CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP046912	Paraburkholderia sp. 7Q-K02 chromosome 4, complete sequence	0 crisprs	csa3	0
NZ_CP046911	Paraburkholderia sp. 7Q-K02 chromosome 3, complete sequence	0 crisprs	WYL,csa3	0
NZ_CP046910	Paraburkholderia sp. 7Q-K02 chromosome 2, complete sequence	0 crisprs	csa3,cas3	3
NZ_CP046909	Paraburkholderia sp. 7Q-K02 chromosome 1, complete sequence	0 crisprs	cas3,csa3,DinG,DEDDh	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

604650 : 609056

Burkholderia_virus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158759651.1\|604650_605001_-	hypothetical protein	S4TTI6	Salmonella_phage	1.6e-24	56.2
WP_158759652.1\|604997_605468_-	hypothetical protein	R9TRR2	Rhizobium_phage	3.6e-19	41.4
WP_158759653.1\|605466_605973_+	hypothetical protein	NA	NA	NA	NA
WP_158759654.1\|605965_606970_-	DUF5131 family protein	Q8W6R4	Burkholderia_virus	1.3e-109	58.2
WP_158759655.1\|606966_607317_-	DUF4031 domain-containing protein	A0A291LA06	Bordetella_phage	3.9e-42	76.9
WP_158759656.1\|607313_607853_-	hypothetical protein	Q6J1P0	Burkholderia_virus	2.6e-21	59.8
WP_158759657.1\|607842_608832_-	hypothetical protein	NA	NA	NA	NA
WP_158759658.1\|608858_609056_-	hypothetical protein	L7TKR9	Pseudomonas_virus	8.3e-10	58.6

DBSCAN-SWA_2

628613 : 638853

Enterobacteria_phage(20.0%)

portal,capsid,tail,terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158759698.1\|628613_630725_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	2.0e-80	31.8
WP_158759699.1\|630729_630999_+\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
WP_158760969.1\|631000_632653_+\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	1.3e-74	33.3
WP_158759700.1\|632649_633534_+	S49 family peptidase	G8DCP1	Silicibacter_phage	3.9e-54	50.6
WP_158759701.1\|634312_634987_+\|head	head decoration protein	NA	NA	NA	NA
WP_158759702.1\|635053_636085_+\|capsid	major capsid protein	A0A0A8ILA9	Aurantimonas_phage	1.0e-58	36.8
WP_158759703.1\|636087_636420_+	hypothetical protein	NA	NA	NA	NA
WP_158759704.1\|636416_636974_+	ATP-binding protein	NA	NA	NA	NA
WP_158759705.1\|637001_637262_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_158759706.1\|637341_638853_+\|tail	phage tail protein	A0A192Y7L1	Salmonella_phage	7.2e-93	41.5

DBSCAN-SWA_3

946562 : 990010

Bacillus_virus(20.0%)

transposase,plate,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158759948.1\|946562_947732_+\|holin	betaine/proline/choline family ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.4e-27	35.4
WP_158759949.1\|947724_948621_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_158760988.1\|948755_949658_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158759950.1\|950259_951378_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158759951.1\|951406_951610_-	hypothetical protein	NA	NA	NA	NA
WP_158759952.1\|951623_951887_+	hypothetical protein	NA	NA	NA	NA
WP_158759953.1\|951904_952786_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_158757145.1\|953351_954562_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	4.1e-99	64.1
WP_158759954.1\|955105_956035_-	hypothetical protein	NA	NA	NA	NA
WP_158759955.1\|956536_957136_-	LysE family transporter	NA	NA	NA	NA
WP_158759956.1\|957550_958264_+	hypothetical protein	NA	NA	NA	NA
WP_158759957.1\|958247_959042_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_158759958.1\|959016_959316_+	acyl carrier protein	NA	NA	NA	NA
WP_158759959.1\|959319_959571_+	acyl carrier protein	NA	NA	NA	NA
WP_158759960.1\|960205_961966_+	AMP-binding protein	NA	NA	NA	NA
WP_158759961.1\|961962_963672_+	glycosyltransferase	NA	NA	NA	NA
WP_158759962.1\|963658_965233_+	aromatic amino acid lyase	A0A1V0S940	Catovirus	2.8e-47	31.6
WP_158759963.1\|965229_965670_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_158759964.1\|965657_966320_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
WP_158760989.1\|966370_968755_+	MMPL family transporter	NA	NA	NA	NA
WP_158759965.1\|968754_969924_+	beta-ketoacyl-ACP synthase	NA	NA	NA	NA
WP_158759966.1\|969932_970418_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
WP_158759967.1\|970414_971140_+	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
WP_158759968.1\|971139_972369_+	beta-ketoacyl-ACP synthase	NA	NA	NA	NA
WP_158759969.1\|972371_973616_+	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_158759970.1\|973651_974107_+	signal peptidase	NA	NA	NA	NA
WP_158759971.1\|974125_974566_+	excinuclease ABC subunit A	NA	NA	NA	NA
WP_158759972.1\|974593_975331_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_158759973.1\|975514_976786_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_158759974.1\|976867_977287_-	ester cyclase	NA	NA	NA	NA
WP_158759975.1\|977428_977989_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_158759976.1\|977985_978402_-	hypothetical protein	NA	NA	NA	NA
WP_158759977.1\|978564_980136_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_158759978.1\|980416_980911_+	hypothetical protein	NA	NA	NA	NA
WP_158759979.1\|980988_981384_-	DUF4280 domain-containing protein	NA	NA	NA	NA
WP_158759980.1\|981405_981951_-	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
WP_158759981.1\|981958_983947_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	2.9e-41	29.7
WP_158759982.1\|983996_986846_-	type VI secretion system ATPase TssH	A0A248SJW6	Salicola_phage	8.6e-71	29.6
WP_158759983.1\|986656_987781_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_158759984.1\|987744_989532_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_158759985.1\|989515_990010_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP046909

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

553751 : 562992

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158757033.1\|553751_555713_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	1.5e-146	48.0
WP_158757034.1\|555995_557132_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	4.2e-21	29.6
WP_158757035.1\|557187_559095_+	aminodeoxychorismate synthase component I	S4VNU7	Pandoravirus	6.8e-56	36.2
WP_158757036.1\|559178_559994_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	3.5e-33	30.5
WP_158757037.1\|560069_560762_-	deoxynucleoside kinase	S5MMC6	Bacillus_phage	1.7e-09	27.8
WP_158757038.1\|560758_561298_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_158757039.1\|561369_562992_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	1.8e-25	35.5

DBSCAN-SWA_2

2390477 : 2397128

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158758418.1\|2390477_2391596_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2I2L4R9	Orpheovirus	3.1e-48	33.9
WP_158758419.1\|2391631_2392270_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.1e-29	40.3
WP_158758420.1\|2392674_2394510_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.8e-29	26.9
WP_158758421.1\|2394553_2394859_-	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	1.6e-15	52.9
WP_158758422.1\|2394870_2395152_-	excinuclease ABC subunit A	NA	NA	NA	NA
WP_158758423.1\|2395388_2396555_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	6.4e-49	35.5
WP_112171437.1\|2396612_2397128_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.6e-20	39.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046910

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP046909

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection