CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047028	Formosa sp. L2A11 chromosome, complete genome	3 crisprs	RT,cas3,DEDDh,csa3,WYL	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047028_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047028_1

57507-57608

Unclear

Consensus_repeat	Method
ACATTAACTTTAATGGTGTGAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047028_1

>merge|NZ_CP047028|1|57507-57608|CRISPRCasFinder
ACATTAACTTTAATGGTGTGAACTCTCATGAAGTCAACAATAATGTGAGATAAACTACCGTATTAAAAATTATTCACAACATTAATTTTAATGGTGTGAACT

>NZ_CP047028|1|1|57507-57608|CRISPRCasFinder
ACATTAACTTTAATGGTGTGAACT	CTCATGAAGTCAACAATAATGTGAGATAAACTACCGTATTAAAAATTATTCACA
ACATTAATTTTAATGGTGTGAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047028.1\|WP_159021263.1\|61184_61472_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047028.1\|WP_159024186.1\|52265_53012_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP047028.1\|WP_159021258.1\|57925_58513_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047028.1\|WP_159021255.1\|53086_53812_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047028.1\|WP_159021252.1\|47637_48933_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238863
NZ_CP047028.1\|WP_159024185.1\|51577_52264_+\|RNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP047028.1\|WP_159021254.1\|50710_51529_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NZ_CP047028.1\|WP_159021251.1\|46195_47638_+\|lipase	unknown	unknown	gnl\|CDD\|238863
NZ_CP047028.1\|WP_159021250.1\|44633_46058_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|273233
NZ_CP047028.1\|WP_159021256.1\|53821_54355_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047028.1\|WP_159021264.1\|61835_62156_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047028.1\|WP_159021259.1\|58613_58823_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047028.1\|WP_159021260.1\|58837_59506_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047028.1\|WP_159021253.1\|48925_50584_+\|MBOAT-family-protein	unknown	unknown	gnl\|CDD\|224610
NZ_CP047028.1\|WP_159021262.1\|60243_60633_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047028.1\|WP_159024187.1\|64171_64786_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224684
NZ_CP047028.1\|WP_159021265.1\|62618_63575_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047028.1\|WP_159021257.1\|54917_56426_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP047028.1\|WP_159021266.1\|64874_65102_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047028.1\|WP_159021261.1\|59590_60160_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047028.1\|WP_159024186.1\|52265_53012_-\|histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	9.18145e-37
NZ_CP047028.1\|WP_159021252.1\|47637_48933_+\|hypothetical-protein	gnl\|CDD\|238863	cd01825, SGNH_hydrolase_peri1, SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	5.45291e-34
NZ_CP047028.1\|WP_159021253.1\|48925_50584_+\|MBOAT-family-protein	gnl\|CDD\|224610	COG1696, DltB, Predicted membrane protein involved in D-alanine export [Cell envelope biogenesis, outer membrane].	3.1556e-65
NZ_CP047028.1\|WP_159024185.1\|51577_52264_+\|RNA-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.48282e-58
NZ_CP047028.1\|WP_159021254.1\|50710_51529_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	1.64834e-166
NZ_CP047028.1\|WP_159024187.1\|64171_64786_+\|hypothetical-protein	gnl\|CDD\|224684	COG1770, PtrB, Protease II [Amino acid transport and metabolism].	0.00602635
NZ_CP047028.1\|WP_159021257.1\|54917_56426_+\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	3.48466e-28
NZ_CP047028.1\|WP_159021250.1\|44633_46058_+\|L-serine-ammonia-lyase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP047028.1\|WP_159021251.1\|46195_47638_+\|lipase	gnl\|CDD\|238863	cd01825, SGNH_hydrolase_peri1, SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	1.60473e-22

>NZ_CP047028.1|WP_159021257.1|54917_56426_+|recombinase-family-protein
MEHAVAYLRVSTEEQSLDRQYEEVKVFAESKNLKLVKIFEDKISGSKTKASDRKGFNLMEKHLNKNADIKHILVLEISRLGRKNYDIQTVIEKYIELGVNIHIKDLGQSTLDEKGNRNLASELIISMLGIMAGNESRLLSDRIKSGKMSRARQNKGFNSKIIGYKKGEDETPIIDEEQAPLIRRIFELACQDMGMRSISSVIQSEFGQKFAMGTLGGIIKNTFHKGERKYNDLILEVPAIVSPEIWDKANKLIQSRSKYARRTIVNPNIVQGKISCGECGNILHQKVIPDARLNQFICSNDDCKNSINRPWLFTMVKLAVEEHGKQTRDKHAIENYKNKISSNKDIINLNKLEIKKREKKLSKIRLMYVDDEFTKEEYQELTKDVKDEIKSLTTRINTLNDEITAYKNALTNPIEHFSNDYTVLKDEIKDIVHKVEIYKDRVTINLFGHRIYDLQKPNSSKLGWMSRKIKEGIEIKLELPLRKPISDEQVELMKDDYIRNLK
>NZ_CP047028.1|WP_159021256.1|53821_54355_-|hypothetical-protein
MKKLVFVLFGVLIGVLGSHLIEQSRPDSEMKDKVEHVAKKPNGIITKDRAKELSAGYDSRYKLISNSIDRDDNRSVWFSIAEMEGFLGYTQYEAQNLLDKKYTVNGIRVYLAAYPDKNTDQAKAGYTTVFMVPTYDATISKSSTLPLNTALKIADVPEGSPLNEGEIGDPPSSAYPN
>NZ_CP047028.1|WP_159021255.1|53086_53812_-|hypothetical-protein
MDDFLIKNYSVLTKAFEYAALITGLLTYRKFKNTPIKYFILFILYTVLVEMGGSVPRQLYPGGLLENYEYLLAYKFFFSNYWWYGLFWTIGSVLFWSFFYQQIIHIKSYRTILNISTYIFVVCISIYTIMHIDQFFKTVLTFNKIFGSIIILMAIVLYFLNVLQSDIILSFYKSIYFYISMILFFWWIITMPLYFYQKFVFVDTTALINLLKLTRLFANVLMYGTFVLALAFCKPEKSLRV
>NZ_CP047028.1|WP_159024186.1|52265_53012_-|histidine-kinase
MICVLIILVGVLILFFLVFQKRKNKLLQEKLKQQQLFEEEIVKTQIEIQEEILKNIGQDLHDNVGQLLSVANMQLSMLAQQVAPELQPSFTESKNLVKESLQELRSLSKSLNSDVIVYRGLEESVKTEIHRFNKLALINAELTVDGDSSHLKKGKDSIILFRILQEFFSNTIKYSEAALLDVNINFKPEYVLITVNDDGVGFNVNTIEKGSGLINMQSRAVLIDAKFSLTSKLKEGTHLEIKYKYRSN
>NZ_CP047028.1|WP_159024185.1|51577_52264_+|RNA-pseudouridine-synthase
MLSNKSNLQILFEDNHIIVINKRAGDLVQGDKTGDKPLSDVVKEYIKVKYDKPGNVYLGVVHRLDRPTTGLVIFAKTSKALTRLNAMFVKKEVNKTYWALVHNAPPKEKDTLVNWLKKNPKNNKSTAYIKEIKDSKKAILHYTLLKKLDRYILLEIELETGRHHQIRCQLSNMGCIIKGDLKYGADRSNKDASIHLHARHIQFVHPVTKEDIYITAPLPKDPVWDACL
>NZ_CP047028.1|WP_159021254.1|50710_51529_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MSAAQKDYKKVTVKTLSDMKANGEKISMLTAYDYTMATIVDGAGLDVILVGDSASNVMAGYQTTLPITLDQMIYHASSVVRGVNRALIVVDLPFGSYQSDPKEALRSAIRIMKESGAHSIKVEGGKEIKESIKRILNAGIPVMGHLGLTPQSIYKFGTFTVRAKEEEEAKKLKQDALMLQKAGCFAIVLEKIPAKLAKEVAESLTIPVIGIGAGNGVDGQVLVLHDMIGMTKEFHPRFLRRYLNLYEDMTNALSQYVTDVKSVDFPSEDEQY
>NZ_CP047028.1|WP_159021253.1|48925_50584_+|MBOAT-family-protein
MNRLYDIFTFSEDYPLIFTQVNFWIFFAVSYFIFALVNKKIQLRNSYLFLISLFFYYKTSGLYIGILIFSTLVDFFIGKTIYKSEGKNKRLALVTLSVFINLFVLCYFKYAYFFTDAFNSLFSTNYEVFNLLAQWGNSFNDQNYFTVDKIILPVGISFYTFQTISYSVDIYRKKLKPLHSILDFGFFVSFFPQLVAGPIVRAESFVPQITKPTVITKHHFNTGTYLILKGLIKKMLFADFIAMHFLDRVFDTPEMFSGFANIMAMIGYSLQIYGDFSGYTDIAIGLALLMGFELPVNFNSPYKAINAGDFWKRWHISLSTWLRDYLYIPLGGNRKGSYASFIILSIILLGCMIAFRNMIVVFSILTISFTLFIISLYNYKVRNHINTNINLMLTMLIGGLWHGAAWKFVIWGGLNGLGIVVYKFWRKISPYEFKNQWYVRAWKILITFIFITFTRIYFRGESMGHISRWFSQVAHNMDWAHAIDLLVHYQAVFWVMALGYISHWLPQNVKNDIEAFYGKSPVFVKIILGACVGIMCYQAYSSDFQPFIYFQF
>NZ_CP047028.1|WP_159021252.1|47637_48933_+|hypothetical-protein
MKFKILVLSLLMSMPLFAQDYILDSITPKYGHLINFEANTFQYASESPYFKKLFNDLDSVYAGKKKNIHVFHIGGSHIQADIYSNKIRTYLQNMNDVSLGQRGFVYPYHLAHTNNPTNYRIEADKSQWQGYRCSVRKDSVAWGLSGVSAAFRGTEDKIYVKANYRNYTKKPYTFNKLRVFYNTWKEDYNLNISDSTLVSSDTINYDGMYKEYRFNRTVDSVTLDLKIKDSTSVSPEFLLMGMEFMNDDPGIEYTTIGVNGASFYWYERAAYFEKQLQLYKPDLFIISIGTNDAYMPKKDFNAEEFRAYYESFIQMIQRANPECAILLTVPNDDYYKRSYANPNTATQQSIILELTRKYKMAVWDLYSIMGGLGSSNNWYKAKLMPSDRIHFTNLGYSIKADLFIKALVDAWAESTGKDKTLLLKHFKNLDE
>NZ_CP047028.1|WP_159021251.1|46195_47638_+|lipase
MFGATYFSTSKTLPNGKSEEGITLLGQTIKYPTTASFLLTPKAETTKSKIKTVDSIVNNIEVIIEEEEEDVFVETEKKDTVPKIPNLSKIDTSKIERISYPKNKDAFLSHLKSQLTASTCRIIHYGDSQIEGDRMSGYIRNKLQNLYGGNGPGFTPIAQVYDNISAVVIASNNWTRHAIFDRRAEKFAHKKYGAYTTFSRFTPYYNIIADSINTDTLQLTKAKITVKPSVKTYRRMRKFTNIGFHYGNAQLPITVKVFADGTLIKEGVLIADGEYHDFKIKLAKTPNALTFELEGKMSADFYGLTLDGDNGILLDNVAMRGSAGTVFAGLNSINFSQMYNELDPKVLIFQYGGNSVPYVKDSLEVEQYVGYLKNHINWLRRKTNDASVIYIGPADMTTTENGQMKTYALLPYLINRLQDMCKNNNVAYWNTYNAMGGENSMQYWVDQKLAASDYTHFSLSGTRIISELFYLSLYMDLTNK
>NZ_CP047028.1|WP_159021250.1|44633_46058_+|L-serine-ammonia-lyase
MEIISVFDMLKIGVGPSSSHTLGPWRAAERWILELKSANKFQKVEKITIDLYGSLSLTGKGHATDLAIMLGLTGADPEYIPTDSINSIITSIKTDHILHFNNEKEIAFNPETDIVYNKKFLPFHSNGLSFSATINGRKSKSTFYSIGGGFVVKEERKSAKANKIIFYCTLPYPVDSGVKLLDFCNQLNLPISGVVLENEKSLRDPEVIDFELRRIWNTMLECMYTGCHTEGNLPGGLNVRRRAYDMHKKLNGDLPYSDPEEWLQTIRTTEVKFRQILKWVSCFALAVNEVNASLGRVVTAPTNGSAGVIPSVLMYYLVIENHEANFEHIKKFLLVAGEIGSLFKKGATISAAMGGCQAEIGVSSAMAAGALTELLGGTPEQVLVAAEIAMEHHLGLTCDPIGGLVQIPCIERNSMGAIKAINAAELALETDPNNVKVPFDKVISTMWETAKDMNSKYKETSEGGLAIGVNLSDC
>NZ_CP047028.1|WP_159021258.1|57925_58513_+|hypothetical-protein
MNIKNKKRPPKQNFDIEFFKIDDSNLTRIEQSILKTILNCHKANCKREYENILNDDLCKFSKISENSMLKYRKSLEQKKFFTIEKKRVGKSFVLIYKPNWSKLERLNFIKTHTKSEFSPVFKKKDSEPSLKNGDELTLENTKDFDDEKTYNVKIISNSSNSNQMKTMYGRDIKRALKAEDNRLKYGERENIYKLK
>NZ_CP047028.1|WP_159021259.1|58613_58823_+|hypothetical-protein
MQNIILNENETSVYLAISNQLERPNRFQQISDEKIIEESGIEPDGLIPIIKKLVLNGFIQKENGCYRVE
>NZ_CP047028.1|WP_159021260.1|58837_59506_+|hypothetical-protein
MSNEIQLKKQIPLMTNDSLKAKLESTCNIILEKIDTAVKRSKTDLGIDLSNTNYTKGFIKKYSKSEDSENIEFQNELLFMKFEKELSNFQNDYPSVIKSKALEMFSTDEDREKAKSIINLYASINHNIKQLRIDGLDLDTFILGNEFIWNTKIDTKIRKATTTYCKSQKQVDLLGVAEKISEIILHAQKIGLLANDRLGVNGSNLVDIDTGEIRYNVIGSIE
>NZ_CP047028.1|WP_159021261.1|59590_60160_+|hypothetical-protein
MSNCNGLLTKGIGRDCDTVNAAVGVDKDLILVNYEDFDRELTFNTREITDSNKNLGGLTAIELKQGAVQYIFEGTDYSVIPNITSEVKDDGDSWFLHSLAFTVYSKKADDRKTLESLAESRVIAIAVDRSTGLYELFGADQGLKLSGLERAYTGAQNSNFYTITIATPDVAVIRESTIGELAVGVNTAV
>NZ_CP047028.1|WP_159021262.1|60243_60633_+|hypothetical-protein
MKRNDYRKRLSKEAREDYYIITNKLQQVLKNFDFIAKKDVRIFIESNGDYVSLNKFPYEPYNEVLLIFAQIEKDKLPRNKQVDYKKFRASVMNKVIMYIHKGKKERVPIYRPRRKRIGTEKINIGEYLN
>NZ_CP047028.1|WP_159021263.1|61184_61472_+|hypothetical-protein
MSEEKKSVGRPRKYDRAPDDVLIRRKMTGVLSNYFTSGQFVEDMELGKAGDKRMKIHLDLLPYVLSKKESIKSLVQGLDEKETDDLVKRIKAEIK
>NZ_CP047028.1|WP_159021264.1|61835_62156_+|hypothetical-protein
MTPEQSRLVNLAVGLINKTKPINSAPKEDNSLDERQKRFLDIVGKDLQEDEREQLETKIKSNPEVMGNYQKRNMLKDGKTNRLLNSRHFAFNVDYPSRGFKDVIAK
>NZ_CP047028.1|WP_159021265.1|62618_63575_+|hypothetical-protein
MSNEVIRFHFYSLRFTPYSDLTPEHTSSSILKDVIMFLTNELKDGKGYLIDKNRNRQKDGPRELFMTSAVFMHKEKRIRCSFALLRSGRIPKIKPADKFELVPIETLGSIAEETHFYIDYSRNYAVVCIEYNHYGPRMSDVEYYLRNVAKDKLKLSKALEVNLYMTNTIDKTLENLRNVLNMQIKIQPNKIPQMDNDIKGQFFTGINTIGNRLKPNFIKVETYFQTPGSNVESKGLNKEANSMVETLLNKFKTRPFNIDCFDDFVVKYEDKEGNEEIFNLLKGKKELEYDVDMKAISKKRQLYELVEKDFDEFMITFN
>NZ_CP047028.1|WP_159024187.1|64171_64786_+|hypothetical-protein
MSNITVTKSQFNDGYVDSGGFIKFKTASQSFIINLYPNKHPFFTEFSRLCIRPTPHSVECGVGILEAIKDEIENGWLNTIKGIVSAEIFTDFIEAAEHLLEQDYKDPAAVMIGSVLEEHLRQLCYKNGIDTTVEKHGKQIPKRADLLNAELSKSFIYNKLDQKNIIAWLDLRNHAAHGNYSNYTKDQVKIMLNGVMDFIARNGI
>NZ_CP047028.1|WP_159021266.1|64874_65102_+|hypothetical-protein
MTLLELGSKLRENYDKAQKGNKALAIYLFGIQYAKEIRGSEYSILDILKQANLPKGYNSIINASIKLSDYVTLNK

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047028_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047028_2

675720-675865

Orphan

Consensus_repeat	Method
ATGACGTACTTTCATTTTCCCGTCACCCTGAATTTATTTCAGGGTCACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047028_2

>merge|NZ_CP047028|2|675720-675865|CRISPRCasFinder
ATGACGTACTTTCATTTTCCCGTCACCCTGAATTTATTTCAGGGTCACACATACAACTCATCTATTCTAAATAATGAGATAAAGAAACAAGTTCTGCATGACGTACTTTCATTTTCCCGTCACCCTGAATTTATTTCAGGGGTCAC

>NZ_CP047028|2|2|675720-675865|CRISPRCasFinder
ATGACGTACTTTCATTTTCCCGTCACCCTGAATTTATTTCAGGGTCACA	CATACAACTCATCTATTCTAAATAATGAGATAAAGAAACAAGTTCTGC
ATGACGTACTTTCATTTTCCCGTCACCCTGAATTTATTTCAGGGGTCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047028.1\|WP_159021750.1\|678781_679024_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047028.1\|WP_159021753.1\|682987_683881_-\|cysteine-synthase-CysM	unknown	unknown	gnl\|CDD\|236972
NZ_CP047028.1\|WP_159021749.1\|677825_678782_-\|methylenetetrahydrofolate-reductase-[NAD(P)H]	unknown	unknown	gnl\|CDD\|273212
NZ_CP047028.1\|WP_159021751.1\|679036_681718_-\|methionine-synthase	unknown	unknown	gnl\|CDD\|236539
NZ_CP047028.1\|WP_159021747.1\|675947_676697_-\|DUF2807-domain-containing-protein	unknown	unknown	gnl\|CDD\|371327
NZ_CP047028.1\|WP_159021755.1\|684733_685786_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566
NZ_CP047028.1\|WP_159021739.1\|664589_664916_-\|pyrophosphatase	unknown	unknown	gnl\|CDD\|212138
NZ_CP047028.1\|WP_159021754.1\|683867_684641_-\|serine-acetyltransferase	unknown	unknown	gnl\|CDD\|200082
NZ_CP047028.1\|WP_159021746.1\|674790_675687_+\|gliding-motility-associated-ABC-transporter-ATP-binding-subunit-GldA	unknown	unknown	gnl\|CDD\|132561
NZ_CP047028.1\|WP_159021745.1\|673674_674502_-\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|270349
NZ_CP047028.1\|WP_159021738.1\|663347_664583_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|238797
NZ_CP047028.1\|WP_159021742.1\|669521_670472_-\|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl\|CDD\|234631
NZ_CP047028.1\|WP_159021752.1\|681743_682745_-\|5-methyltetrahydrofolate--homocysteine-methyltransferase	unknown	unknown	gnl\|CDD\|236539
NZ_CP047028.1\|WP_159021756.1\|685825_686605_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|381169
NZ_CP047028.1\|WP_159021741.1\|669056_669509_-\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
NZ_CP047028.1\|WP_159024216.1\|667090_668821_-\|DUF3857-domain-containing-protein	unknown	unknown	gnl\|CDD\|379003
NZ_CP047028.1\|WP_159021744.1\|672529_673678_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181749
NZ_CP047028.1\|WP_159021743.1\|670572_671655_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|273577
NZ_CP047028.1\|WP_159021748.1\|676700_677792_-\|acyloxyacyl-hydrolase	unknown	unknown	gnl\|CDD\|378181
NZ_CP047028.1\|WP_159021740.1\|665060_667082_-\|DUF3857-domain-containing-protein	unknown	unknown	gnl\|CDD\|379003

Protein	Function_ID	Function_description	E-value
NZ_CP047028.1\|WP_159021753.1\|682987_683881_-\|cysteine-synthase-CysM	gnl\|CDD\|236972	PRK11761, cysM, cysteine synthase CysM.	0
NZ_CP047028.1\|WP_159021749.1\|677825_678782_-\|methylenetetrahydrofolate-reductase-[NAD(P)H]	gnl\|CDD\|273212	TIGR00676, 510-methylenetetrahydrofolate_reductase., 5,10-methylenetetrahydrofolate reductase, prokaryotic form. The enzyme activities methylenetetrahydrofolate reductase (EC 1.5.1.20) and 5,10-methylenetetrahydrofolate reductase (FADH) (EC 1.7.99.5) differ in that 1.5.1.20 (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while 1.7.99.5 (assigned in many bacteria) is flexible with respect to the acceptor; both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as 1.5.1.20 and 1.7.99.5, this model describes the subset of proteins found in bacteria, and currently designated 1.7.99.5. This protein is an FAD-containing flavoprotein. [Amino acid biosynthesis, Aspartate family].	2.66888e-100
NZ_CP047028.1\|WP_159021751.1\|679036_681718_-\|methionine-synthase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
NZ_CP047028.1\|WP_159021747.1\|675947_676697_-\|DUF2807-domain-containing-protein	gnl\|CDD\|371327	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain. This bacterial family of proteins shows structural similarity to other pectin lyase families. Although structures from this family align with acetyl-transferases, there is no conservation of catalytic residues found. It is likely that the function is one of cell-adhesion. In Structure 3jx8, it is interesting to note that the sequence of contains several well defined sequence repeats, centred around GSG motifs defining the tight beta turn between the two sheets of the super-helix; there are 8 such repeats in the C-terminal half of the protein, which could be grouped into 4 repeats of two. It seems likely that this family belongs to the superfamily of trimeric auto-transporter adhesins (TAAs), which are important virulence factors in Gram-negative pathogens. In the case of Parabacteroides distasonis, which is a component of the normal distal human gut microbiota, TAA-like complexes probably modulate adherence to the host (information derived from TOPSAN).	2.99595e-36
NZ_CP047028.1\|WP_159021755.1\|684733_685786_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	4.74377e-64
NZ_CP047028.1\|WP_159021739.1\|664589_664916_-\|pyrophosphatase	gnl\|CDD\|212138	cd11531, NTP-PPase_BsYpjD, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain putative pyrophosphatase YpjD from Bacillus subtilis and its bacterial homologs. This family includes a putative pyrophosphatase Ypjd from Bacillus subtilis (BsYpjD) and its homologs. Although its biological role has not been described in detail, BsYpjD shows significant sequence similarity to the dimeric 2-deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase or dUTPase) and NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, BsYpjD contains a single MazG-like domain.	3.80749e-38
NZ_CP047028.1\|WP_159021754.1\|683867_684641_-\|serine-acetyltransferase	gnl\|CDD\|200082	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase. Cysteine biosynthesis [Amino acid biosynthesis, Serine family].	4.58621e-55
NZ_CP047028.1\|WP_159021746.1\|674790_675687_+\|gliding-motility-associated-ABC-transporter-ATP-binding-subunit-GldA	gnl\|CDD\|132561	TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.	4.22174e-156
NZ_CP047028.1\|WP_159021745.1\|673674_674502_-\|prephenate-dehydratase	gnl\|CDD\|270349	cd13631, PBP2_Ct-PDT_like, Catalytic domain of prephenate dehydratase from Chlorobium tepidum and similar proteins, subgroup 2; the type 2 periplasmic binding protein fold. Prephenate dehydratase (PDT, EC:4.2.1.51) converts prephenate to phenylpyruvate through dehydration and decarboxylation reactions. PDT plays a key role in the biosynthesis of L-Phe in organisms that utilize the shikimate pathway. PDT is allosterically regulated by L-Phe and other amino acids. The catalytic PDT domain consists of two similar subdomains with a cleft in between, which hosts the highly conserved active site. In gram-postive bacteria and archaea, PDT is a monofunctional enzyme, consisting of a catalytic domain (PDT domain) and a regulatory domain (ACT) (aspartokinase, chorismate mustase domain). In gram-negative bacteria, PDT exists as fusion protein with chorismate mutase (CM), forming a bifunctional enzyme, P-protein (PheA). The CM in the P-protein catalyzes the pericycle isomerization of chorismate to prephenate that serves as a substrate for PDT. The CM and PDT are essentail enzymes for the biosynthesis of aromatic amino acids in microorganisms but are not found in humans. Thus, both CM and PDT can potentially serve as drug targets against microbial pathogens. The PDT domain has the same structural fold as the type 2 periplasmic binding proteins (PBP2), many of which are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.35667e-85
NZ_CP047028.1\|WP_159021738.1\|663347_664583_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|238797	cd01556, EPSP_synthase, EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.	1.86748e-104
NZ_CP047028.1\|WP_159021742.1\|669521_670472_-\|ribosome-small-subunit-dependent-GTPase-A	gnl\|CDD\|234631	PRK00098, PRK00098, GTPase RsgA; Reviewed.	6.12396e-164
NZ_CP047028.1\|WP_159021752.1\|681743_682745_-\|5-methyltetrahydrofolate--homocysteine-methyltransferase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
NZ_CP047028.1\|WP_159021756.1\|685825_686605_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|381169	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT). SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.	1.30974e-100
NZ_CP047028.1\|WP_159021741.1\|669056_669509_-\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	4.38445e-86
NZ_CP047028.1\|WP_159024216.1\|667090_668821_-\|DUF3857-domain-containing-protein	gnl\|CDD\|379003	pfam12969, DUF3857, Domain of Unknown Function with PDB structure (DUF3857). This family is based on the first domain of the PDB structure Structure 3KD4(residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase (3ebi, Z=10, rmsd 3.6A for 152 CA, seq id 12%), despite lack of any significant sequence similarity.	7.56581e-11
NZ_CP047028.1\|WP_159021744.1\|672529_673678_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181749	PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional.	2.26727e-145
NZ_CP047028.1\|WP_159021743.1\|670572_671655_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|273577	TIGR01361, DAHP_synth_Bsub, 3-deoxy-7-phosphoheptulonate synthase. This model describes one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterized member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. [Amino acid biosynthesis, Aromatic amino acid family].	4.93897e-58
NZ_CP047028.1\|WP_159021748.1\|676700_677792_-\|acyloxyacyl-hydrolase	gnl\|CDD\|378181	pfam09411, PagL, Lipid A 3-O-deacylase (PagL). PagL is an outer membrane protein with lipid A 3-O-deacylase activity. It forms an 8 stranded beta barrel structure.	1.26649e-16
NZ_CP047028.1\|WP_159021740.1\|665060_667082_-\|DUF3857-domain-containing-protein	gnl\|CDD\|379003	pfam12969, DUF3857, Domain of Unknown Function with PDB structure (DUF3857). This family is based on the first domain of the PDB structure Structure 3KD4(residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase (3ebi, Z=10, rmsd 3.6A for 152 CA, seq id 12%), despite lack of any significant sequence similarity.	4.63943e-10

>NZ_CP047028.1|WP_159021746.1|674790_675687_+|gliding-motility-associated-ABC-transporter-ATP-binding-subunit-GldA
MSIKVEQLTKVYGTQKALDNITFSVGKPEIVGFLGPNGAGKSTMMKILTTYIDASSGEAEVNGFNIHTQSNQVQQSVGYLPEHNPLYLDMYVKEYLAFNADIYKVSKQRIAEVIALTGLTPEVHKKISQLSKGYRQRVGLANALLHDPEVLILDEPTTGLDPNQLVAIRELIKNIGKTKTVFLSTHIMQEVEAMCDRVIIINKGQIVADKTLKDLHTGNSQVIVVEFDFRIEDTFLLRLPHVTAVKNTYDFVYEITFSTTEDMRPKVFDFAHDNELKILQLNKKNESLEELFRELTHD
>NZ_CP047028.1|WP_159021745.1|673674_674502_-|prephenate-dehydratase
MAKTVSIQGIKGSFHHIVAKTYFDSDVEIDECMSFDKVVDNLITKKSDVAIMALENSIAGSILPNYALIDKYNLHIIGEHYLDIQHNLMAFPGQNIEDIKEVHSHPMALLQCKEFFKNYPHITLIEDKDTAETADRINKNKLQGVAAVASKIAAEIFDLEILVASIQTIKENETRFVIVKTKNSVIDKCDITKASLRFELDHKRGSLASVLNVLSDCRMSLTKIQSLPKIETPWQYAFFVDVTFSKYENFEKAKAILDIMAKEFKVLGEYKNAKL
>NZ_CP047028.1|WP_159021744.1|672529_673678_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MITVANRLQTVEEYYFSKKLREVNALKASGKPIINLGIGSPDLMPPQRVVNAITESFKQPNVHQYQSYQGLPELREAMCGFYKTQFHVDVNPASEILPLMGSKEGILHISMAFLNPGDEVLIPNPGYPTYASVTKLVEAKAVTYDLDEAHGWLPDLVALEQKDLSKVKLMWINYPHMPTGANATETLFEELVAFAKRNHILIVNDNPYSFVLNNNPKSILSVPGAKDVCVELNSLSKTFNMAGWRVGMVLGNADHISAILKVKSNMDSGMFYGIQKGAIEALKSTDKWFKDLNDAYQKRRELVWKLADLLDCTYDKNTSGLFVWSKLPEGVDAEAFIDKILYDKSIFITPGIIFGTQGKGYIRFSLCASEEDLQESINRIKS
>NZ_CP047028.1|WP_159021743.1|670572_671655_-|3-deoxy-7-phosphoheptulonate-synthase
MENKKELRTWLDDLQLDHPLVIAGPCSAETEEQVLKIAHELKDTDVSYFRAGIWKPRTRPGMFEGVGALGLKWLQRVKAETGMKIATEVANAAHVKLALEHDVDLLWIGARSTVSPFIVQEIADALKGTDKVVLIKNPVNPDLALWLGAVERLATADIKKLGVIHRGFSTYEKTKYRNTPEWQLAIELQSKFPDLPIINDPSHITGKRDMIFDVSQKALDLNFDGLMIETHYDPENAWSDAAQQVTPSVLVQIMKDLKIRKETDEEAEYNNALNTLRANIDVIDNQIIELLGKRMNVVDGIGTLKRQKNVSILQSKRWNEILGAMVLEGQDHGLSEEFILKMFKAIHQESINHQEKIIKK
>NZ_CP047028.1|WP_159021742.1|669521_670472_-|ribosome-small-subunit-dependent-GTPase-A
MTGTVYKSTGSWYTVKSHSGETYDCRIKGKFRLKGIKSTNPIAVGDIVDFEVETLDSVTTGVIHHIHDRKNYIVRKSVNLSKQTHIIAANIDQVFLLITINNPPTLTSFIDRFLVTAEAYSIKTVLLFNKIDVYDADTILEVRYLASIYRAIGYECIGISAETGKNIDKVKDLMLGKVSMFAGHSGVGKSTLVNALESTLDLKTKAISTQHMQGQHTTTFAEMFDLSFDARIIDTPGIKGFGVVDMEKEEVGDYFPEFFALKQDCKFNNCLHIEEPKCAVKAALDRDEIAFSRYRSYVQIIEGEDEHYRTDIWDKD
>NZ_CP047028.1|WP_159021741.1|669056_669509_-|D-tyrosyl-tRNA(Tyr)-deacylase
MKVVIQRVSEASVTIEGEVVANIQHGLLVLVGIVNNDTQEDILWLSKKIANLRIFEDENGVMNTSVIDAKGQVIVVSQFTLHAATKKGNRPSYIKAAKPDISIPLYTSFINQLEKDLDNKVQTGRFGADMKVKLLNDGPVTIIIDSKNKE
>NZ_CP047028.1|WP_159024216.1|667090_668821_-|DUF3857-domain-containing-protein
MLVKSHRIVTIYNETGDYKGQAYEYYDETTKIKTLEATVYNAAGEKIKRYKEKDFTDVAAADGISIYNDNRVKYLKYAAVEYPYTIDYISEVEHKMTAFVPSWSPLEDHYTGVIESSYQIFNETDVPLAIKEEHLEDYNIKKVGDYHYVAENLLAIKPETLSPDFYTYAPRVKVAMQTFDMKGVKGVNTNWTDFGKWMYNTLLVDTRTLPESVKTEILGLTKEAPTNIEKAKIVYQYLQQNTRYISVQVGIGGWKPMLAEDVDRLSYGDCKGLSNYTKALLDVVGVPSYYAVIYGGKNIRSFDRDFSATEGNHAVLTIPNGDDYIWLECTSQDTPFGYIANFTDDRDALIITPEGGKIIHTTVYDTKANVLATTADINLNLEGGFTSQVEMKSYGSQYRGSDGLEEETEKNQKLRFKNMWDNVNDLVVESIQFTNNKNEVVFTENVKVSAKSYASKTGNRLLLVPDVFNKLSHIPPRYSKRTMSLEIDRGFLDQDEYVFHLEAGLDVEALQSPVAIETKFGSYAMSIEDLGDGKLRYKRKLQLEKGTYPKEDYKAYRAFWSSISKHDNSKIVLLTK
>NZ_CP047028.1|WP_159021740.1|665060_667082_-|DUF3857-domain-containing-protein
MKNVFSLLCLLIISYTSAQDYKFGKISKAELKETANPKAQEAHATILYVNENVYFQYNPSEGFIVVKEVQKRIKIYDKEGVDWATEIVPFYDNGGSNVEELSELKGYTYYLKDGKIEKDKLDKDNIFKEETNQYWGQLKFTMPNITDGCIVEFRYRKESPFIALDDVDLQYDIPVKKLEFNARIPEYFYFNKYFNPKAKYTAKITETERNRVENITSKQRSGGGGFNSSTTSVDNSKWEFHETEFKADLVDVPALKEEPYVDNMDVYRANVKWEYAMYKGQDNSIKKYSTDWESVIKTIYDNSSFGGQLSKTGYFEKDLDALLANVTSSTERISLIYNFVKSKVAWNEYLGYYAENGVKKAYKDGSGNVGDINLMLTAMLRYAGLNASPVLISTKSNGIPLYPTRNGFNYVISAVEMLDNIILLDATYRYALPNVLPSRAINWQGRIVREHGGSAWVDLMSPTSGEENYTLQYKIKPDLAVQGRVFVKLENSSAMKFRSKYSNMGDDERLRNLEQDKGEIEISNYVVKNEDDLNSPSLQYSFSYTLENAVESIGDKLYVSPMLFYATTENTFKQEKRNFPIEFTYPNVYNYNVSIMLPEGYVVESMPESAKVQFNGGEGMFSFLTSGSSNMVVLKVSFQINRSFILAIDYDQFKQYFGMLVKKETEKMVLAKS
>NZ_CP047028.1|WP_159021739.1|664589_664916_-|pyrophosphatase
MNIEDAQLAVDSWIKEHGVRYFNELTNMAQLTEEVGEVARIIARRYGEQSEKESDKNKDLGEELADVVFVVLCLANQTGINLQEAFDKKLDVKTKRDHDRHHNNKKLK
>NZ_CP047028.1|WP_159021738.1|663347_664583_-|3-phosphoshikimate-1-carboxyvinyltransferase
MNITLEQSEIIQKPLNITITGSKSESNRLLVLQALFPNISLENVSNSDDSDVMQMALKSEDEIVDIHHAGTTMRFLTAYFSSREGKSVTLTGSKRMKERPIKILVDALRDLGADISYVENDGYPPIKISGKKITQNEVTLKANVSSQYISALLLIGSSLENGLKLTLDGEITSVPYIKMTLNLLRQLEIEAEFKGQTIIVQPKKEIVANQTLTVESDWSSASYFFSIVALSPIGTTITLSAYKETSLQGDSVLASIYKEFGVETTFENNTITLKKVKAVSKAHIIKLDLVNAPDIAQTIAVSCFGLGLSCDLSGLHTLKIKETDRLEALKTELGKLGGQVHVTDKTLVLEASNHINQDVAIDTYNDHRMAMAFAPLALCAKMRVNNAEVVSKSYPEFWIDLEKIGFKVVEN
>NZ_CP047028.1|WP_159021747.1|675947_676697_-|DUF2807-domain-containing-protein
MRKIITLLVALVVCACDSESASDCFQTSGETISKTIDIDAFEDILVNRNIELTIIQGDNLKAYVETGENLMNDVVVEVVDGELQLTDNNTCNLFRDYDPTKITITTPNLVQIRSSTQFEVKSEGVLTFDKLELLSEDFNASESFNVGDFRLELDVETLNVVSNNISVFYISGEANNLSVGFYAGSGRFEGANLIANTVDVYHRGSNDIIVNPQESLTGELVSTGDLIAKNRPEIVDVNVQYKGELLFED
>NZ_CP047028.1|WP_159021748.1|676700_677792_-|acyloxyacyl-hydrolase
MKQLFFFLCLVVSSVVFSQETLHSSYVDVNYFHGNIALHNNYILHLIKGHPEGAIISWNKKTFGDQAWEERYNYPDYGVSFSYQNLKNETLGNNYALYAHYNFYFLKRNLMLRIGQGLAYNTNPYDKYDNYKNTAFGSTILSSTYLMINYKRERIFDRFGLQAGLSLIHYSNANVVAPNGSINTVAFNVGVTYNLDEEDPEFIHSDVKEKFTEPIKYNIALRGGFNESDIIGMGQSAFYVISAYADKRLSRKSAVQFGTDFFFSKFLDDLIAYNVVAFPEENIDPDTDYRRIGLFAGHELFINKLSVETQVGYYVYYPYDFEGRTYLRIGLKRYFGEKWFGAVTLKSHGAKAECVEFGVGIRL
>NZ_CP047028.1|WP_159021749.1|677825_678782_-|methylenetetrahydrofolate-reductase-[NAD(P)H]
MKVTDHIKQANGKTLFSFEVIPPQKGKNIQDLYNNIDPLMEFNPPFIDVTTSREEYVYVDKGNGLLDKRITRMRPGTVGICASIMHKYKVDAIPHLLCGGFTKEETEYVLVDCHYLGLDNVVALRGDARKDESYFTATKGGNHFASELVEQISNLNQGKYLHDDIKVEHNYDFCIGVAGYPEKHMEAPSLNTDLKRLKAKVDAGADYVVTQMFFDNQKYFDFVKKARAIGITVPIIPGIKPLAVKRHLQILPQVFKIDLPEDLIDAVEGCKDNKAVREVGIEFAIQQSKELKEVGVPFLHYYSMGKSDNIKRIASAIF
>NZ_CP047028.1|WP_159021750.1|678781_679024_-|hypothetical-protein
MSKKFIEIHMGGHIIVHGFDADNKEITERVEASEFTKKIVAVSRIKSVSEDFILTDYSNGRLVYWEYQDDYKMIKKVLTK
>NZ_CP047028.1|WP_159021751.1|679036_681718_-|methionine-synthase
MSKNTKPKYLSLSGLEPLVVTPDSNFINVGERTNVTGSRKFLRLIKEEKFDEALDVARDQVEGGAQIIDVNMDEGMLDGAEAMVKFLNLIASEPDIARVPIMIDSSKWDIIEAGLQVVQGKSIVNSISLKEGEEAFVHHAKLVKRYGAAMVVMAFDENGQADSYQRRIDICKRSYDILVDKVGFPPQDIIFDPNIFPVATGMEEHRLNALDFFNATKWIRENLPYANVSGGVSNVSFSFRGNNVVREAINSAFLYHAIKHGLNIGIVNPTMLEVYDEIPKDLLEHVEDVLFNRKEDATERLLDFAETVKGDKKVDAAKVLEWRSYELQDRITHALVKGVDAFIIEDVEQARQESKRPIEVIEGHLMIGMNVVGDLFGSGKMFLPQVVKSARVMKKAVAYLQPFIEAEKDGKQEFAGKILMATVKGDVHDIGKNIVSVVLGCNNYEIVDLGVMVPPEKIIERAKAENVDVIGLSGLITPSLDEMVYLSKEMERQKFTIPLLIGGATTSRAHSAVKIAPNYTHAVVHVHDASRAVTVVGNLLNADNKVYKEQIREEYDKFREQFLKRGKKKNFVTIEDARKRKFKIDWKTSEIVKPNKLGVQVIQDFDLKKLEEFIDWSPFFRSWDLHGKYPDILKDEVVGEQAKELFADAKELLKRVFDEKLLGAKAIFGLFPANTVNDDDVEIYDENGKTKVTFLTLRQQLDKREGVPNFALADFIAPKDSGIEDYMGCFCVSTGFGTAELAKQFEADHDDYNSIMIKALADRLAEAFAEYLHKEIRTHYWGYDSNETLSNEDLIKETYKGVRPAPGYPACPDHLEKKTIWKLLNVKEEIGVEITDSLAMWPAASVSGYYFANKEAKYFGLGKITQDQLVDYAKRRGISNEEAEKWLSPTLAD
>NZ_CP047028.1|WP_159021752.1|681743_682745_-|5-methyltetrahydrofolate--homocysteine-methyltransferase
MSNIYKAIQQRILVLDGAMGTMLQRYNFSEADFRGERFKDYPSPLKGNNDLLSLTQPQAIADTHRKYFEAGADIVETNTFSGTTIAMADYNMQDLVYELNFESAKIAKQVAEEVTKQNPDKPRFVAGSIGPTNRTASLSPDVNRPEYRAVTFEDLRKAYKQQTEALLDGGVDMLLVETIFDTLNAKAALFAIDQVQEERGIKVPIMVSGTITDASGRTLSGQTVEAFLLSISHIPLLSVGFNCALGADQLQPYLQRLSNETEFFTSAHPNAGLPNAFGEYDQTAKQMQDLIEGYLKANIINIIGGCCGTTPEHIKLIAEVAAKYKPRQVVVGA
>NZ_CP047028.1|WP_159021753.1|682987_683881_-|cysteine-synthase-CysM
MIKTKSILDQIGHTPLIEASHLQSNPNVKLLLKLEGNNPGGSVKDRAAFNMISEALKRGDIKKGDTLVEATSGNTGIALAFIAPLLGVNMVLIMPENSTVERIKTMRAYGAELILTSKDVGIEGARDYAIKLHEEKGYFMLNQFSNPDNWKAHYKTTGPEIWEATQGKITHFVSAMGTTGTIMGVSTYLKEQNKNITIVGAQPADGAKIPGIRKWPEAYLPAIFDKSKVDQVVEVTAEEAKTTTQRLAKEEGVFAGMSSGGSVASALKVIKNIDSGIVVAIICDRGDRYLSSPLFEN
>NZ_CP047028.1|WP_159021754.1|683867_684641_-|serine-acetyltransferase
MIEDTKLQNKLVSKIYNVRLKESIATFTKNLFYVMFDDEPASELQELEHLFMHMGEKLEIEDAFKIWETFKFNLPNIRRRLDLDAVAIEQHDPAAKSLEEVYLAYPGFYAIAIYRLSHELHLLNVPIIPRMMSEYAHGITGTDIHPGAHIGDSFFIDHATGIVIGETSIIKNNVKIYQGVTLGGVQVKKSLSSTKRHPTIEDNVIIYANATILGGDVVIGADSIIGANVCVTVSVPERSILTYQKEFNIRPRRNDKN
>NZ_CP047028.1|WP_159021755.1|684733_685786_-|FAD-dependent-oxidoreductase
MIKTDILIIGAGPTGLFTVFEAGLLKLKCHLIDALPQAGGQCSELYPKKPIYDIPGFPDVLAGDLTKNLLEQGRQFEPGFTLGERAETIDKQEDGSFIVTTNKGTQHQAPIVAIAGGLGSFEPRKPLIENITKYEDHGVDYFIKDPEKYRNKRVVISGGGDSALDWSIFLADIASEVTLIHRRNEFRGALDSVEKVQELKLLGKINLVTPSEVVGVSGEDHIESVTVKKADEEFQIETDFFIPLFGLSPKLGPIGNWGLDIEKNAIKVDNALDYQTNIPGIYAIGDVNTYPGKLKLILCGFHEATLMCQSAYKRINPGKKYVLKYTTVSGIDGFDGTRKEAPKAVVKAII
>NZ_CP047028.1|WP_159021756.1|685825_686605_-|uroporphyrinogen-III-C-methyltransferase
MQKTNNIPKLTVVGAGPGDPDLISLKAIKAIESADVILYDALINVDLLKYASSAQEVIFVGKRKGCYAYQQEQINELIVEHAKRFGHVVRLKGGDPFVFGRGAEEIDYAKSKNLKVNVIPGMSSALSVPTNQGIPLTKRGVSESFWVITGTTKNHVISSDIALAAKSSATIVILMGMSKLSEIVQLFSNENKHDLPIAIIQNGTYANEKVGFGTINSIQNVVTEQGLSSPAIIVIGEVVRERTSLDRIKTELHDLKSVF

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Crispr_ID: NZ_CP047028_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047028_3

1216390-1216578

Orphan

Consensus_repeat	Method
GTTTAATGGTTGTCCTGATACTGACGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP047028_3

>merge|NZ_CP047028|3|1216390-1216578|CRISPRCasFinder
GTTTAATGGTTGTCCTGATACTGACGGTGATGGTATCGAAGACAGTAAAGATACTTGTCCTAACGAAGCTGGTACAGCTGAGTTTAACGGTTGTCCTGATACTGACGGAGACGGTGTAGCTGATCCTGATGATGCTTGTCCAACTGTTGCTGGATTAAAAGAATTAAACGGTTGTCCTGATGCTGATGC

>NZ_CP047028|3|3|1216390-1216578|CRISPRCasFinder
GTTTAATGGTTGTCCTGATACTGACGG	TGATGGTATCGAAGACAGTAAAGATACTTGTCCTAACGAAGCTGGTACAGCTGA
GTTTAACGGTTGTCCTGATACTGACGG	AGACGGTGTAGCTGATCCTGATGATGCTTGTCCAACTGTTGCTGGATTAAAAGA
ATTAAACGGTTGTCCTGATGCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047028.1\|WP_159022175.1\|1209018_1209507_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	unknown	unknown	gnl\|CDD\|235777
NZ_CP047028.1\|WP_159022172.1\|1205933_1206956_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|377232
NZ_CP047028.1\|WP_159022186.1\|1227795_1228206_-\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|376605
NZ_CP047028.1\|WP_159022171.1\|1205274_1205868_-\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_CP047028.1\|WP_159022179.1\|1217170_1219936_+\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|378929
NZ_CP047028.1\|WP_159022184.1\|1224411_1226577_-\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|224422
NZ_CP047028.1\|WP_159024239.1\|1205071_1205272_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047028.1\|WP_159022183.1\|1222071_1224120_-\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|223943
NZ_CP047028.1\|WP_007647175.1\|1207603_1207807_+\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|234901
NZ_CP047028.1\|WP_159022181.1\|1220633_1221095_+\|3-oxoacyl-ACP-synthase	unknown	unknown	gnl\|CDD\|334464
NZ_CP047028.1\|WP_159022174.1\|1207986_1208982_+\|beta-ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NZ_CP047028.1\|WP_159022180.1\|1219948_1220644_+\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	unknown	unknown	gnl\|CDD\|234603
NZ_CP047028.1\|WP_159022170.1\|1204311_1204698_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|366361
NZ_CP047028.1\|WP_159022177.1\|1211404_1212013_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
NZ_CP047028.1\|WP_159022182.1\|1221072_1222041_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP047028.1\|WP_159022188.1\|1229381_1230014_-\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
NZ_CP047028.1\|WP_159022173.1\|1207053_1207596_+\|DUF177-domain-containing-protein	unknown	unknown	gnl\|CDD\|376863
NZ_CP047028.1\|WP_159022187.1\|1228267_1229374_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|237026
NZ_CP047028.1\|WP_159022176.1\|1209580_1210936_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|236307
NZ_CP047028.1\|WP_159022185.1\|1226672_1227662_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845

Protein	Function_ID	Function_description	E-value
NZ_CP047028.1\|WP_159022175.1\|1209018_1209507_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	2.68434e-52
NZ_CP047028.1\|WP_159022172.1\|1205933_1206956_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|377232	pfam04166, PdxA, Pyridoxal phosphate biosynthetic protein PdxA. In Escherichia coli the coenzyme pyridoxal 5'-phosphate is synthesized de novo by a pathway that is thought to involve the condensation of 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose, catalyzed by the enzymes PdxA and PdxJ, to form either pyridoxine (vitamin B6) or pyridoxine 5'-phosphate.	1.19211e-126
NZ_CP047028.1\|WP_159022186.1\|1227795_1228206_-\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|376605	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL.	6.90995e-59
NZ_CP047028.1\|WP_159022171.1\|1205274_1205868_-\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	1.15754e-98
NZ_CP047028.1\|WP_159022179.1\|1217170_1219936_+\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	3.46837e-19
NZ_CP047028.1\|WP_159022184.1\|1224411_1226577_-\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|224422	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism].	0
NZ_CP047028.1\|WP_159022183.1\|1222071_1224120_-\|HAD-hydrolase-like-protein	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	1.64192e-11
NZ_CP047028.1\|WP_007647175.1\|1207603_1207807_+\|50S-ribosomal-protein-L32	gnl\|CDD\|234901	PRK01110, rpmF, 50S ribosomal protein L32; Validated.	1.18166e-18
NZ_CP047028.1\|WP_159022181.1\|1220633_1221095_+\|3-oxoacyl-ACP-synthase	gnl\|CDD\|334464	pfam01272, GreA_GreB, Transcription elongation factor, GreA/GreB, C-term. This domain has an FKBP-like fold.	0.00330989
NZ_CP047028.1\|WP_159022174.1\|1207986_1208982_+\|beta-ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	1.62571e-169
NZ_CP047028.1\|WP_159022180.1\|1219948_1220644_+\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	gnl\|CDD\|234603	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional.	1.22057e-116
NZ_CP047028.1\|WP_159022170.1\|1204311_1204698_+\|VOC-family-protein	gnl\|CDD\|366361	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	2.12037e-07
NZ_CP047028.1\|WP_159022177.1\|1211404_1212013_-\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	2.63776e-105
NZ_CP047028.1\|WP_159022182.1\|1221072_1222041_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.96556e-64
NZ_CP047028.1\|WP_159022188.1\|1229381_1230014_-\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	1.8278e-87
NZ_CP047028.1\|WP_159022173.1\|1207053_1207596_+\|DUF177-domain-containing-protein	gnl\|CDD\|376863	pfam02620, DUF177, Uncharacterized ACR, COG1399. This family is nearly universally conserved in bacteria and plants except the Chlorophyceae algae. Thus far, mutantional analysis in bacteria have not established a function. In contrast, mutants have embryo lethal phenotypes in maize and Arabidopsis. In maize, the mutant embryos arrest at an early transition stage.It has been suggested that family members specifically affect 23S rRNA accumulation in plastids as well as bacteria.	3.30747e-17
NZ_CP047028.1\|WP_159022187.1\|1228267_1229374_-\|alanine-racemase	gnl\|CDD\|237026	PRK11930, PRK11930, putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional.	1.55339e-161
NZ_CP047028.1\|WP_159022176.1\|1209580_1210936_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|236307	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated.	0
NZ_CP047028.1\|WP_159022185.1\|1226672_1227662_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	4.0022e-171

>NZ_CP047028.1|WP_159022177.1|1211404_1212013_-|superoxide-dismutase
MAFELPKLQYAYDALEPNIDARTMEIHHTKHHQGYTTKLNGAIEGTDLAGKSIEDILTGLDMSNSAVRNNGGGFYNHSLFWEVMNPEGKGRLSGELKTAIEDAFESVDAFKQAFSNAAATQFGSGWAWLCVHKGGKVSVCSTPNQDNPLMPGVDCEGTPILGLDVWEHAYYLNYQNRRPDYINAFFNVINWNEVERRYAEAK
>NZ_CP047028.1|WP_159022176.1|1209580_1210936_+|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MFKKILIANRGEIALRVIRTCKEMGIKTVAVYSTADAESLHVKFADEAVCIGPPPSVDSYLKMSNIIAAAEITNADAIHPGYGFLSENAKFSKICEEHDIKFIGASADMISKMGDKATAKETMRAAGVPCVPGSEGIIPDFETCEAIAIETGYPVMLKATAGGGGKGMRGVFKPEDLKDAWDSARQEAKASFGNDAMYMEKLIEEPRHIEIQIVGDSSGKACHLSERDCSVQRRHQKLTEEVPSPFMTKKLRQAMGESAVRAAEYIKYEGVGTIEFLVDKHRNFYFMEMNTRIQVEHPITEQVIDFDLVREQILVAAGEPISGKNYTPNLHAIECRINAEDPYHDFRPSPGRITTLHAPGGHGVRLDTHVYAGYSIPPNYDSMIAKLITTAQTREEAISKMKRALDEFVIEGVKTTIPFHRQLMEHPDYVSGKYTTKFMEDFVMEKPPVED
>NZ_CP047028.1|WP_159022175.1|1209018_1209507_+|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein
MDLKDIQNLIKFVAKSGASEVKLETDDVKITIKTGGDEKGETTTYVQQIPVGAPVAQAPVMQPVVATTPEAAAAAAQSEADSKYITIKSPIIGTLYRKPSPDKPLFVEVGQTIHEGDVLCIIEAMKLFNEIESEVSGKIVKILVDDSSPVEFDQPLFLVDPS
>NZ_CP047028.1|WP_159022174.1|1207986_1208982_+|beta-ketoacyl-ACP-synthase-III
MGKITAAITAVGGYVPEDVLTNKMLESMVETNDEWIVSRTGIKERRILKEDGKGTSFLAIKAAQDLINKSGVDPKEIDLVIVATATPDMKAAATAAFTATEIGAVNAFSFDLEAACSSFLFGMSTASSYIESGRYKKILLIGADKNSSMINYKDRATCIIFGDGAGAVLFEPNEEGLGLHDEYLRSDGCGRDFLQATYGGSSFPLTSDALSEGKHYVFQDGKTVFKNAVSNMADVAVKILERNNLSKDEISWLVAHQANKRIIDATANRIDLDSEKVMTNIAKYGNTTSATLPLLLFDYEKQLKKGDKLVFAAFGGGFTWGSIYLTWAYNS
>NZ_CP047028.1|WP_007647175.1|1207603_1207807_+|50S-ribosomal-protein-L32
MAHPKRKISKTRRDKRRTHYKATAPQIATCPTTGEAHLYHRAHWHEGKLYYRGQVLIDNSEVEENLA
>NZ_CP047028.1|WP_159022173.1|1207053_1207596_+|DUF177-domain-containing-protein
MKLLKEFTIQFIGLKLGKHQFEYQIGQEFFTHFEYEDFNDANIHVDVVLEKKTTLLELHFEISGTVNVYCDVTNEPYDQPIQNEFDLVVNFGDEYNDDEIDMLIIPHGEYELNIQQYIYELIVLAVPSKHVHPGVEDGTLESEILDKLEELSPKIKEEKKDQEESDPRWNTLKKLLTDNK
>NZ_CP047028.1|WP_159022172.1|1205933_1206956_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MKKEENIIVGISIGDLNGIGGEIVLKTFEDPRILEFCTPVIFASVKVMSFLKGHFKMDINFNGINHINQIVIGKINVINVWKENVSINFGKEDFKIGAYAIKSLAAATSALKDGAIDVLVTAPINKHNIQSEDFKFPGHTDYLAQQLEGDSLMFMITDFLKVGLLTDHVPVSEIANHITPELIESKINTVYKSLQQDFQISKPKIAVLGINPHTGDNGVIGVEDDTVLRPTLAKIKESGKLVFGPYAADSFFGSNNYKNFDAIIASYHDQGLIPFKTLSFGEGVNYTAGLNKVRTSPDHGTAFEIAGKGIANEESFKEALFAGIQIFKHRLEYEELVKRV
>NZ_CP047028.1|WP_159022171.1|1205274_1205868_-|riboflavin-synthase
MFTGIIENLGRVTNLKSDQDNLHVTIESNLASELKIDQSVAHNGVCLTVVDIKDNTYTVTAIQETLNKTNLGSLQIDDLVNLERAMLLGNRLDGHIVQGHVDQTAKCIDFKETSGSWLFTFEYDKTLNNITIEKGSITVNGTSLTVVNSKRNQFSVAIIPFTFEHTNFKYFKIGDAVNLEFDVLGKYVKRLLEFDIK
>NZ_CP047028.1|WP_159024239.1|1205071_1205272_+|hypothetical-protein
MQNKYKFILLVFLLAGSMCFAQSGNNTPPTPSTQGAPTPPGAPVDGGLSLLIAAGAFYGIKKSLNS
>NZ_CP047028.1|WP_159022170.1|1204311_1204698_+|VOC-family-protein
MLAFEHFALNLKNPKEVSDWYCTHLQMKKVVDKDEAPFVTFLADSENRLVCELYYQPDFPITNFKKKHHLTFHFAFKTDDAETLKNKLIEEGATLIDDAKLTDGSHLVMLRDPWGLPLQLCERATPLV
>NZ_CP047028.1|WP_159022179.1|1217170_1219936_+|PD-(D/E)XK-nuclease-family-protein
MRTFIEEVIVNLQEKGLNLSELKFILPSKRAGTFLKHQLSRSTKQTMFAPEILSIEDFVESISGIKTVSNTELLFQFYHTYITLNTEAQPDSFEVFSKWAQILLQDFNEIDRYLIPQDKIFDYLSAIQELKHWSLETEKTEFVKNYLAFWNKLHTYYTHFTNHLLENNLGYQGLVYRQADAHVGEYVAENKIQHVFLGFNALNTAEESIIQHILEHTDALIYWDIDKTFYENPIHDAGLFTRQHAKKWTYFKTHPFNWITDNYKGEKNINIIGVPKNIGQAKYIGNILKDITKTKKNIESTAIVLGNEDLLLPVLNSIPDNIKKLNVTMGFPLKSIPLASLFESLFNLHKNNPKSFYYKEVISILSHQFIRPLFLQDDKDVATALIETIQTNNIVFLTQQHLVELCGSFKDVIALLFGSWSNNATKALERSKSLIFAIKDHLNIKKDEHILSLEYTYRFHELFNELERLNITYNYFQSISSLHQVYKELLSSETLDFQGEPLQGLQIMGMLESRVLDFDTVIISSVNEGVLPAGKSNNSFIPLDVKIENNLPTFKEKDAVYTYHFYRLLQRAKTVYIIYNTEPDALAGGEKSRFLTQLELENIHPLKYAIATPTVSLMEQKLKTVPKSPLVLKRLKEVAKRGFSPSSLTNFMRNPMDFYLQKVLKIQEYDEVEETVAANTLGTVVHNTLEDFYKPLQGSQLTVEHITEMKTKISSTVLHHFEETFNKGDISTGKNLISFEIAKRYVSNFINLELKEVKAGRVIKIIAIEADFKQVKINIPELDFPVTIGGKVDRVDEYDGTTRIIDYKTGKVNQSQVEIVDWDELTTDYTKYSKPFQILCYAFMMLSDGKLKFPLEAGIISFKNLNGGFLKFTKKDKQGYGANKITDINKDTIQLFEAQLKVLILDIFDAEKDFEEKEVSH
>NZ_CP047028.1|WP_159022180.1|1219948_1220644_+|monofunctional-biosynthetic-peptidoglycan-transglycosylase
MIKKLFRFLFKIFCWFVFCSFVLVLIYKYVPVPITPLMVIRSFENSENNIPKGWKHDWVPMDKISNPMQKAVICSEDQNFLNHNGVDFKAVQKAFIENLKGKRIRGGSTISQQTAKNVFLWPGRSWLRKGLETYFTVVIELCWSKQRILEVYLNSIEMGKSVYGCEAAATFWFKKPASALTTYQAAAIAAVLPNPRVYKANPASTYIQKRKVWIVKQMNFFGPLRFENNEK
>NZ_CP047028.1|WP_159022181.1|1220633_1221095_+|3-oxoacyl-ACP-synthase
MKNNSEIKQELLKCCDAFIEKRFANVQHNIAEVQEALTSETKSSAGDKHETGRAMLQLEREKFGVQLSEVNQVKQALSKINVLKQSEAVCLGSAVTTNASNYFIAISAGEIVVDKTKYFAIAPNTPIGLLLLSKRAGEVVTFRNQEFTILNVF
>NZ_CP047028.1|WP_159022182.1|1221072_1222041_-|ATP-binding-cassette-domain-containing-protein
MLQVQNISFGYDTKTILENISFSVKQGEQLSIIGESGSGKSTLLKLLYGTYDLPEGDVYWKEQAILGPKFNLVIGYDFMKYVSQEFDLMPFISVKENIGKFLSNFFPEEKDRRATELIELVDLVEFTDVKVKLLSGGQKQRVALARAIARQPEIILLDEPFSHIDNFQKQTLRRNLFKYLKEKNITCVVATHDREDVLPYADQMIVLNNGKIIAYDTPKNLYKTPEKPLIASFFDEFNTMKASDLALESSEETVFVYAHELELSKNADLKVKIKSNYFRGNIYLIEAEYRSKSIFLYHKTELKIDKNVMIKLTETAKKRLKS
>NZ_CP047028.1|WP_159022183.1|1222071_1224120_-|HAD-hydrolase-like-protein
MSNQNTKILFSDYYDTIIHRNVHPNYTLKLWAKYMIAELGLDISIDELYFIRQESLSHLCEKYKKNNVEIPYNILIDAVFIRLVNSNLIDFRKKDYFSYLFERIDFKTESSVQYLNKDVLNIIKAFKTEGGKVYLVSDFYGSKSLFEKLLDYHGILNIFDNIFSSSVLETSKHAGTIYKKVLDALSITNPSEVVMIGDNQRSDYDNAIKNGLNAYKLPHDKYLKKNKLNAIGSDLKNTKQVVNNIYNRSKKKDVMPFTQYIIYYHFFIERLYLKSKKEGIKNMFFLAREGQFLKKIFDSYQEFHLIDKHSKINTHYLKTSRQASIQINLEPLETEPFLYLKNKYPELSIEDFLIFFNCPEATQNTIITDLKLSSNVPIKNFFESPVFENLKQNKTFITFYKTHRETNKESFKAYINAFGVDIEKEGVCLVDIGWGGTMQESLFGFYNEQVPITGYYLGLRYIYNIQEKTKRDGLIFSILPFTSYTDYLLMANNQYYEQFSAANHGSAVEYTSEENYVVEKHNPEEKWLYENYIEKHQKQMLGFHQVLLKDLENICYDQKMIQHIISKIALKTGLFYNRKTLKFIENLNSGFYQNIGTNTVGLKYEKQELGSPISHLITFIKTPEVVFRYITKLKPVLYQKNKFLAFLTPSYFIYFYYLFNKFMRFSVLKPLFLLKSTYFKNN
>NZ_CP047028.1|WP_159022184.1|1224411_1226577_-|prolyl-oligopeptidase-family-serine-peptidase
MKKLIASLIILTLFNSCKNEQELKKNKNQIVNYPITKTSDTVDTYFGSEVKDPYRWLEDDKSPETEAWVQEENKVTYRYLNKIPFRNSIKERLSKLWNYEKIGAPFKEGKYNYFYKNNGLQDQYVIYRTLDNDNTEDVFLDPNTFSDNGTTSLGGLSFSKDGSIAAYAISEGGSDWRKIIIIDTETKAVIEDTLVDVKFSGMSWKGNEGFYYSSYDKPKGSQLSAKTDQHKVYYHKLGTNQSQDKLIFGGTPDQKHRYINANVTEDDHYLIITPRTSTSGNKLYIKDLTKPNSTFVPILEDTDSDTYLLDNVGSKLFLLTNLNAPNNKIITVDAANPTPEHWVDFIPETENVLTPSTGSHYIFANYMVDAVSQIKQYDYDGKLVRNIELPAIGTVNGFSGKKENETLYFTFSNYTTPPTSYAFKPETGKSEVYVKPKVDFDPNQYESKQVFYKSKDGTKIPMIISYKKGTELNGKNPTILYAYGGFNISLTPSFSIANAVWMEAGGIYAVPNLRGGGEYGKAWHDAGTKMHKQNVFDDFIAAAEYLIDNKYTSSKFLAIKGGSNGGLLVGATMTQRPHLMQVALPAVGVLDMLRYHTFTSGAGWAYDYGTSEDSKAMFEYLKGYSPVHNVKAGTKYPATLITTGDHDDRVVPAHSFKFAAQLQSKQKSGNPILIRIETDAGHGAGTPISKTIDQYADIFGFTLYNMGFDELPNSTETSVTK
>NZ_CP047028.1|WP_159022185.1|1226672_1227662_-|aspartate-semialdehyde-dehydrogenase
MKVAVVGATGMVGEIMLKVLAERNFPLTELIPVASERSVGKTISYKGEDYKVVGLADAVAMKPDVALFSAGGDTSLEWAPKFAEVGTTVVDNSSAWRMDPSKKLVVPEINANELTKDDKIIANPNCSTIQLVMALAPLHKKYKMKRVVVSTYQSVSGTGVKAVKQLENEIAGIEGEMAYPYPIGRNALPHCDVFLDNGYTKEEMKLALEPQKILSDTSFSVSATAVRIPTAGGHSESVNVEFENDYDLADVRKLLSETPGVIVQDNTDTNTYPMPIYAHGKDEVFVGRIRRDETQKNTINMWIVADNLRKGAATNTIQIAEYLIENKIL
>NZ_CP047028.1|WP_159022186.1|1227795_1228206_-|large-conductance-mechanosensitive-channel-protein-MscL
MAFFKDFKSFLLKGDIVNLATAVIVGGAFGKIVTSFTKDIIMPPIGMLLGDVNFADLKYILKEGATNAAGVEVPAVSINYGNFLQMVIDFIIIGLCIFMVLKAYEKSKKKEEAAPAAPAGPTQEELLSEIRDLLKK
>NZ_CP047028.1|WP_159022187.1|1228267_1229374_-|alanine-racemase
MLKAQETLLEIDLKALEHNVTYLKSIIDSSTKFMAVVKSYAYGNDAVEIAKHLETLDVDYFAVAYTYEGEQLRTGGITKPILVLHAQSVYFNTLIENCLEPNLYSFKVLKEFITTAEGLNQKQYPIHLKFNTGLNRLGFLESDIPEIITILKNTDAIKVTSLFSHLGASEDLNENEFTLSQINTFKSISETFLEKLSYKPLLHICNTSGIINYPEAHFNMVRSGIGMYGFGNSEEENTHFKPITTLKTVISQINHIPKGQSVGYNRGYICDAPLVTATLPLGHADGIGREYGNGKGFVAINEQKAPIVGNTCMDMIMVDITNIDCQEGDEVIVFGDYPTAEEFAATANTISYELLTGLSQRIKRIILR
>NZ_CP047028.1|WP_159022188.1|1229381_1230014_-|thymidine-kinase
MFLENTVNHKEQFGWIEVICGSMFSGKTEELIRRLKRAQFAKQKVEIFKPSVDIRYNEEMVVSHDANEIRSTPVPAAANIPILADGCEVVGIDEAQFFDDEIVRVCNDLANKGIRVIVAGLDMDFKGNPFGPMPNLMATAEYVTKVHAICTRTGNLAQFSYRKSQSDALVLLGETEEYEPLSRGAYYKAMRNEKANNTNNNKTDNTDLNF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

296230 : 370594

Staphylococcus_phage(13.33%)

integrase,transposase

attL 337511:337550|attR 368644:368683

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159021447.1\|296230_297466_+\|integrase	tyrosine-type recombinase/integrase	H7BUI8	unidentified_phage	3.0e-36	41.5
WP_159021448.1\|297472_298102_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_159021449.1\|298538_299384_+	hypothetical protein	NA	NA	NA	NA
WP_159021450.1\|299685_299970_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_159021451.1\|299973_300726_+	hypothetical protein	NA	NA	NA	NA
WP_159021452.1\|300709_301372_+	ATPase	NA	NA	NA	NA
WP_159021453.1\|301481_302114_-	N-acetylmuramoyl-L-alanine amidase	A0A067ZJB6	Vibrio_phage	2.2e-19	37.4
WP_159021454.1\|302302_302590_+	hypothetical protein	NA	NA	NA	NA
WP_159021455.1\|302591_302876_+	hypothetical protein	NA	NA	NA	NA
WP_159021456.1\|302862_305265_+	TraG family conjugative transposon ATPase	NA	NA	NA	NA
WP_159021457.1\|305335_305854_+	conjugal transfer protein	NA	NA	NA	NA
WP_159021458.1\|305856_306699_+	hypothetical protein	NA	NA	NA	NA
WP_159021459.1\|306710_307334_+	conjugal transfer protein TraK	NA	NA	NA	NA
WP_159024199.1\|307314_308247_+	conjugative transposon protein TraM	NA	NA	NA	NA
WP_159021460.1\|308243_309098_+	DUF4138 domain-containing protein	NA	NA	NA	NA
WP_159021461.1\|309105_309471_+	hypothetical protein	NA	NA	NA	NA
WP_159021462.1\|309474_310212_-	SOS response-associated peptidase	NA	NA	NA	NA
WP_159021463.1\|310251_311214_-	endonuclease	NA	NA	NA	NA
WP_159021464.1\|312226_313585_-	hypothetical protein	NA	NA	NA	NA
WP_159021465.1\|313577_316022_-	AAA domain-containing protein	K4I1H4	Acidithiobacillus_phage	4.8e-22	40.1
WP_159021466.1\|316150_317803_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	3.5e-109	43.1
WP_047790785.1\|317814_318885_-	AAA family ATPase	NA	NA	NA	NA
WP_159021467.1\|318888_320220_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_159021468.1\|320212_323179_-	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	4.2e-20	23.3
WP_159021469.1\|323977_324130_-	hypothetical protein	NA	NA	NA	NA
WP_159021470.1\|324528_325368_-	class D beta-lactamase	NA	NA	NA	NA
WP_159021471.1\|325499_326759_-	DUF4113 domain-containing protein	A0A1W6JNT0	Morganella_phage	3.6e-82	42.2
WP_159021472.1\|326758_327205_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A2H4J538	uncultured_Caudovirales_phage	7.2e-25	42.9
WP_159021473.1\|327430_327829_-	hypothetical protein	NA	NA	NA	NA
WP_159021474.1\|328048_329635_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_159021475.1\|329642_330674_-	mobilization protein	NA	NA	NA	NA
WP_159021476.1\|330685_331066_-	hypothetical protein	NA	NA	NA	NA
WP_159021477.1\|331509_331890_-	hypothetical protein	NA	NA	NA	NA
WP_159021478.1\|331970_332318_-	single-stranded DNA-binding protein	A0A1J0MFK5	Staphylococcus_phage	1.1e-15	42.9
WP_159021479.1\|333424_334264_-	DUF932 domain-containing protein	A0A1B0WMN7	Flavobacterium_phage	4.6e-73	49.8
WP_159021480.1\|334537_334921_-	hypothetical protein	NA	NA	NA	NA
WP_159021481.1\|335017_336148_+\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJJ6	Virus_Rctr41k	5.9e-23	29.2
WP_159021482.1\|336275_336437_+	hypothetical protein	NA	NA	NA	NA
WP_159021483.1\|336752_337469_+	hypothetical protein	NA	NA	NA	NA
337511:337550	attL	NA	NA	NA	NA
WP_159021484.1\|339471_340110_+	hypothetical protein	NA	NA	NA	NA
WP_159021485.1\|340264_340963_+	hypothetical protein	NA	NA	NA	NA
WP_159021486.1\|341102_341714_+	hypothetical protein	NA	NA	NA	NA
WP_159024200.1\|341812_342208_-	hypothetical protein	NA	NA	NA	NA
WP_159021487.1\|342216_343389_-\|transposase	transposase	NA	NA	NA	NA
WP_159021488.1\|346604_347156_+	hypothetical protein	NA	NA	NA	NA
WP_159021489.1\|347260_348541_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.1e-25	28.2
WP_159021490.1\|349189_349993_+	DUF1963 domain-containing protein	NA	NA	NA	NA
WP_111710331.1\|350151_351405_+	hypothetical protein	NA	NA	NA	NA
WP_159021491.1\|351675_352815_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_159021492.1\|352814_353579_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	2.2e-26	33.8
WP_159021493.1\|355859_356225_+\|transposase	transposase	NA	NA	NA	NA
WP_159024201.1\|356176_357082_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.4e-32	35.5
WP_159021494.1\|357135_358029_+	FRG domain-containing protein	NA	NA	NA	NA
WP_159021495.1\|358120_359698_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_159021496.1\|359908_362023_+	GTP-binding protein	NA	NA	NA	NA
WP_159021497.1\|362244_362610_+\|transposase	transposase	NA	NA	NA	NA
WP_159021498.1\|362615_363338_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	4.9e-15	30.8
WP_159024202.1\|363331_363487_+\|transposase	transposase	NA	NA	NA	NA
WP_159021499.1\|363549_364350_+	TIR domain-containing protein	NA	NA	NA	NA
WP_159021500.1\|366924_367905_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_159021501.1\|368182_368434_+	hypothetical protein	NA	NA	NA	NA
WP_159021493.1\|369371_369737_+\|transposase	transposase	NA	NA	NA	NA
368644:368683	attR	NA	NA	NA	NA
WP_159024203.1\|369688_370594_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.4e-32	35.5

DBSCAN-SWA_2

1173627 : 1182592

Escherichia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159022143.1\|1173627_1174647_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.9e-81	45.5
WP_159022144.1\|1174648_1175515_+	glucose-1-phosphate thymidylyltransferase RfbA	H9NC64	Sphingomonas_phage	1.6e-97	62.7
WP_159022145.1\|1175514_1176060_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.7e-41	50.0
WP_159022146.1\|1176059_1176908_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	8.8e-40	38.4
WP_159022147.1\|1176908_1177703_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_159022148.1\|1177771_1178191_+	DUF2061 domain-containing protein	NA	NA	NA	NA
WP_159022149.1\|1178190_1178796_+	adenylyl-sulfate kinase	A0A2P1ELS9	Moumouvirus	3.7e-24	38.1
WP_159022150.1\|1178788_1179700_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_159022151.1\|1179733_1180987_+	GTP-binding protein	A0A1V0SGC3	Hokovirus	1.4e-33	26.4
WP_159022152.1\|1181122_1182592_+	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	6.2e-65	33.3

DBSCAN-SWA_3

1821862 : 1829549

Tupanvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159024258.1\|1821862_1822849_+	NAD-dependent epimerase/dehydratase family protein	A0A2K9L0I7	Tupanvirus	9.2e-89	50.3
WP_159022655.1\|1822879_1823998_+	GDP-mannose 4,6-dehydratase	M1HAR7	Acanthocystis_turfacea_Chlorella_virus	5.8e-124	59.0
WP_159022656.1\|1824010_1824967_+	NAD-dependent epimerase/dehydratase family protein	M4R1H4	Synechococcus_phage	2.3e-89	51.4
WP_159024259.1\|1824970_1826365_+	nucleotide sugar dehydrogenase	A0A127AXI2	Bacillus_phage	2.3e-61	33.8
WP_159022657.1\|1826367_1827390_+	NAD-dependent epimerase/dehydratase family protein	A0A1V0SAI6	Catovirus	4.9e-37	32.1
WP_159022658.1\|1827391_1828261_+	ABC transporter permease	NA	NA	NA	NA
WP_159022659.1\|1828286_1829549_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	6.8e-12	25.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047028

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection