CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047025	Cobetia sp. L2A1 chromosome, complete genome	2 crisprs	cas3,DinG,DEDDh,csa3,WYL	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047025_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047025_1

78292-78544

Orphan

Consensus_repeat	Method
GCCAGCCTCGNTNCTCCTC	CRT

4 spacers

The CRISPR arrays of NZ_CP047025_1

>merge|NZ_CP047025|1|78292-78544|CRT
GCCAGCCTTGAGCTGCTTCCCTCACTGCCAACTATGCAAATATGCACAGTAGCCACCAGCCAGCCTCGTTGCTCCCCTCGCTACCGAATATGGGATTTCCCACATTTCCTACTAGCCAGCCTCATTGCTGCTCCTCTTGCTAACTTAGGATTTTCTAAGTTTCCAGCCAGCCAGCCTCGTTGCTCCTCTCCTAAAAGAACAAAAGACTTCGATTAGCCACTAGCCAGCCAAGCCGAGAGCCTCGCTACTCCTC

>NZ_CP047025|1|1|78292-78544|CRT
GCCAGCCTTGAGCTGCTTC	CCTCACTGCCAACTATGCAAATATGCACAGTAGCCACCA
GCCAGCCTCGTTGCTCCCC	TCGCTACCGAATATGGGATTTCCCACATTTCCTACTA
GCCAGCCTCATTGCTGCTC	CTCTTGCTAACTTAGGATTTTCTAAGTTTCCAGCCA
GCCAGCCTCGTTGCTCCTC	TCCTAAAAGAACAAAAGACTTCGATTAGCCACTAGCCAGCCAAGCC
GAGAGCCTCGCTACTCCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047025.1\|WP_158772427.1\|89212_89632_-\|DUF423-domain-containing-protein	unknown	unknown	gnl\|CDD\|225238
NZ_CP047025.1\|WP_158772416.1\|74264_74618_+\|accessory-factor-UbiK-family-protein	unknown	unknown	gnl\|CDD\|377337
NZ_CP047025.1\|WP_158772417.1\|75832_76504_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223679
NZ_CP047025.1\|WP_158772412.1\|70813_71590_+\|ferredoxin--NADP-reductase	unknown	unknown	gnl\|CDD\|99792
NZ_CP047025.1\|WP_158772424.1\|84917_85940_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP047025.1\|WP_158772422.1\|83182_84328_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|223157
NZ_CP047025.1\|WP_158772411.1\|69567_70539_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182768
NZ_CP047025.1\|WP_158775195.1\|74712_74982_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047025.1\|WP_088743563.1\|78723_79290_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP047025.1\|WP_158772425.1\|86253_88422_+\|malate-synthase-G	unknown	unknown	gnl\|CDD\|235097
NZ_CP047025.1\|WP_158772413.1\|71749_72088_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP047025.1\|WP_158772410.1\|68969_69398_+\|host-attachment-protein	unknown	unknown	gnl\|CDD\|370820
NZ_CP047025.1\|WP_158772415.1\|73516_73855_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP047025.1\|WP_158772414.1\|72236_73484_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|274697
NZ_CP047025.1\|WP_158772419.1\|79517_81128_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|238206
NZ_CP047025.1\|WP_158772423.1\|84399_84930_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047025.1\|WP_158772426.1\|88766_89183_+\|hotdog-fold-thioesterase	unknown	unknown	gnl\|CDD\|224961
NZ_CP047025.1\|WP_158772421.1\|82118_83186_-\|DUF4105-domain-containing-protein	unknown	unknown	gnl\|CDD\|379156
NZ_CP047025.1\|WP_158772418.1\|76685_77318_+\|DUF4760-domain-containing-protein	unknown	unknown	gnl\|CDD\|374251
NZ_CP047025.1\|WP_158772420.1\|81155_82100_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679

Protein	Function_ID	Function_description	E-value
NZ_CP047025.1\|WP_158772427.1\|89212_89632_-\|DUF423-domain-containing-protein	gnl\|CDD\|225238	COG2363, COG2363, Uncharacterized small membrane protein [Function unknown].	3.00199e-27
NZ_CP047025.1\|WP_158772416.1\|74264_74618_+\|accessory-factor-UbiK-family-protein	gnl\|CDD\|377337	pfam04380, BMFP, Membrane fusogenic activity. BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.	3.51001e-15
NZ_CP047025.1\|WP_158772417.1\|75832_76504_+\|hypothetical-protein	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	2.17805e-87
NZ_CP047025.1\|WP_158772412.1\|70813_71590_+\|ferredoxin--NADP-reductase	gnl\|CDD\|99792	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	2.19363e-118
NZ_CP047025.1\|WP_158772424.1\|84917_85940_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	5.35583e-35
NZ_CP047025.1\|WP_158772422.1\|83182_84328_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|223157	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism].	1.2958e-64
NZ_CP047025.1\|WP_158772411.1\|69567_70539_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182768	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional.	2.30638e-92
NZ_CP047025.1\|WP_158772413.1\|71749_72088_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	1.9497e-57
NZ_CP047025.1\|WP_088743563.1\|78723_79290_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	4.37121e-49
NZ_CP047025.1\|WP_158772425.1\|86253_88422_+\|malate-synthase-G	gnl\|CDD\|235097	PRK02999, PRK02999, malate synthase G; Provisional.	0
NZ_CP047025.1\|WP_158772419.1\|79517_81128_-\|recombinase-family-protein	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	2.09139e-20
NZ_CP047025.1\|WP_158772410.1\|68969_69398_+\|host-attachment-protein	gnl\|CDD\|370820	pfam10116, Host_attach, Protein required for attachment to host cells. Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells.	3.97193e-37
NZ_CP047025.1\|WP_158772415.1\|73516_73855_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	4.68878e-57
NZ_CP047025.1\|WP_158772414.1\|72236_73484_-\|ammonium-transporter	gnl\|CDD\|274697	TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.	0
NZ_CP047025.1\|WP_158772426.1\|88766_89183_+\|hotdog-fold-thioesterase	gnl\|CDD\|224961	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism].	4.66419e-28
NZ_CP047025.1\|WP_158772421.1\|82118_83186_-\|DUF4105-domain-containing-protein	gnl\|CDD\|379156	pfam13387, DUF4105, Domain of unknown function (DUF4105). This is a family of uncharacterized bacterial proteins. There is a highly conserved histidine residue and a well-conserved NCT motif.	6.40507e-38
NZ_CP047025.1\|WP_158772418.1\|76685_77318_+\|DUF4760-domain-containing-protein	gnl\|CDD\|374251	pfam15956, DUF4760, Domain of unknown function (DUF4760). This family of proteins is found in bacteria, archaea and viruses. Proteins in this family are typically between 147 and 190 amino acids in length. There is a single completely conserved residue R that may be functionally important.	1.63028e-13
NZ_CP047025.1\|WP_158772420.1\|81155_82100_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	2.42105e-137

>NZ_CP047025.1|WP_158772418.1|76685_77318_+|DUF4760-domain-containing-protein
MSEVQFQELLALIQHETLMDFVSKFGPLAVVVSAALAFWGVWIMLRGQRRMARKRATLDVLYRLESDPAFLKCAAAYRDAKKGRNLACLLDKVSDRSNRDIEEEFMVDTYLNHMELLCVAMSEDIIDELFVFQYMRGSIIHDWHASKDYIIKCRQMHNNPRLHQKLEIFATYWGGELGSSYRPDSPSFVTRSDHATKYMNSNTGSAHTQD
>NZ_CP047025.1|WP_158772417.1|75832_76504_+|hypothetical-protein
MSLAMLRTRASLGLEAPEVQVEVHLSNGLPGLTIVGLPETAVKESRERVRSALLNAGFEFPARRITLNLAPADLPKEGGRFDLPIALGILVASGQIPEEAVAQLECLGELALDGSIRPVTGVLPAALCCRRAGRALVVPKANADEAALADKLEVLAVGHLLELVAHLLGRERITPHVCAVTPQARLPEPDLSEVRGQHQARRALEIAAAGGHNLLALCVWRPT
>NZ_CP047025.1|WP_158775195.1|74712_74982_-|hypothetical-protein
MLAPLASFADVIGMLGTTLVVGAFFMLQIGKLDSRSLTYNLMNLSGAVLLLLSLCINFNLASFVIEIFWIVASIVGLVRWRLSARPQIA
>NZ_CP047025.1|WP_158772416.1|74264_74618_+|accessory-factor-UbiK-family-protein
MFKNDVIGRMAQQIGERLQDASHGPEELQKSVQGVMRSAFDRMELVSREDFDIMMDVLTRTRSRVESLEKQVIALEALLEKQGLVATDSTADEDSQLSVADDESASYAADVERQRDA
>NZ_CP047025.1|WP_158772415.1|73516_73855_-|P-II-family-nitrogen-regulator
MKLITAIIKPFKLDDVREALADNGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVAVDDSDAEKVLDAITQAANSGKIGDGKLFVTALDDVIRIRTGERGADAV
>NZ_CP047025.1|WP_158772414.1|72236_73484_-|ammonium-transporter
MNEIIEVKYALDTFYFLVCGALVLWMAAGFAMLEAGLVRAKNTTEILTKNVALFAIACTMYMVVGYHIMYSSPEGGFLPNLGFLIGAENTAEEALASGGDIYYSARSDFFFQVVFVATAMSIVSGAVAERMKLWAFLLFAVVMTGFIYPVQGYWTWGGGFLSEAGFSDFAGSGIVHLAGASAALAGVLLLGARQGKYGKNGEINAIPGSNLPLATLGTFILWLGWLGFNGGSELVLSNIDEANAVAQVFVNTNAAACGGVIAALVLARLWFRKADLTMALNGALAGLVAITAGPLTPSIGAATLIGAIGGILVVFAIVGLDKLKIDDPVGAISVHGVVGLWGLMAVPLTNPDATFSAQLLGAATIFGWVFIASLVVWLVIKITMGLRVTAEEEYEGVDLAECGMEAYPEFTSSRK
>NZ_CP047025.1|WP_158772413.1|71749_72088_-|P-II-family-nitrogen-regulator
MKLVTAIIKPFKLDDVRESLSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKLEVAVDDTMIDTVIEAITNVANTGKIGDGKIFVSPLEQVIRIRTGETGKDAV
>NZ_CP047025.1|WP_158772412.1|70813_71590_+|ferredoxin--NADP-reductase
MSSLTTSEVIDVHHWNDSLFSFRTQREDSLRFKNGQFVMIGLEVEGKPLMRAYSIASPNYEEHLEFFSIKVQDGPLTSRLQHLKPGDQIMVSRKPTGTLVLDDLLPGENLYLFSTGTGLAPFLSVIQDPETYERYNKIILMHGVRHVSELAYADVIAQELPKHEYLGEDIAEKLIYYPTVTREEFRNQGRITDLVESGKLFEDIGLPPLDPKRDRAMICGSPAMLDDISAMLDTRGFAISPKMGVPGDYVIERAFVEK
>NZ_CP047025.1|WP_158772411.1|69567_70539_-|LysR-family-transcriptional-regulator
MRYSLRQLAVFVAVARHDNVSLAAESLAMSQSAASTSLAELERQFNCRLFDRLGKRLRLNGLGRELLPKAIALLDQAEELEQLLGQQDATGSLEIGATLTIGNYLAPQIIGSFLTDHPASRVELHVHNTHQLIDKLVNFELDIGLIEGEVEHPLLEEAHWVSDRLSIFCAPSHPLAQGLTQGLSQEGITLDRLLAARWIMRERGSGTRSTFEQALRPHLAGPSTSVAQRLDIMMELEHTEAIKRAVEAGLGIGCISRLALRDAFHRGSLIELPTPWLALTRAYRFVHHRDRFITQAMREFVASCRTLSGSASRSDEIVLPKVP
>NZ_CP047025.1|WP_158772410.1|68969_69398_+|host-attachment-protein
MVTYIVAADAARARIFERTAGKIIEVETLVHPESRQHTGDLRTGGKGESSGGHGSLHQTGDDGATSDKHQAFFAKEVAQYLKQTANSGKFDELIIAAAPGFLGVLRDKLDKPVTKLVTETLDKDLSHESADQIKARFSGLRH
>NZ_CP047025.1|WP_088743563.1|78723_79290_+|recombinase-family-protein
MAATIAYLRVSTDDQTTATQRASIEEKYKIDTWFTDEATSGAIKAEQREGLSKLLQYVRKGDTVVVYAIDRLGRNTIDVLETVEALAAKEVAVISTREGFDLSTPMGKMMLTMLAGMAELERSNIKARQMAGIERARTEGRALGREKTIDDAQVAQWRSENSASIKATAEHFDISTASVKRACRTAKG
>NZ_CP047025.1|WP_158772419.1|79517_81128_-|recombinase-family-protein
MTTEQPKAPAIKAYSYLRFSTPEQMKGDSFRRQTKLAKDFAQKLGLTLDDHSFHDLGISAYQGKNRQTGSLGIFLRAVEDEIIAEGSYLLVESLDRISRQSAHRAASVLSSICEMGINVVTLFDGRVYSAETLEQDPMTFMMAVLTFQRANEESATKAKRLRSVWESKRKMIAEGKPVRLTSRAPQWLKPSDDGVSFDIIPERGEVVRNIFKWTLEGTGKQSIAARLNREGAPIFGRGKLWHTSYVSKILTNTATYGTLTPFTSRADRKEHREACEPIEGYYPAVIDRETFEAVQMLKASASPRRGRHSSSPVQNIVGGIAVCPLCDSRMIRVTKNKAKGWVYLVCHRAKQGAGCVYNAVRVDMVEPLIQDNISYIAAQCPVGDDDFDKRFDDLTGQLEGVEGLIHNIVTSIENGLDPSKYPAIGERLTALQEQQEALKEEIDQMGQQRISFNNDVAQRRAQKLVAAVQENWEDKAQINTLMRGCFSKVVVNFTSGLLEFHWQQGGEETLIAYTFLDEKWVDPREASQKSHESHIA
>NZ_CP047025.1|WP_158772420.1|81155_82100_+|YifB-family-Mg-chelatase-like-AAA-ATPase
MVAAYIVGLQGHNLLFAGPPGTGKTMLASRLSGILPPLGENEALEVAAVRSVCGLPIMERWGQRPFRAPHHTASGVALVGGGSKPRPGEVSLAHHGVLFLDELAEFDRGVLEVMREPLESGRILISRASHQRRFPARFQLVAAMNPCPCGYLGDSRRNCSCTPGQIQRYQARLSGPLLDRIDLQVEVPGLPAEELTSATPGEGSEVVRARVLAARARQLARGGLNAHLSTPDLEAACQLDDAERQWLAGVLSRLNLSARAYHRVLRVALTLSDLIAQEGVQRAQLMEAIGYRQLDRMMGRDPARPGTGPERRSA
>NZ_CP047025.1|WP_158772421.1|82118_83186_-|DUF4105-domain-containing-protein
MSLTSGIARAALSLTMLGAAVWLVPALWFRLPGPEALRISISGLVAVLALLCVVALWWPSASAIRWRLAGGYLMLLVASVAWWHSITPQADRDWAPEVEHLVEGHVIKGGINTSGINKTQGDILHLDRVRNFEWHTAQDFTPHWESREYPLDELRSVDLLTSHWMGPQIAHTLVSFGFSDGRYLTFSVEIRKERDEQFSTLGGMFKQYELAVIAAEESDIVRVRSNVRGEEVHLYRVQMPQAMIRELLLAYVDESEALHSRPHFYNTAFSNCTTLVYAMMTRLTDGLPLDYRLLLSGYLPEYVADQDALSDVVPFDALKARSLINPAALAADQQSAGDFSRLIREGIPGADRPSF
>NZ_CP047025.1|WP_158772422.1|83182_84328_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MTTARPRRFLAHLYQDGPHNPFPGIKALERRLGHALPYQYGSNEGLDMPHRELGGALGSALADLSRSYADADAWQLRQQLAERLKVPFESLLVDAGADSLLALIIRATVTAGERVVTSAGTYPTLAYFARAQGAEVIEVPYSETFADASHDGQLAPDLAALAAAAHEHDARIVYLANPDNPSGHLHSDAAVCALRDALPEHCSLLLDEAYHDFRDDAATADSTPMAATFRLRTFSKAYGLAGLRLGFMIAEPADITILLKMRIHYAVSAPALAAGELLMTHPEEAAAHVANVIKVREQLAAHLRSLDAEVLSSATNFICVRLKNAELAAQVQQQLLAEGVLINRPPHPALGHILRISTLEDSLVPGRLAQLERAVQELPTP
>NZ_CP047025.1|WP_158772423.1|84399_84930_-|hypothetical-protein
MQHLKRWEYLLTTGVLLGLLTGCMGLDQVPRAERDPIYGLGQSAARLIAEQPWSPPLAQQVLLLAPPKVDAMLDTQPGALNEALTRALLSLQDGPQVLNWNNDHSGIASHQWRLETLLEASGIPLKLSDRTLQSYQLTLTLVRSTGVERNEIRTLTLNGAFDQAALEALASTRTAP
>NZ_CP047025.1|WP_158772424.1|84917_85940_-|alpha/beta-fold-hydrolase
MPDFSELLDHGPFIRLPDMLPGQTSSPLERYLSHYGLDALRNEDITVHAGHLDAGGFQLWAQLWTPSKPRGTIFVVHGYFDHLALYRHLLAHLLQQGWQVALWDLPGHGLSSGETASIDDFGDYVGCLKVFQQYLEARDLAPRPWFGVGQSTGGSVLATDALTRGMDSQWRGIALLAPLVRPYGWPQSRWLHSMARPFIDSIPRKYRANTNDAAFYEFLSTNDPLQADRLAVKWVTAMRAWIPRIQALPPCQLPTLILQGEQDTTVDWQWNLGVLASKFPNARIYRHPEAQHHLVNEAEPIRTVLFTELDTFLDALAPRATSTEEDAKRNNDPGAATCNT
>NZ_CP047025.1|WP_158772425.1|86253_88422_+|malate-synthase-G
MTDRIHIERLAIDAGLHRFIEQEALPGTGITPAAFWTGVDALLHELAPRNRELLEIRENLQGEIDRWHREHPGKVDLTAYKAFLEEIGYLLPEPNTVEATTANVDSEICQQAGPQLVVPVMNARYALNAANARWGSLYDALYGTDAISDDDGAERGKDYNPVRGAKVVAYARQVLDTIAPLAGGSHHDSEGYAIRDGHLLVRVAGRDLSLKSPERFLGYRGEESAPGSIIFAHNGLHAELVIDAEHAIGKTDPAGVSDLIMEAALSTIMDCEDSVAAVDADDKVVVYRNWLGLMKGDLTETIEKNGRSMTRRLNADREFTGADGKPRVLHGRSLMLIRNVGHLMTNPAILLDDGSEAPEGIMDAIFTSLIAIHDIQGEGKRGNSRTGSVYIVKPKMHGPEEVAFADELFSRVETLLGLPNATIKMGIMDEERRTTVNLKSCIAAASSRVAFINTGFLDRTGDEIHTSMEAGPMLRKGDMKGSAWIQAYEKWNVDVGLECGLRGRAQIGKGMWAMPDLMAAMLEQKIGHPRAGANTAWVPSPTAAVLHALHYHQVSVKDVQHDLISRPRASLDDLLTIPLEPNPQWSAEEIQAELDNNAQGILGYVVRWIDHGTGCSKVPDIHDVGLMEDRATLRISSQHIANWLHHGIVDTALVQDTLARMAGVVDRQNADDASYRPMTDDLEGSVAFQAASELVFKGRVQPSGYTEPVLHRRRLEKKQQVR
>NZ_CP047025.1|WP_158772426.1|88766_89183_+|hotdog-fold-thioesterase
MPVMHAAAIEDFLDDVFPQRMGTIEAVGEGWATMGLAIEDEHLRPGGSISGPAMMALADVCLYVAILGEIGPEPMAVTSDLNIHFLRRARGDRDLMATARIRKLGRRLAVGEVELFSHGDTDPVAIVTATYALPERDD
>NZ_CP047025.1|WP_158772427.1|89212_89632_-|DUF423-domain-containing-protein
MQRNDSHSRHWWLAMGLAGMSTVALGAFASHGLRGTISPDMLRVFETGVRYQMWHVLAAVGVLAWRSVQPLRGQMLTLGLWAAGMLLFSGSLYALATTSRTQLGIITPIGGLLLLAGWLSLAITGWRQRGSEEKTHNKL

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Crispr_ID: NZ_CP047025_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047025_2

3290748-3290841

Orphan

Consensus_repeat	Method
TCGACTGGAGCGGGAAACGAGATTCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047025_2

>merge|NZ_CP047025|2|3290748-3290841|CRISPRCasFinder
TCGACTGGAGCGGGAAACGAGATTCGACCGGGCTGACGTTCAGCTCGCGACTCCGTTGACCCTGGACTCGACTGGAGCGGGAAACGAGATTCGA

>NZ_CP047025|2|1|3290748-3290841|CRISPRCasFinder
TCGACTGGAGCGGGAAACGAGATTCGA	CCGGGCTGACGTTCAGCTCGCGACTCCGTTGACCCTGGAC
TCGACTGGAGCGGGAAACGAGATTCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047025.1\|WP_158774657.1\|3295207_3296107_+\|protease-HtpX	unknown	unknown	gnl\|CDD\|235478
NZ_CP047025.1\|WP_158774651.1\|3287627_3288506_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|236986
NZ_CP047025.1\|WP_158775541.1\|3286437_3286932_-\|thioesterase	unknown	unknown	gnl\|CDD\|370533
NZ_CP047025.1\|WP_158774650.1\|3287009_3287570_-\|nitroreductase	unknown	unknown	gnl\|CDD\|182761
NZ_CP047025.1\|WP_158774662.1\|3301051_3302218_+\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|236039
NZ_CP047025.1\|WP_158774660.1\|3298729_3299509_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270419
NZ_CP047025.1\|WP_158774654.1\|3291986_3292433_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|376583
NZ_CP047025.1\|WP_158774648.1\|3282574_3283771_-\|aminoacetone-oxidase-family-FAD-binding-enzyme	unknown	unknown	gnl\|CDD\|224992
NZ_CP047025.1\|WP_088742768.1\|3283973_3285563_-\|ABC-F-family-ATPase	unknown	unknown	gnl\|CDD\|237894
NZ_CP047025.1\|WP_158774661.1\|3300290_3301055_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226634
NZ_CP047025.1\|WP_158774659.1\|3296852_3297746_-\|amidinotransferase	unknown	unknown	gnl\|CDD\|224747
NZ_CP047025.1\|WP_158774655.1\|3292602_3293598_+\|ribosome-biogenesis-GTPase-YlqF	unknown	unknown	gnl\|CDD\|274669
NZ_CP047025.1\|WP_158774653.1\|3289420_3290389_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP047025.1\|WP_158774656.1\|3293792_3295031_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181738
NZ_CP047025.1\|WP_158774649.1\|3285672_3285954_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|185338
NZ_CP047025.1\|WP_158774652.1\|3288650_3289424_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|237896
NZ_CP047025.1\|WP_158774658.1\|3296218_3296842_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|132427
NZ_CP047025.1\|WP_158774647.1\|3281558_3282467_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
NZ_CP047025.1\|WP_158775543.1\|3297934_3298711_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP047025.1\|WP_158774646.1\|3280183_3281383_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341026

Protein	Function_ID	Function_description	E-value
NZ_CP047025.1\|WP_158774657.1\|3295207_3296107_+\|protease-HtpX	gnl\|CDD\|235478	PRK05457, PRK05457, protease HtpX.	3.22154e-166
NZ_CP047025.1\|WP_158774651.1\|3287627_3288506_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|236986	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.	3.98887e-165
NZ_CP047025.1\|WP_158775541.1\|3286437_3286932_-\|thioesterase	gnl\|CDD\|370533	pfam09500, YiiD_C, Putative thioesterase (yiiD_Cterm). This entry consists of a broadly distributed uncharacterized domain often found as a standalone protein. The member from Shewanella oneidensis is described from crystallography work as a putative thioesterase because it belongs to the HotDog clan of enzymes. About half of the members of this family are fused to an Acetyltransf_1 domain pfam00583.	9.12234e-37
NZ_CP047025.1\|WP_158774650.1\|3287009_3287570_-\|nitroreductase	gnl\|CDD\|182761	PRK10828, PRK10828, putative oxidoreductase; Provisional.	8.35968e-60
NZ_CP047025.1\|WP_158774662.1\|3301051_3302218_+\|acetylornithine-deacetylase	gnl\|CDD\|236039	PRK07522, PRK07522, acetylornithine deacetylase; Provisional.	3.07152e-174
NZ_CP047025.1\|WP_158774660.1\|3298729_3299509_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270419	cd13701, PBP2_ml15202_like, Substrate binding domain of ABC-type histidine/lysine/arginine/ornithine transporter-like; the type 2 periplasmic-binding protein fold. This group includes uncharacterized periplasmic substrate-binding protein similar to HisJ and LAO proteins which are involved in the ABC transport of histidine-, arginine, and lysine-arginine-ornithine amino acids. This group belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.48468e-94
NZ_CP047025.1\|WP_158774654.1\|3291986_3292433_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	2.87437e-80
NZ_CP047025.1\|WP_158774648.1\|3282574_3283771_-\|aminoacetone-oxidase-family-FAD-binding-enzyme	gnl\|CDD\|224992	COG2081, COG2081, Predicted flavoproteins [General function prediction only].	3.68451e-168
NZ_CP047025.1\|WP_088742768.1\|3283973_3285563_-\|ABC-F-family-ATPase	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NZ_CP047025.1\|WP_158774661.1\|3300290_3301055_+\|ABC-transporter-permease-subunit	gnl\|CDD\|226634	COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism].	5.76268e-76
NZ_CP047025.1\|WP_158774659.1\|3296852_3297746_-\|amidinotransferase	gnl\|CDD\|224747	COG1834, COG1834, N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism].	1.31289e-60
NZ_CP047025.1\|WP_158774655.1\|3292602_3293598_+\|ribosome-biogenesis-GTPase-YlqF	gnl\|CDD\|274669	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. [Protein synthesis, Other].	5.50899e-131
NZ_CP047025.1\|WP_158774653.1\|3289420_3290389_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.03146e-105
NZ_CP047025.1\|WP_158774656.1\|3293792_3295031_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181738	PRK09265, PRK09265, aminotransferase AlaT; Validated.	0
NZ_CP047025.1\|WP_158774649.1\|3285672_3285954_-\|peptidylprolyl-isomerase	gnl\|CDD\|185338	PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C; Provisional.	3.62835e-32
NZ_CP047025.1\|WP_158774652.1\|3288650_3289424_-\|ABC-transporter-permease	gnl\|CDD\|237896	PRK15066, PRK15066, inner membrane transport permease; Provisional.	7.41876e-158
NZ_CP047025.1\|WP_158774658.1\|3296218_3296842_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|132427	TIGR03384, betaine_BetI, transcriptional repressor BetI. BetI is a DNA-binding transcriptional repressor of the bet (betaine) regulon. In sequence, it is related to TetR (pfam00440). Choline, through BetI, induces the expression of the betaine biosynthesis genes betA and betB by derepression. The choline porter gene betT is also part of this regulon in Escherichia coli. Note that a different transcriptional regulator, ArcA, controls the expression of bet regulon genes in response to oxygen, as BetA is an oxygen-dependent enzyme. [Regulatory functions, DNA interactions].	1.13021e-21
NZ_CP047025.1\|WP_158774647.1\|3281558_3282467_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.14103e-59
NZ_CP047025.1\|WP_158775543.1\|3297934_3298711_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	5.88757e-135
NZ_CP047025.1\|WP_158774646.1\|3280183_3281383_-\|MFS-transporter	gnl\|CDD\|341026	cd17473, MFS_arabinose_efflux_permease_like, Putative arabinose efflux permease family transporters of the Major Facilitator Superfamily. This family includes a group of putative arabinose efflux permease family transporters, such as alpha proteobacterium quinolone resistance protein NorA (characterized Staphylococcus aureus Quinolone resistance protein NorA belongs to a different group), Desulfovibrio dechloracetivorans bacillibactin exporter, Vibrio aerogenes antiseptic resistance protein. The biological function of those transporters remain unclear. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.56226e-82

>NZ_CP047025.1|WP_158774653.1|3289420_3290389_-|ATP-binding-cassette-domain-containing-protein
MSRPALSIRGLTKVYDNGFEALKGIDLDVPEGDFFALLGPNGAGKSTTLGVVCSLVQKTAGKVEVFGIDIDKDFSKAKYHLGVVPQEFNFNQFEKVQDIVMTQAGYYGMPMKEARPRAERLLKDLGLWDKRDTASRTLSGGMKRRLMIARALIHKPRLLILDEPTAGVDIELRRSMWDFMRRINKEEGTTIILTTHYLEEAESLCRNIAIINHGEIVHNTSMRKLLKQLDIETFLLDTREPLLVAPVIEGFEVSLSESTQLSLSVRKGQSINDAFAALSAAGITVVSMRNRANRLEELFVNLVERSNAESGIASNVAKEIAQ
>NZ_CP047025.1|WP_158774652.1|3288650_3289424_-|ABC-transporter-permease
MNPRQLWVALTTIVVKEIRRFTRIWPQTLLPPSITMTLYFVIFGNLIGSRIGTMDGIKYMDYIVPGLIMMSVITNSYSNVASSFFSNKFQRSIEELMVSPLPSWIILLGYIIGGAARGLGVGIIVTAVAFLFTDLDIHHPILTIGVVVLTALLFSIGGFINGLFARKFDDISIVPTFILTPLTYLGGVFYSINMLPEFWQNVSLANPILYMVNTFRYGILGVSDINVGPALAAIAVFIIGMFTFALWLLERGKGIRS
>NZ_CP047025.1|WP_158774651.1|3287627_3288506_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MAHPTAVNVPDEARPETLKDAPLGRESAYPEQYDASLLFPIARAANRGPIGISDAELPFVGDDEWHAFEVSWLDEAGKPWVRIARFRLPAASPNLIESKSWKLYLNSLNQTCFKEQADVQAVLERDLACAAGAPVEVRLMGLDDAELEVKRLPGECLDELAVTVDHYTPSPELLMADESDIVSEDLHSHLLKSNCPVTGQPDWGSVWIRYRGPRIDRARLLAYLISYRQHQDFHEHCVEHLFVDLMARVKPESLLVMARYMRRGGLDISPWRATADLEGEARASLPLRLSRQ
>NZ_CP047025.1|WP_158774650.1|3287009_3287570_-|nitroreductase
MDALTLLHERNSMGKLMAPAPNAEQMEALYQAALRAPDHAVLTPWRFIEFTGAGLERLGELFAEAERNKSPAGDEAAQAAARKKPLRAPMVVAVIARVTPDHPKVPRVEQVVSAGCAAHAILFAVQALGLGGMWRTGGYAFDATVHAGLGMGEHDELVGFLYLGTPGGRLKPLAARDSADFVERWQ
>NZ_CP047025.1|WP_158775541.1|3286437_3286932_-|thioesterase
MPVAEDLDQFRDWLSRAIPLAGQLGLTGIRWSDPLHSQGRLDWQLALAPNLNDKGTAFGGAMSLEATLCGWSWLTLWLRARGIQRDIVVSRASQQFLSPVNAAYRMSCAPLDEQALVGVSERLLVGRRARLTLVQQLWCQTEASSSPVVCFEAQGDYVVLAPAG
>NZ_CP047025.1|WP_158774649.1|3285672_3285954_-|peptidylprolyl-isomerase
MARIAMARHILVKSEAEAQRLKQELERGQPFEKLAKKHSTCPSGKQGGDLGEVRPGQMVGGIDRAIFKGPLNSLQGPLKSKFGYHLLEVFFRG
>NZ_CP047025.1|WP_088742768.1|3283973_3285563_-|ABC-F-family-ATPase
MISTANLTMQFGAKPLFEDVSAKFGRGHRYGLIGANGCGKSTMMKILGGDLESSGGHVMLEPNIRLGKLRQDQFAYEEYTVLDTVIMGHERLAVVKAERDRIYSLPDMSEDDGMKVAELEVEFAELDGYTAEARAGELLMGLDIPIDQHLGPMSEIAPGWKLRVLLAQALFSDPDLLLLDEPTNHLDINTIRWLEDVLTSRSSTMIIISHDRHFLNSVCTHMADLDYRELRLFPGNYDEYMTAATQAREQLQSDNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIQLSEIKPSSRISPFIRFEQTKKVHNNAVLVDKLAKGFDGNTLFENFSFTVAAGERVAIIGPNGIGKTTLLRTLVGEMHPDAGSIKWTDAADVGYYAQDHAHDFATDMTLYDWMAQWTSGGEQVVRGTLGRMLFSNDDILKSVKVISGGEQGRMLFGKLILKQPNVLVMDEPTNHLDMESIEALNLALENYPGTLIFVSHDREFVGSLATRIIELSADGVVDFSGTYDDYLRSQGVIV
>NZ_CP047025.1|WP_158774648.1|3282574_3283771_-|aminoacetone-oxidase-family-FAD-binding-enzyme
MATYDVIIIGAGAAGLMCAATAGYQGKRVLVLDHANKAGKKILMSGGGRCNFTNLDAGPSNFFSRNPHFCISALKRYTPHHFLELVERHGLEHVEKKPGQLFCADSAKDLLAILMTECEWAGAEIRLNTRITAIEQAGEGMRVATGNGSHTAGRVVVATGGLSIPTLGASGFGYDIARQFGLEVTDTYAALVPFTLTSQWKERLSPLSGLSCDVSVTAGKGQYREPMLITHRGLSGPAMLQASSWWMPGQPLNIDLLPGVNAYDELIALREQHPKRQVGPWLGERLPKRLAQSVVEWQDADAGRISERSLAELSNARIEQLAQSLNHWQLKPAGTEGWRTAEVTMGGVVTDAISQKDFSVRDLPQLAFIGEVLDVTGELGGYNFQWAWSSAVACGLNC
>NZ_CP047025.1|WP_158774647.1|3281558_3282467_+|LysR-family-transcriptional-regulator
MELRTLRTFVTVATLKSFSAAARELHIVQPAISRQIADLESELGVSLLWRNTREVRVTAPGEALLEEAQRMLALEVQARKRVALAASGQTGTLRIGYMSSACASFVPSLMRDFARHHPDVTLVLHEMTAQQQLDAFAREEIDVGLSRPLPLELRETLTVLPVYDDELMVVVPRDHRLAKRKRLALRELSHEDFVLFQRDQATGLFDHIISACGDADFSPRITRQPALMQTLLSEVAAGLGVAVVPACIRRLQCDGCHFIALRPALRAVPLELHYPDTPSRPVIEAFVALVEKAIPAIREQMA
>NZ_CP047025.1|WP_158774646.1|3280183_3281383_-|MFS-transporter
MNTSSCDAVTHPESDSPRPLSSGGRFTLLAIACLTIMVGCVVAPGLPSIAAALGVESHASWLITLPSLGAVLFAPLAGRMIDRIGAYRALIGGLFLYGLLGAGGALLDGTAVVFADRILLGGVTAVVMASGTTLISEWYHGHARLAMIAQQGMSIELGGVIFLFVSGVLAGIAWQWPFALYLLAWLLLVMLWVLVPKQSPPAPKDEAGHGAGGAIASSLNSVYLAAAVSMTLFFSAIVMLPMRLNVMGLSETATGIFLAAISLVAVLAAMQMPRVSRGLGEMPILIVAFALYSASLFVFQQADSIQVMGLGIVLSGMGFGFSIPLLNHMTVERSHVAVRGRNLSYLTMALFLGQFLTSFLEFLPGGSRSVFGFAAVLGLVFAVLYLADHLLKRNSRQAQ
>NZ_CP047025.1|WP_158774654.1|3291986_3292433_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MSEHDSQTQPTNADQTQDKLIRSEDEWRARLTPEQYRVAREAGTERPFTGDHEVSPTAGTYHCIACDAILFDNDTKFDSGCGWPSFDRPYQDAAIEEHFDTSMGMRRVEVRCRRCESHLGHVFPDGPTDTGQRYCINSVSLRFKPVRD
>NZ_CP047025.1|WP_158774655.1|3292602_3293598_+|ribosome-biogenesis-GTPase-YlqF
MLGWYPGHMHKARRQIKDALPEIDVVIEVLDARLPYSSTNPVLAELTRHKPVLKLLSRADLADPIRTREWVEYFDAQPNTRALAITTLDARDLKQIPKLCREMAGHIRVDRDARVMVMGIPNVGKSTLINGLAGRKIAKTGNEPAVTKRQQKIRIDGGIALIDTPGVMWPKIEDQASAYRLAGSGAIRDTAIDYTDVAVIVAAELAKRYPAELTARYKLKSLPTYSANPDAERVESDGPRRLDLMALSGFNGVAILEEIASKRGGLRAGGSLDLHRGAEVLLHELRDGKLGRMTLETPADIPAEPVPEASGELESTGESENNGKNSGETST
>NZ_CP047025.1|WP_158774656.1|3293792_3295031_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MDTEQKKPREIRKSHKLDNVCYDIRGPVLEHAKRLEDEGHRILKLNIGNPAPFGFEAPEEILQDVMRNLPTAQGYCDSKGLYSARKAIMQECQRKDIQGVGIEDIYIGNGVSELIVLAMQALLDDGDELLVPAPDYPLWTAAANLAGGRAVHYLCDEAQDWAPSIEDIRAKVTAHTKGIVLINPNNPTGAVYPPSVVKDILQVAREHGLVVFSDEIYDKILYDDVEHVSTGALADDLLIVTMNGLSKSYRCAGFRSGWMILSGDKRPAADFISGLDMLASMRLCANVPAQHAIQTALGGYQSINDLVLPGGRLLAQRDVAWKKLNEIPGVSCVKPKGALYMFPRLDPEMYPFEDDQQLVLELLLEEKMLLVQGTAFNWPTPDHLRIVTLPYADQLEEAIDRLARFLARRRKA
>NZ_CP047025.1|WP_158774657.1|3295207_3296107_+|protease-HtpX
MMRIALFLITNLAVVLLASITLRLLGFDGYMEANGINYTALLIFCFIIGMAGSVISLFLSKRMAKSSTGTVIIEQPHNDTERWLVNTVEELARDAGIKMPEVGIFPAQQSNAFATGWNRNDALVAVSAGLLNGMRPEEVRAVLAHEIGHVANGDMVTLTLIQGVVNTFVMFFARIAAHAIDAFLKRGNNNGGLGMFGYMGVVFVLELVLGLLASMIVAWFSRWREYRADAAGARLAGSGAMINALARLKQEHGLPDQMPDSMTALAITTGQSRKLMEKLFASHPPLDDRIAALKAAADK
>NZ_CP047025.1|WP_158774658.1|3296218_3296842_-|TetR-family-transcriptional-regulator
MASRRDNNAREDDLIEATLTCIASEGISRTTVRRVAEYAGVSNGLIRFYFEGKDNMLYAAYRRFLERLLSDASDTIEGRDLAPHERLEAFLKANLSPPIVTPQTLLLWANFLPLTYGDPRMAEIRREAYRETTGLFRRLVEDVLLAEGREEDETRLQHLTIALNGLVDGLWIEGALRGDTLDVGELQQIGLEAAVSLLGLSGWKGSS
>NZ_CP047025.1|WP_158774659.1|3296852_3297746_-|amidinotransferase
MSITTSLSRFGCHSMAAPMTRVLMRRPGDSLRNADPVVWHYNHYFNAEKAISQYQVLVEMVEESGAEIVWIEDTNDGLSDAMFTRDASVVTRAGAVLFQMGKPLRRDEPSRHGQVYEQAGIPVIGRLEGDAAIEGGDTLWLDENTLVVGMGFRSNREGVRQLNALLNPHGIEVLGFDLPVWEGEAACLHLMSVISPLADDTYLVHPKLIPAALWTLMKARGIRFVVAPEEEFHQSLGLSLNVMPLSPNDCVMIDGFPQTRAVMEAAGVRVRTFEGDALCMACEGGPTCLTNPILREG
>NZ_CP047025.1|WP_158775543.1|3297934_3298711_+|ATP-binding-cassette-domain-containing-protein
MRKTNDDPVIDIRGLWKSFDGHEVLKGIDLTAQRGDVISLIGSSGSGKSTLLRCINLLETPNDGTLRLLGEDVALRRRGQQLEPANRRQLRLLRARLAMVFQNFNLWPHMSLEENLMEAPMQVLGQSRAEAREHAHQLLERVGLHAHRNARPTTLSGGQQQRGAIARALAMSPDVLLFDEPTSALDPELVGEVLEVMRGLAAEGRTMIIVTHEMKFAADVANKVIFLNQGSIEAQGTPDQIFRTPSSERLKQFIGSVT
>NZ_CP047025.1|WP_158774660.1|3298729_3299509_+|transporter-substrate-binding-domain-containing-protein
MKSLSTPVIASLGAVALTLCTTAQADVVRIGFASEPYPPFATLQSDGSVTGWEVDIANAVCDAAKLECEVVTSSWDGLIPALTTRKIDAIAASLSITEQRRKVIDFSDKYYQTSAAVMGAKGDDIIPTPEGLAGKTLGVQSASIHQTYAKRHFPDTRVREYQTQDEANQDLFAGRIDATLADILALDNYLATEDGELCCDMKGNVAHDESILGSGVGFGVRKGDSKLLERLNAGIAEIRASGRYDEISKQYFDFNIYGD
>NZ_CP047025.1|WP_158774661.1|3300290_3301055_+|ABC-transporter-permease-subunit
MADSRLPLHRIVLVAIIAAILVAIGTQMHWEWIAQYRGEIVKGILLTLVLLVSTSVAGFLLAVPLGLIQARGPRPLAWLARSFCNLIRGTPLLLQLWILYYGLGSLFPYIPGLRGSWLWPVLADPWIYAFCALTLSFAGYEGEIMRGAFAGVPRGELEAARSLGMSPFSILRRIWLPRAVQRVLPTLNGELIIQLKATPLVATISAVDTYAVFGRIRQETYIVYEPLLLMALIYLVIAGLITLGFRSLEKRHAS
>NZ_CP047025.1|WP_158774662.1|3301051_3302218_+|acetylornithine-deacetylase
MRPDMQRTLDILSRLIAFDTTSDRSNLALIHFVRDLLAEHGIQATVLLNTKGDKASLLATIGPSVAGGVVLSGHTDTVPVTGQSWAQDPYQATLHDDRLYGRGSVDMKGFIGLCLAMVPHFLASPLKRPIHLAFSYDEESTCMGCLPLIDHMRATLPEVTAVIIGEPTQGRVVSAHKGVHSWRTEVTGVPAHSSRPDLGVSATFYAARIISELERTANDLRTHASHGELFEPPYSTLHVSAIQGGNAPNIIAKDARLHWELRNLPSDTPESVRERVDGFTDQLAREMQTQSSDCLIETLEDYASVPALMLEPGGKAEALAFALTGQHEQCGVGFCSEAGWFQDRGFSTVVCGPGSIAQAHKANEFIEVAELERYREFLMRLTEHQGAD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

717687 : 726044

Acinetobacter_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158775273.1\|717687_719175_+	anthranilate synthase component I	S4VNU7	Pandoravirus	2.5e-37	32.8
WP_158775274.1\|719528_720119_+	anthranilate/aminodeoxychorismate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.5e-65	60.4
WP_158772835.1\|720220_721267_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	2.6e-94	53.9
WP_158772836.1\|721266_722094_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	9.8e-60	50.4
WP_158772837.1\|722222_723020_-	HAD-IIB family hydrolase	NA	NA	NA	NA
WP_158772838.1\|723090_723927_-	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_158772839.1\|723934_724729_-	glycerophosphoryl diester phosphodiesterase	M1ICP4	Paramecium_bursaria_Chlorella_virus	1.1e-12	25.2
WP_158772840.1\|724877_726044_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	5.5e-24	33.6

DBSCAN-SWA_2

1801594 : 1847845

Staphylococcus_prophage(16.67%)

transposase,integrase,protease

attL 1797141:1797155|attR 1816270:1816284

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1797141:1797155	attL	NA	NA	NA	NA
WP_158773618.1\|1801594_1802719_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_158775386.1\|1804571_1804790_+\|integrase	integrase	NA	NA	NA	NA
WP_158773619.1\|1804789_1806664_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_158773620.1\|1806647_1807097_+	hypothetical protein	NA	NA	NA	NA
WP_158773621.1\|1809395_1810454_+	CHAT domain-containing protein	NA	NA	NA	NA
WP_158773622.1\|1810587_1811595_+	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_158773623.1\|1811980_1812508_+\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_158773624.1\|1812504_1812909_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.2e-15	41.1
WP_158773625.1\|1813187_1814267_+	hypothetical protein	NA	NA	NA	NA
WP_158773626.1\|1814764_1815634_+	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_158773627.1\|1815858_1816116_-	hypothetical protein	NA	NA	NA	NA
WP_158773628.1\|1816397_1817645_-	taurine catabolism dioxygenase TauD	NA	NA	NA	NA
1816270:1816284	attR	NA	NA	NA	NA
WP_158775387.1\|1817886_1818801_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158773629.1\|1818966_1820352_-	diguanylate cyclase	NA	NA	NA	NA
WP_158775388.1\|1820594_1823042_+	DNA polymerase II	A0A0P0YM26	Yellowstone_lake_phycodnavirus	4.5e-28	25.6
WP_158773630.1\|1823259_1824978_+	multidrug ABC transporter permease/ATP-binding protein	NA	NA	NA	NA
WP_158773631.1\|1825442_1827467_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_158773632.1\|1827555_1828740_-	DUF1513 domain-containing protein	NA	NA	NA	NA
WP_158773633.1\|1828746_1829886_-	hypothetical protein	NA	NA	NA	NA
WP_158775389.1\|1829985_1831482_-	thiol oxidoreductase	NA	NA	NA	NA
WP_158773634.1\|1831675_1832989_-	peptidase	NA	NA	NA	NA
WP_158773635.1\|1833417_1835055_-	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.3e-17	29.0
WP_158773636.1\|1835051_1836167_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_158773637.1\|1836168_1837257_-	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_158775390.1\|1837419_1839276_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_158773638.1\|1839654_1841052_-	LysM peptidoglycan-binding domain-containing protein	I1VXB7	Halocynthia_phage	1.3e-08	41.4
WP_158773639.1\|1841278_1842067_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_158773640.1\|1842700_1843546_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_158773641.1\|1843806_1844295_+	ribonuclease HI	A0A1P8DJF0	Virus_Rctr71	4.2e-34	47.7
WP_158773642.1\|1844428_1845202_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.7e-42	41.6
WP_158773643.1\|1845201_1845975_+	NAD(+) diphosphatase	NA	NA	NA	NA
WP_158773644.1\|1846124_1846442_-	SCP-2 family sterol carrier protein	NA	NA	NA	NA
WP_158773645.1\|1846750_1847845_+\|protease	protease SohB	NA	NA	NA	NA

DBSCAN-SWA_3

1903593 : 1910024

Acinetobacter_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158775398.1\|1903593_1904748_-	hypothetical protein	A0A172Q0S8	Acinetobacter_phage	2.5e-45	34.5
WP_158773690.1\|1904762_1905518_-	hypothetical protein	NA	NA	NA	NA
WP_158773691.1\|1905517_1906714_-	hypothetical protein	A0A172Q0Y1	Acinetobacter_phage	9.9e-13	27.3
WP_158773692.1\|1906710_1907139_-	hypothetical protein	NA	NA	NA	NA
WP_158773693.1\|1907195_1907774_-	chemical-damaging agent resistance protein C	K4JRX3	Caulobacter_phage	1.3e-29	36.0
WP_158773694.1\|1907867_1908440_-	chemical-damaging agent resistance protein C	K4JRX3	Caulobacter_phage	1.6e-37	44.6
WP_158773695.1\|1908540_1909548_-	TerC/Alx family metal homeostasis membrane protein	K7QKE8	Escherichia_phage	1.2e-75	47.6
WP_158773696.1\|1909559_1910024_-	Tellurite resistance TerB	A0A2I6PHY0	Pseudomonas_phage	2.2e-08	33.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047025

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection