CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047023	Paraglaciecola sp. L3A3 chromosome, complete genome	4 crisprs	RT,DEDDh,csa3,DinG,cas3,WYL,PrimPol	1	0	0	0

Cas Category Instructions

Results visualization

1. NZ_CP047023

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047023_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047023_1

1316676-1316792

Orphan

Consensus_repeat	Method
AAATGTCTGGAACATTTTTGAACGTGCTTTAGCACGGCCGCGAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047023_1

>merge|NZ_CP047023|1|1316676-1316792|CRISPRCasFinder
AAATGTCTGGAACATTTTTGAACGTGCTTTAGCACGGCCGCGAAGTGGCGAGGGCATGGATAGCCCGAGTACAAATGTCTGGAACATTTTTGAACGTGCTTTAGCACGGCCGCGAAG

>NZ_CP047023|1|1|1316676-1316792|CRISPRCasFinder
AAATGTCTGGAACATTTTTGAACGTGCTTTAGCACGGCCGCGAAG	TGGCGAGGGCATGGATAGCCCGAGTAC
AAATGTCTGGAACATTTTTGAACGTGCTTTAGCACGGCCGCGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047023.1\|WP_158967318.1\|1326706_1327483_-\|inositol-1-monophosphatase	unknown	unknown	gnl\|CDD\|236753
NZ_CP047023.1\|WP_158967314.1\|1321938_1324830_+\|peptidase-M16	unknown	unknown	gnl\|CDD\|185056
NZ_CP047023.1\|WP_158967322.1\|1328533_1329343_+\|serine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|200082
NZ_CP047023.1\|WP_158967293.1\|1303974_1305060_-\|electron-transport-complex-subunit-RsxD	unknown	unknown	gnl\|CDD\|234844
NZ_CP047023.1\|WP_158967297.1\|1307311_1307878_-\|electron-transport-complex-subunit-RsxB	unknown	unknown	gnl\|CDD\|235347
NZ_CP047023.1\|WP_158967295.1\|1305062_1307303_-\|electron-transport-complex-subunit-RsxC	unknown	unknown	gnl\|CDD\|235334
NZ_CP047023.1\|WP_158967309.1\|1319005_1320850_+\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NZ_CP047023.1\|WP_158967305.1\|1317421_1318537_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP047023.1\|WP_158967301.1\|1311159_1313178_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP047023.1\|WP_158967307.1\|1318579_1318918_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NZ_CP047023.1\|WP_158967291.1\|1303303_1303975_-\|electron-transport-complex-subunit-RsxG	unknown	unknown	gnl\|CDD\|179350
NZ_CP047023.1\|WP_158967299.1\|1307877_1308459_-\|electron-transport-complex-subunit-RsxA	unknown	unknown	gnl\|CDD\|235352
NZ_CP047023.1\|WP_158967311.1\|1320860_1321802_+\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
NZ_CP047023.1\|WP_158967320.1\|1327796_1328531_+\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	unknown	unknown	gnl\|CDD\|185069
NZ_CP047023.1\|WP_158967324.1\|1329446_1329935_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|236777
NZ_CP047023.1\|WP_158967316.1\|1324845_1326516_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|226229
NZ_CP047023.1\|WP_158967287.1\|1301889_1302522_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|182661
NZ_CP047023.1\|WP_158967303.1\|1314467_1315868_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP047023.1\|WP_158972884.1\|1309862_1311155_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240554
NZ_CP047023.1\|WP_158967289.1\|1302577_1303276_-\|RnfABCDGE-type-electron-transport-complex-subunit-E	unknown	unknown	gnl\|CDD\|237091

Protein	Function_ID	Function_description	E-value
NZ_CP047023.1\|WP_158967318.1\|1326706_1327483_-\|inositol-1-monophosphatase	gnl\|CDD\|236753	PRK10757, PRK10757, inositol-1-monophosphatase.	2.18624e-125
NZ_CP047023.1\|WP_158967314.1\|1321938_1324830_+\|peptidase-M16	gnl\|CDD\|185056	PRK15101, PRK15101, protease3; Provisional.	0
NZ_CP047023.1\|WP_158967322.1\|1328533_1329343_+\|serine-O-acetyltransferase	gnl\|CDD\|200082	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase. Cysteine biosynthesis [Amino acid biosynthesis, Serine family].	3.4122e-96
NZ_CP047023.1\|WP_158967293.1\|1303974_1305060_-\|electron-transport-complex-subunit-RsxD	gnl\|CDD\|234844	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed.	0
NZ_CP047023.1\|WP_158967297.1\|1307311_1307878_-\|electron-transport-complex-subunit-RsxB	gnl\|CDD\|235347	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional.	1.49014e-122
NZ_CP047023.1\|WP_158967295.1\|1305062_1307303_-\|electron-transport-complex-subunit-RsxC	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0
NZ_CP047023.1\|WP_158967309.1\|1319005_1320850_+\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	0
NZ_CP047023.1\|WP_158967305.1\|1317421_1318537_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NZ_CP047023.1\|WP_158967301.1\|1311159_1313178_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP047023.1\|WP_158967307.1\|1318579_1318918_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	4.25665e-50
NZ_CP047023.1\|WP_158967291.1\|1303303_1303975_-\|electron-transport-complex-subunit-RsxG	gnl\|CDD\|179350	PRK01908, PRK01908, electron transport complex protein RnfG; Validated.	4.78264e-97
NZ_CP047023.1\|WP_158967299.1\|1307877_1308459_-\|electron-transport-complex-subunit-RsxA	gnl\|CDD\|235352	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional.	3.77102e-117
NZ_CP047023.1\|WP_158967311.1\|1320860_1321802_+\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	2.48546e-136
NZ_CP047023.1\|WP_158967320.1\|1327796_1328531_+\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	gnl\|CDD\|185069	PRK15114, PRK15114, tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional.	1.0654e-137
NZ_CP047023.1\|WP_158967324.1\|1329446_1329935_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|236777	PRK10857, PRK10857, Fe-S cluster assembly transcriptional regulator IscR.	1.15554e-80
NZ_CP047023.1\|WP_158967316.1\|1324845_1326516_-\|diguanylate-cyclase	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	3.88814e-63
NZ_CP047023.1\|WP_158967287.1\|1301889_1302522_-\|endonuclease-III	gnl\|CDD\|182661	PRK10702, PRK10702, endonuclease III; Provisional.	3.02968e-145
NZ_CP047023.1\|WP_158967303.1\|1314467_1315868_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP047023.1\|WP_158972884.1\|1309862_1311155_+\|MATE-family-efflux-transporter	gnl\|CDD\|240554	cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	3.49905e-136
NZ_CP047023.1\|WP_158967289.1\|1302577_1303276_-\|RnfABCDGE-type-electron-transport-complex-subunit-E	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	1.19306e-129

>NZ_CP047023.1|WP_158967303.1|1314467_1315868_+|glutamate--tRNA-ligase
MSVVTRFAPSPTGYLHVGGARTALYSWLYAKSQGGKFVLRIEDTDIERSTQAAIDAILEGMQWLGLDWDDGPYYQTKRFDRYNQLIDQLLSEGKAYKCFMPAAELDAIREQQMANGEKPRYPGTWRDRTDYPEGQPFAIRFKTPLEGSVTIKDHIRGEIVIANQELDDLIIRRTDGAPTYNFCVVVDDWDMGISHVVRGEDHINNTPRQINILQALGAPIPEYAHVSMILGDDGKKLSKRTNAVGVMEFRDDGYLPQALLNYLVRLGWSHGDQEIFSVDEMIELFSLDAIGQSASAFNTDKLIWLNQHYIKTLPASEVAEHAKWHFAQQGIDISNGPALEDVITAQADRVKTLKELASISAYFYQDYENFDEKAAKKHLRPVAKEALLLVQTKLSALSEWNPETIHQAIDQTAEELGVGMGKVGMPLRVAVTGSGNSPSLDVTLNLLNQAEIEQRITKALKYIANR
>NZ_CP047023.1|WP_158967301.1|1311159_1313178_+|excinuclease-ABC-subunit-UvrB
MNRPFELSSSYSPAGDQPKAIEALVEGLEDGLARQILLGVTGSGKTFTMANVIQQVQRPTLILAHNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEHIEQMRLSATKSLMERRDVIIVSSVSAIYGLGDPESYMKMLVHFRQGDIMNQRDILRRLAEIQYTRNDVAFERGTFRVRGDVIDVFPADSEREGIRVELFDEEIERISIFDPLTGAIEKTVTRATVFPKTHYVTPREKILDAIEHIKVELKERREQLKSVNKLVEEQRVSQRCQFDIEMMQELGYCSGIENYSRYLSGRPPGDPPPTLIDYFPADGLLFIDESHVTVSQIGAMYKGDRSRKETLVEYGFRLPSALDNRPLKFEEFERISPQTIYVSATPGKFELATVPEEDIVEQVVRPTGLIDPEIEVRPVGTQVDDLLSEIHKCVAKNERVLVTTLTKRMSEDLSDYLDEHGVKVRYLHSDIDTVERIEIIRDLRIGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTMGRAARHLNGRAILYGDRITGSMQRAMEETDRRREKQKAHNLKHGITPMQLNKPITDIMDVGDGKSDQGNKVKLRLVAEKGKKYQTLSTPQLLQKITELEKVMFKAAKDLDFEKAAGLRDEIEEYRAQIVKNA
>NZ_CP047023.1|WP_158972884.1|1309862_1311155_+|MATE-family-efflux-transporter
MIVGMIMLMTFGLVDTFFIGMIGTQELAAISFTFPVTFTVISLNIGLGIGTSAVIGKFMGSGAHDKAKETATGALMLTFVLAISLAIVGVLSIESIFTLLGADQSLLPLIKDYMVVWYAAGLFLAMPMVGNSVLRASGDTKTPSYVMAVGGFVNVLLDPLLIFGWGPIPALGIQGAAIATLIAWAVGLFYILYLLAIKRKLIEPRLLNWQQLKRSTGGILRIGIPAAGANMLTPVATGVVTALVAGYGNTAVAAWGVGGRLESIALIVVLSLSMSLPPFISQNFGANNLERVNQAYSLCLKFILAWQLIIFAIIAFIAPFLADIFTDDPVVAETIVIFLSIVPLGYGLQGVIILTNSSFNAVHLPMSALGLSIMRLFIFVVPISYFGGLLFDLKGIFAAAVVANLSVALIAFLWFKHILKNKIKLTAKEA
>NZ_CP047023.1|WP_158967299.1|1307877_1308459_-|electron-transport-complex-subunit-RsxA
MTDFLLLLIGTVLVNNFVLAQFLGLCPFMGVSGKLETAIGMSMATTFVLTLASLSSYLVEHYILLPLDIGYLRTLSFILVIAVVVQFTEMVVHKTSPTLYRLLGIFLPLITTNCAVLGVALLNINKDHNFVESIIYGFGAAAGFSLVLILFAAMRERLAVADVPKPFKGASIGMITAGLMSLAFMGFTGLVKF
>NZ_CP047023.1|WP_158967297.1|1307311_1307878_-|electron-transport-complex-subunit-RsxB
MSLTFMILTALITIGIMALIFGSILGFAAVKFKVEGDPLVEQIDAILPQTQCGQCGYPGCRPYAEAIANGDDINKCPPGGEATIKKLADLMGVEATALDSAHGQEDVKKVAYIREDECIGCTKCIQACPVDAILGAAKQMHTIITDECTGCDLCVEPCPVDCIDMIPVATNTASWQWKLDPIAIKQIN
>NZ_CP047023.1|WP_158967295.1|1305062_1307303_-|electron-transport-complex-subunit-RsxC
MQTHFDDIINKLDSNELWDFPGGIYPAERKELSNQQPIAQLPIAKQLFIPVKQHTGIEGHIIVEVGQHVLKGQALTKSTNPYAVPVHAPTSGVVSAIQPHVSPHPSGLPELTIIIDSDQQDAWAELTPFIDYQSHPKMDVLGKICDAGISGMGGAGFPVHIKLSTHKEVEFLIINGVECEPYITSDDRLMREHAWQIRQGIDVLTHLLSPKQVIIAIEHNKPEAIEAMQLACRENPLYKVCEIPTKYPSGGEKQLIQIVTNREVPAKGLPIDVGVISQNVGTCFAIADAIFSGKPLIQRVVTVTGEAMARPANYWALIGTPISHILDECQYQAEKQTETKVIMGGPMMGFAVANESVPVVKITNCILVPADKEIATLHEQACIRCGACADACPASLLPQQMFWHAKAKELDKVQEYNLFDCIECGACAYVCPSEIPLVHYYRVAKSEIRAEKQEKELADKARERFEKRAARLEADQKARDEKHRLAAEARKQAMASKGNDAKDKIAAALARAKAKKQALADTVNAPNADSETGNTETSGTTANTEQNSEIAEAPAEQKSASSNQRVQAAISRAKAKKAAAQAAKQQSEANQAKEIVEPEVKKSAVVSQSTADSLEIQAAEIVEQTKTTELNQQVVSIEPAPQEQVVTKQGLTQQVSSEQADTASQTSKEQQKQARIASAVAKAKRAAKNKNQEPQPQDAEQKTTPLSANEQIENKKRRIAAAVAKAKAKKLAEQALKNKSVNKGDN
>NZ_CP047023.1|WP_158967293.1|1303974_1305060_-|electron-transport-complex-subunit-RsxD
MNFKLTSSPHQHVRRNTGDVMKLVILGLVPGVLMQTWFFGWGTLIQVIIAILTATVTEAAILEMRKRDFELALKDYSATVTAILLAISIPPFAPWWIIVIGTVFAIGIVKQLYGGLGFNVFNPAMAAYVMLLVSFPVHMTQWLPPMNLAQYSHNFLDAVYAIFTTFSVDGFSLAQLRTDIDGVTMATPLDTVKTGLIQGYTYSEGLDHTIFNSVINDVGVASSWISLSYLAGGLFLLKQKVINWHIPISMIAGLFFCALFMSLVDSDLYPTATFHLLNGSIIIGAFFIATDPVSASTTNKGRLIYGAAIGFWVYVIRTWGGYPDAIAFAVVIMNMAVPLIDYYTRPRTYGHSAAQTKKGAK
>NZ_CP047023.1|WP_158967291.1|1303303_1303975_-|electron-transport-complex-subunit-RsxG
MSQTIQNNMLRNGLILAIFALVTTGLIALTYFGTKDQIAIQQQQKLLSILHEVIDEQSYDNQVQFDCALVTDDSLLGNKAPQKVYRATKQGKAIAVAIETTAPDGYSGKIQLVVGMYSPAPETAVVSGVRVLKHKETPGLGDKIELRISNWVLDFNQQKYTADTSYMWTVKKDGGQFDQFTGATITPRAVAKAVRKSIEYYLANQDSIFSADNACQLSASGSK
>NZ_CP047023.1|WP_158967289.1|1302577_1303276_-|RnfABCDGE-type-electron-transport-complex-subunit-E
MSEFKELTWQGLWKNNPALIQLLGLCPLLAVTQTLTNGLGLGIATTLVLIGSNATVSLIRNLIPNEIRIPIFVMIIAAFVTIIQLLMNAYTFKLYQALGIFIPLIVTNCAIIGRAEAYASKHAVGHSAFDGLMMGLGFTLVLVLLGTIRELLGNGTLFNGANLLLGDWALVLRITVFETDSPFLLAILPPGAFIFMGLIIALKNILDAHMENIFAAKKEQKVVQRARVTTEN
>NZ_CP047023.1|WP_158967287.1|1301889_1302522_-|endonuclease-III
MNKTKRLEILTRLRDNNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATDKLYPVANTPQAILDLGLDGLKSYIKTIGLFNTKAVNTLKTCQMLLDLHNGEVPENRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIDRVSNRTKFAPGKNVIEVEQKLLKVVPAEFKVDVHHWLILHGRYTCVARKPRCGSCIIEDLCEFKDKTE
>NZ_CP047023.1|WP_158967305.1|1317421_1318537_+|tRNA-guanosine(34)-transglycosylase-Tgt
MKFELENTDGKARRGRLIFERGVVETPAFMPVGTYGTVKGMTPEELKETGAHICLGNTFHLMLRPGTEIVKQHGDLHDFMHWDKPILTDSGGFQVFSLGELRKITENGVTFRSPINGEKILLTPEKSMQVQRDLGSDIVMIFDECTPYPATESEARVSMELSLRWAKRSKDEHGDSPAALFGIIQGGMYEGLRDVSLQGLEEIGFDGYAIGGLSVGEPKEEMIKVLDHTTDQIPADKPRYLMGVGKPEDIVEAVRRGIDMFDCVMPTRNARNGHLFVTNGVVKIRNAVHKTDTGPLDDKCDCYTCKNYSRSYLHHLDKCNEILGARLNTIHNLRYYQRVMQGLRDAIAANQLDEFVADFYSQKELPVPPLS
>NZ_CP047023.1|WP_158967307.1|1318579_1318918_+|preprotein-translocase-subunit-YajC
MSLFISDAHAQAAPGGAAGGGFEMLIMLGVFGLIFYFMLYRPQAKRVKEHKNLVSALSKGDEVLTQGGMVGKIAKVSEEKDFVELSLNDSTNIVVQKSAISAVLPKGTMKAI
>NZ_CP047023.1|WP_158967309.1|1319005_1320850_+|protein-translocase-subunit-SecD
MLNQTPLWKYFLVIFVVGMCALYASPNLYGEDHAVQISASKNAVVNESTVSQVKSELAAANISTKKVEFEDGQILVRLNDSDSQLVARERIEKSLGENYIVAMNLAPDTPEWLEALGGVPMKLGLDLRGGVHFLMEVDMKSALEKSYEDMVGDFRTALREEGIRYRTVKQMDDGVDIYFRDQETLDKADFFLKNRNRDLVFNEKSGLIISVSMSEQKLKETRDYAVKQNITIIRNRVNQLGVAEPTVQKQGPDRIVVQLPGIQDTAKAKEILNATATLEYREVDIDHDVRDAINGRVPPGSELLPYEKRGPQLLKKRVIVKGSEIIDANSGVDQNGMPKVSISLNSKGGAKMLNFTKRAVGKPMAVVFIEYKATGERDANDKLIFEAKRNVISVATINGVFSNQFETTGLDSPKEAHDLALLLRAGALIAPVQIIEERTVGPSLGQENIDLGMQAIIWGFVAVLVFMLVYYKKFGFVANIALTLNLVMIVGIMSMIPGATLSLPGMAGIVLTVGMAVDANVLIFERIREELAEGRSPQQAIHHGYDSAFSTILDANITTFLVGLILFAIGTGPIKGFSITLMIGIATSMFTAIIVTRAIVNAWWGGKRLTKLSI
>NZ_CP047023.1|WP_158967311.1|1320860_1321802_+|protein-translocase-subunit-SecF
MQILNMKETVSFMSLKTPAAILSIVLILGSIVSLAVNQLNWGLDFTGGTQIEVGYTQAADLDQIRTQLENSDFKDAVVQNFGSSQDVLIRLASREGVKPSELGDAALKVLREADATAEMRGSSYVSSSVGEELTEQGGLAMLVALLCILIYVALRFEWRFALGSVAALTHDVIITLGLFSVFQLEFDLTVLAAVLAVIGYSLNDTIVVCDRIRENFRKVRKSEAEEIINISLTQTLNRTIVTSLTTILVLLALFFLGGATIHGFATALLFGVVIGTYSSIYVASLVALTLGISKEDLMPTEIEKEGADQDAVL
>NZ_CP047023.1|WP_158967314.1|1321938_1324830_+|peptidase-M16
MGLSISCRLRYVFLFIISLLFIACTTTNYVAEESSKPIPQTSIVKSPNDNRQYDSIILDNQLEIVLVSDPSIEKSAVAISVAVGSFQEPKEFAGLAHYLEHMLFMGTKSYPEVGGYAEFVSLNGGVQNAYTELDHTNYMVAVNNDAFEQLLARFSGFFYEANLDPKYADKERHAVHSEWTMKSPNDWVILEQLNGLTLNPSHPIARFNWGNLASLKDSQTQSLQDALVQFYDTYYSANLMKGTLISALSISEMKTLARQYFSKIPNKNTDRPQIITPVIQPKHLNKIIHYVPQTDMRQLQIKFVIANNNDEFAVKPNGYVEYLLSNEMPGALASVLRDAGFSEAVYSSYDADKYLNAGDLTLYIDLTESGVNHRDEVMGAVWGYLTLLKQKGVDKKYFNEIKQSLNNSFRFKEKSNDYDYAMQIAANLQNVPVEYVLSSDYAYQRFEPSAIYRVLDQLDLSKARVLYIDKDQPVDKDMLFFEGQYSVSEMTPEILENWHQLAANYNLNLPRENKLMPSRFELQPAVLTGKPKQLIAEPGVSLHLAHSALFVEPKGLLFIAMNTGLSKKTARNQVLSNILKRGLMQQLTELQSEAYIAGMGLNLDIINGLSITVSGFTDQQMALIERCLQQVLAFTLTEQELANHIASIKSAIESSKKQILLDQLFPKYRKVLNLDNYSDSKILQEVDSITLEELVRFRDELLITANVNILAFGNYNEQQSKEVANLVLANLPVNRQFSSFYLSPELAVKAGQVFNWQEDINMSDVAMADTYLMPLKLADFAAAQVLNQIIQPALFEQIRTEEQLAYALGFFSQKINEQLLLGYYIQSPVKGLADIYERIKLFRANFVEDLINMPSSKFKQVKNSVLAELQQSAKNLTSEVVSVLEDWRQHNFDFDSKAKLVQELSKLQQEDVINLYRNIEADDTFGRLMLQLRGHNFATEKYVHFENSQSVTDVDKFHQDFAQ
>NZ_CP047023.1|WP_158967316.1|1324845_1326516_-|diguanylate-cyclase
MSTQSFEDKLKELRNLFIFTLPDNIASIITKWQQLQIQWDLENGKSCIFALHNLKGSSGTLGYDEISNAIGHCENLLKTIINNKTAPTDSDYLEINQQFLIIDKAKQALLIKGKQPTERHEINPPTVKFRPASPQTEDINVLIIDDVPSTGEVMKKQLTEFGFNTSLVPSLHAAKSHLQKAIVQLVIVNLVIADCTTNEVFNFIAECETNNIRTFIISEQDNFELRLAAVSANASNYILRPYQITNLVYKMRSALYLDLVRPFKVLLVDDQSSVASYFKSTLEQNNMEVKILLDGTKVLESLTEFEPDIFLLDLHMPKVNGIKLAKVIRLIEKYDSIPIVFLTSENTIQIKLDVLEVGCDDVISKNIPPDSLIKQIMSRLKRGKTLRYLNSRDSLTSLLNHGQIMEATENALQTGIRRGTSTIIVMVDLDHFKAVNDKYGHASGDKVLIGLSQLFLQHIRSTDYIGRYGGEEFLLVFPDSSLHAIQQKVENIRNILSTIQFKHEDINFNVTLSAGIACSDNFESSMPKILLAADKALYKAKESGRNNVQLATLPTI
>NZ_CP047023.1|WP_158967318.1|1326706_1327483_-|inositol-1-monophosphatase
MHPMLNIAVRAARVAGNIIAKGFENQTDLLTQAKGDNDYVTRIDKEAEQAIIHKIKQSFPDHCFVGEEGGVVEGTDKDYKWVIDPLDGTTNFIKGIPHFAVSIALLYKGRLDQAVVFDPIRGELFTASKGAGAQLNGFRIRSSKAKELSQTILATAFPFRDKAKFAQFQESFSNIFMQAGDIRRSGSAALDLAYVASGRYDGYWEQGLKPWDIAAGELLVRESGGLVTDFSGGNDPMHKGEIVAGSPKIVQTLVKHLK
>NZ_CP047023.1|WP_158967320.1|1327796_1328531_+|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ
MLENIRVVLVNTSHTGNIGSAARAMKTMGLSQLVLVDPISPPDGKSSALAAGAGDVLANAKTVATLAEAVADCGLVIGTSARSRTLSWPMLEPRECGEKLISEVPNFPVALVFGRENNGLSNEELQQCHFHVCIPANPDYSSLNLAAAVQTLCYEVRMAYLYATRHPQADEISENEYPLSEDLEGFYSHLEQTLVKTNFIVAKHPGMVMTKLRRLFNRARPESQELNILRGILASVDKISKQKD
>NZ_CP047023.1|WP_158967322.1|1328533_1329343_+|serine-O-acetyltransferase
MFETIKEDVKSVYHRDPAARNTFEILTNYPGLHAIWFHRVSHKLWKNNWYWLARSLSTFSRWLTGIEIHPGATIGRRFFIDHGMGVVIGETAEIGNDVTLYHGVTLGGTSWKAGKRHPTLEDNVVVGAGAKVLGPITMHKGAKVGSNSVVVRDVPEGATVIGIPGRVVVQTKKPDAPTNGHREKIAEKYGFDAYAVATDNPDPIAHAIGVMVDHVHLIDTKVEEMCKEINKMGGTVCGKSLPNLELDDFTDNEMVKDIQKASEAFDPHI
>NZ_CP047023.1|WP_158967324.1|1329446_1329935_+|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MKLTSKGRYAVTAMLDVSLHSQRGPVSLADISERQEISLSYLEQLFSRLRRENLVDSVRGPGGGYKLGREASEISIGEVIRAVNESVDATKCQGQGGCQGGERCLTHNLWEGLSERISVFLDGITLGELMKQHDVKTIANRQDKNKHLNHIASTDINISLQL

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Crispr_ID: NZ_CP047023_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047023_2

3985814-3985924

Orphan

Consensus_repeat	Method
AACCTTATCTGGACAGCCATCATAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP047023_2

>merge|NZ_CP047023|2|3985814-3985924|CRISPRCasFinder
AACCTTATCTGGACAGCCATCATAAGGGTGTACTTGAGCACATAACCTTATCTGGACAGCCATCATAATAACCTTATCTGGACAGCAACCTTATCTGGACCAACCTTATCT

>NZ_CP047023|2|2|3985814-3985924|CRISPRCasFinder
AACCTTATCTGGACAGCCATCATAA	GGGTGTACTTGAGCACAT
AACCTTATCTGGACAGCCATCATAA	TAACCTTATCTGGACAGC
AACCTTATCTGGACCAACCTTATCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047023.1\|WP_158971199.1\|3982022_3983000_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|365803
NZ_CP047023.1\|WP_158971213.1\|3989444_3989834_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP047023.1\|WP_158971228.1\|3998181_3998868_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047023.1\|WP_158971207.1\|3984891_3985326_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350250
NZ_CP047023.1\|WP_158971223.1\|3995712_3996618_+\|30S-ribosomal-protein-S6--L-glutamate-ligase	unknown	unknown	gnl\|CDD\|182468
NZ_CP047023.1\|WP_158971215.1\|3989888_3990968_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NZ_CP047023.1\|WP_158971201.1\|3983372_3983672_+\|type-II-toxin-antitoxin-system-HigB-family-toxin	unknown	unknown	gnl\|CDD\|227025
NZ_CP047023.1\|WP_158971225.1\|3996696_3998025_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|225803
NZ_CP047023.1\|WP_158971221.1\|3994362_3995427_-\|DUF21-domain-containing-protein	unknown	unknown	gnl\|CDD\|376571
NZ_CP047023.1\|WP_158971193.1\|3978508_3978676_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047023.1\|WP_158973063.1\|3993624_3994296_-\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|185044
NZ_CP047023.1\|WP_158971211.1\|3986417_3989336_-\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NZ_CP047023.1\|WP_158971219.1\|3992406_3993495_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|132060
NZ_CP047023.1\|WP_158971195.1\|3978858_3979107_+\|DUF2960-family-protein	unknown	unknown	gnl\|CDD\|371406
NZ_CP047023.1\|WP_158971205.1\|3984479_3984728_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047023.1\|WP_158971191.1\|3977162_3978080_-\|family-43-glycosylhydrolase	unknown	unknown	gnl\|CDD\|350106
NZ_CP047023.1\|WP_158971217.1\|3991141_3991990_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237907
NZ_CP047023.1\|WP_158971197.1\|3979637_3981998_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173793
NZ_CP047023.1\|WP_158971203.1\|3983682_3984051_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|227786
NZ_CP047023.1\|WP_158971209.1\|3985325_3985541_-\|AbrB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|198034

Protein	Function_ID	Function_description	E-value
NZ_CP047023.1\|WP_158971199.1\|3982022_3983000_-\|AAA-family-ATPase	gnl\|CDD\|365803	pfam00004, AAA, ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.	7.84167e-36
NZ_CP047023.1\|WP_158971213.1\|3989444_3989834_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	8.04469e-72
NZ_CP047023.1\|WP_158971207.1\|3984891_3985326_-\|PIN-domain-containing-protein	gnl\|CDD\|350250	cd18683, PIN_VapC-like, Uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.64013e-37
NZ_CP047023.1\|WP_158971223.1\|3995712_3996618_+\|30S-ribosomal-protein-S6--L-glutamate-ligase	gnl\|CDD\|182468	PRK10446, PRK10446, 30S ribosomal protein S6--L-glutamate ligase.	1.06526e-147
NZ_CP047023.1\|WP_158971201.1\|3983372_3983672_+\|type-II-toxin-antitoxin-system-HigB-family-toxin	gnl\|CDD\|227025	COG4680, COG4680, Uncharacterized protein conserved in bacteria [Function unknown].	4.85789e-34
NZ_CP047023.1\|WP_158971225.1\|3996696_3998025_-\|mechanosensitive-ion-channel	gnl\|CDD\|225803	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	8.33792e-62
NZ_CP047023.1\|WP_158971221.1\|3994362_3995427_-\|DUF21-domain-containing-protein	gnl\|CDD\|376571	pfam01595, DUF21, Domain of unknown function DUF21. This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Brachyspira hyodysenteriae hemolysin C that does not contain this domain. This domain is found in the N-terminus of the proteins adjacent to two intracellular CBS domains pfam00571.	1.37358e-34
NZ_CP047023.1\|WP_158971215.1\|3989888_3990968_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NZ_CP047023.1\|WP_158973063.1\|3993624_3994296_-\|hemolysin-III-family-protein	gnl\|CDD\|185044	PRK15087, PRK15087, hemolysin; Provisional.	1.85193e-67
NZ_CP047023.1\|WP_158971211.1\|3986417_3989336_-\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NZ_CP047023.1\|WP_158971219.1\|3992406_3993495_-\|AAA-family-ATPase	gnl\|CDD\|132060	TIGR03015, pepcterm_ATPase, putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. [Protein fate, Protein and peptide secretion and trafficking].	1.90662e-127
NZ_CP047023.1\|WP_158971195.1\|3978858_3979107_+\|DUF2960-family-protein	gnl\|CDD\|371406	pfam11173, DUF2960, Protein of unknown function (DUF2960). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	9.02446e-34
NZ_CP047023.1\|WP_158971191.1\|3977162_3978080_-\|family-43-glycosylhydrolase	gnl\|CDD\|350106	cd08992, GH117, Glycosyl hydrolase family 117 (GH117). This glycoside hydrolase 117 (GH117) family includes alpha-1,3-L-neoagarooligosaccharide hydrolase (EC 3.2.1.-); alpha-1,3-L-neoagarobiase/neoagarobiose hydrolase (NABH, EC 3.2.1.-). In the agarolytic pathway, in order to metabolize agar, NABH is an essential enzyme because it converts alpha-neoagarobiose (O-3,6-anhydro-alpha-l-galactopyranosyl-(1,3)-d-galactose) into fermentable monosaccharides (d-galactose and 3,6-anhydro-l-galactose). Thus, these enzymes have exo-alpha-1,3-(3,6-anhydro)-l-galactosidase activity, removing terminal non-reducing alpha-1,3-linked 3,6-anhydro-l-galactose residues from their neoagarose substrate. This family includes Zobellia galactanivorans enzymes, Zg4663 and Zg3615 (also known as ZgAhgA and ZgAhgB, respectively) that have been shown to have similar activity on unsubstituted agarose oligosaccharides while Zg3597 has been shown to be inactive, possibly due to differences in dimerization conformation, active-site structure and function. GH117 shares distant sequence similarity with families GH43 and GH32. A common structural feature of all these enzymes is a 5-bladed beta-propeller domain, similar to GH43, that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	6.44471e-98
NZ_CP047023.1\|WP_158971217.1\|3991141_3991990_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|237907	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional.	2.54061e-37
NZ_CP047023.1\|WP_158971197.1\|3979637_3981998_-\|S8-family-serine-peptidase	gnl\|CDD\|173793	cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	5.29005e-69
NZ_CP047023.1\|WP_158971203.1\|3983682_3984051_+\|DNA-binding-protein	gnl\|CDD\|227786	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription].	6.49661e-36
NZ_CP047023.1\|WP_158971209.1\|3985325_3985541_-\|AbrB-family-transcriptional-regulator	gnl\|CDD\|198034	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain. This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. AbrB is thought to interact directly with the transcription initiation regions of genes under its control. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator. DNA-binding activity in this AbrB homologue requires hexamerisation. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins.	0.00526624

>NZ_CP047023.1|WP_158971209.1|3985325_3985541_-|AbrB-family-transcriptional-regulator
MKVSSKRQITLPIDQCVVAHINQGDEVESFVDRQGIISIVKKSMGAASGILSGIAVNVDITEEESLQSSVR
>NZ_CP047023.1|WP_158971207.1|3984891_3985326_-|PIN-domain-containing-protein
MIAIDTNVLLRYLINDDQEQAEKSQKLINGNQKVLITDVVITETIWVLTGKRYQLPKDKIVDVIHALFAEKNIQFEDPQAVWCALKDFVNAPPIKVKGKTKQADFPDALIINKAKRYGQINKIKVEPIYTFDKAAQEIEGTKEP
>NZ_CP047023.1|WP_158971205.1|3984479_3984728_+|hypothetical-protein
MGADHQGCVIYQVKFFLDCRFDKKANYFMEKEFVWSAAFYKVRPVLCPTGNLADVQNGSRPFCLVTLSWLLKKESLARRDSS
>NZ_CP047023.1|WP_158971203.1|3983682_3984051_+|DNA-binding-protein
MNIKPIKNQQDYELAMVTIEKLWDAPPGSAEADELDILATLVESYEKQQFKIEAPDPVAAIKFRMEQQGLSDADLVPLLGQRSRVSEVLNKKRKLSISMIRNLHHQLKIPLESLISDYHLAK
>NZ_CP047023.1|WP_158971201.1|3983372_3983672_+|type-II-toxin-antitoxin-system-HigB-family-toxin
MRIIARARLRNFWLNPKYSDAEQPLKAWFDEVKNEVWKSTQDIKNKYRNASFIANNRVVFNIHGNKYRLIVAVRYDISIVFIKFIGTHKQYDDIDASSI
>NZ_CP047023.1|WP_158971199.1|3982022_3983000_-|AAA-family-ATPase
MASGKLLRLLVQSGASGDPTAFRSATEQLIKEERQKQHNLLANDLERILYGDRSSPSATAHNILPEAPCDKESGVALIDIKQANRSIDELVLAQNTLEVIENVLEEYRREDILRSYGMMPAEKVLFFGPPGCGKTLSAEAIAYELNRPLAIVRLDSLVSSFLGETAANLRKIFDFITKHRLVVLFDEFDALGKERDDGSEHGELRRVVNAVLQMMDSYDGKSIIIAATNHEQILDSAIWRRFDELVEFPLLNKDQLQNLLQLKLRGVRREFDLDSPELHSIFDDKSPAIIERIIRRAVKRMILKQKEFLTVKMLKHAFELENRVS
>NZ_CP047023.1|WP_158971197.1|3979637_3981998_-|S8-family-serine-peptidase
MAGVYPHLSFSKEVPLTPRRSRNGFGSKIKCDNPKEHGRNLQKQVVSFQESISSQVGGNASRNIIQIKLSEKMSFEDITKHGISIIGQQDETVYLAFADEQQLNEFNSRLSRLVDGEHVTYANLLFAIDKIDAWGAEERKSWGLQQFGYPKEEIFRLDVELWPIGDAGSVERNNLIVDFEAWLNSSAIQKLDKVNRDSLVMFRVTVNIEKAESLLNHKDIRQVDLPPRTGVEFSQLNIDVNVLPPKLNELTDAASKICILDSGINANHILLQGAVGDAQSFIDGEDATDTVGHGTAVAGVALFGDLEERIEANEWTRELWLLSGKVLTQDEHGEPVFDEKTIETTLVNAITYFHDEYDCRIYNLSLGNLNAPYKHNHISGIAVTLDELARKLDILIVVSSGNYNGSDIINNWRDDYPSYLLSEDAALIDPAPAANVLTVGSIAKHTMTYAERRYQLQGEINDLHVANEGQISPFSRSSQSNKSALKPDLLAHGGNFAIPARREGQSWNQISKHLGVVTLNHNPQGNTLLSEFSGTSFSAPYIAHLAGRLLNNYPQASANLLRALLANQAYVTQEIASTFENKEHTRRVAGYGVVDEDSLFKSSEEHVVLITEEKIENDKHQFFEIPIPDDYFRKGKAIRTITASLAYSPSVRTTRLEYLATKMKFHLVNGDSLDSVAKAFNNENKTQINSISESDGSKRDITQDDRSRGTLQSSTWTYNQFGKPRKLFLVITRQDQPWAQNQVNDEESYALAISITDRENEEARLYQQISEKLQAREQVKQRAKIS
>NZ_CP047023.1|WP_158971195.1|3978858_3979107_+|DUF2960-family-protein
MAHKVRYKFNGVAKEISFSYSRYQNMHEAVADAEGLDLTQFLQTEQQVASISKDKATVRNFRDAEFIKMGFTELYFLKNGQE
>NZ_CP047023.1|WP_158971193.1|3978508_3978676_+|hypothetical-protein
MGVKATPTSLHSGNRYYRHSDSLTIVITVASTIVIPVAATIVIPVAATIVIPVCF
>NZ_CP047023.1|WP_158971191.1|3977162_3978080_-|family-43-glycosylhydrolase
MKPTVAKPINFSYQKTTGIGFDPAFNRRDNSDVVKVGNKYYIWYTRMNSPVTSGYWGTIWYATSEDEGFTWQEQGMALGLGDEGKFDSHSVFTPNILAHNGKYYMYYTGVQPTPGNVKKKFENNTVNDITGIGLAVADSPDGPFVRVENNPVLEISTVAEDFDSYRIDDASLLVVDDKIWLYYKGRSFSHGKRGPSLTQMGVAYANSPIGPFIKHPEPLLKKSHEVLIWKRDGGIASLASISKTVNFAKDGIHFSTLQQNLTDIPKAPGLYRPHLEDGNAANEVPGWGIAMVVKRGVSYLVRFEM
>NZ_CP047023.1|WP_158971211.1|3986417_3989336_-|aminomethyl-transferring-glycine-dehydrogenase
MSLTHFSLSELEQKQDFIRRHIGPSEAEMADMLSTIGASSLDDLMQQTVPENIRLAQPIKVGEAQTETQALVYLKNVAAKNKINRSFIGMGYHGTFTPNVILRNVLENPGWYTAYTPYQPEIAQGRLEALLNFQQATIDLTGMELASASLLDEATAAAEAMGLAKRVSKNRKANSFFVADDVHPQTLDVVQNRAEMFGFELVVGKAEEASQHDLFGALLQYPGTTGAVNDIEDIIQGLQANKAVVAVAADLLSLVLLKSPGELGADVVLGSAQRFGVPMGYGGPHAAFFATRDSYKRSLPGRIIGVSKDTRGKPALRMALQTREQHIRREKANSNICTAQVLLANMASFYAVYHGPDGLKTIASRIHRFTDILAAGLKQAGFELVNNTWFDTLSVKVSANKDRIVAAALGNNLNLRTDLDGVLGISLDETTSREDLQALYQAFVGANVELDISAFDQNIVDNGSQSIPAQLQRTSEFLTHKVFNSYHSETEMLRYIKSLEDKDLALNHSMISLGSCTMKLNATAEMLPVTWPEFGQLHPFAPLEQAQGYKQMIDELSEWLIEITGYDALSMQPNSGAQGEYAGLITIQKYHESKGEGHRNICLIPSSAHGTNPASAQMVSLKVVVVSCDKHGNVDLADLRKKAEEAGDNLSCAMITYPSTHGVYEETIKEMCDIVHEFGGQVYMDGANMNAQVGVTSPGSIGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFLPNHQVVGVENAGDSQVRQHGAVSAAPWGSASILPISYMYIKMMGGAGLKKATEVAILNANYVANKLSNHYPVLYRGRNDRVAHECIIDLRPLKEASGISEMDIAKRLNDYGFHAPTMSFPVAGTLMIEPTESEAKAELDRFIEAMVSIHGEIAKVTSGEWDAIDNPLHNAPHTLEDICDSEWNRSYDRKLAAYPVVAVARNKFWPSVNRIDDVWGDRNLQCSCAPIDSYIDEKN
>NZ_CP047023.1|WP_158971213.1|3989444_3989834_-|glycine-cleavage-system-protein-GcvH
MSNIPTDLRYASTHEWVRPDGDGIFTVGISEHAQELLGDMVFVELPEEGSEVATGDDVAVVESVKAASDVYAPITGEVLAINQELEDAPELVNSDPYGDGWLFKIKAEDPAEVEALLDAEGYEASIADE
>NZ_CP047023.1|WP_158971215.1|3989888_3990968_-|glycine-cleavage-system-aminomethyltransferase-GcvT
MPNKTVLHAKHLEAGAKMVDFHGWEMPINYGSQIEEHHAVRKDAGMFDVSHMTIVDVTGSEAQNYLRFLLANDVAKLKDKGKALYSGMLNQAGGVVDDLIVYYFDLTNYRLVVNSATREKDMAWLQQHAEGFDVLITERPEFAMIAVQGPNAKSKTAELFSAAQKEAVAGMKPFYGVQAEDLFIATTGYTGEAGYEIMVPSEDAADYWQKLLDVGVKPCGLGARDTLRLEAGMNLYGLDMDETISPLAANMAWTITWQPEDRDFVGRKALEQQKSQGTDILVGLVMTDKGVLRAGQKVKVAGGEGVITSGTFSPTLGHSIAMARIPACEDQSAEVEIRKKWVTVKLVKPSFVRNGKSVL
>NZ_CP047023.1|WP_158971217.1|3991141_3991990_+|LysR-family-transcriptional-regulator
MKQLSLDNLRTFVTVVDLGGYAKAGDILGRSQPAISLQIKRIEQQLAAPLFSKQGQRHVVNNDGLKLYKTAREMLALNDGIFAQFQPSGLKGRIRLGIPSEFATTLLPSIVGQFGKLYPEVSLEVTSALSKNLLSAENNNQFDLVMALIDPQAEVEGQLLLHDDLVWVGDNSVPANLEQIALVLAPEGCMYRTRVINTLKQQTQQWRISYTNADLTGITAAIKQGLGISALAKSSVPEQLDIIKHKHLPSLGTIKICLFTGNTPHPQACAKLAEFIRSKLQA
>NZ_CP047023.1|WP_158971219.1|3992406_3993495_-|AAA-family-ATPase
MYETYYGLNSKPFQLTPDPSFFYGSKWHKRAMSYLQYGLSQAEGFIVITGDIGTGKTTIANSLLDQMQQDIVAAQIVSPKLTPDELVKMVANKFNVPAKGSTKADILNDLEAYLMSLHNQGKRALLIVDEAQNLPLETIEELRMLSNFQAGGKPLLQSFLLGQEELQPILRAPNMEQFRQRIVASCHLAPLTEIECKAYIEYRMTHAGWDGKELFSQQAFDKIYQFTHGVPRRINTLMDRILLYGFLEELTALDGEAIDNVIKEVSEEMFRPETAAQTETPAHTQTETQSSASLDPPKQVTGILDLPVAEGQIKDVEYYKTMLTELVDALDNALSQKIKLTRYIDKLLQKKYKTYVRLKSDD
>NZ_CP047023.1|WP_158973063.1|3993624_3994296_-|hemolysin-III-family-protein
MYHLATFYVPSCRKLSSIAQPYSNTEEWLNATSHALGFIAAFIGLVFLLLRVDGWYPQLVCSVFGVSMMAMFLSSAAYHGVSQPRLKAKLKIIDHSAIYILIAGTYTPLLLLSMGDPLSIAATVLIWLIAALGVGFKCFFHNRFPKLSLATYLLMGWLAIAFIYPLYNALTLQGFWLLLAGGVCYTVGVLFYVAKKVPFTHAIWHLFVGAGCACHYFAIYQNV
>NZ_CP047023.1|WP_158971221.1|3994362_3995427_-|DUF21-domain-containing-protein
MTYDIFIWIGIAFCVTQSAIFSGLNLAFFSLSRLQLEVEAKQGRTSAKTILAMREDSNFLLSTILWGNVSINVLLTLLSDSVLAGMYSFMFSTIVITFLGEIFPQAYFSRNALTVASKLTPIIKFYQILLFPVAKLTALILDGWLGREGITYFREKELTAIINAHIESEETDMEQVQGLGALNFLQVDKITVSQEGEPLDPNSVIKLPSKLDLPILPEVGSDDYAAFTQEVNRSGHKWVLLTDEQNTPLLMLDADGFIRATITEDGNKDPYAYCHRPLIIEDDQCSLGEAMKNLKLAHDLAPQSDEVLHADVILIWSEKQPRVITGADILGRLLKGIGSVESKETKENKQTKTD
>NZ_CP047023.1|WP_158971223.1|3995712_3996618_+|30S-ribosomal-protein-S6--L-glutamate-ligase
MKIGILSRNKNLYSTRRLKEVGIARGHDVDIIDTLHCYMDITSSKPLVRYKGNELPQYDAIIPRIGASISFYGTAVVRQFEMTGSFCVNESVAISRSRDKLRSMQLLSRKGIGLPRTGFANRPDNIKDLIKNVGGAPCVIKLLEGTQGIGVVLAETSKTAEAIVEAFMGLEANILIQEFIKEAGGADIRCFVVGDRVVAAMKRQGAEGEFRSNLHRGGSAVLIKLTKEERATAVAAANVMGLNVCGVDLLRAERGPVVMEVNSSPGLEGIERATEKDVAGLIYQFIEKNAKPNHTRTQGKG
>NZ_CP047023.1|WP_158971225.1|3996696_3998025_-|mechanosensitive-ion-channel
MNIQPISGLLTDLLQSIDQAMRDPSTYIQLCVLAAIYGLSFVIAYKIRHSIGITHNEPEDSAHPVRKLVFRIGGILFPLLAIMFLQVSTKAGQSLEYTPWLIETALAIAVLLFFNSLIRAFVQHHFAASLFRWVGLPILLLHLLNLLPTVISALEEISLTVGNVSVSAYGVFRVLIFGSFLFWLGRVSNNFGKAVIRKQASLDVPTKEVFSKLFEVGLFCIVILLLLNVMGVNLTTLAVFGGAVGVGLGLGLQSIASNFISGIIILLDRSLTVGDFVELDDGQKGFVREFRMRYAVLETYDGKDILVPNEKFISSLMINWTHKDPKQRYRIDFSVPYATDIRTMVEFIKEAVAEHPMVISGLDVPFEERPDCEIDSFGDSGVNMFVEFWMIGIDDGKNRVGGDLLLIVFETLRAHGIEIPFPQREVRILNPEEQEVNTKPNK
>NZ_CP047023.1|WP_158971228.1|3998181_3998868_+|hypothetical-protein
MSHKSIIVCLYLFFVNAQLTFVVHAQELDFGFDSKYISEGRHNLQKGGIGWLQLSHQLSQSISVIGLYGEASDYNELNLSVLYSNSYAEMNYYFSLTHLEFMRDNLNDTELGFGASYAVTEPITIALDSVYSREAEGGFIEFSVSYLAQINTYISLAPYAKAGLDYGYASDIKEGYNHTAVGIVTAFLASRDVSFNLTFEHNISAEHVKQETEKRHQTWLGLHLVYLF

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Crispr_ID: NZ_CP047023_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047023_3

4479978-4480190

Orphan

Consensus_repeat	Method
ATTCGCTTCGCGAACCAAGCATGGCTTCGCCATAAAGCATGTGCTTCGCACACT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP047023_3

>merge|NZ_CP047023|3|4479978-4480190|PILER-CR
AAGCATGGCTTCGCCATAAAGCATGTGCTTCGCACACAAGGCATGAGCTTTGCTCACAAGGCATGGCTTCGCCATAAGGCATTCGCTTCGCGAACCAAGCATGGCTTCGCCATAAAGCATGTGCTTCGCACACTGAGCATCGCTGCGCGATAAGGCATTCGCTTCGCGAACCAAGCATGGCTTCGCCATAAAGCATGTGCTGCGCACACTAAG

>NZ_CP047023|3|1|4479978-4480190|PILER-CR
AAGCATGGCTTCGCCATAAAGCATGTGCTTCGCACACAAGGCATGAGCTTTGCTCAC	AAGGCATGGCTTCGCCATAAGGCATTCGCTTCGCGAACCAAGC
ATGGCTTCGCCATAAAGCATGTGCTTCGCACACTGAGCATCGCTGCGCGATAAGGCA	TTCGCTTCGCGAACCAAGCATG
GCTTCGCCATAAAGCATGTGCTGCGCACACTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047023.1\|WP_158971942.1\|4481671_4482553_+\|nucleotidyltransferase	unknown	unknown	gnl\|CDD\|375587
NZ_CP047023.1\|WP_158971929.1\|4470182_4471235_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|213811
NZ_CP047023.1\|WP_158971948.1\|4484454_4484973_+\|DUF2975-domain-containing-protein	unknown	unknown	gnl\|CDD\|378586
NZ_CP047023.1\|WP_158971938.1\|4478146_4479958_+\|allophanate-hydrolase	unknown	unknown	gnl\|CDD\|236177
NZ_CP047023.1\|WP_158971952.1\|4485504_4486272_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|225130
NZ_CP047023.1\|WP_158971936.1\|4474483_4478137_+\|urea-carboxylase	unknown	unknown	gnl\|CDD\|274264
NZ_CP047023.1\|WP_158971946.1\|4483151_4483817_+\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
NZ_CP047023.1\|WP_158971924.1\|4465363_4467127_+\|TIGR03545-family-protein	unknown	unknown	gnl\|CDD\|274640
NZ_CP047023.1\|WP_158971928.1\|4468912_4469809_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP047023.1\|WP_158971940.1\|4481240_4481585_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047023.1\|WP_158971932.1\|4472966_4473710_+\|DUF1989-domain-containing-protein	unknown	unknown	gnl\|CDD\|163257
NZ_CP047023.1\|WP_158971950.1\|4484981_4485197_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226181
NZ_CP047023.1\|WP_158971944.1\|4482530_4483106_+\|SLATT-domain-containing-protein	unknown	unknown	gnl\|CDD\|380134
NZ_CP047023.1\|WP_158971930.1\|4471331_4472156_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223673
NZ_CP047023.1\|WP_158971956.1\|4486917_4487553_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047023.1\|WP_158971934.1\|4473739_4474387_+\|DUF1989-domain-containing-protein	unknown	unknown	gnl\|CDD\|132465
NZ_CP047023.1\|WP_158971926.1\|4467136_4468795_+\|response-regulator	unknown	unknown	gnl\|CDD\|381089
NZ_CP047023.1\|WP_158971954.1\|4486337_4486670_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133398
NZ_CP047023.1\|WP_158971931.1\|4472194_4472965_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213260
NZ_CP047023.1\|WP_158971958.1\|4488133_4488919_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132

Protein	Function_ID	Function_description	E-value
NZ_CP047023.1\|WP_158971942.1\|4481671_4482553_+\|nucleotidyltransferase	gnl\|CDD\|375587	pfam18144, SMODS, Second Messenger Oligonucleotide or Dinucleotide Synthetase domain. Nucleotide synthetase enzyme of the DNA polymerase beta superfamily. Experimental studies have demonstrated cGAMP synthetase activity in the Vibrio cholerae DncV protein, a member of the SMODS family. The diversity inherent to the SMODS family suggests members of the family could generate a range of nucleotides, cyclic and/or linear. The nucleotide second messengers generated by the SMODS domains are predicted to activate effectors in a class of conflict systems reliant on the production and sensing of the nucleotide second messengers.	4.04658e-54
NZ_CP047023.1\|WP_158971929.1\|4470182_4471235_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|213811	TIGR03427, ABC_peri_uca, ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived. [Transport and binding proteins, Unknown substrate].	0
NZ_CP047023.1\|WP_158971948.1\|4484454_4484973_+\|DUF2975-domain-containing-protein	gnl\|CDD\|378586	pfam11188, DUF2975, Protein of unknown function (DUF2975). This family of bacterial proteins have no known function. These proteins are likely to be integral membrane proteins. The proteins contain a highly conserved glutamic acid close to their C-terminus.	0.00392463
NZ_CP047023.1\|WP_158971938.1\|4478146_4479958_+\|allophanate-hydrolase	gnl\|CDD\|236177	PRK08186, PRK08186, allophanate hydrolase; Provisional.	0
NZ_CP047023.1\|WP_158971952.1\|4485504_4486272_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|225130	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only].	2.10321e-17
NZ_CP047023.1\|WP_158971936.1\|4474483_4478137_+\|urea-carboxylase	gnl\|CDD\|274264	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NZ_CP047023.1\|WP_158971946.1\|4483151_4483817_+\|TIR-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	4.62353e-15
NZ_CP047023.1\|WP_158971924.1\|4465363_4467127_+\|TIGR03545-family-protein	gnl\|CDD\|274640	TIGR03545, TIGR03545, TIGR03545 family protein. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.	2.5685e-129
NZ_CP047023.1\|WP_158971928.1\|4468912_4469809_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.53564e-38
NZ_CP047023.1\|WP_158971932.1\|4472966_4473710_+\|DUF1989-domain-containing-protein	gnl\|CDD\|163257	TIGR03425, urea_degr_2, urea carboxylase-associated protein 2. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.	2.95716e-131
NZ_CP047023.1\|WP_158971950.1\|4484981_4485197_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|226181	COG3655, COG3655, Predicted transcriptional regulator [Transcription].	5.61271e-29
NZ_CP047023.1\|WP_158971944.1\|4482530_4483106_+\|SLATT-domain-containing-protein	gnl\|CDD\|380134	pfam18186, SLATT_4, SMODS and SLOG-associating 2TM effector domain family 4. The SLATT domain contains two transmembrane helices. SLATT domains are generally predicted to function as pore-forming effectors in a class of conflict systems which are reliant on the production of second messenger nucleotide or nucleotide derivatives. SLATT domains are predicted to initiate cell suicide responses upon their activation. This SLATT family is often coupled to the SMODS nucleotide synthetase and is sometimes further embedded in other conflict systems like CRISPR/Cas or R-M systems.	6.07291e-84
NZ_CP047023.1\|WP_158971930.1\|4471331_4472156_+\|ABC-transporter-permease-subunit	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	8.40198e-49
NZ_CP047023.1\|WP_158971934.1\|4473739_4474387_+\|DUF1989-domain-containing-protein	gnl\|CDD\|132465	TIGR03424, urea_degr_1, urea carboxylase-associated protein 1. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.	2.86157e-130
NZ_CP047023.1\|WP_158971926.1\|4467136_4468795_+\|response-regulator	gnl\|CDD\|381089	cd17534, REC_DC-like, phosphoacceptor receiver (REC) domain of modulated diguanylate cyclase and similar domains. This groups includes a modulated diguanylate cyclase containing a PAS sensor domain from Desulfovibrio desulfuricans G20. Members of this group contain N-terminal REC domains and various output domains including the GGDEF, histidine kinase, and helix-turn-helix (HTH) DNA binding domains. Also included in this family is Mycobacterium tuberculosis PdtaR, a transcriptional antiterminator that contains a REC domain and an ANTAR RNA-binding output domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	4.17212e-15
NZ_CP047023.1\|WP_158971954.1\|4486337_4486670_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133398	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	1.53687e-26
NZ_CP047023.1\|WP_158971931.1\|4472194_4472965_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.99833e-97
NZ_CP047023.1\|WP_158971958.1\|4488133_4488919_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	1.7467e-19

>NZ_CP047023.1|WP_158971938.1|4478146_4479958_+|allophanate-hydrolase
MKLPINLSPPLNLTIRALQQSYKNGDFNPSTLITELLAEAKNYPESWIHILSAAEVAPYVKALENKTPEECPLWGVPFAIKDNIDLAGIPTTAACPEFSYVAEKSAYVVQQLIEAGAIPLGKTNLDQFATGLVGTRSPYGAAPNSFDPDYISGGSSSGSSIATAVGLVSFALGTDTAGSGRVPACFNNLVGLKPSKGLLSTTGVVPACRSLDCVSIFSLTAEDAQTVFSVAANFDSTDGFARPNPISNQGAVNYPAKFTFAVPLPRQLAFFGSDDYQQGYLDAIKQLEAIGGSKVEVDFAPLLDAAKLLYEGPWVAERYVATQDIITNKPEAMMDVTRTIISAGEKPKATDTFNALYKLQDLKQLADKLMAGVDVFMSPTAGRHFTLAEIAEEPILRNSQLGYYTNFMNLLDFAAIAVPMSFTQADMPFGVTLFSPAMTDQKLLTLASRLRQHNQLPLGATQLPYQTQATSLAPSKGYIDIVVAGVHLSDMPLNWQLTDRGAIFKSTAKTAAKYKMYAVAGKVERPALIRTKGNGSTFEVEVWSMPISEFGSFVQGIAAPLGIGQVELETGEILTGFIAEGYAAEIGTDISEFSGWRGYCAAR
>NZ_CP047023.1|WP_158971936.1|4474483_4478137_+|urea-carboxylase
MFKTVLIANRGAIACRIIRTLKKLGIKSIAVYAEADRESLHVRQADQAFSLGQGSASQTYLDQQKIIDIAKQTGADAIHPGYGFLSENADFSEKLQSHGITFIGPRPQQMIDFGLKHQARDLAEQAGVPLVPGSGLLADLAEVVSFAEQVGYPVMLKSTAGGGGIGMQRCDDKSQLEKAFTNVKYLGAQNFSNDGVFLEKFVQQARHIEVQVVGNGAGQVVTLGERDCSSQRRNQKVVEETPAPNLSDEIRQQMYATAKQLMASINYLNAGTVEYIFDQQSQQFYFLEVNTRLQVEHGITELCFDVDLVEWMLKIAYDDTMAKQESLTATDLSAIDNLVSQGHAIQARIYAENPAKNFQPSSGLLTQVEWPEQHFTSTDTLRIDHWIEAGIEVSPFFDPMLAKVQVKAENRQQAIEQLDNALTNSHLYGIITNIDYVRDILQTELFADGKIFTRSLDNIHASFAGFEVIKPGTMTTIQDYPARSGYWNIGVPPSGPFDFYSFNLANRLLGNTQDAAGLEITIQGPSLLFHQASQVIVCGADIDIKLDEQSYAMNQVINIAAGQTLKIGSVKDAGARAYLAISGGIQCPEYLGSKSTFTLGQFGGHCGRALRTGDFIQLIDNQAKHITFSLPASEELAAKIEHTWSLRVMSGPHGAPDFFTDKDIETIHQHEWEVHYNSSRTGIRLIGPKPEWARESGGEAGLHPSNIHDNAYAFGTVDFTGDMPVILGPDGPSLGGFVCPFTVISADLWKLGQFKGGDKVRFEIVDLAAAQQVEQAQNKQLQALTPQACDYQAVPISSPILDTLVTEDGEPDLVFRQAGDKFLLVEYGELVLDLALRARVQALLTSVEAECIDGVLELTPGIRSLQVHFDNQIVTAGKLIAKLKALDKALGDTSQLEFASRIVHLPLSWDDEACQLAIDKYIQSVRKDAPWCPSNIDFIKRINGLTDIQQVQDIVFEASYLVLGLGDVYLGAPVATPLNPCHRLVTTKYNPARTWTAENSVGIGGAYMCVYGMEGPGGYQFVGRTAQMWNRYRQTEVFENPWLLRFFDQIRFYPVSHDELEQIRADFPIGKWQPKIEQSSISMPELALEWSKQQRDIDKFVEQRERAFEQEMNDWKANGQLVYQADNTMDTELDELELAEGEFIIESTAAGSVWLIETAEGNTIAENDSLIILESMKMEIGITSPEAAIVKKILVETGQQVQAGQALLVLATHTTED
>NZ_CP047023.1|WP_158971934.1|4473739_4474387_+|DUF1989-domain-containing-protein
MILASQLQAEDAVIRDIVDAGDYYLKVVKQGQTVRILDIEGNQAADTLFYNANDISERYSAIDTIREQGNVYLTAGSVLMTNDCNPLLKIVADTCGRHDTLGGACATESNTVRYQLEKKCMHACRDSWLLAIAENEELGMDKSDITHNINFFMNVPITAEGKLSFADGISGAGKYVELEALMDTIMLISNCPQLNNPCNAYNPTPVEVLIWDQAK
>NZ_CP047023.1|WP_158971932.1|4472966_4473710_+|DUF1989-domain-containing-protein
MSQSNTQDLQQPILYQDTLPGGKHWSMRMRRGTSLRLIDKEGGANLGMLFYNPENLLERYNAPDTLKGQHTFKLTKGHCLYSDMGRIFCSITEDTLGWHDTVCGNSNRKIVDAQWGEKDYQKDRNNWLQNGNDAFLIEATKYGLSKRDLAANLNLFSCIAPDDEGNLTYQTNHSQAGDSVELRFEMDTIVLLHTCPHPLNPATDYPFKPVEYQIFKSAEIGEDDLCKNACAENQRGFENNRLYHLGL
>NZ_CP047023.1|WP_158971931.1|4472194_4472965_+|ATP-binding-cassette-domain-containing-protein
MSFISIKNVWKSYDDNLVLERLNLEVEQGEFVSMVGASGCGKSTFLNMLLGREQPSKGSIVLDGKTLNDEPDADRGIVFQKYSVFPHLTVLQNVMIADEFSQAKVLGWTFGNTKKQIKEKALDFIQAVGLSPAIAKYPHELSGGMQQRLAIAQALMKAPKVLLLDEPFGALDPGIRGDMHELIHDIWQKNKLTIFMVTHDIKEGFELGSRLWVFDKLRDDPQAPNAYGAQVTFDLPLASRGNKEDVNKMIEKVRHK
>NZ_CP047023.1|WP_158971930.1|4471331_4472156_+|ABC-transporter-permease-subunit
MKKIMNIVPSKPLNIFLSLLPFIIIFFVYWSASADRLVENPNDKLLPSFSQIYSAVDRLAFTENKRTGEYLFWQDTSASLYRLSIGICISALSGLLIGILTGLIPVARSGLSPLITVLSLIPPMAILPILFISFGLGELAKVMLIIIGTAPVMMRDMQSHVRQLPAEQLIKAQTLGASTWLVSLRVILPQILPRLLASMRLSLGAAWLFLIAAEAIAAQEGLGYRIFLVRRYMSMDVIFPYVIWITLLAFLMDYLLRKTSEKAFPWYHSIESSK
>NZ_CP047023.1|WP_158971929.1|4470182_4471235_+|ABC-transporter-substrate-binding-protein
MKKFKTARLFKTALLTLTLLASANSFAKDKFSVCWSIYVGWMPWEYGDSSGIVKKWADKYDIEIDVVQINDYIESINQYTAGEFDACTMTNMDALTIPSASFVDSTALVVGDFSNGNDGVVLKDKSSLKDIKGQQINLVELSVSHYLLARALETVGLQERDVKVVNTSDADLVAAYTTDDVTSVVTWNPLLSEIEKMPKTTKVFDSSMIPGEIIDLLVVNSDTLKANPKLGKALVGAWYEIMSKMQGNNTVLTEMAVASGTDLAGYNAQLATTKMFYTPAEAVKFTNSAQLPKTMEYVAKFSFDHGLLGDGAADAGFIGIETPAGIVGDKNNIQLRFDPSFMQMAADGKL
>NZ_CP047023.1|WP_158971928.1|4468912_4469809_+|LysR-family-transcriptional-regulator
MRHLQDYYFFKTIAETGSIRKAAKSLTITSTALNRRILALEKELGTEVFERLPKGVELSAAGEVFLHHVREQLTDIEKVKSQIADLRGERRGHISIACSQALLPFFLPNQINQYSNLHPHVTFNVQRRDRKAAEQELINMNADIAVVFEPVLLADFHILSVSKQPTYAIVSKDHELAGKDIIKLSECLEYPLALPTKEYGLRRILDKKADRAFYKLKPAIESDSFEFLRYKASLGKYITFQIEVGLPEDLSFMNMTAIKVDENDLPPGEVYVGQLKGRTLPVAAAKFAQQLVTTLESG
>NZ_CP047023.1|WP_158971926.1|4467136_4468795_+|response-regulator
MLFNKIKVAVVEDNGMARANLRNHLLDMGFSQIGCFSNGREFKAHIRHHKVDLVLMDFHLGQNKNGVEVLQELQQQGYLTRATCVMFVTSDRLPMIIGQIVDVHPEALVIKPYTISNMIKNISSCLTMHNFLLPIYRLMDEDNFAQALAVLDILLEQHHIGRKRSSLIKLRARILTKLERYSEAAIHYKEILRRSNKVIWAKWGLVQNLFLDGHVEESEALLHELTESQLTNDKACEWLARISVGNNQYNKAENYMQQIREGELSIPAARLKAYIYQAQERGKEAISLLEKKRESNRSIRERYDEISLDLARCYLSEAELKHNSERTSDLQVAKYLIGAAGRKVSDPSLSQKKDYLLATAAFLEGKIDKSNEILSRDGMEDLHEAEISTITDAIHAWRNVGNTEKAKECLALSKEKLKNIDEGNTKTTANMLVIKSEEAIGERRPEAVKFNKSGLEKFADKQYKAASADFYQAYMLFPREMAFSLNLLQSMVDASLVEYKTVNTLEFLAEMQNRELNTSNTKRLEQIVERIVKKADIYVFSSDEEASGITKK
>NZ_CP047023.1|WP_158971924.1|4465363_4467127_+|TIGR03545-family-protein
MKSIIRWPGLVAFVVIVGLIAAISILFLDFWIKIAAEKSFSELNGAEVNISQVEHKFSPFGITLHQVEFTDPKEPINNHFSAETISAKIDLAPLLLRKIIIDELTVNNSQFNTERASAGEVYLDTETADNESSTGFVDGIKVPTVDEILAKSPLKTTKAVADSQAVIEKHSPLLKQQFAALPEKDKLAEYKQRVNALKEMDHKDPAQLLAAKEQFNQLKDDILKDKKALEDFKQALSEAKKELSPQLAKLKSAPAEDYQQLKSVAAGDLDAIDDVTSLVFGESVGKWSRYALTAFDLVGPMLASKGEQDKAEQVATGKWISFSDTSALPDFWIKKANISLQWQQEIIESHWSDITHQHDVLGRPTIFSVDSSASSLWQSLKLNGDLWLAESGAKAKQKWALSGLKLSDLDLVKQDKLSGHLNKGLLSSTGDLSLNGEMLAGSGLVDLQDLVIEAVGSNKLTTIVANTLNQLSQLKLNTDIGGTLGDMDLSFSSDLNQQLSSALVANVTPEQQAKLDDLKQKLNEKTSGLLGDNNAEMSQWLEWEKLADGDIDSLNTLLEAQLNNVIDKQKDKVKDKAKEKILNKIFG
>NZ_CP047023.1|WP_158971940.1|4481240_4481585_+|hypothetical-protein
MVTKYQVRVKKIVKIRLLIGLFVIGTVLAFVGQWLNSFEGYEVKNTFYFSTTVLNSPLGTRRHDIYIRNPDGEIVPLNSFQPLSKNQEVCVSVVNGGRNGKTIKYSVVKSNHCT
>NZ_CP047023.1|WP_158971942.1|4481671_4482553_+|nucleotidyltransferase
MSISDKFSNFCTALRMSDTTVSNVRYRAKQITKRINSDFRGIDSDIRYSLVVGSYGRGTDIHVSDIDMIVELPYTEYEKYDKYNGNGQSALIQAVKESIKKTYSTTHVSGDGQVVKLNFKDGICYEIVPGFINKDGSSYTYPDSNSGGSWKVTKPREEISAITTANNSWNKNLKRLCRMARAWKDKWDVPMGGLLIDTLGYNFLKQWEYKDKSFIYYDWMTRDFFEYLKNQDSDKNYWLAPGSSQYVSRKGAFEYKALRCYNITKEALQFEADEMPYSANQKWREIYGTKFPS
>NZ_CP047023.1|WP_158971944.1|4482530_4483106_+|SLATT-domain-containing-protein
MEQNSLPNVLEEQLRECFGRVAWSHKTHEKCSDILNTRLNRIKLWQIILSAITTTGIIAAVFGESKEIGIFSAALSFVLTVLNTYVKQYDLGGLAQKHSDAAVDLWNMRESYLSLLTDIRSGCVESDEIRKHRDDLQESLLEIYRGSPRTIAKAYKEATKALKKLEELTFSDAEIDAILPKALRKSENNAL
>NZ_CP047023.1|WP_158971946.1|4483151_4483817_+|TIR-domain-containing-protein
MTTKSKISIFISYSWSDTKIADEIESDLSQFQLNLVRDVRDIEYKSSITSFMEKIRDTDFAILLVSEDYLKSKNCLKEVIHLLKEKEYKHKILPIIVGNPSIYNAEGRVLHTRHWLEEKNKLEKLINSLPATAIINEIQELKVLESISSNINEFLSYISDIKNVTFSELKGESYKSLIESIGGINVEHLVKLLQISLNPNIDEKEIQIDDWFDSNTSSSRT
>NZ_CP047023.1|WP_158971948.1|4484454_4484973_+|DUF2975-domain-containing-protein
MSSHNQQALYQKISKVCGVCIPVIYFLIALMIFAVFAIPTLIFFTDGMFTLNGSNEIDLASISSVTKVILAISSFILIGIGFRILWLILNIVQRFKQQEIFSQKNANLANSVAFLMLMAFIGEFILNIYLTVITGNLKLSIPENLATLVFVYVSAWILSIGSQLKAENDLTV
>NZ_CP047023.1|WP_158971950.1|4484981_4485197_+|helix-turn-helix-domain-containing-protein
MPIIVNLDVMLAKRKMRSNELAARIGITAQNLSILKAGRAKAVRFETLEKICEALDCQPGDLLEFSKKDNQ
>NZ_CP047023.1|WP_158971952.1|4485504_4486272_-|MBL-fold-metallo-hydrolase
MKITQIRNATIVIEVKGACILVDPMLSKKSTLPKLRYYKSNLRNPLVELPEAFYKLKARIDYALITHCQKGHFDHLDRAGVHWLKKNKITTFCTYHDSTYLNKKGIHTSVLKEKCGSFFDGTINQIPAKHTSGWLTPFMEHGVGYYIKLKNEPSLYLMGDTILTDEIRRFIRDNQPDYIVAPTGKAQFDIGAPLLLNETEIVELASISKGLIIGNHMEALDHCRISRKGLTAILKDHNLTKQFIIPNDGETVDLT
>NZ_CP047023.1|WP_158971954.1|4486337_4486670_+|MerR-family-transcriptional-regulator
MKISELEKKVGLSRDTLRYYEKVGVLTPPLRADNGYRHYGKTQLDELAFIERGKAIGFTLSEIKRGYEQYKTLGKLCPEFIKQLQEKKEMFNKRISKDCVAIAEIDKMLE
>NZ_CP047023.1|WP_158971956.1|4486917_4487553_-|hypothetical-protein
MINYIYKFTLLILVIAVGFGFLSFYKVNEYTAAIADGTKLTCSDFQKGITKYKGECWECPTGFSNHLAKMAGDPSNPKHCRKAKNYIKAERHSEPTGLLNITCKSKEVWYKNKACWTCPAGYKPARIKENKGNPQCKPKVKYIYKAANKIGEKGCPDGSWAGTLTKKCYRCPEGYKRNILKTVIDSNPTNDPKACKGEVTLMESILQSSSE
>NZ_CP047023.1|WP_158971958.1|4488133_4488919_+|transporter-substrate-binding-domain-containing-protein
MKKKVQILLLFLFYALPIGVTAETLISYCRNYSPELFFKNGRCSGAVPDLATDIFAKLGHDIVWIQQPPLGRSVREAKQGKVDLLIMHSMTPERQIFLHPVEYASPTRVLFFYKSPKFTSDIDSYEALKKVTLGAIRNVFYSPSFSKLDSHRLVLVDKTEQLLAMLELGRIDVAVTSAYHYIELFDGRFNKVSLKDSFINPMYISISKRSKAAKYYAKVSAIMLDYRKSGKVDKYFKKYGMPAPPQIFEKTLKAIDGKSQR

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Crispr_ID: NZ_CP047023_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047023_4

4803318-4803428

Orphan

Consensus_repeat	Method
AAAAATGGTGCCGACTACCGGAGTCGAACTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047023_4

>merge|NZ_CP047023|4|4803318-4803428|CRISPRCasFinder
AAAAATGGTGCCGACTACCGGAGTCGAACTGCTATGAGGCTTAGCTACTGATTACAAGTCAGTTTGAGATGATCTGAAGAAAAAATGGTGCCGACTACCGGAGTCGAACTG

>NZ_CP047023|4|3|4803318-4803428|CRISPRCasFinder
AAAAATGGTGCCGACTACCGGAGTCGAACTG	CTATGAGGCTTAGCTACTGATTACAAGTCAGTTTGAGATGATCTGAAGA
AAAAATGGTGCCGACTACCGGAGTCGAACTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047023.1\|WP_158972445.1\|4811661_4813479_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP047023.1\|WP_158972432.1\|4801449_4801803_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|315923
NZ_CP047023.1\|WP_158972426.1\|4798073_4798823_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NZ_CP047023.1\|WP_158972440.1\|4807091_4807418_-\|thioredoxin-TrxA	unknown	unknown	gnl\|CDD\|181812
NZ_CP047023.1\|WP_158972419.1\|4789454_4790087_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047023.1\|WP_158972447.1\|4814496_4815936_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP047023.1\|WP_158972434.1\|4803616_4804756_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP047023.1\|WP_158972420.1\|4790129_4792148_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225177
NZ_CP047023.1\|WP_158972438.1\|4805510_4806776_-\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490
NZ_CP047023.1\|WP_158973100.1\|4801022_4801439_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|225949
NZ_CP047023.1\|WP_158972422.1\|4792205_4797302_+\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|378861
NZ_CP047023.1\|WP_158972424.1\|4797309_4797771_-\|YgjV-family-protein	unknown	unknown	gnl\|CDD\|378474
NZ_CP047023.1\|WP_158970245.1\|4801799_4802835_-\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP047023.1\|WP_158972442.1\|4807520_4808780_+\|ATP-dependent-RNA-helicase-RhlB	unknown	unknown	gnl\|CDD\|235314
NZ_CP047023.1\|WP_158972443.1\|4808776_4810291_+\|guanosine-5'-triphosphate,3'-diphosphate-pyrophosphatase	unknown	unknown	gnl\|CDD\|236826
NZ_CP047023.1\|WP_158972430.1\|4799617_4799926_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225495
NZ_CP047023.1\|WP_158972436.1\|4804766_4805255_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377
NZ_CP047023.1\|WP_158972444.1\|4810545_4811661_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|378436
NZ_CP047023.1\|WP_158972428.1\|4799250_4799616_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368831
NZ_CP047023.1\|WP_158972446.1\|4813498_4814494_-\|porphobilinogen-synthase	unknown	unknown	gnl\|CDD\|236450

Protein	Function_ID	Function_description	E-value
NZ_CP047023.1\|WP_158972445.1\|4811661_4813479_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	4.19032e-98
NZ_CP047023.1\|WP_158972432.1\|4801449_4801803_+\|hypothetical-protein	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.30361e-11
NZ_CP047023.1\|WP_158972426.1\|4798073_4798823_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.19598e-09
NZ_CP047023.1\|WP_158972440.1\|4807091_4807418_-\|thioredoxin-TrxA	gnl\|CDD\|181812	PRK09381, trxA, thioredoxin TrxA.	7.97717e-56
NZ_CP047023.1\|WP_158972447.1\|4814496_4815936_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	5.80533e-59
NZ_CP047023.1\|WP_158972434.1\|4803616_4804756_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	3.71108e-161
NZ_CP047023.1\|WP_158972420.1\|4790129_4792148_+\|hypothetical-protein	gnl\|CDD\|225177	COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown].	1.43499e-52
NZ_CP047023.1\|WP_158972438.1\|4805510_4806776_-\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
NZ_CP047023.1\|WP_158973100.1\|4801022_4801439_+\|IS630-family-transposase	gnl\|CDD\|225949	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.32038e-17
NZ_CP047023.1\|WP_158972422.1\|4792205_4797302_+\|AAA-domain-containing-protein	gnl\|CDD\|378861	pfam12458, DUF3686, ATPase involved in DNA repair. This domain family is found in bacteria, and is approximately 450 amino acids in length. There are two conserved sequence motifs: DVF and SPNGED.	0
NZ_CP047023.1\|WP_158972424.1\|4797309_4797771_-\|YgjV-family-protein	gnl\|CDD\|378474	pfam10688, Imp-YgjV, Bacterial inner membrane protein. This is a family of inner membrane proteins. Many of the members are YgjV protein.	3.23892e-39
NZ_CP047023.1\|WP_158970245.1\|4801799_4802835_-\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.45956e-23
NZ_CP047023.1\|WP_158972442.1\|4807520_4808780_+\|ATP-dependent-RNA-helicase-RhlB	gnl\|CDD\|235314	PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional.	0
NZ_CP047023.1\|WP_158972443.1\|4808776_4810291_+\|guanosine-5'-triphosphate,3'-diphosphate-pyrophosphatase	gnl\|CDD\|236826	PRK11031, PRK11031, guanosine-5'-triphosphate,3'-diphosphate diphosphatase.	0
NZ_CP047023.1\|WP_158972430.1\|4799617_4799926_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	3.04261e-32
NZ_CP047023.1\|WP_158972436.1\|4804766_4805255_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	2.3838e-80
NZ_CP047023.1\|WP_158972444.1\|4810545_4811661_+\|histidine-kinase	gnl\|CDD\|378436	pfam10442, FIST_C, FIST C domain. The FIST C domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids.	2.28822e-26
NZ_CP047023.1\|WP_158972428.1\|4799250_4799616_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368831	pfam06296, RelE, RelE toxin of RelE / RelB toxin-antitoxin system. RelE is a family of Gram-negative bacterial antitoxins of the RelE/RelB toxin-antitoxin system. Its cognate antitoxin is family RelB, pfam04221.	2.59812e-47
NZ_CP047023.1\|WP_158972446.1\|4813498_4814494_-\|porphobilinogen-synthase	gnl\|CDD\|236450	PRK09283, PRK09283, porphobilinogen synthase.	0

>NZ_CP047023.1|WP_158970245.1|4801799_4802835_-|IS630-family-transposase
MHSLKNIDFSTLIAKEKNARMRVRLMALSHIQQGVNRTQAARYLHVSRRMVNEWVKRFNQDGLDGLKEKPRSGRPCALSAEQLQTLKIYIESHAIKPDGGRLKGTLIIDYVKQEFDITYGLTNIYRLLHQLGFSWITSRSKHPKQSQEAQDEFKKLQIETIKLIPGHVTLDKVDIWFQDEARIGQQNTTTRLWANKGSRPRAVKQQQFEYAHLFGAVCPATGETEALITPVVNKDIMRQHLQLISNRTQLDRYAVVIMDGAGWHTDDIAHDLDNVSIIKLPPYSPELNPIEQVWQWLRQNELANQCFDSYEDIVIQCSRAWNNFISDKEKVIKLCARNWAQVGN
>NZ_CP047023.1|WP_158972432.1|4801449_4801803_+|hypothetical-protein
MIPGHVTLDKVDIWFQDEARIGQQNTTTRLWANKGSRPRAVKQQQFEYAHLFGAVCPATGETEALITPVVNKDIMRQHLELISKRTQPGRHALVIMDGAGWHTDDIAHDLDNTNHDN
>NZ_CP047023.1|WP_158973100.1|4801022_4801439_+|IS630-family-transposase
MRVRLMALSHIQQGVNRTQAARYLHVSRRMVNEWVKRFNQDGLDGLKEKPRSGRPCALSAEQLQTLKIYIESHAIKPDGGRLKGTLIIDYVKQEFGITYGLTNIYRLLHQLGFSWITSRSKHPKQSQEAQDEFKKTAD
>NZ_CP047023.1|WP_158972430.1|4799617_4799926_+|helix-turn-helix-domain-containing-protein
MNESILNAVHETAKDLHNSGVMDVQTMRDFDALCLPEIEQYEASHIKAIREEAKVSQRVFAAYLNTSASTVRQWEQGVKKPRGTSLKLLDLVAHKGLNALVY
>NZ_CP047023.1|WP_158972428.1|4799250_4799616_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MHLFKTKLFDKWASKEGLTDKALINAIEEMEDGLIDADLGGSVYKKRVPIEGKGKSSGLRTLLAFKVKNKAFFMYGFSKNDRGNINASELKALKKLAKELLGYSDKKLLDAIKTSAIKKVK
>NZ_CP047023.1|WP_158972426.1|4798073_4798823_+|transporter-substrate-binding-domain-containing-protein
MKPYLLAVYITLLMLSTSIANAETIRWVTESWQNYTNKDGSGLYNDILRSVFADHQLEVTYMPWKRTLLEVKNGTADITGATSFVSGYITSQHPILAAPISVLLNSNKISYKDITSLTNYNGVWPSPYKNEFFFGLNKALFNGFSVQDRETAYKLLVSGRADYFLDTKALHLAWLEKKATSPSETMKNYDFQMEDISQLDLYMIFTDNARGQRLKDIYDNGIDKLIQNDELRKLYEKYHFLEQIPDFQK
>NZ_CP047023.1|WP_158972424.1|4797309_4797771_-|YgjV-family-protein
MALIIGVSAFFQKDDQHLRYYLTVFTLCMAVHFFMLEQYTSTCLALLGSVRNFVSSRTKNVWAMSLFIFIAVSISISNIDSLVHILPSVAIIAGSWGLFREKGIAMRVYMSCGTVCWLSHNLIVGSMGGILIESIFLIANFKTMYSLYRESHV
>NZ_CP047023.1|WP_158972422.1|4792205_4797302_+|AAA-domain-containing-protein
MTDHTTTEHTNTGQNQVDQAVAEGGAYEVIRARLTEQASHLKQKVDKLNQARIAEFGQAKLEVLSRVRVRTENNCVARDIVPVGDNILFGYNVFIGLKKETSVSDVFGLFKLKQNNSVYELEPQDLADSFLADANFTKEFNELYVYYKEARLIQLKVQAQTLFAVFQIGRKIEDTRVFQWRINKDGDPTYIDNRGERALKNVPSHDFEWQKAGREQHETGQHPHINILDQVFVETIGGKLTIKVENNTEDGLGIYNEPVEDQTQSLADADIQYAQIGTLILLKIQPYREKQYRFLVFNTRTTQVNRIDAIGLACVSLPEDHGIIFPGGYYLQNGDTKSFPDEIEGLRFKRSIRSPNGEDVLYVFYEPESGLVGLYSYNLIRKELQNPIYAHGYSVFEDGTMVVFVAEDEATRVHPMQVWETPYFSSEHAAKQPSSDSFFSRIGNKELVRGISDLIAINRSVSNPNPSRNLYEDLIKTCRTMFDSYYWLGEPEVDGLGDVVKQITATSELVIDEFIKVEQIRLQADKALAQAEQKQTDVLATVKISDWQSPEQFVQCLTALRQQRGHLITLKDQRYINKERIAELDHQVTEQFEIVSSATVNFLAADQALQPYHDKIITLENGLAQVTLVVDIKPLIEELDGLSLGLDLLTEILNGLKVDDATVRTKILDDISEIYGKLNQVKAQGKKRRKELGSGESSAEFAAQFRLFSQSINSAIAMVDTPDKADEQLSRLMIQLEELESKFSEYDQFLSDIMDKREELHSVFESRKQSLLEDQQRRSQNLFSAAERILKGVSRRANSFNDADQLNTYFASDPMVMKIADLVAQLRELNDPVKADDLEAQLKAAKEQGIRSLRDKQDIFEDGGAIIKLGRHKFSVNSQNLDLTLLPREDGLYRHLVGTDYFEQLDNQQLNDLKPYWQQALVSENKDVSRIEYLASLIIRDAELQQNGHSIHALYQLVNDPKALLVLVRQYMADRYQEGYQKGVHDADTVKLLLAILPVHEKADLLRYAPTSRALAMLFWTFSHREKNQQKIWQSHAFSAELLAKSFNSRNGFVQLQDTLFEKICQFCQRFALQFDDNIIQQSTEYLTAELALPKLAFISSRPAKLLAEGFNKQLDTLGHAHEFQAAMAQFNQMIEQAEHKQPQVGGLEEQWTLINAWLTATLADKDRTQLSHYLTEAAALIICQGKISLRASKVDLNVTVNDLLSDHKNIVESQLILSLDEYSERLNNYHNQHVTNFHRYHQLRQQEMHNSKRELQLDAYKAKPLSSFVRNRLINEVYLPIIGDNLAKQMGTVGDNKRTDLMGLLLLISPPGYGKTTLMEYVADRLGLVFMKINCPSLGHDVTSIDPENAPNATARQELEKLNLGLEMGSNVMLYLDDIQHTHPEFLQKFISLCDGTRRIEGVWKGQAKTYDMRGKKFCVVMAGNPYTESGDVFKVPDMLANRADIYNLGDVLGGKEQQFALSYIENALTSNPVLAPLALRDMQDVYKLIAMAQTGQASSSDLSHQYSGAEVNEIISVLKHLSAIQEVILKVNLEYIKSAASAEDYRQEPPFKLQGSYRNMNKMAEKISAVMNHDELMQLIGDHYTGEAQTLTSGAEENLLKLAILRGVMDEEKTARWEHICSAFSSKQSLKVEGDPTTQAVQQLGQMAQSLEAIKLDLQQSDTTDLIKPINRVATAMHLLSKVWSGASEDDFKKKK
>NZ_CP047023.1|WP_158972420.1|4790129_4792148_+|hypothetical-protein
MNTQSDVIFWISLAVGIFVLVIGMILMLARLYKKVEQGRAMIINKMGNEPTVTFTGGVVLPVFHKMEIMDISLKTIEVDRSGSDGLICNDNIRADIKVGFFVKVNKNRDDVMKVAQAIGCERASNIATLEDLFSAKFSEALKTVGKSLEFEDLYAKRDKFRDMIIDNIGTDLNGYVLEDVAIDYLEQTPLEKLDPNNILDSQGIRKITQLTAEQHIQTNVFQRDEEMKIKRKDVETREAILELERQQADAEAKQKREVETVIARETAETERVQHEEKLKSEQARVQAAQEIEVQEQNKQREVEVAENNRLRAVAIEEERVIKARELEQIEREKEASLQRIANEKLLEHEKREIADVIRSRVEVDKTVAEKEEEINDVRVISEAERLRKSKVIAAEADAEEALVKDIKAAEAAEKSSEYIAKEKITIAAADLEVAEKLALSQRKEAEGNEALAAATGLAEAKVMEAKAIAKEQEGMADVRVQEAMADAVEKTGVAEAEVMAKKAAAEAEGMTKKFEAMATMSEQQRSHEEFRMRLDKHHEQNMESITTNVEIAKQQALVLSEALKEANIDIVGGDTSYLDSFVKSLSVGKAIDGTIGKSETLQTAFADHFNGDASFVEDAKELIAGFGGASGNAKDTAITALVAKFLKEGGDNPQVMEMVANALSKKNNSTAS
>NZ_CP047023.1|WP_158972419.1|4789454_4790087_+|hypothetical-protein
MELFLNGIFSFPTIIFTIPLIILMLFWLLAFAGLVDIEIFDIDTDSDAEVSGGGWLQSLGLSGVPLTVALTLVDIYAFAFTYLARKYLMPLLDGVLTATAIGFIVAIFAIVIAIPLAALCCKPLRKFFHTHQAISKRDLNGIICTVTTQTVTDTFGQATADDGMIYSVRAQIPNDLCKGSRIVLLEFCQKTDTYSVASEADVMAMSSTSI
>NZ_CP047023.1|WP_158972434.1|4803616_4804756_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MSILVLGSGQLARMMALAGHPLGLTVQAVDVADNKIVDPISKNVVNCSLDTAIEEANVVTVEFEHIPEALLETVHASNKLKPSAEAILTGADRVREKKLLEKLGIANCPFSIVTEVDQLDAAIDKLGEKLIIKASRDGYDGYGQWRLKDKSQLPDLKRHLAKLDLNEVPLIVEKMLSFEREVSLVAVRNQAGDIAFYPLAENLHYEGQLHVSIAPATNIDEDLNLQAQEIFTKLAESLDYVGVLAVEFFQMGQQLLVNEIAPRVHNSGHWTMQGAETCQFENHLRAVRGLPLGSTKVTRTTAMINIIGCKDFNRDMLSIPGCHLHWYGKTPRVKRKMGHFNLCADNYKELSKSIQALVEYLPEEFFPMLKDEAARLAQF
>NZ_CP047023.1|WP_158972436.1|4804766_4805255_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MPKVAIVMGSKSDWPTMQQAALMLEKLGVDYEAKVVSAHRTPQLLTEFAEQAADLGFQVIIGGAGGAAHLPGMIAAHTHLPVFGVPVRSSQLNGIDSLLSIVQMPKGVAVGTLAIGEAGAANAGLLAAQIIALQDTKVSAAIKTFRAEQTATVLAQPALELP
>NZ_CP047023.1|WP_158972438.1|4805510_4806776_-|transcription-termination-factor-Rho
MNLTELKNKPISELVSLAEEMKLENMARARKQDIIFSILKSHAKSGEDIFGNGVLEILQDGFGFLRSNDSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDSERYFALLKIAEVNYDRPENSRNKILFENLTPLHANERLTMERGNGSSEDITARVLDLASPIGRGQRGLIVAPPKAGKTLLLQNIAQSIAANHPECLLMVLLIDERPEEVTEMQRLVRGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDYNRSGTRREELLTTQDELQKMWILRKIVHEMSEIDAMEFLIGKLSMTKTNDEFFTAMRRQKS
>NZ_CP047023.1|WP_158972440.1|4807091_4807418_-|thioredoxin-TrxA
MSDKIITLSDDSFEADVINAAGPVLVDFWAEWCGPCKMIAPILHEIADEFEGKLTVGKLNVDENNETPPKYGIRGIPTLLLFKDGNVAATKVGALSKAQLVEFLNENI
>NZ_CP047023.1|WP_158972442.1|4807520_4808780_+|ATP-dependent-RNA-helicase-RhlB
MQTTHLTDTHFSDLAINKQVIEALSAANFNHCTPIQALSLPPLLEGNDIAGQAQTGTGKTIAFLVATFHYLLSNPQDSKRQPRAIIMAPTRELAVQIFNDAELLSKHTGLSLGLIYGGEGYQSQREKLQEGVDIIIGTTGRIIDYYKQNIFSLEGIQVAVLDEADRMFDLGFIKDIRYLFRRMPKPTERLSMLFSATLSYRVQELAYEHMDNPTHVQIEPERKTAERVKEELFYPSDEDKPYLLLTLMEEEWPEKAIVFANTKHSCERVTDWLQADNHRVGLLSGDVPQNKRLKILEDFTSGNVDILVATDVAARGLHIASVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISFACEKYSLNLPAIEEYVQHSIPVSEYNPADLIRDVEPPKPRFKKRVPNGKSQQRRHTGPRPHRK
>NZ_CP047023.1|WP_158972443.1|4808776_4810291_+|guanosine-5'-triphosphate,3'-diphosphate-pyrophosphatase
MNNIPTVSSFAQPEQLYAAVDLGSNSFHMVVVRVSAGSVQIIGKVKQKVRLAAGLDENMYLDQDSLERGWDCLKVFAERLQDIPLSNIKIVGTATLRLATNADVFIKRAEEILHHKLNVIDGLEEARQIYLGVAYTSANQGNSLVIDIGGASTEVIVGNDMTPIHLVSLNMGCVTYKERFFTDGTISQAAFNQAIEQAKILLEPVIDDFLSFNWQQCLGASGTPQAITEILVTQGISDSIRLDYLHNLKQQCIDCGTLDSLQIDGLTEARKIIFPSGLAILIALFEQLNIQEMQISGGALREGLIYGMLDNMQQNDRRTQTLEQTIERFHIESTHANRVKNLSLSLFKLVQKQVDLGKVDCEPMLIAGAMLCELGMHIEYKQHHMHGAYILKYLPMVGYTEQQRMGIKTLVQSHRQDIQLDLFESFHPDVRNALQILTRIIRLACILSIRRKDHLLAEFSFIIENEKWLLQFPENWLKSHPLIDAELANEKWQQHKVGWKLECI
>NZ_CP047023.1|WP_158972444.1|4810545_4811661_+|histidine-kinase
MNQLFGSVKYSSEVNEYTLQAMLEKALSQKPTGLFILCCEQSLNQLNSFESFLQSIPIPVFGGAFPSVLYDQQAQEQGIIFVAMHMPLDIRVFHDLDQAKAFELSFNLAEYQSLIVLVDGLSRNIEDALNQIFLQTDSDIAVFGGGAGSLSFQQKPCIFTNQGVFDNTIVMVAMQLKVSLAIGHGWQPLAGPYLANQVDDNHIVQLNFQPALEVYQQVVEEHSGKKFSDHEFFDLAKTYPFGIERLDDDLLVRESLTFEETSLVCVGRVPENVMLYILGGQPQQLINAAANAVEIHAKKSTISQAMLFDCAGRKLFLADEFDSELEQITSSLNSKNKLFGALVLGEIASGQCGGIHFHNKTAVIAMTKDDQ
>NZ_CP047023.1|WP_158972445.1|4811661_4813479_+|EAL-domain-containing-protein
MNTINRTLQVISIQHELSMNIGLGLQLDKMLDHFMQRAQRRLSLYSINVIYDLDKSANHSSAYLSFPNKKNVQKNWLLTKAQTLFEQHPTNFTEIKTDSYYYYFFIIPEFGVLVLERKHQAIDLMILHALQPLLTKLSISCQACIEHQNLKTEIEARKQAEQQLIQQSLLDPLTGLANRKMFIIKLTETITNTLNNGKFGAVFFIDLDRFKVINDSLGHNIGDQVLKFVGQRFLKFADDNNTIARMGGDEFVLLANNLSNDKDIAKAKATAIAEKLSTQIAKPIYIGENTLSVSISTGISLIPLENPQVQSIEQQVNLIIRNADIAMYSIKHANRNGFNFFNKNLQSLSEQHTQVEKHLKLAIERHELEVNYQPLVDKTGQIFGAEALLRWNNKILGQVSPVQFIPVAEESGLIIEIGKWVLVEACKLHNQLHAENPDTKFKYISVNVSPRQFNQASFVQDVINILEKFNIQGQHIRIEITEGVAMDNIELAIHKIRALREFGIECMLDDFGSGYSSLSYLNKLPLKTIKIDRSFVSNIDSSEYHQVIIHAVQEICRYSQLECIAEGVETQTEFDYLATQGFNAYQGYYFHKPMPVKAFLHSLLL
>NZ_CP047023.1|WP_158972446.1|4813498_4814494_-|porphobilinogen-synthase
MHEQFPLSRMRRLRKQDFTRRLMAENSLSVNDLIYPMFVLEGDNQKELVPSMPGVERLSIDLLVKEAHELAELGIPAIAIFPVTPADVKSLCASEAFNPQGLAQRAVRAIKAAVPQLGVITDVALDPFTSHGQDGLIDESGYVLNDETIEVLIKQALSHAEAGADIVAPSDMMDGRIGAIRQALEENGYINTCIMAYSAKYASSYYGPFRDAVGSSGNIKGGDKKSYQMDPANSDEALREIALDLQEGADMVMVKPGMPYLDIVRRCKDEFKVPTFAYQVSGEYAMHKAAFINGWLNEEQVILESLLAFKRAGADGILTYFAKQAAQLLAD
>NZ_CP047023.1|WP_158972447.1|4814496_4815936_-|diguanylate-cyclase
MTTEFFKFGFNRQSVIAVSCSGIFLLVFFSILGTQEADFVLGLLFGLLSAMGLLNFFVYLYSQLYRFIIYSLLVLTWGLALAIFYGIDERFIWPDNLWLQQHGLNIFVNLSLFFSVIFSYFFLNFSFHNKVVSLIIKAVVSLLLLNFVIGFFLSQQQLLIDLTICLSVSTLLILSIGTWLWKKNIFMAKSYTLAWSVFLICAGLSTLDYLQIMSVPQYTLLLGAVIKTCWLTLTMVLGHYQHKQELLNKKIVSLENDSEFFQTEIESLNAKEQSTENLEYSMQERTLELEVALRELSEKNRELEEKNTLDALTGIRNRSFFDKKYQAEVRRSRREQTQLSIVMIDIDHFKKVNDNYGHLVGDECIKIVANTIQSSLKRPSDDVCRYGGEEFSLILPNTELSGAVALVEKIRVKIEETVIQLDKVSVKITVSAGIGSGIADLSQAEESILALADQQLYKAKHAGRNQVMASNTLEQVSQE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP047023_2	2.2\|3985882\|18\|NZ_CP047023\|CRISPRCasFinder	3985882-3985899	18	NZ_CP047023.1	3985813-3985830	0	1.0

1. spacer 2.2|3985882|18|NZ_CP047023|CRISPRCasFinder matches to position: 3985813-3985830, mismatch: 0, identity: 1.0

taaccttatctggacagc	CRISPR spacer
taaccttatctggacagc	Protospacer
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MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage