CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP046915	Paraburkholderia sp. DHF22 chromosome 3, complete sequence	0 crisprs	RT	1
NZ_CP046917	Paraburkholderia sp. DHF22 plasmid p1, complete sequence	0 crisprs	PD-DExK	0
NZ_CP046916	Paraburkholderia sp. DHF22 chromosome 4, complete sequence	1 crisprs	NA	6
NZ_CP046914	Paraburkholderia sp. DHF22 chromosome 2, complete sequence	0 crisprs	csa3,cas3,WYL	0
NZ_CP046913	Paraburkholderia sp. DHF22 chromosome 1, complete sequence	2 crisprs	WYL,cas3,csa3,DinG,DEDDh	3

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

330030 : 392320

Yellowstone_lake_phycodnavirus(20.0%)

plate,holin,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158954641.1\|330030_330606_-\|protease	DJ-1/PfpI/YhbO family deglycase/protease	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	8.1e-13	29.0
WP_158954643.1\|330671_330995_-	c-type cytochrome	NA	NA	NA	NA
WP_158954645.1\|331214_331391_-	hypothetical protein	NA	NA	NA	NA
WP_158954647.1\|331398_332871_-	phosphoesterase	NA	NA	NA	NA
WP_158954649.1\|333106_334087_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_158954651.1\|334264_336007_+	L-lactate permease	NA	NA	NA	NA
WP_158954652.1\|336101_337277_+	CoA transferase	NA	NA	NA	NA
WP_158954654.1\|337273_338209_+	CoA ester lyase	NA	NA	NA	NA
WP_158954656.1\|338264_340202_-	EAL domain-containing protein	G3MA91	Bacillus_virus	1.6e-12	28.8
WP_158956443.1\|340675_341866_+	6-bladed beta-propeller	NA	NA	NA	NA
WP_158954658.1\|341957_342236_+	hypothetical protein	NA	NA	NA	NA
WP_158954660.1\|342321_343722_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_158956445.1\|343718_344210_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_158954662.1\|344457_345561_+	ligase-associated DNA damage response exonuclease	NA	NA	NA	NA
WP_158954664.1\|345557_347237_+	ATP-dependent DNA ligase	NA	NA	NA	NA
WP_158954666.1\|347233_350020_+	ligase-associated DNA damage response DEXH box helicase	NA	NA	NA	NA
WP_158954668.1\|350009_350672_+	ligase-associated DNA damage response endonuclease PdeM	NA	NA	NA	NA
WP_158954670.1\|350811_352680_-	hypothetical protein	NA	NA	NA	NA
WP_158954672.1\|354285_356007_-	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA
WP_158956447.1\|356179_357085_-	hypothetical protein	NA	NA	NA	NA
WP_158954674.1\|357210_358413_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_158954676.1\|358409_362624_-	type VI secretion protein IcmF	NA	NA	NA	NA
WP_158954678.1\|362697_363450_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_158954680.1\|363520_364855_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_158956449.1\|364851_365298_-	hypothetical protein	NA	NA	NA	NA
WP_158954682.1\|365345_366770_-	cation:dicarboxylase symporter family transporter	NA	NA	NA	NA
WP_158954684.1\|366766_367468_-	amino acid racemase	NA	NA	NA	NA
WP_158956451.1\|367476_368751_-	cation:dicarboxylase symporter family transporter	NA	NA	NA	NA
WP_158956453.1\|368811_369561_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_158954686.1\|369871_370144_-	hypothetical protein	NA	NA	NA	NA
WP_158954688.1\|370151_370538_-	DUF4280 domain-containing protein	NA	NA	NA	NA
WP_158956455.1\|370606_371272_-	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
WP_158954690.1\|371386_373315_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.8e-16	24.3
WP_158954692.1\|373319_376052_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	6.1e-82	30.9
WP_158954694.1\|376066_377221_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_158954696.1\|377175_378933_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_158954698.1\|378934_379387_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_158954700.1\|379473_379965_-	Hcp1 family type VI secretion system effector	NA	NA	NA	NA
WP_158954702.1\|380039_381539_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_158954704.1\|381602_382151_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_158954706.1\|382899_383316_-	DUF296 domain-containing protein	NA	NA	NA	NA
WP_158954708.1\|383464_384397_-	hypothetical protein	NA	NA	NA	NA
WP_158954710.1\|384703_385960_+	DUF2252 domain-containing protein	NA	NA	NA	NA
WP_158954712.1\|386027_387179_+	response regulator	NA	NA	NA	NA
WP_158954713.1\|387175_389848_-	response regulator	Q6XM27	Feldmannia_irregularis_virus	1.8e-06	25.9
WP_158954715.1\|390205_392320_-\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP046916

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046916_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046916_1

869564-869806

Orphan

Consensus_repeat	Method
CGCACGCGACGGCACGACGGCGCGGGGCCGCCATGACACGCAAACGCGT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP046916_1

>merge|NZ_CP046916|1|869564-869806|PILER-CR
ACGGCGCGGGGCCGCCATGCTGCGCAAGCGCACCGGGTGGGAGCGCCGAGCATGTTGGCGCCCAGCGCCGCTTTGACCAGCGAGCCGCACGCGACGGCACGACGGCGCGGGGCCGCCATGACACGCAAACGCGTTGGGTGAAGCAGGCGCGCCGAGCATGTTGGCGCCCAGCGCCGCTCAGGCCAGCGAGCCGCACGCGACGGCACGACGGCGCGGGGCCACCATGACACGCAAACGCGTCGG

>NZ_CP046916|1|1|869564-869806|PILER-CR
ACGGCGCGGGGCCGCCATGCTGCGCAAGCGCACCGGGTGGGAGCGCCGAGCA	TGTTGGCGCCCAGCGCCGCTTTGACCAGCGAGCCGCACGCGACGGCACGACGGCGCGGGGCCGCCA
TGACACGCAAACGCGTTGGGTGAAGCAGGCGCGCCGAGCATGTTGGCGCCCA	GCGCCGCTCAGGCCAGCGAGCCGCACGCGACGGCACGACGGCGCGGGGCCACCATGA
CACGCAAACGCGTCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046916.1\|WP_158958687.1\|872526_873234_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225316
NZ_CP046916.1\|WP_158958009.1\|877870_879148_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226669
NZ_CP046916.1\|WP_158957980.1\|860793_861405_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367130
NZ_CP046916.1\|WP_158957992.1\|867533_868475_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP046916.1\|WP_158958689.1\|879159_880014_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP046916.1\|WP_158958008.1\|877078_877807_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|226674
NZ_CP046916.1\|WP_158957994.1\|868679_869543_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180446
NZ_CP046916.1\|WP_158957982.1\|864432_864855_+\|bacteriohemerythrin	unknown	unknown	gnl\|CDD\|179353
NZ_CP046916.1\|WP_158958004.1\|874023_875277_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NZ_CP046916.1\|WP_158958000.1\|872074_872458_+\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|335963
NZ_CP046916.1\|WP_158958002.1\|873389_873653_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046916.1\|WP_158957996.1\|869829_870636_-\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|376667
NZ_CP046916.1\|WP_158957984.1\|864931_866137_+\|5-demethoxyubiquinol-8-5-hydroxylase-UbiM	unknown	unknown	gnl\|CDD\|236385
NZ_CP046916.1\|WP_158957986.1\|866175_866442_-\|DUF2934-domain-containing-protein	unknown	unknown	gnl\|CDD\|378572
NZ_CP046916.1\|WP_158958006.1\|875400_877026_-\|ribulokinase	unknown	unknown	gnl\|CDD\|212663
NZ_CP046916.1\|WP_158957976.1\|857838_859200_-\|NtaA/DmoA-family-FMN-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|274819
NZ_CP046916.1\|WP_158957990.1\|867236_867503_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046916.1\|WP_158957988.1\|866689_867163_+\|PRC-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|368352
NZ_CP046916.1\|WP_158957998.1\|870667_871870_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|184450
NZ_CP046916.1\|WP_158957978.1\|859378_860767_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927

Protein	Function_ID	Function_description	E-value
NZ_CP046916.1\|WP_158958687.1\|872526_873234_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|225316	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].	1.01592e-76
NZ_CP046916.1\|WP_158958009.1\|877870_879148_-\|sugar-ABC-transporter-permease	gnl\|CDD\|226669	COG4214, XylH, ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism].	5.50414e-108
NZ_CP046916.1\|WP_158957980.1\|860793_861405_+\|hypothetical-protein	gnl\|CDD\|367130	pfam02627, CMD, Carboxymuconolactone decarboxylase family. Carboxymuconolactone decarboxylase (CMD) EC:4.1.1.44 is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway. In these bifunctional proteins CMD represents the C-terminal domain, pfam00561 represents the N-terminal domain.	1.30613e-07
NZ_CP046916.1\|WP_158957992.1\|867533_868475_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.60762e-74
NZ_CP046916.1\|WP_158958689.1\|879159_880014_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	5.09666e-103
NZ_CP046916.1\|WP_158958008.1\|877078_877807_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|226674	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only].	3.01362e-83
NZ_CP046916.1\|WP_158957994.1\|868679_869543_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|180446	PRK06180, PRK06180, short chain dehydrogenase; Provisional.	3.48861e-111
NZ_CP046916.1\|WP_158957982.1\|864432_864855_+\|bacteriohemerythrin	gnl\|CDD\|179353	PRK01917, PRK01917, cation-binding hemerythrin HHE family protein; Provisional.	5.26895e-46
NZ_CP046916.1\|WP_158958004.1\|874023_875277_+\|MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.2672e-72
NZ_CP046916.1\|WP_158958000.1\|872074_872458_+\|BON-domain-containing-protein	gnl\|CDD\|335963	pfam04972, BON, BON domain. This domain is found in a family of osmotic shock protection proteins. It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes.	6.36364e-15
NZ_CP046916.1\|WP_158957996.1\|869829_870636_-\|TSUP-family-transporter	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	2.99914e-24
NZ_CP046916.1\|WP_158957984.1\|864931_866137_+\|5-demethoxyubiquinol-8-5-hydroxylase-UbiM	gnl\|CDD\|236385	PRK09126, PRK09126, FAD-dependent hydroxylase.	0
NZ_CP046916.1\|WP_158957998.1\|870667_871870_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	1.39534e-164
NZ_CP046916.1\|WP_158958006.1\|875400_877026_-\|ribulokinase	gnl\|CDD\|212663	cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases. This subgroup is composed of the uncharacterized Yersinia Pseudotuberculosis carbohydrate kinase that has been named glyerol/xylulose kinase and similar uncharacterized proteins from bacteria and eukaryota. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	0
NZ_CP046916.1\|WP_158957976.1\|857838_859200_-\|NtaA/DmoA-family-FMN-dependent-monooxygenase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP046916.1\|WP_158957988.1\|866689_867163_+\|PRC-barrel-domain-containing-protein	gnl\|CDD\|368352	pfam05239, PRC, PRC-barrel domain. The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.	5.41671e-09
NZ_CP046916.1\|WP_158957986.1\|866175_866442_-\|DUF2934-domain-containing-protein	gnl\|CDD\|378572	pfam11154, DUF2934, Protein of unknown function (DUF2934). This bacterial family of proteins has no known function.	3.80428e-10
NZ_CP046916.1\|WP_158957978.1\|859378_860767_+\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.18051e-153

>NZ_CP046916.1|WP_158957994.1|868679_869543_+|SDR-family-NAD(P)-dependent-oxidoreductase
MATIEQGQFKRVWFITGASRGIGALIAEAALADGNAVVAAGRNVEAITQRLGTSAALLPVALDVTREDQAHDAVRAAIARFGRIDVLVNNAGFGLLGAIEESADKDVRRMYDTNVFGLLNVTRAVLPVMRAQRAGHVVNISSIGGYRAAAGFGAYSSTKFAVEGITEALRAELAPLGIHATVVEPGYFRTDFLDASSLVVAPQVIDDYDATSGAVRRRARELNHNQPGDPAKLAAAMIALVDAPAPPLRLPLGTDTLAAISAKNDYVAQEMDAWRALSASTDFASAS
>NZ_CP046916.1|WP_158957992.1|867533_868475_-|LysR-family-transcriptional-regulator
MNEIRAITTFVRAAALGSLRRAAVDQGISPQAASQAVMQLEKSLGVRLFHRTTRKLSLTEEGQRLYESARPALATLTSALDEARRSTEAASGPLRVSAPRALGMPVLWEHFEAFAQRYPDVQLEVQFDDRFTDLVSERADVGFRGGPPPAGGSIARRLVPIQLIVCASPDYLARHGAPRSIDDLARHRCTGYRRANTGKLAQWAFQVRDEIVWRDVPPVIHVNDTEMETQAVLAGLGIGQLGSFSAATPIREGRLVALLAEHVVDYGALYIYYGHRTEQPLRVRTFIDFMIGRLADNRQYFLTADELAAAMRP
>NZ_CP046916.1|WP_158957990.1|867236_867503_+|hypothetical-protein
MFAAVTTLALLIVGYVHTSLSRFTEPGRKRVIAHVTLIAVGLMFGVIGAMLAGQVAPPWVVIACGMGIVHIPALCVLILKRFGRSGQS
>NZ_CP046916.1|WP_158957988.1|866689_867163_+|PRC-barrel-domain-containing-protein
MDPTTPAPPLLPQTDAADVGLVGAVALSGARVIASDGKHAGKLEHVMLDVRRGRIAYAVVSVGGIAGLGSKLLAVPWRAVMLDLTHNHVLLPVPAEKLKDAPGFDKDHWPAMADPDWERGICDYYGSAPYWGAEDGRVGDLPTGSSNLPGPGRGVEP
>NZ_CP046916.1|WP_158957986.1|866175_866442_-|DUF2934-domain-containing-protein
MNDEREERIRRRAYQLWQDDGAPDGKSDEYWSRAEKQVAAEYDAESDSGGVASDQSGKRRVVGDPLQESDSLPPAELSRDERRGGAPK
>NZ_CP046916.1|WP_158957984.1|864931_866137_+|5-demethoxyubiquinol-8-5-hydroxylase-UbiM
MNNDVIIVGGGPVGLCLARALSGHGMRITVIEQQATDALAAPAFDGREIALTQKSVRLLRDLDVWERIDADARSPMRAAKIFNGMSMHALEIGAGNARSGNHAELGWLVANHVIRRAAFESVQASIATHRDITLMAGETVSAVTANAESARVTLASGATLTAALVIAADSRFSPTRRMMGIAADLHDFGKTMLVCRMTHDQPHREAAWEWFGYGQTLALLPMNAHAESGAHQSSVVLTLSAHAMEAVAAMSETAFNAHLEQRFAGRLGAMQLASTRHCYPLVSVYANRFMATRFATVGDAAVGMHPVTAHGFNFGLASIETLCESVTHARRAGGDIGAAAVLRSYELRHQRATRPLFLATRFVTEIYTNGTLPARLAREVMLRAASRLAPFRNAVAASLMG
>NZ_CP046916.1|WP_158957982.1|864432_864855_+|bacteriohemerythrin
MSLSAAIPASHLPAELHLGEPVTDAMHAGFMRLLDQTRDAPDDTLVAALDAWIAHTQEHFAQEERWMDAMDFAGRHCHTGQHRNVLHVAGAVRAEIVENGRFDLGRGLSAELRDWFAHHVRTMDAMMIGHMREMGVAPVA
>NZ_CP046916.1|WP_158957980.1|860793_861405_+|hypothetical-protein
MSGHRTHDDEARLVGALERLHAGPKAFRALSAPVWRAGALSEKDKHLVAIAIAQITRCAFCIEHHAALARKCGATEAEALAVSYLSAALESLGAATLAVTNGALSIDDEAGLRNTRVAKARLEFAQTVFATHVIDNALVWLTAAAVAYAQSNEARRVVLHEQALVAHATTEALDEAYAIAVVLRAGAVYAHTLHVVDAFRERE
>NZ_CP046916.1|WP_158957978.1|859378_860767_+|MFS-transporter
MSTRLSTSASTSSTSASSPQRSPRNGAARVGFAAFIGTTIEWYDFYIYSTASALVFSHAFFPANTSALTGILGSFAAYGVGFFARPLGAVFAGHFGDRIGRKRVLVFSLVLMGIATLLTGLLPTYATAGLLATALLVALRLLQGVATGAEWGGASLLSVEHASARSRGLLGSFTQVGSAAGMLLASGTFLGVRQWLSADDFAAWGWRLPFLFSVVLVAVGVFVRARIHEPAPFLEAQAEGKLRRLPVADVFRHHRRALLVTIGLRLLQPAMYAIVTTYAISYLNLKRGGASFALSAVIVGSAFAIVATPLWAALSDRIGRKRPAVWAVVGISLLVWPFFWFLDHGDLRYLPVVFAIELAIFDAAIYAPGAAWFAEQFPVEVRYSGISLGYQIGTLISGGLTPFVAAALLALGHGSPWYICAYISGLGVVSLIAVLAAADPARRASGTTRPTERRDSAIVRPR
>NZ_CP046916.1|WP_158957976.1|857838_859200_-|NtaA/DmoA-family-FMN-dependent-monooxygenase
MPRQIRFNAFMMNCVAHLAPGQWTAPDDRSVDYLDTSYWVELAKVLEEGLFDGLFLGDVIGLYDEYGGSPATALRTAAQVPMNDPAVLIPLMAHATRHLGFGLTVSVAYEQPYLLARRFTTLDHLSGGRVAWNVVTSYLQSGARSLGQDALRAHDARYDRADEFMSVCYQLWEGSWEAGAVLRDRERGIYADPARVHAVQHEGAHFRVDGVFQCEPSPQRTPLLFQAGGSTRGTQFAARHAECIFLGAPTRNGLRAAAAQARAALRDAGRAPDSARLFAMLTVIVDETAERAQARYEACRARASYEGALALLSGWTGIDLARYRPEDTLQYVDTDAGQSALASFSKLDPDKVWTVRDAVEFVAIGGRGAVIVGDARQVADELQALVEDTGIDGFNLAWVESPRTFHDIVRYLVPELQRRGAYKTRYEPGTLREKLLGGGAQLEAPHVGASYRV
>NZ_CP046916.1|WP_158957996.1|869829_870636_-|TSUP-family-transporter
MIVSLALGAMIGALLGLTGAGGGILAVPALVVGMGWPMQQATPVALIAVAFSAAIGALEAFRRRLVRYRAACCMALAGVPATWIGVQLAQHLSQRVLLALFAAVMAVVAARLLWQTVGHGEPHPEASPLCVARINPDTGRLAWSPRTAVALASTGALTGLMTGLLGVGGGFIIVPMLRKLTNISMHGIVATSLAVIALVGSGGVISTVLHGVPLRLDLTVWFTFATVAGMVLGRQASRRVSARHTQMGFAGILVCVACGLLAKAALGA
>NZ_CP046916.1|WP_158957998.1|870667_871870_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MTTTPAHTPYFDYAATTPADPRVIAAMAACLGIDGDFGNPASSSHDAGQRAKRLVETARKQVAALINADAQDIVWTSGATESNNLALKGYAENAGARGDTRTHLITSVLEHKAVLDTAAWLERHVDRHGMSVTRLAPAANGAITAEAVAAALRPDTGLVSLMLVNNELGTLTDIAAIARVVHAAGALLHVDAAQALGKTPIDVQAQGIDLLSMSAHKVYGPKGIGALYVSRAAFERVAPQMHGGGHERGLRSGTLATHQIVGMGVACELAGAALDDEHARIDALARRLLTGVLALPGVTQNAAHAPRIPNTLSLTIDLPGFFPFLLTGDMAISSTSACNSAAGTPSHVLTAIGLNAEAASRTVRLSLGRFTTAADIDFAIDCIARVVAQCQPRTEATATA
>NZ_CP046916.1|WP_158958000.1|872074_872458_+|BON-domain-containing-protein
MSVFAPIRHGARLALAAALGTFGTLGATRAVAQSRANATPPYSLTNSGPSLGQQSGDALITAKAKAALLAASDLDSGDIHVTTESGVVTLSGVVPRRAQKAQAEQTVKQIDNVVGVRNTLDVDEAPQ
>NZ_CP046916.1|WP_158958687.1|872526_873234_+|methyltransferase-domain-containing-protein
MVDRQIRARGIHDTALLAAFAAVPRHVFVPPALQKHAYADAALPIGRHAGNQARSQAGSQADSQARSQSSIQTISQPYIVARMIDLAQVRATDNVLDVGTGSGYAAAILARLAARVVSIERDAGLAQHARETLARLNVRNVDCRTGDGTLGVPEAAPFDAILCAAGGPGVPRAWREQLAMGGRIVMPVETGRGMQRLVRLTRRDAVTFEEASFERVRFVPLIGAQGWDDAARPDG
>NZ_CP046916.1|WP_158958002.1|873389_873653_-|hypothetical-protein
MSEKRPQPSERHPTTADDYDVFCGEQIDSAGRYFGLLRIRRKYDGRIIYPFEGCSRAGPCATGPEARREALALADALIRADIATPEP
>NZ_CP046916.1|WP_158958004.1|874023_875277_+|MFS-transporter
MNDHDATGGARPNSPRFLLFLICLFASAGQLAIDIYVPALPAMARYFSTSPQAIQSSVSVYLAAYSLGQLVFGPVSDAIGRKRVLAFGLVVYTVGCVLSLCAPNLETFVFARCLQGFGIAATNLLAKAIITDSFTGSALMHAFTYMSITWGLAPIVAPVIGAHLQEWFDWQACLIFLLIYSIVMWALLWRYQETLRQPVQLEVRTLVSNAGKVLASPVFQSCFLAQGLCYSILLVFNVVGPFMVLSTLHKPPTYFGYLALGIGFMYFLGGLSNRLHGPLAPTPEQRLRWGSHAMAGAAVVMLALALVVGLRVWTLAMPVLFMGFCAGAMYPTFMAKGNSLFPHIAGLTSAILGCALLLVSSAMMGLAGFVSVHVLTPLAMFFVLLGFTVVAMTKKLLRHLAQLEAAPAVAACNGEAA
>NZ_CP046916.1|WP_158958006.1|875400_877026_-|ribulokinase
MTTQQQGRAQYAIGVDVGTGSARAGIFDAAGRMAGAAKRDITVFHESGAMVEQSSTEIWRAVCDAVKDALAQAKVAPEDVAGIGFDATCSLVVLGAGGTPLAVGPSENAERDIIVWMDHRALDQADRINATHHPVLRYVGGKISPEMETPKLLWLQENRPATFEAAWQFFDLTDYLTWRASGDLARSTCTVTCKWTYLAHEQRWDESYFRTVGLGVLADEDFARIGQRIVEPGTPLGQGLTPEAAAQLGLRAGTPVATGVIDAHAGGIGTVGAQGDPEASLAYVFGTSSCTMTTTRDPVFVPGVWGPYFSAMVPQAWLNEGGQSVAGAAIDRLVAMHPYAGEAAQRAAQAGQSLPAMLAALAAEAAGTGGLSGAIDLTQGLHVVPEFLGNRAPFADPHARAVIAGLGMETDLASLVALYVAGIASIGYGLRQIIDVQARAGASIEQIVISGGAGRQDLVRQLLADATGKPVLATAAEEPVLLGAAMLGGVAGGLYADVRSAMAAMSQIDKTYAPATGETVATHDARYRAFTQLQDVARAIR
>NZ_CP046916.1|WP_158958008.1|877078_877807_-|SDR-family-NAD(P)-dependent-oxidoreductase
MSESINGKVAAITGAASGIGLACARALIGEGVKVVLIDRAEDRLAQCCQELGPNAFGLAMDLLRPADFATMLPRILDLAGGLDIFHANAGAYIGGEVVNGNPDDWDRMLNLNINAAFRSVRAVLPHMVAQKSGDILFTSSVAGVVPVVWEPVYTASKFAVQAFMHTTRRQVAKHGVRVGAVLPGPVVTALLDDWPKAKMDEALAQGSLMQPQEVAEAVVFMLTRPRNVTIRDLVILPNSVDL
>NZ_CP046916.1|WP_158958009.1|877870_879148_-|sugar-ABC-transporter-permease
MSNHTHPDPERETASSPPTLLDRSDVRVKHASGIGETVSAFVDRVRSGDLGSLPVIAGLVIIWTVFTSLNPVFLSADNLVNMLFDCSTVGVISLGIVCVLLVGQIDLSVGSMSGFASAMVGTLWVNEGWPVLLAIAAAIVVGAAIGALYALLLNWIGMPSFVSTLAGLLAILGMQLYVLGSTGSINLPYGSTIVNFGQLMVMPAPVSHLLALLPGAVVLLLGMRTRARRHAARLSAPSVASLVTRAAAITVFLEIVVAYLNQGRGVPLMFGLFLLLAVVMQYALTRTRWGRSMNAVGGNHEAARRAGIKVGAIYTSAFVLCAGLAALGGVLTAARLASASQQAGTGDVNLNAIAAAVIGGTSLFGGRGSAWSAVLGIIVIQSIASGLTLLNLSSSLRFMITGAVLAIAVIVDSLARQSRVSHGRA
>NZ_CP046916.1|WP_158958689.1|879159_880014_-|ATP-binding-cassette-domain-containing-protein
MTPAPTQARAKSGELVLSLRGVSKHFGAVSALTDIELDVRAGEVVALVGDNGAGKSTLVKILAGVHQPSSGTITFGGKEVSLSDPGAALDLGIATVFQDLALCENLDVVANIFLGRELSPYRLDEVTMEVKAWTLLNELSARIPSVRDVVASLSGGQRQTVAIARSLLLDPKLIMLDEPTAALGVAQTAEVLNLIERVRDRGHAVIMISHNMEDVRAVADRIVVLRLGRNNGVFYPDSSNAELVAAITGATENAVSRRAGRRESQASAQTQAQAPAPSQQQDLQ

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

576305 : 583389

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158957514.1\|576305_577193_-	hypothetical protein	I7B6L0	Escherichia_phage	3.0e-06	38.3
WP_158957516.1\|577195_578086_-	hypothetical protein	A0A0U2RK03	Escherichia_phage	2.5e-37	42.3
WP_158958643.1\|578089_579490_-	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	2.6e-52	46.0
WP_158957518.1\|579522_579870_-	hypothetical protein	A0A0U2I1S2	Escherichia_phage	6.8e-23	49.6
WP_158957520.1\|579881_580526_+	hypothetical protein	NA	NA	NA	NA
WP_158957522.1\|580522_580708_+	hypothetical protein	NA	NA	NA	NA
WP_158957524.1\|580704_581235_-	hypothetical protein	A0A0U2JTX5	Escherichia_phage	4.4e-13	46.2
WP_158957526.1\|582371_582650_-	hypothetical protein	NA	NA	NA	NA
WP_158957528.1\|582651_583389_-	hypothetical protein	A0A0U2JGI7	Escherichia_phage	1.2e-24	37.0

DBSCAN-SWA_2

590891 : 609280

Escherichia_phage(42.86%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158957548.1\|590891_591413_-	hypothetical protein	A0A0U2SAX6	Escherichia_phage	8.7e-06	30.7
WP_158957550.1\|591531_592557_-	DUF2184 domain-containing protein	A0A0U2QQI2	Escherichia_phage	9.0e-63	40.9
WP_158957552.1\|592569_593175_-	hypothetical protein	A0A0U2S600	Escherichia_phage	2.5e-12	32.5
WP_158957554.1\|593175_595077_-	NUDIX domain-containing protein	A0A0U2QW61	Escherichia_phage	9.8e-39	40.9
WP_158957556.1\|595220_595442_-	hypothetical protein	NA	NA	NA	NA
WP_158957558.1\|595446_596283_-	hypothetical protein	A0A0U2I1R8	Escherichia_phage	1.9e-63	48.1
WP_158958647.1\|596279_597659_-	DUF1073 domain-containing protein	NA	NA	NA	NA
WP_158957560.1\|597743_599018_-	hypothetical protein	A0A0U2JTW9	Escherichia_phage	4.7e-85	39.3
WP_158957562.1\|599014_599476_-\|terminase	terminase small subunit protein	F8TUR4	EBPR_podovirus	5.0e-29	49.6
WP_158957564.1\|599632_599854_-	hypothetical protein	NA	NA	NA	NA
WP_158957566.1\|601108_601405_-	hypothetical protein	A0A2R2YAX9	Pseudomonas_phage	9.6e-10	40.9
WP_158957568.1\|601401_602571_-	oxidoreductase	A0A088F6J4	Enterobacteria_phage	2.9e-57	36.2
WP_158957570.1\|602905_603154_-	hypothetical protein	NA	NA	NA	NA
WP_158957572.1\|603266_603662_-	DUF2591 domain-containing protein	F8TVJ2	EBPR_siphovirus	1.7e-06	36.0
WP_158957574.1\|603658_604063_-	hypothetical protein	NA	NA	NA	NA
WP_158957576.1\|604175_604625_-	hypothetical protein	W0B4E9	Acinetobacter_phage	4.9e-13	47.4
WP_158958649.1\|605494_605821_-	hypothetical protein	A0A2I7RQI4	Vibrio_phage	3.2e-14	49.5
WP_158957578.1\|606175_606361_-	hypothetical protein	NA	NA	NA	NA
WP_158957580.1\|606347_606539_-	hypothetical protein	NA	NA	NA	NA
WP_158957582.1\|606535_606721_-	hypothetical protein	NA	NA	NA	NA
WP_158957584.1\|606717_606960_-	hypothetical protein	NA	NA	NA	NA
WP_158957586.1\|607597_608011_-	hypothetical protein	A0A088F6N3	Vibrio_phage	8.2e-07	35.2
WP_158957588.1\|608320_609280_-	AAA family ATPase	A0A0U4B0G9	Pseudomonas_phage	3.8e-55	38.7

DBSCAN-SWA_3

619697 : 626243

Escherichia_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158957625.1\|619697_620159_+	hypothetical protein	A0A1Z1LW18	Escherichia_phage	1.9e-20	41.0
WP_158957627.1\|620722_621082_+	hypothetical protein	NA	NA	NA	NA
WP_158957629.1\|621108_621312_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158957631.1\|621336_621690_+	hypothetical protein	K7PKY8	Enterobacterial_phage	2.0e-09	33.0
WP_158957633.1\|621696_622794_+	restriction alleviation protein, Lar family	NA	NA	NA	NA
WP_158957635.1\|622786_623185_+	hypothetical protein	I6NVL3	Burkholderia_virus	1.1e-13	74.5
WP_158957637.1\|623181_623346_+	hypothetical protein	NA	NA	NA	NA
WP_158957639.1\|623342_623729_+	hypothetical protein	NA	NA	NA	NA
WP_158957641.1\|623778_624075_+	hypothetical protein	NA	NA	NA	NA
WP_158957643.1\|624247_624616_+	hypothetical protein	NA	NA	NA	NA
WP_158957645.1\|624900_625251_+	hypothetical protein	A0A0U4KRZ0	Arthrobacter_phage	2.0e-06	60.0
WP_158957647.1\|625395_625599_+	hypothetical protein	NA	NA	NA	NA
WP_158957649.1\|625595_625991_+	hypothetical protein	J7HXK7	Pseudomonas_phage	8.3e-09	40.6
WP_158957651.1\|626045_626243_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	2.8e-05	34.4

DBSCAN-SWA_4

639933 : 647020

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158957669.1\|639933_640938_-	hypothetical protein	I7B6L0	Escherichia_phage	7.6e-06	38.2
WP_158957516.1\|640822_641713_-	hypothetical protein	A0A0U2RK03	Escherichia_phage	2.5e-37	42.3
WP_158958651.1\|641716_643117_-	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	1.2e-52	46.4
WP_158957518.1\|643149_643497_-	hypothetical protein	A0A0U2I1S2	Escherichia_phage	6.8e-23	49.6
WP_158957520.1\|643508_644153_+	hypothetical protein	NA	NA	NA	NA
WP_158957671.1\|644330_645011_-	hypothetical protein	A0A0U2JTX5	Escherichia_phage	5.6e-21	42.0
WP_158958653.1\|645007_645781_-	hypothetical protein	A0A0U2QL72	Escherichia_phage	3.9e-26	31.1
WP_158957526.1\|646002_646281_-	hypothetical protein	NA	NA	NA	NA
WP_158957528.1\|646282_647020_-	hypothetical protein	A0A0U2JGI7	Escherichia_phage	1.2e-24	37.0

DBSCAN-SWA_5

656797 : 672900

Escherichia_phage(25.0%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158957684.1\|656797_658699_-	NUDIX domain-containing protein	A0A0U2QW61	Escherichia_phage	9.8e-39	40.9
WP_158957687.1\|658756_659068_-	hypothetical protein	NA	NA	NA	NA
WP_158957689.1\|659072_659909_-	hypothetical protein	A0A0U2I1R8	Escherichia_phage	2.1e-62	47.8
WP_158957560.1\|661368_662643_-	hypothetical protein	A0A0U2JTW9	Escherichia_phage	4.7e-85	39.3
WP_158957562.1\|662639_663101_-\|terminase	terminase small subunit protein	F8TUR4	EBPR_podovirus	5.0e-29	49.6
WP_158957564.1\|663257_663479_-	hypothetical protein	NA	NA	NA	NA
WP_158957566.1\|664734_665031_-	hypothetical protein	A0A2R2YAX9	Pseudomonas_phage	9.6e-10	40.9
WP_158957691.1\|665397_666195_-	hypothetical protein	A0A088F6J4	Enterobacteria_phage	1.7e-32	36.8
WP_158957693.1\|666529_666874_-	hypothetical protein	NA	NA	NA	NA
WP_158957695.1\|666888_667296_-	DUF2591 domain-containing protein	F8TVJ2	EBPR_siphovirus	1.8e-06	36.0
WP_158957697.1\|667279_667684_-	hypothetical protein	NA	NA	NA	NA
WP_158957699.1\|667795_667975_-	hypothetical protein	W0B4E9	Acinetobacter_phage	5.2e-11	69.6
WP_158957701.1\|668055_668244_-	hypothetical protein	NA	NA	NA	NA
WP_158958649.1\|669113_669440_-	hypothetical protein	A0A2I7RQI4	Vibrio_phage	3.2e-14	49.5
WP_158957578.1\|669793_669979_-	hypothetical protein	NA	NA	NA	NA
WP_158957580.1\|669965_670157_-	hypothetical protein	NA	NA	NA	NA
WP_158957582.1\|670153_670339_-	hypothetical protein	NA	NA	NA	NA
WP_158957584.1\|670335_670578_-	hypothetical protein	NA	NA	NA	NA
WP_158957703.1\|670574_671222_-	hypothetical protein	NA	NA	NA	NA
WP_158957586.1\|671218_671632_-	hypothetical protein	A0A088F6N3	Vibrio_phage	8.2e-07	35.2
WP_158957705.1\|671941_672340_-	hypothetical protein	K4NWL6	Pseudomonas_phage	2.5e-21	46.7
WP_158957707.1\|672336_672900_-	AAA family ATPase	A0A2I7RE66	Vibrio_phage	2.0e-24	36.8

DBSCAN-SWA_6

686396 : 691602

Pseudomonas_phage(33.33%)

integrase

attL 689925:689940|attR 698972:698987

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158957725.1\|686396_686957_+	DUF551 domain-containing protein	I6NVL3	Burkholderia_virus	1.6e-13	74.5
WP_158957639.1\|686953_687340_+	hypothetical protein	NA	NA	NA	NA
WP_158957641.1\|687389_687686_+	hypothetical protein	NA	NA	NA	NA
WP_158957643.1\|687858_688227_+	hypothetical protein	NA	NA	NA	NA
WP_158957727.1\|688223_688523_+	hypothetical protein	NA	NA	NA	NA
WP_158957645.1\|688522_688873_+	hypothetical protein	A0A0U4KRZ0	Arthrobacter_phage	2.0e-06	60.0
WP_158957649.1\|689215_689611_+	hypothetical protein	J7HXK7	Pseudomonas_phage	8.3e-09	40.6
WP_158957651.1\|689665_689863_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	2.8e-05	34.4
689925:689940	attL	NA	NA	NA	NA
WP_158957729.1\|689983_690937_+\|integrase	tyrosine-type recombinase/integrase	A0A0U4JIT5	Pseudomonas_phage	1.0e-36	31.8
WP_158958655.1\|691017_691602_+	hypothetical protein	F2Y1V3	Organic_Lake_phycodnavirus	9.8e-06	24.8
698972:698987	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP046913

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046913_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046913_1

400967-401076

Orphan

Consensus_repeat	Method
GTGACGAACATGCAGGGCGACATCAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP046913_1

>merge|NZ_CP046913|1|400967-401076|CRISPRCasFinder
GTGACGAACCTCGCCGGCGACGTGACGAACATGCAGGGCGACATCACCACCATCCAGGGCAATATCTCGACGCTCTCCGGTGATGTGACGAACATGCAGAGCGACATCAC

>NZ_CP046913|1|1|400967-401076|CRISPRCasFinder
GTGACGAACCTCGCCGGCGACGTGAC	GAACATGCAGGGCGAC
ATCACCACCATCCAGGGCAATATCTC	GACGCTCTCCGGTGAT
GTGACGAACATGCAGAGCGACATCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046913.1\|WP_158948175.1\|389348_390128_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235924
NZ_CP046913.1\|WP_158948197.1\|403704_404205_-\|nicotinamide-nucleotide-amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|334938
NZ_CP046913.1\|WP_158948201.1\|404849_405854_-\|thiamine-phosphate-kinase	unknown	unknown	gnl\|CDD\|235583
NZ_CP046913.1\|WP_158948199.1\|404230_404860_-\|phosphatidylglycerophosphatase-A	unknown	unknown	gnl\|CDD\|368021
NZ_CP046913.1\|WP_158951827.1\|409145_409703_+\|barnase-inhibitor	unknown	unknown	gnl\|CDD\|376530
NZ_CP046913.1\|WP_158948207.1\|410583_410997_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|225356
NZ_CP046913.1\|WP_158948181.1\|392952_393987_+\|L-arabinose-ABC-transporter-permease-AraH	unknown	unknown	gnl\|CDD\|183076
NZ_CP046913.1\|WP_158948187.1\|396083_397268_+\|aldose-1-epimerase	unknown	unknown	gnl\|CDD\|185698
NZ_CP046913.1\|WP_158948183.1\|394029_394830_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235500
NZ_CP046913.1\|WP_158948193.1\|402009_402969_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|225439
NZ_CP046913.1\|WP_158948195.1\|403109_403652_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380376
NZ_CP046913.1\|WP_158948203.1\|406041_408336_+\|NADP-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|183799
NZ_CP046913.1\|WP_158948189.1\|397546_398362_+\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234651
NZ_CP046913.1\|WP_158948177.1\|390291_391293_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380482
NZ_CP046913.1\|WP_158948179.1\|391417_392929_+\|L-arabinose-ABC-transporter-ATP-binding-protein-AraG	unknown	unknown	gnl\|CDD\|183077
NZ_CP046913.1\|WP_158948171.1\|387541_388618_+\|2-dehydro-3-deoxygalactonokinase	unknown	unknown	gnl\|CDD\|377446
NZ_CP046913.1\|WP_158948205.1\|409823_410564_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NZ_CP046913.1\|WP_158948185.1\|394826_395759_+\|gluconolaconase	unknown	unknown	gnl\|CDD\|369882
NZ_CP046913.1\|WP_158948173.1\|388665_389352_+\|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase	unknown	unknown	gnl\|CDD\|181670
NZ_CP046913.1\|WP_158951828.1\|408628_409138_+\|ribonuclease	unknown	unknown	gnl\|CDD\|238340

Protein	Function_ID	Function_description	E-value
NZ_CP046913.1\|WP_158948175.1\|389348_390128_+\|SDR-family-oxidoreductase	gnl\|CDD\|235924	PRK07063, PRK07063, SDR family oxidoreductase.	2.55083e-170
NZ_CP046913.1\|WP_158948197.1\|403704_404205_-\|nicotinamide-nucleotide-amidohydrolase-family-protein	gnl\|CDD\|334938	pfam02464, CinA, Competence-damaged protein. CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.	2.29318e-70
NZ_CP046913.1\|WP_158948201.1\|404849_405854_-\|thiamine-phosphate-kinase	gnl\|CDD\|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	5.4796e-133
NZ_CP046913.1\|WP_158948199.1\|404230_404860_-\|phosphatidylglycerophosphatase-A	gnl\|CDD\|368021	pfam04608, PgpA, Phosphatidylglycerophosphatase A. This family represents a family of bacterial phosphatidylglycerophosphatases (EC:3.1.3.27), known as PgpA. It appears that bacteria possess several phosphatidylglycerophosphatases, and thus, PgpA is not essential in Escherichia coli.	7.90565e-48
NZ_CP046913.1\|WP_158951827.1\|409145_409703_+\|barnase-inhibitor	gnl\|CDD\|376530	pfam01337, Barstar, Barstar (barnase inhibitor).	3.65418e-27
NZ_CP046913.1\|WP_158948207.1\|410583_410997_-\|VOC-family-protein	gnl\|CDD\|225356	COG2764, PhnB, Uncharacterized protein conserved in bacteria [Function unknown].	1.61921e-28
NZ_CP046913.1\|WP_158948181.1\|392952_393987_+\|L-arabinose-ABC-transporter-permease-AraH	gnl\|CDD\|183076	PRK11285, araH, L-arabinose transporter permease protein; Provisional.	6.93162e-171
NZ_CP046913.1\|WP_158948187.1\|396083_397268_+\|aldose-1-epimerase	gnl\|CDD\|185698	cd09021, Aldose_epim_Ec_YphB, aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.	6.7256e-94
NZ_CP046913.1\|WP_158948183.1\|394029_394830_+\|SDR-family-oxidoreductase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	3.34188e-56
NZ_CP046913.1\|WP_158948193.1\|402009_402969_+\|OmpA-family-protein	gnl\|CDD\|225439	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane].	4.51701e-30
NZ_CP046913.1\|WP_158948195.1\|403109_403652_-\|hypothetical-protein	gnl\|CDD\|380376	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain. This family includes eukaryotic, bacterial, and archaeal proteins homologous to YML079wp, a Saccharomyces cerevisiae cupin-like protein of unknown function that structurally resembles plant seed storage and ligand-binding proteins (canavalin, glycinin, auxin binding protein) as well as the bacterial RmlC epimerase. YML079wp is non-essential in yeast and localizes to the nucleus and cytoplasm. The presence of a hydrophobic ligand within a well-conserved binding pocket inside the cupin beta-barrel and sequence similarity with bacterial epimerases suggests a possible biochemical function for YML079wp and its homologs. Also included in this family are Shewanella oneidensis So0799, Agrobacterium fabrum Atu3615 and Branchiostoma belcheri Bbduf985. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold and forms a homodimer.	1.17796e-73
NZ_CP046913.1\|WP_158948203.1\|406041_408336_+\|NADP-dependent-malic-enzyme	gnl\|CDD\|183799	PRK12862, PRK12862, malic enzyme; Reviewed.	0
NZ_CP046913.1\|WP_158948189.1\|397546_398362_+\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234651	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed.	2.21978e-151
NZ_CP046913.1\|WP_158948177.1\|390291_391293_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|380482	cd01540, PBP1_arabinose_binding, periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such as LacI and GalR.	7.52831e-142
NZ_CP046913.1\|WP_158948179.1\|391417_392929_+\|L-arabinose-ABC-transporter-ATP-binding-protein-AraG	gnl\|CDD\|183077	PRK11288, araG, L-arabinose ABC transporter ATP-binding protein AraG.	0
NZ_CP046913.1\|WP_158948171.1\|387541_388618_+\|2-dehydro-3-deoxygalactonokinase	gnl\|CDD\|377446	pfam05035, DGOK, 2-keto-3-deoxy-galactonokinase. 2-keto-3-deoxy-galactonokinase EC:2.7.1.58 catalyzes the second step in D-galactonate degradation.	2.46276e-107
NZ_CP046913.1\|WP_158948205.1\|409823_410564_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	3.03629e-93
NZ_CP046913.1\|WP_158948185.1\|394826_395759_+\|gluconolaconase	gnl\|CDD\|369882	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region. This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE.	4.86833e-89
NZ_CP046913.1\|WP_158948173.1\|388665_389352_+\|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase	gnl\|CDD\|181670	PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed.	6.30376e-102
NZ_CP046913.1\|WP_158951828.1\|408628_409138_+\|ribonuclease	gnl\|CDD\|238340	cd00607, RNase_Sa, RNase_Sa. Ribonucleases first isolated from Streptomyces aureofaciens. In general, ribonucleases cleave phosphodiester bonds in RNA and are essential for both non-specific RNA degradation and for numerous forms of RNA processing. RNAse Sa is a guanylate specific endoribonuclease which belongs to the superfamily of microbial ribonucleases. Typical of this sub-family, the enzyme hydrolyses the phosphodiester bonds of RNA at the 3' oxygen end of guanosine residues to yield oligonucleotides with the guanosine-2',3'-cyclophosphate at the 3' end and the hydroxyl group at the 5' end. The terminal guanosine-2,3'-cyclophosphate is hydrolysed by guanyl RNAses to give guanosine-3'-phosphate.	2.10196e-50

>NZ_CP046913.1|WP_158948189.1|397546_398362_+|orotidine-5'-phosphate-decarboxylase
MTSFIQTLGAAWQRTGSLLCVGLDPEPTKFPAALNGRSDAIFEFCREIVDATAPYACSFKPQIAYFAAHRAEDQLEALIAHVHEKHPGLPVILDAKRGDIGSTAEQYAREAFERFQADAVTVNPYMGFDSIEPWLEHKGKGVIVLCRTSNPGGSDLQFLDTAGRPLYQVVADLAANTWNASGELGLVVGATFPKEIETVRGIVGDMPLLIPGIGAQGGDVEATVKAGRTANGTGMLVNSSRAIIYASKGEDYAQAAATAARNTRDTINAFR
>NZ_CP046913.1|WP_158948187.1|396083_397268_+|aldose-1-epimerase
MSVANSAVRRSNPSSTPSLNAASAPAANQAAGGAAPVSPAAAARRARLEAATHPVMPGPSTSAVAIGAAGVSDVACVTLANAYLRLDVAPQLGGGITRFDWRSEGVLEPVFRRCEHVSARMDPNELACYPLLPYSNRIGDGRFHFGGRDIEIPRNRAGEPMPIHGDGWLAPWTVESADRENVRLVLDRSNGEPYAFRAALGYALDGATLAMTLEVENTGRDALPFGLGVHPFLARDTSTELSAPASGLWLSGDDWLPKRHVPAPPAWQFGVAYPLPEQLVNHAFSGWSGRAAVVWERKRLSLSICANTDYYVLYTPPGKDFFCFEPVDHPINAVNLRGGGDANGMTVLAHGERLVRRFSFTVERMDMRAAANPHRAGARGRNGARGGKGARARA
>NZ_CP046913.1|WP_158948185.1|394826_395759_+|gluconolaconase
MSAPRETQGEDVAGLLVPVQCELGEGATWCARSGRLYWTDIEGKRLFRYDAQASGEQPQTWTMPERLACFALCEDPNTLLLGLESRLAFFDLATGEIESIVEVEPGVPTRLNDGRCDRQGRFVFGTKYEGAPMQAIGGFYRLNHDLTLERLPLPAPAISNSIAFSPDGATMYFCDTLTGEIQACDYGADGTIANARCFVKLTDPTGGPDGSTVDAEGGLWNAQWGGARVVRYGADGVETARVNIPTAQPSCVTLGGALLDTLYVTSARAEMSDEALAREPQAGGVFAAHVAHTGLTEPLFAGRRSESRNA
>NZ_CP046913.1|WP_158948183.1|394029_394830_+|SDR-family-oxidoreductase
MSSPANATAHHAHENYARYPSLVDRVVLITGGATGIGASFVEHFAAQGARVAFFDIDASAGQALADELGDSRHKPLFATVDLTDIGALRAAIADVKAALGPIQVLVNNAANDKRHTLASVTPESFDAGVAVNLRHQLFAAQAVAEDMKAARAGSIINLGSISWMLKQAEMPVYTMSKSAVQGLTRGLAKDLGAHGIRVNTLVPGWVMTEKQRRLWLDDEGRANIKRGQCIGEELLPADLARMALFLAADDSRMITAQDVVVDGGWA
>NZ_CP046913.1|WP_158948181.1|392952_393987_+|L-arabinose-ABC-transporter-permease-AraH
MQRENLAADAADAAKSVAHSAAEALIPQKSDKQKWWQQITEYSLIVIFAVMFIVMSLTVDHFFSVENMLGLALSVSQIGMVACTMMFCLASRDFDLSVGSTVAFAGVLCAMVLNATNNTFIAIVAAVAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIVSHGQAVGVSSDTFIAMGTMAFFGVQMPIWVTLICFIVFGVMLNQTVYGRNTLAIGGNPEASRLAGIKVERTRVWIFLIQGAVTALAGVILAARITSGQPNAAEGFELNVISACVLGGVSLLGGRATISGVVIGVLIMGTVENVMNLLNIDAFYQYLVRGAILLAAVLLDQLKNRGSRD
>NZ_CP046913.1|WP_158948179.1|391417_392929_+|L-arabinose-ABC-transporter-ATP-binding-protein-AraG
MSATLRFDNIGKVFPGVRALDGVSFDVNAGEVHGLMGENGAGKSTLLKILGGEYQPDSGRILIDGNETRFADAAASIGAGIAVIHQELQYVPDLTVMENLLLGALPNSLGWVKRREARAFVRERLAAMGVDLDPAAKLRKLSIAQRQMVEICKALLRNARVIALDEPTSSLSHRETEVLFKLVRELRADNRALIYISHRMDEIYELCNACTIFRDGRKIASHEKLEEVKRETLVAEMVGREISDIYNYAPRELGNTRFAVRGIEGAPLAQAASFEVKAGEIVGFFGLVGAGRSELMQLIYGTHKRRAGELELDGKVIRVKSASDAIRHGIVLCPEDRKEQGIVAMATVSENINISCRRHFLRAGMFLDRKKEAETADRFIKLLKIKTPSRRQKIRFLSGGNQQKAILSRWLAEPDLKVVILDEPTRGIDVGAKHEIYNVIYQLAQRGCAIVMVSSELPEVLGVSDRIVVMREGRISGELPRSAASEHAVLDLALPQGAQKRAA
>NZ_CP046913.1|WP_158948177.1|390291_391293_+|substrate-binding-domain-containing-protein
MQRRIFLTLVAAAATAMFAQAPIAQAADPVKIGFLVKQPEEPWFQDEWKFAEMAAKEKGFTLVKIGAPSGEKVMSAIDNLAAQKAQGFIICTPDVKLGPGIVAKAKADNLKMMTVDDRLVDGAGKPIESVPHMGISAYNIGKQVGDGIAAEIKKRGWDMKDVGAIDVTYEQLPTAHDRTSGATDALVAAGFPKANIIMAPQAKTDTENAFNAANIALTKNPQFKHWVAYALNDEGVLGAVRAAEGRGFKADNMIGIGIGGSDSALNEFKKPQPTGFYGTVIISPKRHGEETSDLMYAWITQGKEPPKLTLTTGMLATRDNVESVRQQMGLASK
>NZ_CP046913.1|WP_158948175.1|389348_390128_+|SDR-family-oxidoreductase
MTRLAGKVALVTGAGRGIGAAIARAFAAQGAAVVLAELDLALGETTARAIAAEHAGAQVLAVETDVTQAASVRDAVARAERDFGAVDVLVNNAGINVFADPLTMTDDDWRRCFAVDLDGVWNGCRAVLPGMVERRAGSIVNIASTHSFQIIPGCFPYPVAKHGVIGLTRALGIEYAPKNVRVNAIAPGYIETQLTHDWWNEQPDPQAARDATLALQPMKRIGHPDEVAMTAVFLASDEAPFINASCITIDGGRTALYHD
>NZ_CP046913.1|WP_158948173.1|388665_389352_+|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase
MQPELNLPAPYTPHAGFVTAFAACRMVAIVRGIQPAEAAEHGRALYEAGFRLIEVPLNSPQPLDSIAAIRKVLPADALVGAGTVLSTERVRDVRNAGGELIVMPHADVDVILAAKLQGLACVPGVATPTEAFSALKHGADALKMFPAEQLGPAVTKAWRAVVPAIVPLLPVGGVTPDNMGPQLAAGATGFGLGSALYKPGQDVATTRANAIAFIEGWKRTHDARGAQK
>NZ_CP046913.1|WP_158948171.1|387541_388618_+|2-dehydro-3-deoxygalactonokinase
MMARENDVKGAGAAHDATPDLSQAALIALDWGTTSLRAYLFDAAGKVLATRASTAGIMNLPVPAEEGGFDVAFDEAVGVWLAQAPGLPVLAAGMVGSAQGWVQAPYVETPAGAQALVDGIVRVRAASGAEVAVVPGVLEPGALPNVMRGEETQIFGALTAAGTVSGADSGASGATSNVDDTGDAPPALIGLPGTHAKWVVVEGERIARFYTFMTGEIYAALCAHTILGRTMKHPVDPDTAAFLRGVSVAREQGCVGLLATAFSARTLGLTGQLAADEQPDYLSGLVIGHELAGLEAALARRDVSLAACAPQLIGAEALCERYRLALAQFGCDGARLVRHATEHGLWRIAVQAGLVTPR
>NZ_CP046913.1|WP_158948193.1|402009_402969_+|OmpA-family-protein
MKKILIASALLSALASVQAFASIGSDAEALMPAAQRIANPYQRGLAEGWLDIAARQDSHVLVSSVYNDAAARALNNGRHFIDGSVPFQPIYSQKNWPPVETREKWVNALKELERTNERAAKSPCRNEDAGRLAALTDEVWKEQDETHGTRWVHGWEAVERAQKLAQQVNKKLDQCVPPVAAVPAPVPAPVVVAALPVAKPLSLSADALFDFDSSVLKPEGQNMIQVLAQRLRDNRAKLSVLKIDGYTDRFGSSAHNLKLSRQRAEAVQQALLAQGVAAERFEINGFGAADPVKFCPGKQATPTVVACLAPNRRVQITAR
>NZ_CP046913.1|WP_158948195.1|403109_403652_-|hypothetical-protein
MAHANVAVEELIRRFGLEPHPEGGYYSETYRADKFVQREGASATEGTRAASTAIYFLLADGAYSAWHRIRSDELWHFYAGSPIEIHSIDERGVLSTRKLGHALDHAGTVFQAVVPAGHWFAARCCDPSTYALVGCTVAPGFEFSEFEIADTLALAEQYPLHRSLIELLGRPASVSAAKRD
>NZ_CP046913.1|WP_158948197.1|403704_404205_-|nicotinamide-nucleotide-amidohydrolase-family-protein
MPTDSVVHQLAIRAGNALRDGRLMLATAESCTGGMVATAITDISGSSGWFERGFVTYSNQAKSEMIGVPPDLIERHGAVSEPVARAMAEGALRNSRAQVSLAITGVAGPGGGTPDKPVGMVSFGWSNRLHTSVETVVFKGDRERIRVQAAAHALRGLLALIDEKER
>NZ_CP046913.1|WP_158948199.1|404230_404860_-|phosphatidylglycerophosphatase-A
MQTDPTPSPAEDFGAGNQANASAAGVAPARPNGANGRAAESGNASAPKGPRRADAPFMLTHPLHIISLGFGSGLSRLAPGTAGTLFAWAAFEVLNRYFTVIDWSVLIVVGFFAGIGITGFTAKKLRTEDPSAIVWDEIVAFWLVLLMVTPVDFAGRVWAFVVFRFFDMVKPPPIRYFDRRFKGGLGIMLDDLVAAFFTLLVIALWRMSV
>NZ_CP046913.1|WP_158948201.1|404849_405854_-|thiamine-phosphate-kinase
MLSEFSLIDRYFAQRARQHTRRAALGIGDDCALIAPAAGEMLAVSTDMLVEGRHFFADVDPHALGHKALAVNLSDLAAMGAAPLGFTLACALPKPREDWLAAFSAGLFELADRYDCELIGGDTTAGPLNLCLTVFGSVRQDAALRRDAARDGDDIWVSGTPGDARAGLGVLRGEWQTSGADAAADVAHFRRALEYPEPRVALGLALRGVARAALDLSDGLAGDLRHILERSRLAAAIDVDALPVSPALARLPRAVQLQCALAGGDDYELCFTAARDQREAVEAAAQQAGVRVTRIGTMSALTSPAAAVPAIAWRDAAGAPLDLTLQGFDHFHAD
>NZ_CP046913.1|WP_158948203.1|406041_408336_+|NADP-dependent-malic-enzyme
MTNSATNKLREAALDYHEFPTPGKIAIAPTKQMINQRDLSLAYSPGVAFACEAIVENPLNAARFTARSNLVGVVSNGTAVLGLGNIGPLASKPVMEGKAVLFKKFAGIDVFDIELNESDPHKLVDVIAALEPTFGGINLEDIKAPECFIVEREARKRMKIPVFHDDQHGTAIVVAAAVTNGLKVVGKDIKDVKLVASGAGAAALACLDLLVDLGLPLENIVVTDLAGVVYKGRTELMDPDKERFARETNARTLAEVVEGADIFLGLSAGGVLKQDMVKQMAAKPLILALANPTPEILPELALEVRPDAVLATGRTDYPNQVNNVLCFPFIFRGALDVGATTITREMEIATVNAIAELARQEQSDVVATAYGIQDLQFGPEYLIPKPFDPRLIVKIAPAVAKAAMDSGVATRPIEDMDAYEQHLQQFVYHSGTTMKPIFQIARAVEPEKKRIVFAEGEEERILRGVQIVVDEKLAKPILIGRPAVIEQRIARYGLRLVAGQDYTVVNTDHDERYRDFWQTYAKLMARKGITQQMAKLEMRRRTTLIGSMLVEKGEADGMICGTVSTTHRHLHFIDQVIGKKEGCNVYGAMNGLVLPNRQIFIVDTHVNVDPTPEQLCEITIMAAEEVRRFGIEPKVALCSHSNFGSSNAASAQKMRDLLVLLQERAPELQVDGEMHGDVAIDANLRREVLPESTLEGEANLLVMPNIDAANISYNLLKTAAGNNIAIGPILLGAAKPVHVLTASATVRRIVNMTALLVADVNATR
>NZ_CP046913.1|WP_158951828.1|408628_409138_+|ribonuclease
MGLRKETESDSGGNVLRASRVTRCFGNGLTERWLSWRTLRRGRHAAAVALVAAAALASGGAQAYRSQPDEGATGIGSISVNELPREAVSTLSLIASGGPFPYEKDGVVFGNFERMLPAHRRGYYHEYTVPTPRARNRGAKRIVCGGSLKRTDNCYYSDDHYASFRRIND
>NZ_CP046913.1|WP_158951827.1|409145_409703_+|barnase-inhibitor
MSGMSDNVYAHDPRVASDLFASGEGNLFQRVMQLKEDGEARDKEAALSLNEETMDLFATVRPNIVQSIRAFRVQDLADEAQRLQQHFLYAFCANAQTKQEVLETIATSFLFPKHFGKNYDGLYDCLTDLVQKAGEQPGFVIVLEGLPIAQKFDKDGRETLLDVFREATEYWAERKVAFRVFYSFA
>NZ_CP046913.1|WP_158948205.1|409823_410564_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MPRFFVGSALQSDEVVTLPDEVTRHVQVLRLQPGDTIVLFNGLGGEYSAEIMEMERRDTQVRVGPYRDIETEPPYRLTLAQGIAGSDKMDWLIEKAVELGATSFVPLTTSRSVVRLSGDRAVRRQAHWQRIVQASCEQCGRNRMPDVASTREIATWLGSMPKRPGEGELRVLLSPRANVSFSTLPVDPPSGEVTVLVGPEGGFSSPEEAAALDHGFIAVGLGPRVLRTETAGIAVLAALAARWGGW
>NZ_CP046913.1|WP_158948207.1|410583_410997_-|VOC-family-protein
MTPPRPAGVPWLTPYLTVREARTSMAFYQAAFGFAVRDSVEDDGAVMHVEMTYHDQLIVMFAPEGAFGSTARTPKSAQTVAPQSFYLYVDDVDAVYARALSAGAKSLSEPQDQFWGDRFAQVEDLDGYRWALARHLS

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Crispr_ID: NZ_CP046913_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046913_2

1344413-1344523

Orphan

Consensus_repeat	Method
AGGACAAGCAGCGTCAGCATGCGCTCG	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NZ_CP046913_2

>merge|NZ_CP046913|2|1344413-1344523|CRISPRCasFinder
AGGACAAGCAGCGTCAGCATGCGCTCGATCAGGCGCAGCGCCAGGCCGAAGCGCCGCAGCGCGCGGCGAACGAGCAGGCCTACCAGGACAAGCAGCGTCAACATGCGCTCG

>NZ_CP046913|2|2|1344413-1344523|CRISPRCasFinder
AGGACAAGCAGCGTCAGCATGCGCTCG	ATCAGGCGCAGCGCCAGGCCGAAGCGCCGCAGCGCGCGGCGAACGAGCAGGCCTACC
AGGACAAGCAGCGTCAACATGCGCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046913.1\|WP_158949621.1\|1344913_1345147_+\|DUF465-domain-containing-protein	unknown	unknown	gnl\|CDD\|377305
NZ_CP046913.1\|WP_158949637.1\|1355850_1356651_-\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|238817
NZ_CP046913.1\|WP_158949623.1\|1345225_1347523_+\|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NZ_CP046913.1\|WP_158949635.1\|1354340_1355639_-\|lysophospholipid-transporter-LplT	unknown	unknown	gnl\|CDD\|236879
NZ_CP046913.1\|WP_158949625.1\|1347748_1348018_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP046913.1\|WP_158949631.1\|1350146_1351427_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046913.1\|WP_158949603.1\|1331552_1332737_+\|GTPase-HflX	unknown	unknown	gnl\|CDD\|274455
NZ_CP046913.1\|WP_158949633.1\|1351533_1354221_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NZ_CP046913.1\|WP_158949613.1\|1338395_1338965_+\|phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|225145
NZ_CP046913.1\|WP_158949607.1\|1334358_1335258_+\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|259803
NZ_CP046913.1\|WP_158949627.1\|1348249_1349485_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225406
NZ_CP046913.1\|WP_158951887.1\|1357047_1357920_+\|TrmJ/YjtD-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223639
NZ_CP046913.1\|WP_158949611.1\|1337015_1338362_+\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_CP046913.1\|WP_027814901.1\|1331256_1331493_+\|RNA-chaperone-Hfq	unknown	unknown	gnl\|CDD\|179001
NZ_CP046913.1\|WP_158949617.1\|1341283_1343641_-\|S1-RNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225094
NZ_CP046913.1\|WP_158949609.1\|1335644_1336796_+\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|237098
NZ_CP046913.1\|WP_158949615.1\|1339286_1341173_+\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|225700
NZ_CP046913.1\|WP_158949629.1\|1349517_1350063_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
NZ_CP046913.1\|WP_158949605.1\|1332873_1334346_+\|FtsH-protease-activity-modulator-HflK	unknown	unknown	gnl\|CDD\|259802
NZ_CP046913.1\|WP_028210024.1\|1335306_1335498_+\|DUF2065-domain-containing-protein	unknown	unknown	gnl\|CDD\|378266

Protein	Function_ID	Function_description	E-value
NZ_CP046913.1\|WP_158949621.1\|1344913_1345147_+\|DUF465-domain-containing-protein	gnl\|CDD\|377305	pfam04325, DUF465, Protein of unknown function (DUF465). Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C terminal of the motor domain (Myosin pfam00063, Kinesin pfam00225). Members of this family may form coiled coil structures.	0.000122078
NZ_CP046913.1\|WP_158949637.1\|1355850_1356651_-\|inositol-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	2.06227e-121
NZ_CP046913.1\|WP_158949623.1\|1345225_1347523_+\|ATP-dependent-DNA-helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	2.76498e-164
NZ_CP046913.1\|WP_158949635.1\|1354340_1355639_-\|lysophospholipid-transporter-LplT	gnl\|CDD\|236879	PRK11195, PRK11195, lysophospholipid transporter LplT; Provisional.	0
NZ_CP046913.1\|WP_158949625.1\|1347748_1348018_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	6.22445e-07
NZ_CP046913.1\|WP_158949603.1\|1331552_1332737_+\|GTPase-HflX	gnl\|CDD\|274455	TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). [Unknown function, General].	0
NZ_CP046913.1\|WP_158949633.1\|1351533_1354221_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NZ_CP046913.1\|WP_158949613.1\|1338395_1338965_+\|phosphoribosyltransferase	gnl\|CDD\|225145	COG2236, COG2236, Predicted phosphoribosyltransferases [General function prediction only].	1.46481e-37
NZ_CP046913.1\|WP_158949607.1\|1334358_1335258_+\|protease-modulator-HflC	gnl\|CDD\|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	1.18808e-85
NZ_CP046913.1\|WP_158949627.1\|1348249_1349485_-\|cupin-domain-containing-protein	gnl\|CDD\|225406	COG2850, COG2850, Uncharacterized conserved protein [Function unknown].	7.48906e-112
NZ_CP046913.1\|WP_158951887.1\|1357047_1357920_+\|TrmJ/YjtD-family-RNA-methyltransferase	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	1.11492e-89
NZ_CP046913.1\|WP_158949611.1\|1337015_1338362_+\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP046913.1\|WP_027814901.1\|1331256_1331493_+\|RNA-chaperone-Hfq	gnl\|CDD\|179001	PRK00395, hfq, RNA-binding protein Hfq; Provisional.	3.80135e-48
NZ_CP046913.1\|WP_158949617.1\|1341283_1343641_-\|S1-RNA-binding-domain-containing-protein	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0
NZ_CP046913.1\|WP_158949609.1\|1335644_1336796_+\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|237098	PRK12421, PRK12421, ATP phosphoribosyltransferase regulatory subunit; Provisional.	1.91994e-163
NZ_CP046913.1\|WP_158949615.1\|1339286_1341173_+\|potassium-transporter-Kup	gnl\|CDD\|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0
NZ_CP046913.1\|WP_158949629.1\|1349517_1350063_+\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	1.0074e-45
NZ_CP046913.1\|WP_158949605.1\|1332873_1334346_+\|FtsH-protease-activity-modulator-HflK	gnl\|CDD\|259802	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	5.23865e-106
NZ_CP046913.1\|WP_028210024.1\|1335306_1335498_+\|DUF2065-domain-containing-protein	gnl\|CDD\|378266	pfam09838, DUF2065, Uncharacterized protein conserved in bacteria (DUF2065). This domain, found in various prokaryotic proteins, has no known function.	1.8122e-13

>NZ_CP046913.1|WP_158949617.1|1341283_1343641_-|S1-RNA-binding-domain-containing-protein
MTETVALKIVQRIATELTVQPRQVAAAVQLLDEGATVPFIARYRKEVTGNLDDTQLRTLEERLLYLRELEDRRAAILASIEEQGKLTDELRNAIEAADSKQVLEDLYLPYKPKRRTRAQIAREAGLQPLADALLANPLLDPQTEAAQYVDAEKGVADVKAALDGARDILSEQFGETAELLGKLRDWLYNQGMVMSSVVEGKENEEGEKFRDYYDYSETIKTVPSHRALALFRGRNAGVLMVKLGLGGEQDALVPHPGEALIARHFGIANQGRPADKWLSDVCRWCWRVKVQPHIENELLTNLRELAETEAIRVFARNLNDLLLAAPAGPKAVIGLDPGLRTGVKVAVVDRTGKVLATDTIYPHEPRRDWDGSIAKLARIAAQTQAELISIGNGTASRETDKLAAELMSKHPELKLQKIVVSEAGASVYSASELAAKEFPSMDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQRELARSLDAVVEDCVNAVGVDANTASVALLARVSGLNATLARNIVDYRDANGPFPSRDHLKKVPRLGDKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKIKRTIGDVLGNREALSGLSPSEFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFRDGVEKVSDLVPGMLLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVKRQRIALTMRLDDDVASGGTARGGAPAGGNRESRDSRSGGRDNRGGGGQRSREAEPAGAMAAAFAKLKQR
>NZ_CP046913.1|WP_158949615.1|1339286_1341173_+|potassium-transporter-Kup
MTTSTHEAKQPLPSLAVAAIGVVFGDIGTSPLYSLKEAFSPSHGIPLNETSILGVISLLFWAIVIVVSVKYVLFVMRADNNGEGGVLALMALAMRSFNRKSKTAVVLTALGIFGACMFYGDAVITPAISVMSAVEGLEIAAPKLTHLVLPLTMVILILLFWIQRHGTALVGRLFGPIMVLWFITIAVLGISHIVQSPAIIKAINPYYAVSFMGAHLLQAYVVLGSVVLVLTGAEALYADMGHFGAKPIRCAWYTLVMPSLVLNYFGQGALLMQNHRAIENPFFLLAPDWALLPLVVLSTVATVIASQAVISGAYSLTSQAILLGYVPRMKVLHTSDLAIGQIYVPVVNWMLLFIILCIVVAFKSSDNLAAAYGIAVTATMVITTVLVGVVMVNIWKWNRALVACIIAVLLAVDLGFFGANLLKVEEGGWLPLGIGALLFFLLMTWFKGRMIVKDRTAADGIPLMPFLQGLLAHPPHRVSGTAIYLTGSETLVPVSLLHNLKHNKVLHERTIFLTFVIRDIPYVSNAERVTVKDIGGGLLLAKAAYGFNETPDVQAVLEEVGRQHNMTFEMMDTSFFLARETVVPTQLPGMSIFRERIFAWMHQNAAKPTDFFSIPANRVVELGTKIEI
>NZ_CP046913.1|WP_158949613.1|1338395_1338965_+|phosphoribosyltransferase
MIQMMDPRNDEKNLWVGWDEYHRLIELLALKVHESRWKFDQILCLARGGLRVGDQLSRIYDLPLAILATSSYREAAGTEQGELDIAQYITMTRGHLEGNVLLVDDLVDSGVTLARVQEHLKERYPAVTGVRSAVLWYKGCSKVTPDYFVQHLPTNPWIHQPFEEWDTVRPHNLGAWIKRGLAQAQEGQK
>NZ_CP046913.1|WP_158949611.1|1337015_1338362_+|adenylosuccinate-synthase
MSASAVNVTPGRNVVVVGTQWGDEGKGKIVDWLTDHAQGVVRFQGGHNAGHTLIIGGKKTILRLIPSGIMRAGVACYIGNGVVLSPEALFKEIGELEAAGIDVQKRLFISEATTLILPYHIAIDQAREAKRGAAKIGTTGRGIGPAYEDKVARRGLRVQDLFEPENFAARLRENLDYHNFVLTQYLGAPAVDYQETLDTMLSYAERLKPMVTDVSRRLYDVNHEGGNLLFEGAQGTLLDIDHGTYPFVTSSNCVAGAASAGAGVGPQKLNYVLGITKAYCTRVGSGPFPSELYDADNADRQEEVGLTLAKVGKEFGSVTGRPRRTGWLDAAALRRSIQINGVTGLCITKLDVLDGLEEVKLCVGYKVAGQDVDILPRGASQVAACEPVYETFAGWSESTIGITQWDALPKSAQAYLARVQEVAGVPIDMVSTGPDRDETILLRHPFKV
>NZ_CP046913.1|WP_158949609.1|1335644_1336796_+|ATP-phosphoribosyltransferase-regulatory-subunit
MSTWLLPENIADVLPSEARKIEELRRRLLDRFRAYGYELVMPPLLEYLESLLVGSGHDLNLRTFKLVDQLSGRTLGLRADMTPQVARIDAHLLNRQGVTRLCYAGNVLHTRPRGLHATREQIQIGAEIYGHAGLEADLEIQQLMLDALRLAGLAKVRLDLSHAGVLAALLEADPAAAALGDALYEALASKDVPRVAELTQNLAAPSRDALRALPALYGDASVLDEARARLPALPGIARALDDLAFLVREVGGAELMIDLAELGGYAYHSGVMFAAYVDGVPNAVARGGRYDKVGEAYGRARAATGFSLDLREVARISPVEARSSAILAPWRHDDTLRTAVAALRDAGEVVIQALPGHEHDVDEFAFDRVLVERDGAWVVETRG
>NZ_CP046913.1|WP_028210024.1|1335306_1335498_+|DUF2065-domain-containing-protein
MDIAGSLLLAIALMLIIEGMFPFVFPTAWRDTFRKIAERPPHHIRIGGLIVMGLGLVLLMLAT
>NZ_CP046913.1|WP_158949607.1|1334358_1335258_+|protease-modulator-HflC
MNKIIALVVAVVVLVLVASSAVFMVDPRHVAILSSSGGSTATLAGPGLHVKLPPPFQTATLIDTRIQAFDAPDADRYTTSDKTELLVNPVVRYRIGEPLKLFAATKGDAQTLSDRLAALTRDALGDAFSKVTLPEALGQQEAIANSARDALRQAAAALGIDVIDIELTRLDYPPELADTVYKRMSAVREQGAAEERAKGAAEAQQIKDDAERKQQGIVADAYGQAQAIKGEGDGKAAAIAAQAFGRDPDFYRFYQSMQAYRDSFKPGDVVVVDSSSDFFRFMRSPNGDASPAPAAPRKH
>NZ_CP046913.1|WP_158949605.1|1332873_1334346_+|FtsH-protease-activity-modulator-HflK
MNDYNKRTGWQRARAIFSLNDPRWGRGEGNGQRPEDARRPSGNNGNKGGNNGNDGDGPPDLDEMWREFNRRVSAFFGRRNKGPGGFGPRPDNGHGARIGVGIVLGVLIAIYIGSGVFVVQEGQAGVVLQFGQYRHTVGQGVHWRMPYPFQTHEIVNVGQIRTVEIGRNNLVRPANVKDAAVLTHDGDILDVRFSVQYQVKQPTDYLFRSVDPDLTVSQAAQAAVRTVVGARSTSDMLYADREPIRAQLADTIQHALDQYKTGLGVTGVTIQSIAAPDRVQAAFDDEAKAHQDRERAKRDAQAYADQLLPRAQADATRLVDDAKAYSDRVVAQAQGDAQRFTQVYEQYARAPAVIRERMYLDTMQHIYSNTTKVFVDSKSGNNVIYLPLDKLVDATRQRAATAAAAVASSGAATAPAAANAASDANAAPAPAISGDAQQQGAQPATPPAAQSAAPQQNAAPASASDAAAAASDAFRSRDAFRSRGREDDTQ
>NZ_CP046913.1|WP_158949603.1|1331552_1332737_+|GTPase-HflX
MNSANLINAALVGIDFGKTDFEASLEELSLLAKSAGASPVVTLTGRRSSPDAAMFIGSGKAEELRLACEANDIEIVIFNHALSPAQQRNLERALNRRVVDRTSLILDIFAQRARSHEGKLQVELAQLQYLATRLVRAWTHLERQKGGIGLRGPGETQLETDRRLIGERIKMLQGKLAKLRRQHGTQRRQRERTRTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVWLGDQVGQIVLSDTVGFIRELPHQLVAAFRATLQETVQADLLLHVVDASSAVRLDQIDQVNGVLHDIGADTIRQVLVFNKIDAVPELAARGGTVERDEYGNISRVFLSARTGVGLDALRAAIAEIASAEPLADASQPLAADWNAALQEPRREHEHER
>NZ_CP046913.1|WP_027814901.1|1331256_1331493_+|RNA-chaperone-Hfq
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDSEAS
>NZ_CP046913.1|WP_158949621.1|1344913_1345147_+|DUF465-domain-containing-protein
MREQRAVKAEVLRDRILQLETEHGDLDRLIDRMADTADYDDLELQKLKKRKLKVKDNIILLQLQLDPDSTKTSDGHA
>NZ_CP046913.1|WP_158949623.1|1345225_1347523_+|ATP-dependent-DNA-helicase
MNSPTVSRSRPARDSDAPAADARATGSSASSVVVAPAKLSARRAAELQELFAANGLLARKIDGYRPRAAQIEMSSAVAAAMEASAQAQPDPAMFELQARPARRLERGAPVASAGQADVEEAARAASDAGDNTLIVEAGTGTGKTYAYLVPAMLWGGKVVVSTGTKHLQDQLFARDIPTVRDALAVPVSIAMLKGRSNYLCHYYLQRTADNGRLPSRQETAYLQEIVRFAKITRSGDKAELASVPETAAVWSMVTSTRDNCLGQECPHYKDCFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPSANTIIFDEAHQLPETATLFFGETLSTTQFLELARDCVAEGLSHARDAVEWVKLAAGLERAARDVRLAFKEDSLRLAITQLPENHPLFDALDALQTELGVLATALGGQAERAESLGACLRRARELQGILAGWTVPAADATPQRDARKSETKAGDESAHAHDADEKVRWVEVFSHTVQLHETPLSVAPIFAKQRAGVPRTWIFTSATLSVKGDFTHYAAQMGLSSRRSMTLPSPFDYPQQGLLYVPRNMPQPSSPQFTDAVFDAALPAIEASGGGVFMLCTTLRAVDRIAAKLRDTIEARGWNTPLLVQGDASRTELLERFRAYGNAILVGSQSFWEGVDVRGDALSLVVIDKLPFAPPDDPVLAARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYGRRIWQSLPPFKRTREIEVVQAFFENEAAQQEPGTDD
>NZ_CP046913.1|WP_158949625.1|1347748_1348018_-|hypothetical-protein
MKKSLLVASLLAAVALAACNKSSDQAAAPASDATAASAPAAAASDSAAAASGAAAAASDAAASATAAASDAGAAASDAGAAAPASGASQ
>NZ_CP046913.1|WP_158949627.1|1348249_1349485_-|cupin-domain-containing-protein
MPKRSPDHPVDARKQRAAVSLASPAPNVPTSLLGGLTPAQFMRKYWQKKPLLIRQAIPDIEAPLSREELFELADNDDVESRLITHFRRRWALEHGPFSPDELPTPKTRQWTLLVQGADLHDDRARALLERFRFAPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVHGKRRWRIGAQRDLSLVDGLPLKVLANFEPEEEWLLEPGDMLYLPPHIAHDGVAEGECMTCSIGFRSPSTNELTSQFLYWLAERRGDEPASGKNALYRDPDQPAVEHPAQLPAALVERVAGVLAKVRWNDADVSSFVGSYLSEPKSNVVFDSPEKPLDERRFVAQAAKSGITLDRRTILLYDSRSYYLNGEQYLLKEARKWLPALADNRFLDGKRFVTLSHDSCVTALLHEWYRAGWIRVGVLA
>NZ_CP046913.1|WP_158949629.1|1349517_1350063_+|peptidylprolyl-isomerase
MKIAKDTVVSVAYKLSDTQGNLIEESDEPMVYLHGGYDGTFPKIEEVLDGKEPGFETQIQLEPTDAFGEYDPELVKIEPRTRFPEPLEVGMQFEGTPEEGDEDLDTLIYTVTDVAEDKVVLDGNHPLAGMALRFALTVKEVREATEDEIEHEHAHGADGLEVVDEDEEDDGEEGDAKPTLH
>NZ_CP046913.1|WP_158949631.1|1350146_1351427_-|hypothetical-protein
MWLAISAHLACAQSPRYAFAVIANVVTSPAEEPAAQRLVDAIGRDSQIAFVVYDGNLKGAHELCADHVYDNRHALLDASRPPLVFVPGERDWVTCGSNGSGAYDPVERLDFLRQNFFGDSKSLGQAPLTLTRESEVSRFRPYRENVRWQLGDTVFIGLNAPDGNNHYLNAGGRNGEFEDRVIANGFWLEHAAEYAKRRNARAIVIFMQGNALAEHYDRTDHFAWLRFRRAPRDGYAELRRSLVRLAQAFRGPIIIVNTDEAKLARGFAIDQPLRTEKGTRIDNVTRIAFSLRDPQTQWLQVEADMARSTPLRVSVRDVPKHLPLLPAQPPALAPGAASSTPLPDMPEVSSMPDVTEIPGMPQAPDVTPTPPAPGGASSTFNSPASNPVVMPDWPGRNGNVGNLGNFDNNGAHKAEPPGAPASGGSY
>NZ_CP046913.1|WP_158949633.1|1351533_1354221_-|DNA-mismatch-repair-protein-MutS
MATHTAGPADIAQHTPMMQQYLRIKADHPGTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASAGNPIKMAGVPHHAVEQYLAKLVKLGESVAICEQIGDPATSKGPVERKVVRVVTPGTLTDAALLSDKNDVYLMAVCPAHNRRGVTVNVGLAWLNLASGGLRLAEVAPDQVAAAFERIRPAEILVAELPAESAGWAPPTGHGALTRVPAWHFDVSSGKQRLCDQLDVASLDGFGAQTLVSACGAAGALLLYAAATQGQQLRHVRSLKVEVETEYIGLDPATRRNLELTETLRGTESPTLCSLLDTCSTTMGSRLLRHWLHHPPRDAAVAQTRQQAIGALLEAPPQASVDTLRSALRQIADVERITGRLALLSARPRDLSSLRDTFAALPALRERVTAASGAVPSLMHLAEALEPPAECAALLARAVTPEPAAMVRDGGVIARGYDADLDELRDISENCGQFLLDLETRERTRTGIANLRVEYNKVHGFYIEVTRGQTDKVPDDYRRRQTLKNAERYITPELKTFEDKALSAQERALAREKALYDALLQTLLPFIPDCQRVACALAELDLLAAFAERARALDWNAPVFSEMPGIEIEQGRHPVVEAQVEQFIANDCVLTAERKLLLITGPNMGGKSTFMRQTALIALLAYVGSYVPAKRARFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLASNGCHTLFATHYFELTQLPAEFPHAANVHLSAVEHGHGIVFLHAVDEGPANQSYGLQVAQLAGVPAPVIRAARKHLVHLEQQSAGRPAPQLDLFAAPAPDFSDDFDEAPTQLEDRAEADPAASLVAERLRALDPNELRPREALDLLYELHELATAPDAKR
>NZ_CP046913.1|WP_158949635.1|1354340_1355639_-|lysophospholipid-transporter-LplT
MKKGFYTIIAAQFVSSLADNALLIAAIALLNVISSPAWVTPLLQIFFTVSYVLLAPFVGAFADALQKRHVMFVSNALKAAGCLLMIAGVHPMIAYGVVGFGAAAYSPAKYGILTELLPAERLVAANAWLESATVLSTIVGTMMGGALVSTYADRFVAHHHLPLLHSAADLAMFAVMLTYAAAALINIGIPDTHARYENRLKQPGRLVHDFVHCFNVLWADKLAQIALWVTTLMWGAAVTLQLLVLKWADANLGLSLSKAAVMQGVTGLGIALGATAAAAWVSLRASLKVLPVGVLCGVVSIAMAFYNKNLFPAGEGIRVGTFILPFYLLFAYPLMVLLGTLAGFFIVPMNALLQHRGATLLSAGHSIAVQNFNQNLAVLLMLGAYALLLTAKMPVQWIIVVFGIFVATLIWLAKRRSAANARTVDLAALVDE
>NZ_CP046913.1|WP_158949637.1|1355850_1356651_-|inositol-monophosphatase
MHPMLNIAVKAARRAGQIINRASLDLDLVQVAKKQHNDFVTEVDKAAEAAIIETLKTAYPDHAILAEESGESENESEYQWIIDPLDGTTNFIHGFQYYCVSIALAHKGLVTQAVVYDPTRNDLFTASRGRGAFLNDRRIRVGRRDRLADGLIGTGFPFREKDGLDSYCELFAAMTNACAGLRRPGAAALDLANVAAGRMDGFFEQGLNPWDVAAGSLLVTEAGGLVGNYTGDSDFLRVGEVVAGNPKIYAQMVPILSKFTRISKGA
>NZ_CP046913.1|WP_158951887.1|1357047_1357920_+|TrmJ/YjtD-family-RNA-methyltransferase
MHPDSAAPAGAQTSAPHPDTHDVHESLAGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPQVHCDPEAVAMASGADDVLAAAHIVPTLADALAGVQWSLALTARTREYGPPPAAPRHAVQDACRQVAHGGDIALVFGNERTGLSNEDVERCTALAHIPANPAYSSLNLAQAVQVLAYELRLAYLDAHAPGAASHPAVAAGAAAQPGVAGPLAASDDIERMYVHLENALIALDFLDPANPKKLMSRLRRLFARSGLEREEVNIVRGIAKHILMLKGKGDGR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

555634 : 564963

Pandoravirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158948438.1\|555634_557593_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	9.5e-146	47.7
WP_158948440.1\|557882_559019_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.0e-22	29.6
WP_158948442.1\|559098_561027_+	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	7.6e-55	36.3
WP_158948444.1\|561128_561944_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	8.2e-35	31.7
WP_158948446.1\|562001_562697_-	deoxynucleoside kinase	NA	NA	NA	NA
WP_158951832.1\|562693_563269_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	S4VNV0	Pandoravirus	2.5e-14	33.9
WP_158948448.1\|563340_564963_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	1.1e-25	30.7

DBSCAN-SWA_2

704843 : 713684

Escherichia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158948648.1\|704843_705905_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.6e-86	47.6
WP_158948650.1\|705916_706810_+	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	1.2e-98	59.2
WP_158948652.1\|706794_707346_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.5e-51	54.1
WP_158948654.1\|707353_708250_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	8.8e-30	34.6
WP_158948656.1\|708280_709267_+	ADP-glyceromanno-heptose 6-epimerase	Q58M42	Prochlorococcus_phage	2.4e-28	32.7
WP_158948658.1\|709268_710189_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_158948660.1\|710248_711031_+	ABC transporter permease	NA	NA	NA	NA
WP_158948662.1\|711040_711790_+	ATP-binding cassette domain-containing protein	R4TX06	Phaeocystis_globosa_virus	1.3e-05	33.3
WP_158948664.1\|711791_713684_+	glycosyltransferase	A0A1V0SAH6	Catovirus	7.1e-05	34.0

DBSCAN-SWA_3

2346673 : 2353338

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158951113.1\|2346673_2347792_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2I2L4R9	Orpheovirus	1.3e-46	31.9
WP_158951114.1\|2347843_2348473_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.2e-28	38.7
WP_158951115.1\|2348901_2350731_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	8.0e-30	28.2
WP_158951116.1\|2350727_2351084_-	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	7.5e-17	55.3
WP_158951117.1\|2351094_2351385_-	excinuclease ABC subunit A	NA	NA	NA	NA
WP_158951118.1\|2351597_2352749_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	9.8e-50	35.7
WP_158951119.1\|2352825_2353338_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.6e-20	39.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046915

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP046916

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP046913

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection