464	Campylobacter phage CP21 complete sequence	129592-129623	6	0.812
NZ_CP039261_2	2.3\|1128095\|32\|NZ_CP039261\|CRT	1128095-1128126	32	MK250021	Prevotella phage Lak-B2, complete genome	88913-88944	7	0.781
NZ_CP039261_2	2.3\|1128095\|32\|NZ_CP039261\|CRT	1128095-1128126	32	MK250024	Prevotella phage Lak-B5, complete genome	82581-82612	7	0.781
NZ_CP039261_2	2.3\|1128095\|32\|NZ_CP039261\|CRT	1128095-1128126	32	MK250028	Prevotella phage Lak-B9, complete genome	86707-86738	7	0.781
NZ_CP039261_2	2.3\|1128095\|32\|NZ_CP039261\|CRT	1128095-1128126	32	MK250023	Prevotella phage Lak-B4, complete genome	88812-88843	7	0.781
NZ_CP039261_2	2.3\|1128095\|32\|NZ_CP039261\|CRT	1128095-1128126	32	MK250025	Prevotella phage Lak-B6, complete genome	85766-85797	7	0.781
NZ_CP039261_2	2.3\|1128095\|32\|NZ_CP039261\|CRT	1128095-1128126	32	MK250022	Prevotella phage Lak-B3, complete genome	85781-85812	7	0.781
NZ_CP039261_2	2.3\|1128095\|32\|NZ_CP039261\|CRT	1128095-1128126	32	MK250027	Prevotella phage Lak-B8, complete genome	88945-88976	7	0.781
NZ_CP039261_2	2.3\|1128095\|32\|NZ_CP039261\|CRT	1128095-1128126	32	MK250026	Prevotella phage Lak-B7, complete genome	88945-88976	7	0.781
NZ_CP039261_2	2.3\|1128095\|32\|NZ_CP039261\|CRT	1128095-1128126	32	MK250020	Prevotella phage Lak-B1, complete genome	86687-86718	7	0.781
NZ_CP039261_2	2.44\|1129257\|33\|NZ_CP039261\|CRISPRCasFinder	1129257-1129289	33	NC_019507	Campylobacter phage CP21, complete genome	129592-129624	7	0.788
NZ_CP039261_2	2.44\|1129257\|33\|NZ_CP039261\|CRISPRCasFinder	1129257-1129289	33	MT932329	Campylobacter phage F379, complete genome	8130-8162	7	0.788
NZ_CP039261_2	2.44\|1129257\|33\|NZ_CP039261\|CRISPRCasFinder	1129257-1129289	33	HE815464	Campylobacter phage CP21 complete sequence	129592-129624	7	0.788
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP040783	Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence	294978-295010	8	0.758
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP007513	Bacillus bombysepticus plasmid pBb, complete genome	450815-450847	8	0.758
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	CP046512	Bacillus cereus strain JHU plasmid p1, complete sequence	233898-233930	8	0.758
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP042875	Bacillus cereus strain 09 plasmid unnamed1, complete sequence	466656-466688	8	0.758
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP050184	Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence	66605-66637	8	0.758
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	LC377538	Staphylococcus aureus plasmid pNTUH_3874 NTUH_3874 DNA, complete sequence	4923-4955	8	0.758
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP047806	Staphylococcus aureus strain UP_1654 plasmid unnamed, complete sequence	6605-6637	8	0.758
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	MN856028	Myoviridae sp. isolate 287, complete genome	4394-4425	8	0.75
NZ_CP039261_2	2.11\|1128584\|32\|NZ_CP039261\|CRT	1128584-1128615	32	NZ_CP018060	Moraxella catarrhalis strain CCRI-195ME plasmid unnamed, complete sequence	12792-12823	8	0.75
NZ_CP039261_2	2.17\|1128952\|32\|NZ_CP039261\|CRT,PILER-CR	1128952-1128983	32	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	483977-484008	8	0.75
NZ_CP039261_2	2.23\|1127973\|32\|NZ_CP039261\|CRISPRCasFinder	1127973-1128004	32	MT006235	Bifidobacterium phage BlindBasel1, complete genome	21997-22028	8	0.75
NZ_CP039261_2	2.29\|1128340\|33\|NZ_CP039261\|CRISPRCasFinder,PILER-CR	1128340-1128372	33	MN856028	Myoviridae sp. isolate 287, complete genome	4393-4425	8	0.758
NZ_CP039261_2	2.39\|1128952\|33\|NZ_CP039261\|CRISPRCasFinder	1128952-1128984	33	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	483977-484009	8	0.758
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	MN693898	Marine virus AFVG_250M937, complete genome	47126-47158	9	0.727
NZ_CP039261_2	2.3\|1128095\|32\|NZ_CP039261\|CRT	1128095-1128126	32	CP000522	Acinetobacter baumannii ATCC 17978 plasmid pAB1, complete sequence	11388-11419	9	0.719
NZ_CP039261_2	2.3\|1128095\|32\|NZ_CP039261\|CRT	1128095-1128126	32	NZ_CP034094	Acinetobacter baumannii strain A52 plasmid pA52-2, complete sequence	16183-16214	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	MN694094	Marine virus AFVG_250M290, complete genome	14113-14144	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	MN694457	Marine virus AFVG_250M832, complete genome	16849-16880	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	MN693808	Marine virus AFVG_250M831, complete genome	16844-16875	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	195244-195275	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_KP789020	Escherichia coli strain WCHEC13-8 plasmid pCTXM15, complete sequence	51489-51520	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP041338	Escherichia coli strain CCUG 73778 plasmid pSUH-1, complete sequence	118167-118198	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP042337	Escherichia coli strain GZ04-0086 plasmid pCTXM-GZ04, complete sequence	95238-95269	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP019561	Escherichia coli strain KSC1031 plasmid pMRGN1031, complete sequence	98942-98973	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NC_010470	Leuconostoc citreum KM20 plasmid pLCK1, complete sequence	6896-6927	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	CP054336	Escherichia coli strain SCU-120 plasmid pSCU-120-1, complete sequence	76296-76327	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP028587	Escherichia coli strain WCHEC4533 plasmid pCTXM15_000533, complete sequence	104031-104062	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	LN850163	Escherichia coli plasmid pI1-34TF, strain I1-34	92333-92364	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP029575	Escherichia coli strain DA33133 plasmid pDA33133-157, complete sequence	103269-103300	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	MT077881	Escherichia coli plasmid p2, complete sequence	102323-102354	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP010372	Escherichia coli strain 6409 plasmid p6409-151.583kb, complete sequence	49836-49867	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP049079	Escherichia coli strain p11A plasmid p11A_p2, complete sequence	41912-41943	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	MT077880	Escherichia coli plasmid p1, complete sequence	107054-107085	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	MN158990	Escherichia coli strain TREC4 plasmid pTREC4, complete sequence	137046-137077	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP027130	Escherichia coli strain AR_0372 plasmid unnamed1, complete sequence	99635-99666	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP032877	Escherichia coli strain WCHEC000837 plasmid pCTXM15_000837, complete sequence	28856-28887	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP009231	Escherichia coli strain CA14 plasmid pCA14, complete sequence	41897-41928	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP033823	Klebsiella sp. FDAARGOS_511 plasmid unnamed1, complete sequence	103292-103323	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP024831	Escherichia coli strain CREC-532 plasmid pCREC-532_1, complete sequence	123314-123345	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP040265	Escherichia coli strain 631 plasmid pEc631_2, complete sequence	56922-56953	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP024852	Escherichia coli strain AR_0006 plasmid tig00000164, complete sequence	77569-77600	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP009232	Escherichia coli strain CA28 plasmid pCA28, complete sequence	39239-39270	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP021204	Escherichia coli strain Z1002 plasmid p1002-4, complete sequence	48930-48961	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP022227	Escherichia coli strain WCHEC96200 plasmid pCTXM15_000200, complete sequence	104031-104062	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP023372	Escherichia coli strain 1283 plasmid p109, complete sequence	38575-38606	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP024860	Escherichia coli strain AR_0014 plasmid unitig_1_pilon, complete sequence	2417-2448	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP024816	Escherichia coli strain CREC-629 plasmid pCREC-629_1, complete sequence	141372-141403	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP024856	Escherichia coli strain AR_0011 plasmid tig00001011_pilon, complete sequence	4793-4824	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	LO017736	Escherichia coli str. 473 plasmid pRCS52, complete genome	20825-20856	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	LO017737	Escherichia coli str. 3249 plasmid RCS105_pI, complete genome	21610-21641	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	LO017738	Escherichia coli str. 690 plasmid pRCS57, complete genome	20833-20864	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP026403	Escherichia coli strain ECONIH4 plasmid pECO-816c, complete sequence	60366-60397	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	CP043745	Escherichia coli strain CVM N16EC0879 plasmid pN16EC0879-1, complete sequence	31381-31412	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	CP054458	Escherichia coli strain SCU-103 plasmid pSCU-103-1, complete sequence	87339-87370	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP016330	Leuconostoc garlicum strain KFRI01 plasmid unnamed1, complete sequence	23884-23915	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP048311	Escherichia coli strain 32-4 plasmid p32-4_A, complete sequence	138274-138305	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_LS992193	Escherichia coli isolate Escherichia coli str. TO217 plasmid 2, complete sequence	52359-52390	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP019028	Escherichia coli strain Ecol_881 plasmid pEC881_1, complete sequence	18319-18350	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP019001	Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_KPC, complete sequence	39239-39270	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP023378	Escherichia coli strain 127 plasmid p123, complete sequence	106702-106733	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP021880	Escherichia coli strain AR_0137 plasmid tig00001069_pilon, complete sequence	74317-74348	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP027551	Escherichia coli strain 2015C-4136CT1 plasmid unnamed, complete sequence	137923-137954	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP025708	Escherichia coli strain YDC107 plasmid pYDC107_184, complete sequence	105323-105354	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP011633	Klebsiella oxytoca strain CAV1374 plasmid pCAV1374-150, complete sequence	8732-8763	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP012197	Escherichia coli strain ECwhn14 plasmid pECwhn14, complete sequence	36815-36846	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	AP023228	Escherichia coli YJ3 plasmid pYJ3-a DNA, complete genome	51872-51903	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP027703	Escherichia coli strain 675SK2 plasmid p675SK2_B, complete sequence	114238-114269	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	AP022353	Escherichia coli E308 plasmid pE308_IMP6 DNA, complete sequence	57413-57444	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NC_010558	Escherichia coli plasmid pIP1206, complete sequence	56516-56547	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP040885	Escherichia coli strain K71-77 plasmid pK71-77-2, complete sequence	71554-71585	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NC_014615	Escherichia coli plasmid pETN48, complete sequence	22191-22222	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP033847	Escherichia coli strain FDAARGOS_497 plasmid unnamed1, complete sequence	21623-21654	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP021733	Escherichia coli strain AR_0114 plasmid unitig_1, complete sequence	108036-108067	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP018990	Escherichia coli strain Ecol_AZ146 plasmid pECAZ146_1, complete sequence	75292-75323	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_MK492688	Escherichia coli strain M63c plasmid pMB2, complete sequence	67399-67430	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP039405	Escherichia coli strain 377323_2f plasmid unnamed, complete sequence	59787-59818	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_MH454107	Escherichia coli strain 417957 plasmid p417957-CTXM, complete sequence	97402-97433	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_MF156714	Escherichia coli strain 15061806 plasmid p61806-dfrA, complete sequence	60793-60824	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP048360	Escherichia coli strain 53 plasmid p53_A, complete sequence	61877-61908	9	0.719
NZ_CP039261_2	2.7\|1128340\|32\|NZ_CP039261\|CRT	1128340-1128371	32	NZ_CP023835	Escherichia coli strain 4/2-1 plasmid p4_2_1.1, complete sequence	43230-43261	9	0.719
NZ_CP039261_2	2.9\|1128462\|32\|NZ_CP039261\|CRT	1128462-1128493	32	NZ_CP020426	Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence	69143-69174	9	0.719
NZ_CP039261_2	2.9\|1128462\|32\|NZ_CP039261\|CRT	1128462-1128493	32	NZ_CP029155	Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence	106676-106707	9	0.719
NZ_CP039261_2	2.9\|1128462\|32\|NZ_CP039261\|CRT	1128462-1128493	32	MF547662	Clostridioides phage LIBA6276, complete genome	60529-60560	9	0.719
NZ_CP039261_2	2.9\|1128462\|32\|NZ_CP039261\|CRT	1128462-1128493	32	MF547663	Clostridioides phage LIBA2945, complete genome	60379-60410	9	0.719
NZ_CP039261_2	2.9\|1128462\|32\|NZ_CP039261\|CRT	1128462-1128493	32	CP011970	Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence	52826-52857	9	0.719
NZ_CP039261_2	2.9\|1128462\|32\|NZ_CP039261\|CRT	1128462-1128493	32	LN681537	Clostridium phage phiCD211, complete genome	61688-61719	9	0.719
NZ_CP039261_2	2.21\|1129196\|32\|NZ_CP039261\|CRT,PILER-CR	1129196-1129227	32	NZ_CP024657	Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence	63042-63073	9	0.719
NZ_CP039261_2	2.21\|1129196\|32\|NZ_CP039261\|CRT,PILER-CR	1129196-1129227	32	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	21352-21383	9	0.719
NZ_CP039261_2	2.21\|1129196\|32\|NZ_CP039261\|CRT,PILER-CR	1129196-1129227	32	NZ_CP021437	Bacillus thuringiensis strain C15 plasmid pBMB240, complete sequence	43139-43170	9	0.719
NZ_CP039261_2	2.21\|1129196\|32\|NZ_CP039261\|CRT,PILER-CR	1129196-1129227	32	NZ_CP015254	Bacillus thuringiensis Bt18247 plasmid p81952, complete sequence	49195-49226	9	0.719
NZ_CP039261_2	2.23\|1127973\|32\|NZ_CP039261\|CRISPRCasFinder	1127973-1128004	32	MN855722	Bacteriophage sp. isolate 50, complete genome	24167-24198	9	0.719
NZ_CP039261_2	2.23\|1127973\|32\|NZ_CP039261\|CRISPRCasFinder	1127973-1128004	32	MT006234	Bifidobacterium phage BlindUri1, complete genome	22363-22394	9	0.719
NZ_CP039261_2	2.25\|1128095\|33\|NZ_CP039261\|CRISPRCasFinder,PILER-CR	1128095-1128127	33	CP000522	Acinetobacter baumannii ATCC 17978 plasmid pAB1, complete sequence	11388-11420	9	0.727
NZ_CP039261_2	2.25\|1128095\|33\|NZ_CP039261\|CRISPRCasFinder,PILER-CR	1128095-1128127	33	NZ_CP034094	Acinetobacter baumannii strain A52 plasmid pA52-2, complete sequence	16182-16214	9	0.727
NZ_CP039261_2	2.29\|1128340\|33\|NZ_CP039261\|CRISPRCasFinder,PILER-CR	1128340-1128372	33	MN694094	Marine virus AFVG_250M290, complete genome	14113-14145	9	0.727
NZ_CP039261_2	2.31\|1128462\|33\|NZ_CP039261\|CRISPRCasFinder,PILER-CR	1128462-1128494	33	NZ_CP020426	Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence	69143-69175	9	0.727
NZ_CP039261_2	2.31\|1128462\|33\|NZ_CP039261\|CRISPRCasFinder,PILER-CR	1128462-1128494	33	NZ_CP029155	Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence	106675-106707	9	0.727
NZ_CP039261_2	2.31\|1128462\|33\|NZ_CP039261\|CRISPRCasFinder,PILER-CR	1128462-1128494	33	MF547662	Clostridioides phage LIBA6276, complete genome	60528-60560	9	0.727
NZ_CP039261_2	2.31\|1128462\|33\|NZ_CP039261\|CRISPRCasFinder,PILER-CR	1128462-1128494	33	MF547663	Clostridioides phage LIBA2945, complete genome	60378-60410	9	0.727
NZ_CP039261_2	2.31\|1128462\|33\|NZ_CP039261\|CRISPRCasFinder,PILER-CR	1128462-1128494	33	CP011970	Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence	52825-52857	9	0.727
NZ_CP039261_2	2.31\|1128462\|33\|NZ_CP039261\|CRISPRCasFinder,PILER-CR	1128462-1128494	33	LN681537	Clostridium phage phiCD211, complete genome	61687-61719	9	0.727
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP018901	Campylobacter coli strain YH502 plasmid pCOS502, complete sequence	94291-94323	10	0.697
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP018901	Campylobacter coli strain YH502 plasmid pCOS502, complete sequence	97982-98014	10	0.697
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	156480-156512	10	0.697
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	63215-63247	10	0.697
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	66729-66761	10	0.697
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	68454-68486	10	0.697
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP044176	Campylobacter coli strain AR-0411 plasmid pAR-0411, complete sequence	62391-62423	10	0.697
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP025282	Campylobacter coli strain YH503 plasmid pCOS503, complete sequence	77009-77041	10	0.697
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP025282	Campylobacter coli strain YH503 plasmid pCOS503, complete sequence	78731-78763	10	0.697
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP025282	Campylobacter coli strain YH503 plasmid pCOS503, complete sequence	80274-80306	10	0.697
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP025282	Campylobacter coli strain YH503 plasmid pCOS503, complete sequence	83788-83820	10	0.697
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP048772	Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence	103918-103950	10	0.697
NZ_CP039261_1	1.3\|1117661\|33\|NZ_CP039261\|CRISPRCasFinder,CRT,PILER-CR	1117661-1117693	33	NZ_CP048772	Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence	105636-105668	10	0.697
NZ_CP039261_2	2.21\|1129196\|32\|NZ_CP039261\|CRT,PILER-CR	1129196-1129227	32	NC_009812	Listeria phage B025, complete genome	3970-4001	10	0.688
NZ_CP039261_2	2.22\|1129257\|32\|NZ_CP039261\|CRT,PILER-CR	1129257-1129288	32	NZ_CP026601	Clostridiaceae bacterium 14S0207 plasmid unnamed1, complete sequence	78719-78750	10	0.688
NZ_CP039261_2	2.29\|1128340\|33\|NZ_CP039261\|CRISPRCasFinder,PILER-CR	1128340-1128372	33	MN694457	Marine virus AFVG_250M832, complete genome	16849-16881	10	0.697
NZ_CP039261_2	2.29\|1128340\|33\|NZ_CP039261\|CRISPRCasFinder,PILER-CR	1128340-1128372	33	MN693808	Marine virus AFVG_250M831, complete genome	16844-16876	10	0.697
NZ_CP039261_2	2.43\|1129196\|33\|NZ_CP039261\|CRISPRCasFinder	1129196-1129228	33	NZ_CP021437	Bacillus thuringiensis strain C15 plasmid pBMB240, complete sequence	43139-43171	10	0.697
NZ_CP039261_2	2.43\|1129196\|33\|NZ_CP039261\|CRISPRCasFinder	1129196-1129228	33	NZ_CP015254	Bacillus thuringiensis Bt18247 plasmid p81952, complete sequence	49195-49227	10	0.697
NZ_CP039261_2	2.43\|1129196\|33\|NZ_CP039261\|CRISPRCasFinder	1129196-1129228	33	NZ_CP024657	Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence	63041-63073	10	0.697
NZ_CP039261_2	2.43\|1129196\|33\|NZ_CP039261\|CRISPRCasFinder	1129196-1129228	33	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	21351-21383	10	0.697
NZ_CP039261_2	2.43\|1129196\|33\|NZ_CP039261\|CRISPRCasFinder	1129196-1129228	33	NC_009812	Listeria phage B025, complete genome	3969-4001	10	0.697

1. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021701 (Lactobacillus johnsonii strain UMNLJ21 plasmid pUMNLJ21_1 sequence) position: , mismatch: 0, identity: 1.0

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
tgtgcaatttttgctttctctttgattttttaa	Protospacer
*********************************

2. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021701 (Lactobacillus johnsonii strain UMNLJ21 plasmid pUMNLJ21_1 sequence) position: , mismatch: 0, identity: 1.0

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
tgtgcaatttttgctttctctttgattttttaa	Protospacer
*********************************

3. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021706 (Lactobacillus johnsonii strain UMNLJ22 plasmid pUMNLJ22_2 sequence) position: , mismatch: 0, identity: 1.0

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
tgtgcaatttttgctttctctttgattttttaa	Protospacer
*********************************

4. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021706 (Lactobacillus johnsonii strain UMNLJ22 plasmid pUMNLJ22_2 sequence) position: , mismatch: 0, identity: 1.0

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
tgtgcaatttttgctttctctttgattttttaa	Protospacer
*********************************

5. spacer 2.21|1129196|32|NZ_CP039261|CRT,PILER-CR matches to NC_002102 (Lactobacillus helveticus DSM 20075 plasmid pLH1, complete sequence) position: , mismatch: 0, identity: 1.0

cttttgccttcttttttaacagcgttaatttt	CRISPR spacer
cttttgccttcttttttaacagcgttaatttt	Protospacer
********************************

6. spacer 2.21|1129196|32|NZ_CP039261|CRT,PILER-CR matches to NC_017468 (Lactobacillus helveticus H10 plasmid pH10, complete sequence) position: , mismatch: 0, identity: 1.0

cttttgccttcttttttaacagcgttaatttt	CRISPR spacer
cttttgccttcttttttaacagcgttaatttt	Protospacer
********************************

7. spacer 2.43|1129196|33|NZ_CP039261|CRISPRCasFinder matches to NC_017468 (Lactobacillus helveticus H10 plasmid pH10, complete sequence) position: , mismatch: 0, identity: 1.0

cttttgccttcttttttaacagcgttaatttta	CRISPR spacer
cttttgccttcttttttaacagcgttaatttta	Protospacer
*********************************

8. spacer 2.43|1129196|33|NZ_CP039261|CRISPRCasFinder matches to NC_002102 (Lactobacillus helveticus DSM 20075 plasmid pLH1, complete sequence) position: , mismatch: 0, identity: 1.0

cttttgccttcttttttaacagcgttaatttta	CRISPR spacer
cttttgccttcttttttaacagcgttaatttta	Protospacer
*********************************

9. spacer 1.2|1117600|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021706 (Lactobacillus johnsonii strain UMNLJ22 plasmid pUMNLJ22_2 sequence) position: , mismatch: 1, identity: 0.97

cagatcctaaggaaggcttaagtaaagaagtag	CRISPR spacer
cagatcctaaggaaggcctaagtaaagaagtag	Protospacer
*****************.***************

10. spacer 1.2|1117600|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021706 (Lactobacillus johnsonii strain UMNLJ22 plasmid pUMNLJ22_2 sequence) position: , mismatch: 1, identity: 0.97

cagatcctaaggaaggcttaagtaaagaagtag	CRISPR spacer
cagatcctaaggaaggcctaagtaaagaagtag	Protospacer
*****************.***************

11. spacer 1.2|1117600|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021701 (Lactobacillus johnsonii strain UMNLJ21 plasmid pUMNLJ21_1 sequence) position: , mismatch: 1, identity: 0.97

cagatcctaaggaaggcttaagtaaagaagtag	CRISPR spacer
cagatcctaaggaaggcctaagtaaagaagtag	Protospacer
*****************.***************

12. spacer 1.2|1117600|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021701 (Lactobacillus johnsonii strain UMNLJ21 plasmid pUMNLJ21_1 sequence) position: , mismatch: 1, identity: 0.97

cagatcctaaggaaggcttaagtaaagaagtag	CRISPR spacer
cagatcctaaggaaggcctaagtaaagaagtag	Protospacer
*****************.***************

13. spacer 1.5|1117783|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to CP024783 (Lactobacillus johnsonii pf01 plasmid pLJPF01S, complete sequence) position: , mismatch: 1, identity: 0.97

ggtctaattgcttcagatagctgtacgacagcg	CRISPR spacer
ggtctaattgcttcagatagctgtacaacagcg	Protospacer
**************************.******

14. spacer 2.8|1128401|32|NZ_CP039261|CRT matches to CP024783 (Lactobacillus johnsonii pf01 plasmid pLJPF01S, complete sequence) position: , mismatch: 1, identity: 0.969

taaggtgcgcagcttccccaactctacaccca	CRISPR spacer
taaggtgcgcagcttccccaactctgcaccca	Protospacer
*************************.******

15. spacer 2.30|1128401|33|NZ_CP039261|CRISPRCasFinder,PILER-CR matches to CP024783 (Lactobacillus johnsonii pf01 plasmid pLJPF01S, complete sequence) position: , mismatch: 1, identity: 0.97

taaggtgcgcagcttccccaactctacacccag	CRISPR spacer
taaggtgcgcagcttccccaactctgcacccag	Protospacer
*************************.*******

16. spacer 1.5|1117783|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021701 (Lactobacillus johnsonii strain UMNLJ21 plasmid pUMNLJ21_1 sequence) position: , mismatch: 2, identity: 0.939

ggtctaattgcttcagatagctgtacgacagcg	CRISPR spacer
ggtctaattgcttcagataactgtacgacagca	Protospacer
*******************.************.

17. spacer 1.5|1117783|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021701 (Lactobacillus johnsonii strain UMNLJ21 plasmid pUMNLJ21_1 sequence) position: , mismatch: 2, identity: 0.939

ggtctaattgcttcagatagctgtacgacagcg	CRISPR spacer
ggtctaattgcttcagataactgtacgacagca	Protospacer
*******************.************.

18. spacer 1.5|1117783|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021706 (Lactobacillus johnsonii strain UMNLJ22 plasmid pUMNLJ22_2 sequence) position: , mismatch: 2, identity: 0.939

ggtctaattgcttcagatagctgtacgacagcg	CRISPR spacer
ggtctaattgcttcagataactgtacgacagca	Protospacer
*******************.************.

19. spacer 1.5|1117783|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021706 (Lactobacillus johnsonii strain UMNLJ22 plasmid pUMNLJ22_2 sequence) position: , mismatch: 2, identity: 0.939

ggtctaattgcttcagatagctgtacgacagcg	CRISPR spacer
ggtctaattgcttcagataactgtacgacagca	Protospacer
*******************.************.

20. spacer 2.3|1128095|32|NZ_CP039261|CRT matches to NC_005355 (Lactobacillus prophage Lj965, complete genome) position: , mismatch: 2, identity: 0.938

gcagtccagtaacaatatttttctggtcatta	CRISPR spacer
gcagtccagtaacaatatttttctgttcattt	Protospacer
************************* *****

21. spacer 2.3|1128095|32|NZ_CP039261|CRT matches to AY459535 (Lactobacillus johnsonii prophage Lj965, complete genome) position: , mismatch: 2, identity: 0.938

gcagtccagtaacaatatttttctggtcatta	CRISPR spacer
gcagtccagtaacaatatttttctgttcattt	Protospacer
************************* *****

22. spacer 2.21|1129196|32|NZ_CP039261|CRT,PILER-CR matches to NZ_CP015497 (Lactobacillus helveticus strain FAM8105 plasmid pFAM8105, complete sequence) position: , mismatch: 2, identity: 0.938

cttttgccttcttttttaacagcgttaatttt	CRISPR spacer
ctcttgccctcttttttaacagcgttaatttt	Protospacer
**.*****.***********************

23. spacer 2.25|1128095|33|NZ_CP039261|CRISPRCasFinder,PILER-CR matches to NC_005355 (Lactobacillus prophage Lj965, complete genome) position: , mismatch: 2, identity: 0.939

gcagtccagtaacaatatttttctggtcattaa	CRISPR spacer
gcagtccagtaacaatatttttctgttcattta	Protospacer
************************* ***** *

24. spacer 2.25|1128095|33|NZ_CP039261|CRISPRCasFinder,PILER-CR matches to AY459535 (Lactobacillus johnsonii prophage Lj965, complete genome) position: , mismatch: 2, identity: 0.939

gcagtccagtaacaatatttttctggtcattaa	CRISPR spacer
gcagtccagtaacaatatttttctgttcattta	Protospacer
************************* ***** *

25. spacer 2.43|1129196|33|NZ_CP039261|CRISPRCasFinder matches to NZ_CP015497 (Lactobacillus helveticus strain FAM8105 plasmid pFAM8105, complete sequence) position: , mismatch: 2, identity: 0.939

cttttgccttcttttttaacagcgttaatttta	CRISPR spacer
ctcttgccctcttttttaacagcgttaatttta	Protospacer
**.*****.************************

26. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP012834 (Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 plasmid pCFSAN001588_001, complete sequence) position: , mismatch: 6, identity: 0.812

-acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gatatt-cctgaaggtgatacttcaaaaattga	Protospacer
 *.*** .*********.**** ******** *

27. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP045463 (Salmonella enterica subsp. enterica serovar Anatum strain M-3851 plasmid p48k, complete sequence) position: , mismatch: 6, identity: 0.812

-acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gatatt-cctgaaggtgatacttcaaaaattga	Protospacer
 *.*** .*********.**** ******** *

28. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP045512 (Salmonella enterica subsp. enterica serovar Anatum strain M-5360 plasmid p48k, complete sequence) position: , mismatch: 6, identity: 0.812

-acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gatatt-cctgaaggtgatacttcaaaaattga	Protospacer
 *.*** .*********.**** ******** *

29. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP030222 (Salmonella enterica strain SA20021456 plasmid pSA20021456.3, complete sequence) position: , mismatch: 6, identity: 0.812

-acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gatatt-cctgaaggtgatacttcaaaaattga	Protospacer
 *.*** .*********.**** ******** *

30. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP016011 (Salmonella enterica subsp. enterica serovar Newport strain CFSAN001660 plasmid pCFSAN001660, complete sequence) position: , mismatch: 6, identity: 0.812

-acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gatatt-cctgaaggtgatacttcaaaaattga	Protospacer
 *.*** .*********.**** ******** *

31. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NC_019343 (Salmonella sp. 96A-29192 plasmid p96A29192-65, complete sequence) position: , mismatch: 6, identity: 0.812

-acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gatatt-cctgaaggtgatacttcaaaaattga	Protospacer
 *.*** .*********.**** ******** *

32. spacer 2.22|1129257|32|NZ_CP039261|CRT,PILER-CR matches to NC_019507 (Campylobacter phage CP21, complete genome) position: , mismatch: 6, identity: 0.812

taaagtatacggtttatatgtttct----aagttat	CRISPR spacer
taaagtttacggtttatatggttctcgcaaag----	Protospacer
****** ************* ****    ***

33. spacer 2.22|1129257|32|NZ_CP039261|CRT,PILER-CR matches to MT932329 (Campylobacter phage F379, complete genome) position: , mismatch: 6, identity: 0.812

taaagtatacggtttatatgtttct----aagttat	CRISPR spacer
taaagtttacggtttatatggttctcgcaaag----	Protospacer
****** ************* ****    ***

34. spacer 2.22|1129257|32|NZ_CP039261|CRT,PILER-CR matches to HE815464 (Campylobacter phage CP21 complete sequence) position: , mismatch: 6, identity: 0.812

taaagtatacggtttatatgtttct----aagttat	CRISPR spacer
taaagtttacggtttatatggttctcgcaaag----	Protospacer
****** ************* ****    ***

35. spacer 2.3|1128095|32|NZ_CP039261|CRT matches to MK250021 (Prevotella phage Lak-B2, complete genome) position: , mismatch: 7, identity: 0.781

gcagtccag----taacaatatttttctggtcatta	CRISPR spacer
----tccaataattaacaatatttttcttatcatta	Protospacer
    ****.    *************** .******

36. spacer 2.3|1128095|32|NZ_CP039261|CRT matches to MK250024 (Prevotella phage Lak-B5, complete genome) position: , mismatch: 7, identity: 0.781

gcagtccag----taacaatatttttctggtcatta	CRISPR spacer
----tccaataattaacaatatttttcttatcatta	Protospacer
    ****.    *************** .******

37. spacer 2.3|1128095|32|NZ_CP039261|CRT matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 7, identity: 0.781

gcagtccag----taacaatatttttctggtcatta	CRISPR spacer
----tccaataattaacaatatttttcttatcatta	Protospacer
    ****.    *************** .******

38. spacer 2.3|1128095|32|NZ_CP039261|CRT matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 7, identity: 0.781

gcagtccag----taacaatatttttctggtcatta	CRISPR spacer
----tccaataattaacaatatttttcttatcatta	Protospacer
    ****.    *************** .******

39. spacer 2.3|1128095|32|NZ_CP039261|CRT matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 7, identity: 0.781

gcagtccag----taacaatatttttctggtcatta	CRISPR spacer
----tccaataattaacaatatttttcttatcatta	Protospacer
    ****.    *************** .******

40. spacer 2.3|1128095|32|NZ_CP039261|CRT matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 7, identity: 0.781

gcagtccag----taacaatatttttctggtcatta	CRISPR spacer
----tccaataattaacaatatttttcttatcatta	Protospacer
    ****.    *************** .******

41. spacer 2.3|1128095|32|NZ_CP039261|CRT matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 7, identity: 0.781

gcagtccag----taacaatatttttctggtcatta	CRISPR spacer
----tccaataattaacaatatttttcttatcatta	Protospacer
    ****.    *************** .******

42. spacer 2.3|1128095|32|NZ_CP039261|CRT matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 7, identity: 0.781

gcagtccag----taacaatatttttctggtcatta	CRISPR spacer
----tccaataattaacaatatttttcttatcatta	Protospacer
    ****.    *************** .******

43. spacer 2.3|1128095|32|NZ_CP039261|CRT matches to MK250020 (Prevotella phage Lak-B1, complete genome) position: , mismatch: 7, identity: 0.781

gcagtccag----taacaatatttttctggtcatta	CRISPR spacer
----tccaataattaacaatatttttcttatcatta	Protospacer
    ****.    *************** .******

44. spacer 2.44|1129257|33|NZ_CP039261|CRISPRCasFinder matches to NC_019507 (Campylobacter phage CP21, complete genome) position: , mismatch: 7, identity: 0.788

taaagtatacggtttatatgtttct----aagttata	CRISPR spacer
taaagtttacggtttatatggttctcgcaaagc----	Protospacer
****** ************* ****    ***.

45. spacer 2.44|1129257|33|NZ_CP039261|CRISPRCasFinder matches to MT932329 (Campylobacter phage F379, complete genome) position: , mismatch: 7, identity: 0.788

taaagtatacggtttatatgtttct----aagttata	CRISPR spacer
taaagtttacggtttatatggttctcgcaaagc----	Protospacer
****** ************* ****    ***.

46. spacer 2.44|1129257|33|NZ_CP039261|CRISPRCasFinder matches to HE815464 (Campylobacter phage CP21 complete sequence) position: , mismatch: 7, identity: 0.788

taaagtatacggtttatatgtttct----aagttata	CRISPR spacer
taaagtttacggtttatatggttctcgcaaagc----	Protospacer
****** ************* ****    ***.

47. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040783 (Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.758

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
atctcaatttttgctttcccttttattttgaaa	Protospacer
  . **************.**** *****  **

48. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007513 (Bacillus bombysepticus plasmid pBb, complete genome) position: , mismatch: 8, identity: 0.758

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
atctcaatttttgctttcccttttattttgaaa	Protospacer
  . **************.**** *****  **

49. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to CP046512 (Bacillus cereus strain JHU plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.758

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
atctcaatttttgctttcccttttattttgaaa	Protospacer
  . **************.**** *****  **

50. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042875 (Bacillus cereus strain 09 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
atctcaatttttgctttcccttttattttgaaa	Protospacer
  . **************.**** *****  **

51. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050184 (Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence) position: , mismatch: 8, identity: 0.758

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
atctcaatttttgctttcccttttattttgaaa	Protospacer
  . **************.**** *****  **

52. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to LC377538 (Staphylococcus aureus plasmid pNTUH_3874 NTUH_3874 DNA, complete sequence) position: , mismatch: 8, identity: 0.758

tgtgcaa---tttttgctttctctttgattttttaa	CRISPR spacer
---ataaatgtttctgctttctttttgattttttta	Protospacer
   ..**   ***.********.*********** *

53. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047806 (Staphylococcus aureus strain UP_1654 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

tgtgcaa---tttttgctttctctttgattttttaa	CRISPR spacer
---ataaatgtttctgctttctttttgattttttta	Protospacer
   ..**   ***.********.*********** *

54. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to MN856028 (Myoviridae sp. isolate 287, complete genome) position: , mismatch: 8, identity: 0.75

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
tcttctactgaaggtagcactgcaaaaatttt	Protospacer
 * *.  ********.*.*************

55. spacer 2.11|1128584|32|NZ_CP039261|CRT matches to NZ_CP018060 (Moraxella catarrhalis strain CCRI-195ME plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ttcgactgtaatgctaccaccgtcaataatta	CRISPR spacer
tctcactgtaatgctatcaccctcaatttttg	Protospacer
*.. ************.**** *****  **.

56. spacer 2.17|1128952|32|NZ_CP039261|CRT,PILER-CR matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 8, identity: 0.75

ttttggtaattcaactgttagcctaggcatta	CRISPR spacer
acctggtaattcaactgttatcccaggaacca	Protospacer
 ..***************** **.*** *..*

57. spacer 2.23|1127973|32|NZ_CP039261|CRISPRCasFinder matches to MT006235 (Bifidobacterium phage BlindBasel1, complete genome) position: , mismatch: 8, identity: 0.75

ttggctacttcatcagccaagttagaggaata	CRISPR spacer
attactgaatcagcagccaagatagaggaata	Protospacer
 * .**.  *** ******** **********

58. spacer 2.29|1128340|33|NZ_CP039261|CRISPRCasFinder,PILER-CR matches to MN856028 (Myoviridae sp. isolate 287, complete genome) position: , mismatch: 8, identity: 0.758

acattatctgaaggtggtactgcaaaaatttaa	CRISPR spacer
tcttctactgaaggtagcactgcaaaaatttta	Protospacer
 * *.  ********.*.************* *

59. spacer 2.39|1128952|33|NZ_CP039261|CRISPRCasFinder matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 8, identity: 0.758

ttttggtaattcaactgttagcctaggcattaa	CRISPR spacer
acctggtaattcaactgttatcccaggaaccaa	Protospacer
 ..***************** **.*** *..**

60. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to MN693898 (Marine virus AFVG_250M937, complete genome) position: , mismatch: 9, identity: 0.727

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
cctgcaatttttcctttctcttttatataatct	Protospacer
. ********** ********** ** *  *

61. spacer 2.3|1128095|32|NZ_CP039261|CRT matches to CP000522 (Acinetobacter baumannii ATCC 17978 plasmid pAB1, complete sequence) position: , mismatch: 9, identity: 0.719

gcagtccagtaacaatatttttctggtcatta	CRISPR spacer
atacaataataataatatttttctgatcatta	Protospacer
..*   .*.***.************.******

62. spacer 2.3|1128095|32|NZ_CP039261|CRT matches to NZ_CP034094 (Acinetobacter baumannii strain A52 plasmid pA52-2, complete sequence) position: , mismatch: 9, identity: 0.719

gcagtccagtaacaatatttttctggtcatta	CRISPR spacer
atacaataataataatatttttctgatcatta	Protospacer
..*   .*.***.************.******

63. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to MN694094 (Marine virus AFVG_250M290, complete genome) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
aatgcatctgtaggtggtactgctaaaataac	Protospacer
*   .***** ************ *****

64. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to MN694457 (Marine virus AFVG_250M832, complete genome) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
tactggattgtaggtggtactgcaaaaatcta	Protospacer
   * . .** ******************.**

65. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to MN693808 (Marine virus AFVG_250M831, complete genome) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
tactggattgtaggtggtactgcaaaaatcta	Protospacer
   * . .** ******************.**

66. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

67. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_KP789020 (Escherichia coli strain WCHEC13-8 plasmid pCTXM15, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

68. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP041338 (Escherichia coli strain CCUG 73778 plasmid pSUH-1, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

69. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP042337 (Escherichia coli strain GZ04-0086 plasmid pCTXM-GZ04, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

70. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP019561 (Escherichia coli strain KSC1031 plasmid pMRGN1031, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

71. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NC_010470 (Leuconostoc citreum KM20 plasmid pLCK1, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
attctggaagaagctggtactgaaaaaattta	Protospacer
*. .*.   **** ******** *********

72. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to CP054336 (Escherichia coli strain SCU-120 plasmid pSCU-120-1, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

73. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP028587 (Escherichia coli strain WCHEC4533 plasmid pCTXM15_000533, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

74. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to LN850163 (Escherichia coli plasmid pI1-34TF, strain I1-34) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

75. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP029575 (Escherichia coli strain DA33133 plasmid pDA33133-157, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

76. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to MT077881 (Escherichia coli plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

77. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP010372 (Escherichia coli strain 6409 plasmid p6409-151.583kb, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

78. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP049079 (Escherichia coli strain p11A plasmid p11A_p2, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

79. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to MT077880 (Escherichia coli plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

80. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to MN158990 (Escherichia coli strain TREC4 plasmid pTREC4, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

81. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP027130 (Escherichia coli strain AR_0372 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

82. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP032877 (Escherichia coli strain WCHEC000837 plasmid pCTXM15_000837, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

83. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP009231 (Escherichia coli strain CA14 plasmid pCA14, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

84. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP033823 (Klebsiella sp. FDAARGOS_511 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggtggtactgctaaaatcta	Protospacer
.*  *. . ************** *****.**

85. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP024831 (Escherichia coli strain CREC-532 plasmid pCREC-532_1, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

86. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP040265 (Escherichia coli strain 631 plasmid pEc631_2, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

87. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP024852 (Escherichia coli strain AR_0006 plasmid tig00000164, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

88. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP009232 (Escherichia coli strain CA28 plasmid pCA28, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

89. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP021204 (Escherichia coli strain Z1002 plasmid p1002-4, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

90. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP022227 (Escherichia coli strain WCHEC96200 plasmid pCTXM15_000200, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

91. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP023372 (Escherichia coli strain 1283 plasmid p109, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

92. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP024860 (Escherichia coli strain AR_0014 plasmid unitig_1_pilon, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

93. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP024816 (Escherichia coli strain CREC-629 plasmid pCREC-629_1, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

94. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP024856 (Escherichia coli strain AR_0011 plasmid tig00001011_pilon, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

95. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to LO017736 (Escherichia coli str. 473 plasmid pRCS52, complete genome) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

96. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to LO017737 (Escherichia coli str. 3249 plasmid RCS105_pI, complete genome) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

97. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to LO017738 (Escherichia coli str. 690 plasmid pRCS57, complete genome) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

98. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP026403 (Escherichia coli strain ECONIH4 plasmid pECO-816c, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

99. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to CP043745 (Escherichia coli strain CVM N16EC0879 plasmid pN16EC0879-1, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

100. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to CP054458 (Escherichia coli strain SCU-103 plasmid pSCU-103-1, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

101. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP016330 (Leuconostoc garlicum strain KFRI01 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
attctggaagaagctggtactgaaaaaattta	Protospacer
*. .*.   **** ******** *********

102. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP048311 (Escherichia coli strain 32-4 plasmid p32-4_A, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

103. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_LS992193 (Escherichia coli isolate Escherichia coli str. TO217 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

104. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP019028 (Escherichia coli strain Ecol_881 plasmid pEC881_1, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

105. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP019001 (Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_KPC, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

106. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP023378 (Escherichia coli strain 127 plasmid p123, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

107. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP021880 (Escherichia coli strain AR_0137 plasmid tig00001069_pilon, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

108. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP027551 (Escherichia coli strain 2015C-4136CT1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggtggcacagcaaaaattta	Protospacer
.*  *. . ********.** ***********

109. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP025708 (Escherichia coli strain YDC107 plasmid pYDC107_184, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

110. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP011633 (Klebsiella oxytoca strain CAV1374 plasmid pCAV1374-150, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggtggtactgctaaaatcta	Protospacer
.*  *. . ************** *****.**

111. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP012197 (Escherichia coli strain ECwhn14 plasmid pECwhn14, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

112. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to AP023228 (Escherichia coli YJ3 plasmid pYJ3-a DNA, complete genome) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

113. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP027703 (Escherichia coli strain 675SK2 plasmid p675SK2_B, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

114. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to AP022353 (Escherichia coli E308 plasmid pE308_IMP6 DNA, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

115. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NC_010558 (Escherichia coli plasmid pIP1206, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

116. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP040885 (Escherichia coli strain K71-77 plasmid pK71-77-2, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

117. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NC_014615 (Escherichia coli plasmid pETN48, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

118. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP033847 (Escherichia coli strain FDAARGOS_497 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

119. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP021733 (Escherichia coli strain AR_0114 plasmid unitig_1, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

120. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP018990 (Escherichia coli strain Ecol_AZ146 plasmid pECAZ146_1, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

121. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_MK492688 (Escherichia coli strain M63c plasmid pMB2, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

122. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP039405 (Escherichia coli strain 377323_2f plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

123. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_MH454107 (Escherichia coli strain 417957 plasmid p417957-CTXM, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

124. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_MF156714 (Escherichia coli strain 15061806 plasmid p61806-dfrA, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

125. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP048360 (Escherichia coli strain 53 plasmid p53_A, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

126. spacer 2.7|1128340|32|NZ_CP039261|CRT matches to NZ_CP023835 (Escherichia coli strain 4/2-1 plasmid p4_2_1.1, complete sequence) position: , mismatch: 9, identity: 0.719

acattatctgaaggtggtactgcaaaaattta	CRISPR spacer
gccatgatggaaggcggtacagcaaaaattta	Protospacer
.*  *. . *****.***** ***********

127. spacer 2.9|1128462|32|NZ_CP039261|CRT matches to NZ_CP020426 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ctcgtcaagagttgagtaatattcaagctgat	CRISPR spacer
gtcttcaagagttgagaaatattcatatacag	Protospacer
 ** ************ ******** ..  *

128. spacer 2.9|1128462|32|NZ_CP039261|CRT matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ctcgtcaagagttgagtaatattcaagctgat	CRISPR spacer
gtcttcaagagttgagaaatattcatatacag	Protospacer
 ** ************ ******** ..  *

129. spacer 2.9|1128462|32|NZ_CP039261|CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 9, identity: 0.719

ctcgtcaagagttgagtaatattcaagctgat	CRISPR spacer
gtcttcaagagttgagaaatattcatatacag	Protospacer
 ** ************ ******** ..  *

130. spacer 2.9|1128462|32|NZ_CP039261|CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 9, identity: 0.719

ctcgtcaagagttgagtaatattcaagctgat	CRISPR spacer
gtcttcaagagttgagaaatattcatatacag	Protospacer
 ** ************ ******** ..  *

131. spacer 2.9|1128462|32|NZ_CP039261|CRT matches to CP011970 (Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence) position: , mismatch: 9, identity: 0.719

ctcgtcaagagttgagtaatattcaagctgat	CRISPR spacer
gtcttcaagagttgagaaatattcatatacag	Protospacer
 ** ************ ******** ..  *

132. spacer 2.9|1128462|32|NZ_CP039261|CRT matches to LN681537 (Clostridium phage phiCD211, complete genome) position: , mismatch: 9, identity: 0.719

ctcgtcaagagttgagtaatattcaagctgat	CRISPR spacer
gtcttcaagagttgagaaatattcatatacag	Protospacer
 ** ************ ******** ..  *

133. spacer 2.21|1129196|32|NZ_CP039261|CRT,PILER-CR matches to NZ_CP024657 (Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence) position: , mismatch: 9, identity: 0.719

cttttgccttcttttttaacagcgttaatttt	CRISPR spacer
aaaatcgcttcttttttttcagcgttaatttc	Protospacer
    *  **********  ************.

134. spacer 2.21|1129196|32|NZ_CP039261|CRT,PILER-CR matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 9, identity: 0.719

cttttgccttcttttttaacagcgttaatttt	CRISPR spacer
aaaatcgcttcttttttttcagcgttaatttc	Protospacer
    *  **********  ************.

135. spacer 2.21|1129196|32|NZ_CP039261|CRT,PILER-CR matches to NZ_CP021437 (Bacillus thuringiensis strain C15 plasmid pBMB240, complete sequence) position: , mismatch: 9, identity: 0.719

cttttgccttcttttttaacagcgttaatttt	CRISPR spacer
aaaatcgcttcttttttttcagcgttaatttc	Protospacer
    *  **********  ************.

136. spacer 2.21|1129196|32|NZ_CP039261|CRT,PILER-CR matches to NZ_CP015254 (Bacillus thuringiensis Bt18247 plasmid p81952, complete sequence) position: , mismatch: 9, identity: 0.719

cttttgccttcttttttaacagcgttaatttt	CRISPR spacer
aaaatcgcttcttttttttcagcgttaatttc	Protospacer
    *  **********  ************.

137. spacer 2.23|1127973|32|NZ_CP039261|CRISPRCasFinder matches to MN855722 (Bacteriophage sp. isolate 50, complete genome) position: , mismatch: 9, identity: 0.719

ttggctacttcatcagccaagttagaggaata	CRISPR spacer
attaccgaatcagcagccaagatagaggaata	Protospacer
 * .*..  *** ******** **********

138. spacer 2.23|1127973|32|NZ_CP039261|CRISPRCasFinder matches to MT006234 (Bifidobacterium phage BlindUri1, complete genome) position: , mismatch: 9, identity: 0.719

ttggctacttcatcagccaagttagaggaata	CRISPR spacer
attaccgaatcagcagccaagatagaggaata	Protospacer
 * .*..  *** ******** **********

139. spacer 2.25|1128095|33|NZ_CP039261|CRISPRCasFinder,PILER-CR matches to CP000522 (Acinetobacter baumannii ATCC 17978 plasmid pAB1, complete sequence) position: , mismatch: 9, identity: 0.727

gcagtccagtaacaatatttttctggtcattaa	CRISPR spacer
atacaataataataatatttttctgatcattaa	Protospacer
..*   .*.***.************.*******

140. spacer 2.25|1128095|33|NZ_CP039261|CRISPRCasFinder,PILER-CR matches to NZ_CP034094 (Acinetobacter baumannii strain A52 plasmid pA52-2, complete sequence) position: , mismatch: 9, identity: 0.727

gcagtccagtaacaatatttttctggtcattaa	CRISPR spacer
atacaataataataatatttttctgatcattaa	Protospacer
..*   .*.***.************.*******

141. spacer 2.29|1128340|33|NZ_CP039261|CRISPRCasFinder,PILER-CR matches to MN694094 (Marine virus AFVG_250M290, complete genome) position: , mismatch: 9, identity: 0.727

acattatctgaaggtggtactgcaaaaatttaa	CRISPR spacer
aatgcatctgtaggtggtactgctaaaataaca	Protospacer
*   .***** ************ *****   *

142. spacer 2.31|1128462|33|NZ_CP039261|CRISPRCasFinder,PILER-CR matches to NZ_CP020426 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.727

ctcgtcaagagttgagtaatattcaagctgata	CRISPR spacer
gtcttcaagagttgagaaatattcatatacaga	Protospacer
 ** ************ ******** ..  * *

143. spacer 2.31|1128462|33|NZ_CP039261|CRISPRCasFinder,PILER-CR matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

ctcgtcaagagttgagtaatattcaagctgata	CRISPR spacer
gtcttcaagagttgagaaatattcatatacaga	Protospacer
 ** ************ ******** ..  * *

144. spacer 2.31|1128462|33|NZ_CP039261|CRISPRCasFinder,PILER-CR matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 9, identity: 0.727

ctcgtcaagagttgagtaatattcaagctgata	CRISPR spacer
gtcttcaagagttgagaaatattcatatacaga	Protospacer
 ** ************ ******** ..  * *

145. spacer 2.31|1128462|33|NZ_CP039261|CRISPRCasFinder,PILER-CR matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 9, identity: 0.727

ctcgtcaagagttgagtaatattcaagctgata	CRISPR spacer
gtcttcaagagttgagaaatattcatatacaga	Protospacer
 ** ************ ******** ..  * *

146. spacer 2.31|1128462|33|NZ_CP039261|CRISPRCasFinder,PILER-CR matches to CP011970 (Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence) position: , mismatch: 9, identity: 0.727

ctcgtcaagagttgagtaatattcaagctgata	CRISPR spacer
gtcttcaagagttgagaaatattcatatacaga	Protospacer
 ** ************ ******** ..  * *

147. spacer 2.31|1128462|33|NZ_CP039261|CRISPRCasFinder,PILER-CR matches to LN681537 (Clostridium phage phiCD211, complete genome) position: , mismatch: 9, identity: 0.727

ctcgtcaagagttgagtaatattcaagctgata	CRISPR spacer
gtcttcaagagttgagaaatattcatatacaga	Protospacer
 ** ************ ******** ..  * *

148. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018901 (Campylobacter coli strain YH502 plasmid pCOS502, complete sequence) position: , mismatch: 10, identity: 0.697

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
aaaagcatttttgctttctctttacttttttct	Protospacer
 . .  *****************. ******

149. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018901 (Campylobacter coli strain YH502 plasmid pCOS502, complete sequence) position: , mismatch: 10, identity: 0.697

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
aaaagcatttttgctttctctttacttttttct	Protospacer
 . .  *****************. ******

150. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 10, identity: 0.697

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
aaaagcatttttgctttctctttacttttttct	Protospacer
 . .  *****************. ******

151. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 10, identity: 0.697

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
aaaagcatttttgctttctctttacttttttct	Protospacer
 . .  *****************. ******

152. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 10, identity: 0.697

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
aaaagcatttttgctttctctttacttttttct	Protospacer
 . .  *****************. ******

153. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 10, identity: 0.697

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
aaaagcatttttgctttctctttacttttttct	Protospacer
 . .  *****************. ******

154. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044176 (Campylobacter coli strain AR-0411 plasmid pAR-0411, complete sequence) position: , mismatch: 10, identity: 0.697

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
aaaagcatttttgctttctctttacttttttct	Protospacer
 . .  *****************. ******

155. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025282 (Campylobacter coli strain YH503 plasmid pCOS503, complete sequence) position: , mismatch: 10, identity: 0.697

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
aaaagcatttttgctttctctttacttttttct	Protospacer
 . .  *****************. ******

156. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025282 (Campylobacter coli strain YH503 plasmid pCOS503, complete sequence) position: , mismatch: 10, identity: 0.697

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
aaaagcatttttgctttctctttacttttttct	Protospacer
 . .  *****************. ******

157. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025282 (Campylobacter coli strain YH503 plasmid pCOS503, complete sequence) position: , mismatch: 10, identity: 0.697

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
aaaagcatttttgctttctctttacttttttct	Protospacer
 . .  *****************. ******

158. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025282 (Campylobacter coli strain YH503 plasmid pCOS503, complete sequence) position: , mismatch: 10, identity: 0.697

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
aaaagcatttttgctttctctttacttttttct	Protospacer
 . .  *****************. ******

159. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048772 (Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence) position: , mismatch: 10, identity: 0.697

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
aaaagcatttttgctttctctttacttttttct	Protospacer
 . .  *****************. ******

160. spacer 1.3|1117661|33|NZ_CP039261|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048772 (Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence) position: , mismatch: 10, identity: 0.697

tgtgcaatttttgctttctctttgattttttaa	CRISPR spacer
aaaagcatttttgctttctctttacttttttct	Protospacer
 . .  *****************. ******

161. spacer 2.21|1129196|32|NZ_CP039261|CRT,PILER-CR matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 10, identity: 0.688

cttttgccttcttttttaacagcgttaatttt	CRISPR spacer
tgcgtgtcttcgtttttaacagcgttaacaaa	Protospacer
. . **.**** ****************.

162. spacer 2.22|1129257|32|NZ_CP039261|CRT,PILER-CR matches to NZ_CP026601 (Clostridiaceae bacterium 14S0207 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

taaagtatacggtttatatgtttctaagttat	CRISPR spacer
taaagtatacggtttttatatttttttcccca	Protospacer
*************** ***.***.*   ..

163. spacer 2.29|1128340|33|NZ_CP039261|CRISPRCasFinder,PILER-CR matches to MN694457 (Marine virus AFVG_250M832, complete genome) position: , mismatch: 10, identity: 0.697

acattatctgaaggtggtactgcaaaaatttaa	CRISPR spacer
tactggattgtaggtggtactgcaaaaatctac	Protospacer
   * . .** ******************.**

164. spacer 2.29|1128340|33|NZ_CP039261|CRISPRCasFinder,PILER-CR matches to MN693808 (Marine virus AFVG_250M831, complete genome) position: , mismatch: 10, identity: 0.697

acattatctgaaggtggtactgcaaaaatttaa	CRISPR spacer
tactggattgtaggtggtactgcaaaaatctac	Protospacer
   * . .** ******************.**

165. spacer 2.43|1129196|33|NZ_CP039261|CRISPRCasFinder matches to NZ_CP021437 (Bacillus thuringiensis strain C15 plasmid pBMB240, complete sequence) position: , mismatch: 10, identity: 0.697

cttttgccttcttttttaacagcgttaatttta	CRISPR spacer
aaaatcgcttcttttttttcagcgttaatttct	Protospacer
    *  **********  ************.

166. spacer 2.43|1129196|33|NZ_CP039261|CRISPRCasFinder matches to NZ_CP015254 (Bacillus thuringiensis Bt18247 plasmid p81952, complete sequence) position: , mismatch: 10, identity: 0.697

cttttgccttcttttttaacagcgttaatttta	CRISPR spacer
aaaatcgcttcttttttttcagcgttaatttct	Protospacer
    *  **********  ************.

167. spacer 2.43|1129196|33|NZ_CP039261|CRISPRCasFinder matches to NZ_CP024657 (Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence) position: , mismatch: 10, identity: 0.697

cttttgccttcttttttaacagcgttaatttta	CRISPR spacer
aaaatcgcttcttttttttcagcgttaatttct	Protospacer
    *  **********  ************.

168. spacer 2.43|1129196|33|NZ_CP039261|CRISPRCasFinder matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 10, identity: 0.697

cttttgccttcttttttaacagcgttaatttta	CRISPR spacer
aaaatcgcttcttttttttcagcgttaatttct	Protospacer
    *  **********  ************.

169. spacer 2.43|1129196|33|NZ_CP039261|CRISPRCasFinder matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 10, identity: 0.697

cttttgccttcttttttaacagcgttaatttta	CRISPR spacer
tgcgtgtcttcgtttttaacagcgttaacaaaa	Protospacer
. . **.**** ****************.   *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

22353 : 52494

Streptococcus_phage(54.55%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052543001.1\|22353_22977_+\|transposase	IS607 family transposase	A0A1V0SJI5	Klosneuvirus	7.7e-33	41.1
WP_158172787.1\|23191_24289_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	G3MB42	Bacillus_virus	9.3e-58	41.0
WP_158171999.1\|24556_24736_+	hypothetical protein	NA	NA	NA	NA
WP_087176735.1\|24914_25964_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	4.6e-46	34.6
WP_158172788.1\|27825_30771_+	LEA family epithelial adhesin	NA	NA	NA	NA
WP_012845416.1\|31157_31304_+\|transposase	transposase	NA	NA	NA	NA
WP_158172000.1\|31281_31488_+	hypothetical protein	NA	NA	NA	NA
WP_158172001.1\|31726_31879_+	hypothetical protein	NA	NA	NA	NA
WP_065991183.1\|33029_33653_+\|transposase	IS607 family transposase	A0A1V0SJI5	Klosneuvirus	5.9e-33	41.1
WP_087176943.1\|33867_34965_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	G3MB42	Bacillus_virus	3.5e-57	40.7
WP_012845422.1\|35650_36298_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_158172002.1\|37521_39441_+	tetracycline resistance ribosomal protection protein Tet(W)	E4ZFJ7	Streptococcus_phage	0.0e+00	99.5
WP_082224993.1\|39522_40071_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_158172003.1\|40120_40810_-	DUF975 family protein	NA	NA	NA	NA
WP_004896312.1\|40941_41649_+	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA
WP_158172004.1\|41681_42521_-	DegV family EDD domain-containing protein	A0A1X9I5J4	Streptococcus_phage	4.3e-47	36.6
WP_004896308.1\|42640_42826_-	hypothetical protein	NA	NA	NA	NA
WP_158172005.1\|43035_44955_+	GTP-binding protein	A0A1S5SF82	Streptococcus_phage	4.3e-66	30.5
WP_158172006.1\|45393_46596_+\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	1.5e-40	30.5
WP_158172007.1\|47592_47892_+	hypothetical protein	NA	NA	NA	NA
WP_158172008.1\|48254_48686_+	CopY/TcrY family copper transport repressor	NA	NA	NA	NA
WP_004898344.1\|48819_50973_+	copper-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.7e-61	30.4
WP_004898347.1\|51025_51190_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_158172009.1\|51213_52494_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	2.2e-42	33.8

DBSCAN-SWA_2

492629 : 560044

Staphylococcus_phage(15.79%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011161609.1\|492629_495278_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	8.0e-63	33.4
WP_003647717.1\|495332_495590_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA
WP_004895672.1\|495589_496021_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_004895671.1\|496022_496337_+	DUF1292 domain-containing protein	NA	NA	NA	NA
WP_087285107.1\|496394_496937_+	CvpA family protein	NA	NA	NA	NA
WP_158172177.1\|496979_499346_+	endonuclease MutS2	Q94M10	Lactobacillus_phage	2.7e-22	52.6
WP_004895668.1\|499424_499736_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	4.2e-16	41.7
WP_004896796.1\|499818_500214_-	YslB family protein	NA	NA	NA	NA
WP_158172178.1\|500310_501111_+	glutamate racemase	NA	NA	NA	NA
WP_095183439.1\|501113_501737_+	XTP/dITP diphosphatase	C7C6C2	Cassava_brown_streak_virus	2.1e-14	34.7
WP_095076955.1\|501896_503075_+	acetate kinase	NA	NA	NA	NA
WP_095076956.1\|503120_504017_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_004895662.1\|504139_504571_+	DUF948 domain-containing protein	NA	NA	NA	NA
WP_004895661.1\|504593_504926_+	hypothetical protein	NA	NA	NA	NA
WP_087285101.1\|505018_506125_-	aminopeptidase P family protein	NA	NA	NA	NA
WP_087713225.1\|506268_507264_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	4.7e-16	24.6
WP_158172179.1\|507336_510174_-	penicillin-binding protein	NA	NA	NA	NA
WP_158172180.1\|510272_511670_-	dipeptidase PepV	NA	NA	NA	NA
WP_095182766.1\|511689_513072_-	glycerophosphodiester phosphodiesterase	A0A076G4Q2	Staphylococcus_phage	4.5e-17	29.2
WP_004895655.1\|513171_513498_+	hypothetical protein	NA	NA	NA	NA
WP_158172181.1\|513510_514890_+	bifunctional metallophosphatase/5'-nucleotidase	S4VPC4	Pandoravirus	6.1e-06	22.5
WP_087285095.1\|514889_515429_+	YutD family protein	NA	NA	NA	NA
WP_087713220.1\|515431_516214_+	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA
WP_158172798.1\|516210_516819_+	TIGR01906 family membrane protein	NA	NA	NA	NA
WP_004895650.1\|516826_517477_-	membrane protein	NA	NA	NA	NA
WP_158172182.1\|517503_518460_-	FAD-dependent oxidoreductase	A0A2K9L162	Tupanvirus	3.8e-15	30.1
WP_087713218.1\|518559_518931_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA
WP_087285419.1\|524952_526161_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	9.4e-136	66.2
WP_158172183.1\|526150_527608_+	MFS transporter	NA	NA	NA	NA
WP_117285382.1\|527691_529093_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.9e-40	39.6
WP_158172799.1\|529147_529855_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_012845756.1\|530096_532511_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	67.2
WP_087284936.1\|532612_534271_+	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_095183588.1\|535492_536239_+	hypothetical protein	NA	NA	NA	NA
WP_158172184.1\|536281_537127_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_087713201.1\|537179_538106_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	3.9e-17	28.9
WP_012845762.1\|538385_540062_+\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	5.6e-70	31.4
WP_004895615.1\|540173_541091_+	class II fructose-bisphosphate aldolase family protein	NA	NA	NA	NA
WP_158172185.1\|541157_541469_+	hypothetical protein	NA	NA	NA	NA
WP_080545348.1\|542623_542875_+	hypothetical protein	NA	NA	NA	NA
WP_012845770.1\|542894_543110_+	hypothetical protein	NA	NA	NA	NA
WP_087284945.1\|543539_544076_+	hypoxanthine phosphoribosyltransferase	A0A2K9L634	Tupanvirus	8.7e-09	26.8
WP_012845772.1\|544088_544760_+	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_012845774.1\|545684_547019_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A286QQE5	Streptococcus_phage	1.7e-61	37.1
WP_087284950.1\|547118_547583_+\|transposase	IS200/IS605-like element ISLjo5 family transposase	A0A0P0IQC6	Lactobacillus_phage	1.3e-29	43.1
WP_012845776.1\|547625_548084_-	GAF domain-containing protein	NA	NA	NA	NA
WP_158172186.1\|549451_550447_+	hypothetical protein	NA	NA	NA	NA
WP_087284952.1\|550514_551081_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_087713194.1\|551080_552019_+	AEC family transporter	NA	NA	NA	NA
WP_158172187.1\|552034_552838_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_004895578.1\|552860_553613_-	aquaporin family protein	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	1.3e-29	31.8
WP_158172188.1\|553816_555295_+	MFS transporter	NA	NA	NA	NA
WP_158172189.1\|555401_556853_+	MFS transporter	NA	NA	NA	NA
WP_087284957.1\|557116_558343_+\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	2.4e-94	47.9
WP_065991183.1\|559420_560044_+\|transposase	IS607 family transposase	A0A1V0SJI5	Klosneuvirus	5.9e-33	41.1

DBSCAN-SWA_3

735820 : 743053

Pacmanvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158172241.1\|735820_736240_+	NUDIX domain-containing protein	A0A1X6WFB1	Pacmanvirus	1.3e-07	31.2
WP_069169036.1\|736223_736862_+	uracil-DNA glycosylase	A0A218MKQ4	uncultured_virus	1.4e-08	38.7
WP_011162245.1\|736898_737522_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	3.2e-15	56.3
WP_087284686.1\|737659_737908_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_003649044.1\|737980_738202_+	YneF family protein	NA	NA	NA	NA
WP_158172242.1\|738278_740045_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	8.5e-53	30.1
WP_012845952.1\|740034_741828_+	ABC transporter ATP-binding protein	A0A1V0SJ29	Klosneuvirus	1.3e-11	24.0
WP_158172243.1\|741871_743053_-	methyltransferase domain-containing protein	A0A2I2L5L3	Orpheovirus	3.0e-46	34.9

DBSCAN-SWA_4

926289 : 1010459

Staphylococcus_phage(21.05%)

protease,transposase,integrase

attL 976324:976347|attR 978580:978603

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_117285382.1\|926289_927691_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.9e-40	39.6
WP_158172317.1\|927773_930161_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_087712995.1\|930171_930783_-	Holliday junction resolvase RecU	NA	NA	NA	NA
WP_012846148.1\|930850_931414_+	DUF1273 domain-containing protein	NA	NA	NA	NA
WP_012846149.1\|931618_932056_+	DivIVA domain-containing protein	NA	NA	NA	NA
WP_158172318.1\|932521_933646_+	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_158172319.1\|933651_934884_+	metallophosphoesterase	NA	NA	NA	NA
WP_158172320.1\|934971_936072_-	acyltransferase family protein	NA	NA	NA	NA
WP_087712991.1\|936158_937082_-	DegV family protein	NA	NA	NA	NA
WP_012846154.1\|937214_937565_+	hypothetical protein	NA	NA	NA	NA
WP_158172321.1\|937561_939235_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_004894860.1\|939234_939699_+	signal peptidase II	NA	NA	NA	NA
WP_095076490.1\|939713_940628_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	1.3e-09	29.7
WP_012846158.1\|940631_941687_+	carbamoyl phosphate synthase small subunit	NA	NA	NA	NA
WP_087712987.1\|941690_944855_+	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA
WP_158172322.1\|944927_946619_-	DUF814 domain-containing protein	Q84500	Paramecium_bursaria_Chlorella_virus	1.5e-09	40.2
WP_012846161.1\|946807_947218_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004897328.1\|947333_948221_+	DegV family protein	A0A0N9SI50	Staphylococcus_phage	1.2e-10	42.2
WP_158172323.1\|948305_949418_+	hypothetical protein	NA	NA	NA	NA
WP_012846166.1\|950434_951505_-	tyrosine recombinase XerS	Q8W5Y3	Listeria_phage	4.0e-05	23.2
WP_004897332.1\|952811_953507_-	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_004894833.1\|953573_954161_-	peptidylprolyl isomerase	A0A2H4UTF4	Bodo_saltans_virus	7.7e-27	42.6
WP_069168440.1\|954506_955730_-\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	4.5e-93	47.7
WP_004894829.1\|957747_958683_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
WP_095183648.1\|959994_962475_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	5.7e-95	32.4
WP_004897336.1\|962491_964450_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	1.9e-117	40.3
WP_158172324.1\|964549_965206_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_012846174.1\|965310_965925_-	sugar O-acetyltransferase	NA	NA	NA	NA
WP_012846180.1\|967869_968100_-	hypothetical protein	NA	NA	NA	NA
WP_158172325.1\|968298_969561_-	AAA family ATPase	A0A127AWE7	Bacillus_phage	2.0e-64	36.3
WP_158172326.1\|969635_970292_-	hypothetical protein	NA	NA	NA	NA
WP_158172327.1\|970293_970785_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_158172328.1\|972727_975751_-	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	9.2e-15	22.4
WP_158172329.1\|975857_976955_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	7.0e-29	30.3
976324:976347	attL	NA	NA	NA	NA
WP_158172330.1\|976992_977928_-\|integrase	tyrosine-type recombinase/integrase	A8ATM2	Listeria_phage	6.7e-81	49.0
WP_158172331.1\|977998_979162_-	hypothetical protein	A0A2H4PQP5	Staphylococcus_phage	2.1e-23	26.7
978580:978603	attR	NA	NA	NA	NA
WP_095182483.1\|979154_980810_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.4e-113	46.4
WP_095076931.1\|980945_981788_-	hypothetical protein	NA	NA	NA	NA
WP_012846197.1\|981788_983885_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_158172803.1\|986633_986720_-	hypothetical protein	NA	NA	NA	NA
WP_158172332.1\|986739_987048_-	hypothetical protein	NA	NA	NA	NA
WP_095076927.1\|988025_988520_+	thiol peroxidase	NA	NA	NA	NA
WP_012846203.1\|988653_988986_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_158172333.1\|989053_989506_-	hypothetical protein	NA	NA	NA	NA
WP_158172334.1\|989723_990806_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_158172335.1\|991025_993548_-	AAA family ATPase	A0A1B1IVR3	uncultured_Mediterranean_phage	4.7e-137	31.3
WP_158172336.1\|993782_994883_+	AAA family ATPase	NA	NA	NA	NA
WP_158172337.1\|996296_996866_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_158172804.1\|996974_997715_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_004897363.1\|999293_999617_-	metal-sulfur cluster assembly factor	NA	NA	NA	NA
WP_011161981.1\|999616_1001020_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_004897365.1\|1001012_1001471_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA
WP_158172338.1\|1001457_1002696_-	SufS family cysteine desulfurase	Q2XUY6	environmental_halophage	1.0e-105	44.5
WP_158172339.1\|1002676_1003882_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_158172340.1\|1003890_1004685_-	Fe-S cluster assembly ATPase SufC	A0A285PWH2	Cedratvirus	4.4e-09	26.5
WP_069168479.1\|1005140_1006199_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_012845668.1\|1008179_1009382_-\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	1.5e-40	30.5
WP_158172341.1\|1009816_1010164_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_005725993.1\|1010228_1010459_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1039843 : 1050204

Erwinia_phage(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004894575.1\|1039843_1041238_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A1B2IB03	Erwinia_phage	1.6e-30	26.3
WP_004894572.1\|1041248_1041773_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_158172346.1\|1041777_1042701_-	tyrosine recombinase XerC	S5W9T9	Leptospira_phage	2.4e-22	28.9
WP_158172347.1\|1042703_1044020_-\|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	NA	NA	NA	NA
WP_158172348.1\|1044117_1046199_-	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	3.2e-99	36.7
WP_158172349.1\|1046264_1047110_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	3.7e-30	38.2
WP_158172350.1\|1047162_1047915_-	ribonuclease HII	D2TEQ2	Emiliania_huxleyi_virus	2.1e-24	37.2
WP_158172351.1\|1047911_1048751_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_158172352.1\|1048752_1050204_-	PDZ domain-containing protein	A0A0R6PIZ1	Moraxella_phage	1.6e-09	27.4

DBSCAN-SWA_6

1100088 : 1132850

Lactobacillus_phage(28.57%)

protease,transposase,integrase

attL 1099646:1099661|attR 1122038:1122053

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1099646:1099661	attL	NA	NA	NA	NA
WP_158172367.1\|1100088_1100886_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_158172807.1\|1100914_1101547_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_158172368.1\|1102518_1103340_-	cell wall protein	NA	NA	NA	NA
WP_004894431.1\|1103562_1103943_-	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_158172369.1\|1104032_1104434_-	hypothetical protein	NA	NA	NA	NA
WP_158172370.1\|1104722_1105772_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	2.3e-45	34.3
WP_158172371.1\|1105838_1106498_+	hypothetical protein	NA	NA	NA	NA
WP_158172372.1\|1106527_1106968_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_158172373.1\|1107119_1107965_+	hypothetical protein	NA	NA	NA	NA
WP_158172374.1\|1108029_1108800_-	hypothetical protein	NA	NA	NA	NA
WP_143445803.1\|1109519_1109633_+	type I toxin-antitoxin system Fst family toxin	Q65YV5	Lactobacillus_phage	3.4e-08	84.8
WP_158172375.1\|1110212_1110617_-	hypothetical protein	Q20DD0	Lactobacillus_phage	9.6e-61	83.6
WP_158172376.1\|1110613_1111048_-	HK97 gp10 family phage protein	A9D9U1	Lactobacillus_prophage	5.6e-75	94.4
WP_158172377.1\|1111044_1111407_-	hypothetical protein	A9D9T8	Lactobacillus_prophage	1.0e-61	95.0
WP_158172378.1\|1111403_1111796_-	hypothetical protein	A9D9T5	Lactobacillus_prophage	2.0e-63	92.3
WP_158172808.1\|1111804_1111984_-	hypothetical protein	X2CY65	Lactobacillus_phage	1.1e-16	79.7
WP_069168440.1\|1112367_1113591_+\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	4.5e-93	47.7
WP_158172379.1\|1113933_1114281_-	hypothetical protein	Q9AYW8	Lactococcus_phage	3.8e-13	41.1
WP_158172380.1\|1114371_1114563_-	hypothetical protein	NA	NA	NA	NA
WP_012846301.1\|1116328_1117429_+\|integrase	site-specific integrase	X2CYE9	Lactobacillus_phage	2.2e-147	68.7
WP_158172381.1\|1117914_1118793_-	type I-E CRISPR-associated endoribonuclease Cas2	A0A0A8WJ41	Clostridium_phage	8.3e-09	28.3
WP_087712926.1\|1118798_1119737_-	type I-E CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_087712925.1\|1119739_1120387_-	type I-E CRISPR-associated protein Cas6/Cse3/CasE	NA	NA	NA	NA
WP_087712924.1\|1120398_1121109_-	type I-E CRISPR-associated protein Cas5/CasD	NA	NA	NA	NA
WP_087712923.1\|1121089_1122211_-	type I-E CRISPR-associated protein Cas7/Cse4/CasC	NA	NA	NA	NA
1122038:1122053	attR	NA	NA	NA	NA
WP_157662328.1\|1122213_1122801_-	type I-E CRISPR-associated protein Cse2/CasB	NA	NA	NA	NA
WP_158172382.1\|1122829_1124515_-	type I-E CRISPR-associated protein Cse1/CasA	NA	NA	NA	NA
WP_087712920.1\|1124507_1127258_-	CRISPR-associated helicase/endonuclease Cas3	A0A2R2ZGW0	Clostridioides_phage	1.2e-05	22.3
WP_158172383.1\|1129466_1130384_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_087285405.1\|1130597_1131023_-	restriction endonuclease	G3M9Z4	Bacillus_virus	9.3e-06	33.0
WP_023599651.1\|1131800_1132850_+\|transposase	IS30-like element ISLjo1 family transposase	H7BWC8	unidentified_phage	7.1e-47	35.1

DBSCAN-SWA_7

1144784 : 1151785

Enterobacteria_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087176735.1\|1144784_1145834_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	4.6e-46	34.6
WP_158172388.1\|1145821_1147381_-	AAA family ATPase	NA	NA	NA	NA
WP_158172389.1\|1147693_1148680_-	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	1.7e-26	37.2
WP_004897504.1\|1148696_1149305_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.7e-45	51.9
WP_158172390.1\|1149335_1150220_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.2e-94	58.9
WP_158172391.1\|1150226_1151264_-	dTDP-glucose 4,6-dehydratase	A0A291LAD7	Escherichia_phage	1.0e-85	46.5
WP_158172392.1\|1151383_1151785_-	hypothetical protein	A0A2D1GPE1	Lactobacillus_phage	8.8e-06	29.7

DBSCAN-SWA_8

1834967 : 1886584

Moraxella_phage(17.65%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_129206530.1\|1834967_1835510_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_007124969.1\|1835467_1835635_-\|transposase	transposase	NA	NA	NA	NA
WP_158172764.1\|1835774_1836464_+\|transposase	IS607 family transposase	I7JC24	Campylobacter_virus	3.8e-17	30.0
WP_087176943.1\|1836678_1837776_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	G3MB42	Bacillus_virus	3.5e-57	40.7
WP_087284543.1\|1838915_1839563_-	pyroglutamyl-peptidase I	NA	NA	NA	NA
WP_158172765.1\|1839581_1840505_-	DUF979 family protein	NA	NA	NA	NA
WP_087712572.1\|1840507_1841182_-	DUF969 domain-containing protein	NA	NA	NA	NA
WP_158172826.1\|1841806_1842229_-	hypothetical protein	NA	NA	NA	NA
WP_095182594.1\|1842955_1844410_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA
WP_012846787.1\|1844458_1844968_+	DUF1440 domain-containing protein	NA	NA	NA	NA
WP_158172766.1\|1844984_1845632_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_158172767.1\|1845711_1846833_+	hypothetical protein	NA	NA	NA	NA
WP_087284559.1\|1846846_1849186_+	ABC transporter ATP-binding protein/permease	G9BWD6	Planktothrix_phage	1.3e-32	36.8
WP_012846791.1\|1849349_1850741_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_087712566.1\|1850740_1851763_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_158172768.1\|1851781_1853599_+	thiol reductant ABC exporter subunit CydD	W8CYL7	Bacillus_phage	3.8e-16	22.0
WP_158172769.1\|1853595_1855341_+	thiol reductant ABC exporter subunit CydC	A0A1V0SE00	Indivirus	1.8e-23	33.0
WP_158172770.1\|1855360_1856287_+	prenyltransferase	NA	NA	NA	NA
WP_087284571.1\|1856352_1857645_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_158172771.1\|1857934_1858867_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_158172772.1\|1858961_1860032_+	BMP family ABC transporter substrate-binding protein	A0A0A7DN02	Lactobacillus_phage	3.3e-60	38.7
WP_041822357.1\|1860096_1861125_-	serine hydrolase	A0A1J0GRK9	Mycobacterium_phage	2.9e-05	22.3
WP_158172773.1\|1862278_1863184_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_158172774.1\|1864083_1864923_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	9.1e-21	26.9
WP_087712555.1\|1865049_1865769_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_041822360.1\|1865989_1866640_+	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	3.7e-54	48.0
WP_158172775.1\|1866661_1867336_+	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	2.4e-56	52.2
WP_158172776.1\|1867393_1868632_-	lactate oxidase	NA	NA	NA	NA
WP_003650577.1\|1868871_1870182_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	5.0e-42	29.4
WP_158172777.1\|1870268_1871003_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_095182583.1\|1871306_1872617_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	2.3e-42	31.4
WP_144772624.1\|1872627_1872927_+	phosphoribosyl-ATP pyrophosphohydrolase	NA	NA	NA	NA
WP_158172827.1\|1873192_1874506_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	2.6e-46	29.8
WP_158172778.1\|1874613_1875099_+	helix-turn-helix domain-containing protein	A0A090D830	Clostridium_phage	5.1e-08	39.8
WP_087712551.1\|1875163_1875577_+	peptide deformylase	A0A2I7S809	Vibrio_phage	7.1e-11	36.1
WP_004898229.1\|1875660_1876206_-	hypothetical protein	NA	NA	NA	NA
WP_158172779.1\|1876227_1876785_-	beta-carotene 15,15'-monooxygenase	NA	NA	NA	NA
WP_158172780.1\|1876942_1877377_+	CopY/TcrY family copper transport repressor	NA	NA	NA	NA
WP_012846822.1\|1877389_1877767_+	cupredoxin domain-containing protein	NA	NA	NA	NA
WP_012846823.1\|1877785_1878073_+	cupredoxin domain-containing protein	NA	NA	NA	NA
WP_158172781.1\|1878072_1879998_+	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	3.4e-95	37.2
WP_012846825.1\|1880056_1881517_-	APC family permease	NA	NA	NA	NA
WP_095076576.1\|1881759_1883859_+	putative ornithine decarboxylase	NA	NA	NA	NA
WP_087284620.1\|1883862_1885131_+	aluminum resistance protein	NA	NA	NA	NA
WP_069168440.1\|1885360_1886584_-\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	4.5e-93	47.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP039261

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection