CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP047038	Rhodobacter sphaeroides strain 2.4.1 substr. H2 chromosome 2, complete sequence	0 crisprs	csa3	0	3
NZ_CP047040	Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pB, complete sequence	0 crisprs	NA	0	0
NZ_CP047042	Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pDx, complete sequence	0 crisprs	NA	0	0
NZ_CP047041	Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pC, complete sequence	0 crisprs	NA	0	0
NZ_CP047037	Rhodobacter sphaeroides strain 2.4.1 substr. H2 chromosome 1, complete sequence	1 crisprs	csa3,cas3,DEDDh	0	4
NZ_CP047039	Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence	2 crisprs	NA	2	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

371596 : 430349

Vibrio_phage(13.33%)

protease,integrase,transposase,tail

attL 373354:373372|attR 400088:400106

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011339201.1\|371596_372973_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_011339201.1\|373207_374584_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
373354:373372	attL	NA	NA	NA	NA
WP_011339202.1\|375100_376393_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011339203.1\|376389_377091_-	hypothetical protein	NA	NA	NA	NA
WP_017140353.1\|377087_377303_-	hypothetical protein	NA	NA	NA	NA
WP_017140354.1\|377299_377509_-	DUF4031 domain-containing protein	A0A0A8IK97	Aurantimonas_phage	7.7e-14	59.1
WP_017140355.1\|377665_377935_-	hypothetical protein	A0A1X9HWB1	Ruegeria_phage	6.9e-07	36.7
WP_017140356.1\|377931_378159_-	hypothetical protein	NA	NA	NA	NA
WP_017140357.1\|378253_378691_+	hypothetical protein	Q8W6P3	Burkholderia_virus	1.6e-13	36.6
WP_011339204.1\|378687_379194_+	hypothetical protein	M4SPS7	Rhodobacter_phage	3.3e-10	39.2
WP_002723970.1\|379515_380160_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_061350878.1\|380184_383304_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_011339208.1\|386652_388455_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_002723978.1\|388980_389808_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011339211.1\|391509_391983_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_011339212.1\|392126_392786_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_011339213.1\|392933_393845_-	porin	NA	NA	NA	NA
WP_002723983.1\|394084_394258_-	YdcH family protein	NA	NA	NA	NA
WP_162482805.1\|394727_395474_+	DUF2306 domain-containing protein	NA	NA	NA	NA
WP_011339216.1\|397892_398357_-	cupin domain-containing protein	NA	NA	NA	NA
WP_011339217.1\|398415_399132_-	LrgB family protein	NA	NA	NA	NA
WP_011339218.1\|399124_399478_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_017140360.1\|399586_400243_-	HyuE hydantoin racemase	NA	NA	NA	NA
400088:400106	attR	NA	NA	NA	NA
WP_011339221.1\|402175_403441_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_011339224.1\|405517_405955_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_011339225.1\|405951_406851_-	EamA family transporter RarD	NA	NA	NA	NA
WP_009561543.1\|407344_407842_+	bacterioferritin	NA	NA	NA	NA
WP_011339226.1\|408521_409628_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_011339227.1\|409634_411107_-	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	3.7e-09	32.1
WP_023004202.1\|411504_412668_+	AI-2E family transporter	NA	NA	NA	NA
WP_011339229.1\|412677_415404_-	methionine synthase	NA	NA	NA	NA
WP_011339230.1\|415400_416480_-	5-methyltetrahydrofolate--homocysteine methyltransferase	A0A140XBC7	Dickeya_phage	1.3e-14	54.0
WP_011339231.1\|416755_417634_+	hypothetical protein	NA	NA	NA	NA
WP_017140362.1\|417630_418674_+	lipocalin	NA	NA	NA	NA
WP_002724021.1\|419025_419259_+	hypothetical protein	NA	NA	NA	NA
WP_011339233.1\|419678_419873_+	hypothetical protein	A0A0U4JEJ6	Pseudomonas_phage	8.8e-12	58.2
WP_011339235.1\|420153_420651_+\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	6.8e-24	37.7
WP_011339236.1\|420665_420962_+\|tail	phage tail assembly protein	E5E3Q0	Burkholderia_phage	8.4e-14	51.2
WP_162482806.1\|420988_421105_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_017140365.1\|423444_423855_+\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	8.6e-33	50.4
WP_011339239.1\|423851_424064_+\|tail	phage tail protein	R9TR63	Vibrio_phage	9.9e-09	47.8
WP_011339240.1\|424060_425035_+\|tail	phage tail protein	D4HTW7	Vibrio_phage	1.0e-44	38.6
WP_017140366.1\|425178_426006_+	DNA adenine methylase	A0A219VHB5	Ochrobactrum_phage	3.9e-93	62.3
WP_011339242.1\|426333_427401_+	restriction endonuclease or methylase	A0A1S5SAB0	Streptococcus_phage	3.3e-60	38.8
WP_011339244.1\|428978_429500_+	YbjN domain-containing protein	NA	NA	NA	NA
WP_017140370.1\|429527_430349_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	4.4e-20	31.7

DBSCAN-SWA_2

740841 : 748011

Rhizobium_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011339479.1\|740841_742188_+	S49 family peptidase	A0A068CE01	Rhizobium_phage	6.7e-58	47.0
WP_011339481.1\|742503_742923_+	hypothetical protein	NA	NA	NA	NA
WP_011339482.1\|743134_743950_+	hypothetical protein	A0A1S5R1J5	Pseudomonas_phage	4.2e-15	29.8
WP_017140410.1\|743956_744274_+	hypothetical protein	NA	NA	NA	NA
WP_011339484.1\|744277_744604_+	hypothetical protein	NA	NA	NA	NA
WP_011339485.1\|744737_745055_+	hypothetical protein	I3UM16	Rhodobacter_phage	2.8e-23	57.9
WP_011339486.1\|745107_745329_-	hypothetical protein	NA	NA	NA	NA
WP_017140411.1\|745321_745594_-	BrnT family toxin	K4NX81	Burkholderia_phage	2.4e-15	48.2
WP_011339488.1\|745821_746628_+	DNA adenine methylase	A0A291AUP9	Sinorhizobium_phage	2.5e-84	58.6
WP_011339489.1\|746682_747492_+	M15 family metallopeptidase	A0A0B5A5A2	Paracoccus_phage	7.1e-63	49.1
WP_011339490.1\|747504_748011_+	hypothetical protein	F8TVB7	EBPR_siphovirus	3.9e-11	48.2

DBSCAN-SWA_3

887167 : 895050

Nostoc_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011339591.1\|887167_888499_-	DNA cytosine methyltransferase	A0A191SB20	Nostoc_phage	6.4e-53	36.2
WP_011339592.1\|888550_888979_-	DNA mismatch endonuclease Vsr	I6NSG0	Burkholderia_phage	8.7e-36	50.4
WP_011339593.1\|889231_889714_-	hypothetical protein	F8TVB7	EBPR_siphovirus	1.2e-12	51.8
WP_011339595.1\|890589_891396_-	DNA adenine methylase	A0A291AUP9	Sinorhizobium_phage	3.4e-81	57.0
WP_011339597.1\|892376_892694_-	hypothetical protein	I3UM16	Rhodobacter_phage	3.7e-23	57.9
WP_011339598.1\|892912_893239_-	hypothetical protein	NA	NA	NA	NA
WP_011339600.1\|893565_895050_-	hypothetical protein	A0A1S5R1J5	Pseudomonas_phage	1.7e-14	30.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP047037

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047037_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047037_1

2605216-2605318

Orphan

Consensus_repeat	Method
CGCGCGCCGATCGGAGCGCGGAGCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047037_1

>merge|NZ_CP047037|1|2605216-2605318|CRISPRCasFinder
CGCGCGCCGATCGGAGCGCGGAGCTTTCACCACGCCGCACAGTCGGACGGGGCAGCCCGGGGACACGGCGGCCACCCGCGCGCTGATCGGAGCGCGGAGCTTT

>NZ_CP047037|1|1|2605216-2605318|CRISPRCasFinder
CGCGCGCCGATCGGAGCGCGGAGCTTT	CACCACGCCGCACAGTCGGACGGGGCAGCCCGGGGACACGGCGGCCACC
CGCGCGCTGATCGGAGCGCGGAGCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047037.1\|WP_011338545.1\|2605439_2606690_+\|DUF3419-family-protein	unknown	unknown	gnl\|CDD\|378757
NZ_CP047037.1\|WP_011338544.1\|2604420_2605065_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378238
NZ_CP047037.1\|WP_011338543.1\|2603504_2604416_+\|ornithine-cyclodeaminase	unknown	unknown	gnl\|CDD\|180421
NZ_CP047037.1\|WP_011338550.1\|2613529_2614957_-\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NZ_CP047037.1\|WP_002721051.1\|2607724_2608678_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP047037.1\|WP_009561673.1\|2595365_2595860_-\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|226309
NZ_CP047037.1\|WP_011338533.1\|2587900_2590444_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP047037.1\|WP_011338540.1\|2598950_2599574_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
NZ_CP047037.1\|WP_011338541.1\|2599919_2600897_+\|membrane-protein	unknown	unknown	gnl\|CDD\|224548
NZ_CP047037.1\|WP_011338546.1\|2606686_2607319_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225136
NZ_CP047037.1\|WP_002721037.1\|2598131_2598920_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197320
NZ_CP047037.1\|WP_002721040.1\|2599625_2599754_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047037.1\|WP_017139961.1\|2615202_2615742_+\|heme-binding-protein	unknown	unknown	gnl\|CDD\|377411
NZ_CP047037.1\|WP_017139960.1\|2615017_2615104_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047037.1\|WP_002721035.1\|2597098_2597785_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP047037.1\|WP_011338538.1\|2594680_2595346_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143483
NZ_CP047037.1\|WP_002721056.1\|2612941_2613466_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225786
NZ_CP047037.1\|WP_017139959.1\|2609042_2610152_-\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NZ_CP047037.1\|WP_162482771.1\|2610248_2611178_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|377028
NZ_CP047037.1\|WP_002721055.1\|2612332_2612938_-\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314

Protein	Function_ID	Function_description	E-value
NZ_CP047037.1\|WP_011338545.1\|2605439_2606690_+\|DUF3419-family-protein	gnl\|CDD\|378757	pfam11899, DUF3419, Protein of unknown function (DUF3419). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.	8.65185e-145
NZ_CP047037.1\|WP_011338544.1\|2604420_2605065_-\|hypothetical-protein	gnl\|CDD\|378238	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG). Members of this family are the CtaG protein required for assembly of active cytochrome c oxidase of the caa3 type, as found in Bacillus subtilis.	1.62038e-18
NZ_CP047037.1\|WP_011338543.1\|2603504_2604416_+\|ornithine-cyclodeaminase	gnl\|CDD\|180421	PRK06141, PRK06141, ornithine cyclodeaminase family protein.	1.79506e-84
NZ_CP047037.1\|WP_011338550.1\|2613529_2614957_-\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_CP047037.1\|WP_002721051.1\|2607724_2608678_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	7.08622e-18
NZ_CP047037.1\|WP_009561673.1\|2595365_2595860_-\|L,D-transpeptidase-family-protein	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	2.59298e-37
NZ_CP047037.1\|WP_011338533.1\|2587900_2590444_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP047037.1\|WP_011338540.1\|2598950_2599574_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	3.06401e-40
NZ_CP047037.1\|WP_011338541.1\|2599919_2600897_+\|membrane-protein	gnl\|CDD\|224548	COG1633, COG1633, Uncharacterized conserved protein [Function unknown].	1.81823e-36
NZ_CP047037.1\|WP_011338546.1\|2606686_2607319_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	3.4864e-21
NZ_CP047037.1\|WP_002721037.1\|2598131_2598920_+\|exodeoxyribonuclease-III	gnl\|CDD\|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	7.73964e-104
NZ_CP047037.1\|WP_017139961.1\|2615202_2615742_+\|heme-binding-protein	gnl\|CDD\|377411	pfam04832, SOUL, SOUL heme-binding protein. This family represents a group of putative heme-binding proteins. Our family includes archaeal and bacterial homologs.	1.92741e-52
NZ_CP047037.1\|WP_002721035.1\|2597098_2597785_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.26658e-70
NZ_CP047037.1\|WP_011338538.1\|2594680_2595346_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143483	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.	2.1325e-100
NZ_CP047037.1\|WP_002721056.1\|2612941_2613466_-\|hypothetical-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	1.12913e-12
NZ_CP047037.1\|WP_017139959.1\|2609042_2610152_-\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_CP047037.1\|WP_162482771.1\|2610248_2611178_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|377028	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12, and Nocturnin.	0.000239542
NZ_CP047037.1\|WP_002721055.1\|2612332_2612938_-\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	6.37864e-137

>NZ_CP047037.1|WP_011338544.1|2604420_2605065_-|hypothetical-protein
MSGTQSETGRQLAPGLLSLGVGLAALAGLWGGPLPDLARVSFVWHMMLHLGVILGAAPLIALGLARLAPLRTAWPVLFAGAASLLELAVVWGWHAPRLHEAAALDPTLFRIQQATFLGAGVLVWLPGLAPGRAAAGAGLLAMLFSLMHMTMLGVLLTLSPRLLYAPEICGTAFGLAPLDTQRLGGAMMAVAGLGPYLVGAAVFTMRLTREGPED
>NZ_CP047037.1|WP_011338543.1|2603504_2604416_+|ornithine-cyclodeaminase
MSIEIIGPEAEAHLSWDGLTTALTQGHKLPRAEVADIFLYRGKDTVLSRAAWIDGLGQLVKTATIFPGNGAAGKPTVNGAVTLYSDRDGTLEALVDFHLVTKWKTAGDSLLAAKRLARRDSREILLVGAGNVARSMIEAYGSHFPDARFTVWNRSADKARAMEGPQVRATEDLEAAVRAADIICTATMSQEPVVKGEWLKPGTHLDLIGAYRPDMREVDDEALRRATVFVDSRKTTIGHIGEIQDPLDRGILTEADIRADYYDLASGLYARRSDEEITLAKNGGGAHLDLMTASYIAAMWRQR
>NZ_CP047037.1|WP_011338541.1|2599919_2600897_+|membrane-protein
MFSSFSSRRRFRDLSDAEILALAISSEEDDARIYRSYADRLRAPYPGTAALFEAMAEEEDSHRRRLIGTFRDRFGETIPLIRREHVEGYPSRKPVWLLETLPLERVRREAWEMENAARSFYETAARHVTDASTRKLLGDLAAAEAAHEHRAERLAEEHLTDEATAAEDETARRQFILTWVQPGLAGLMDGSVSTLAPIFATAFATQDPATTFQVALAASVGAGISMGFTEAAHDDGVLSGRGAPWKRGLASGVMTTAGGLGHALPYLIPDFAWATGIAIAVVFFELWAIAWIQNRYMETPFLRAALQVVLGGGLVLAAGILIGFG
>NZ_CP047037.1|WP_002721040.1|2599625_2599754_-|hypothetical-protein
MKRLTLTLATLTLALGLAAPSFALPLDIPHLTWPDSCTTCGR
>NZ_CP047037.1|WP_011338540.1|2598950_2599574_-|TetR/AcrR-family-transcriptional-regulator
MPAETPPARKGRKMPQVLEGARTIFLRDGFEGASVDDIARAAGVSKATLYSYFPDKRLLFLEVAKAECLRQSEEAVALITADLAPRAVLTLAATRIVAFVLSDFGIRTYRICVAEADRFPELGHEFYESGPALVRQRIVDYLAQAVGRGELAIDDLELAADQFAELCKADLFNRIVFGVGNSVSEAERQKVAQGAVEMFLARYAPRP
>NZ_CP047037.1|WP_002721037.1|2598131_2598920_+|exodeoxyribonuclease-III
MTFTLATWNINSVRLREALVSRLLTEEMPDILCLQECKSPVEKMPLEAFRALGYHWCVARGQKSYNGVAILSKLPLVDAGDHDFADLGHARHVSAALENGVTIHNCYVPAGGDIPDREQNVKFGQKLDYLTRMRDWCRADTPKKAILVGDLNIAPREDDVWNHKSLLKIVSHTPIEVDHLNALMEAGAWIDVTRKDLPEGRLYSWWSYRSPDWEAADKGRRLDHIWATPDIVNAAHGSRILKAARGWLQPSDHAPVFATFDL
>NZ_CP047037.1|WP_002721035.1|2597098_2597785_+|response-regulator-transcription-factor
MASLKKILLVDDDDDLREALSEQLVMTEDFDVFEAASGAEGMEKAKAGLYDLVILDVGLPDTDGRELCRRMRKAGVKCPVLMLTGHDSDSDTILGLDAGANDYVTKPFKFPVLLARIRAQLRAHEQSEDAVFQLGPYSFRPAQKMLVDEKERKIRLTEKETNILKFLYRASQGVVAREVLLHEVWGYNAGVTTHTLETHIYRLRQKIEPDPSNARLLVTESGGYRLVA
>NZ_CP047037.1|WP_009561673.1|2595365_2595860_-|L,D-transpeptidase-family-protein
MTDLVVTRWGARFGRRFLPCAIGRGGITQAKREGDGATPRGTHRIAGLLYRPDRVAASELPDWALPFGPADLWSDDPRDVDYNQMVRAPYAPSHERLSRPDPLYDVILLTDWNWPEAVPGRGSAIFLHTWRRPRHPTAGCVAFARGDLLWLARSLTPESRLIVR
>NZ_CP047037.1|WP_011338538.1|2594680_2595346_+|YggS-family-pyridoxal-phosphate-dependent-enzyme
MLETIQTRIAAAEAAAGRAPGSVELIAVSKVQPLERVVAVLEAGHRIFGENYVQEAQGKWPDLRERFGPLSVHMIGPLQTNKAKVAVGLFEAIHTLDRPSLAEKLARLAQERGACPRLFVQVNTGEEPQKAGVLPADADGFVAACRAMDLPVEGLMCIPPEGCDSAPHFALLAAIAARNGLQGLSMGMSGDFEAAIAVGATHVRVGSAIFGARDYSGQARG
>NZ_CP047037.1|WP_011338533.1|2587900_2590444_-|leucine--tRNA-ligase
MSRYDPAATESRWQAAWDAAGVFTARHDPARPKYYVLEMFPYPSGRIHMGHVRNYTMGDVVARQKAAAGFSVLHPMGWDAFGMPAENAAMERGGHPKDWTYGNIADMRAQMKPLGLSIDWSREFATCDPEYYGQQQAMFIDMMEAGLVYRKNAVVNWDPVDMTVLANEQVIDGKGWRSGAPVVRRELTQWFFRISDYAGELLEALDTLKDWPEKVRLMQANWIGQSRGLQFAFSMAGAPEGFDRLEVYTTRPDTLMGASFAAISPDHPLARHLERHDPEVAEFVAECRRVGTSEEALEKAEKKGFDTGLRVRHPFDAAWELPVYIANFILMDYGTGAIFGCPAHDQRDFEFATKYGLPIRPVFLPEGCEETALAEAFVPMKSERVHYIRGFAGAEVQTGEEGVAAAIAFCESQGVGRGVTNYRLRDWGISRQRYWGCPIPVIHCETCGVVPEAKENLPVRLPDDVSFDVPGNPLDRHPTWRDCTCPKCGAKARRETDTMDTFVDSSWYYARFTAPRAATPTDAEEADYWMNVDQYIGGIEHAILHLLYSRFFARAMQKTGHLPAKAIEPFNALFTQGMVTHEIYLTRDAAGRPVYHLPEDVTDGKLADGTPVEIIPSAKMSKSKKNVVDPMNIIRQFGADTARWFVMSDSPPERDVEWTASGAEAASKHLHRVWRLADEISRADGEANAEDGALDKATARAIAEVTQGVEGFAFNKAIAKLYEFTNTLSRSGAGAEAKKRAMRTMAQLMSPMVPHLAEEVWAMLGGEGLVAQAAWPKADPALLIDDTVTLPIQVNGKRRGEITVPKEMAASEVEKLVLADEAVQRALGGAAPKKLIVVPGRIVNVVI
>NZ_CP047037.1|WP_011338545.1|2605439_2606690_+|DUF3419-family-protein
MTQFALTHLPAPPVARQIGAAVHRTSLLSAEGLMERMFSRLFHGLVYPQIWEDPAVDMAALAIRPGDRLVAIASGGCNVLSYLTQGPGSILAVDLSPAHVALGRLKLAAARTLPDHAAFFDLFGRADLPGNAALYDRHIAPALDGRSRRYWEARSPFGRRIQLFERGFYRHGALGRFIGAAHTLARAAGTDLRGFLDCPDIEAQRSFFYAHIGPLFEAPVVQALARRPAALFGLGIPPAQYALLAGDGDGDVLPVLRQRLHRLLCDFPLRENYFAFQAIARRYPRPGEGALPPYLEPTAFETLRENAGRVQIENRSLTEALAAEPEESIHGFTLLDAQDWMTDAQLTALWRQVTRTAAPGARVIFRTGGAADLLPGRVPEEILGHWRADRAAGQAGHAADRSAIYGGFHLYRRRDA
>NZ_CP047037.1|WP_011338546.1|2606686_2607319_+|methyltransferase-domain-containing-protein
MTDATHAALMDATYRHQRRIYDVTRRHFLLGRDRLIAELDPPPGARVLEIACGTGRNLDLIGRRWPGCRLSGLDISQEMLASARARLGRRATLALGDATRFEALPLFGTDRFERIVLSYALSMIPDWREALREAALHLVPGGRLHVVDFGDQAGLPGWARAGLRGWIGRFHVTPRDDLGTALGETALGIGGYAEYRSLGGGYAILGTLTR
>NZ_CP047037.1|WP_002721051.1|2607724_2608678_-|DMT-family-transporter
MAKSNTRGALLALLAFAIYATHDVVVKVLGRDYTAVQILFFATLLGFPLASMMLMRDRADGNLRPRHPWWVLLRTCCIVTTGLCAFYAFSVLPLAQTYAILFTMPLLVTLLAIPLLGETIGLHRGAAIATGLLGVLIVLRPGAEPLSLGHAAALLAAVTSSLGSVIVRKIGQDERSVVLLLYPMVANFFVLGAALPFVYRPMPVEHLGMMGIIAAFSFVAMLLTITAYRMAEAVIVAPMQYSQMVWAAIFGWLIFGERSDVWTWVGAGVIIASGLYIVGRESRRNVSENRPASQTRLRPEVGLMPRLLRRRETRDTP
>NZ_CP047037.1|WP_017139959.1|2609042_2610152_-|3-isopropylmalate-dehydrogenase
MANPSLLILAGDGIGPEVMAEVKRIIGWFGEKRGVSFDVSEDLVGGAAYDAHGTPLADETMARAQEVDAVLLGAVGGPKYDVLDFSVKPERGLLRLRKEMDLYANLRPAQCFDALADFSSLKRDIVAGLDIMIVRELTSGVYFGEPRGIFPDNEGGRFGVNTQRYTTEEIRRVARSAFELARRRNNRVCSMEKANVMESGILWREEVQWVHDNEYPDVELSHMYADNGAMQLVRWPRQFDVIVTDNLFGDILSDCAAMLTGSLGMLPSASLGAPMANGRPKALYEPVHGSAPDIAGQGKANPIACILSFAMALRYSFDMGEEATRLEKAVETVLADGVRTADLMGPEGGTPVSTSGMGDAVLAALDASL
>NZ_CP047037.1|WP_162482771.1|2610248_2611178_-|endonuclease/exonuclease/phosphatase-family-protein
MDLERAGPGLLLRDIRAGKDPQILAVRRMIEALRADVLFLTGVDYDADLLAARALAGDLYPHLLALRPNVGRPTGIDLDGDGRLGGPGDAQGWGRFGGQGAWCCSRACRSACRATSRTCSGRTCRRRTCRRCRPRRARCNGSPRWGAWEVPLPRTGGPALKLLLWSATPPVFDGPEDRNGRRAGDEALFWARLLDGRLPFPAPEGPVLLMGKANIDPLAGDGPRAAIAALLAHPALQDPAPRGPDGSRATADFRADDGPGLLRTDYILPARGLPVTASGVLWPPPGDPLAAVAAQASRHRPVWVELDLP
>NZ_CP047037.1|WP_002721055.1|2612332_2612938_-|3-isopropylmalate-dehydratase-small-subunit
MQEFTKVTGVAAPMPLVNIDTDMIIPKQFLKTIQRSGLGKNLFDEMRYNPDGSEIPEFVLNQPAYRDAQIIVAGDNFGCGSSREHAPWALLDFGIRCVISTSFADIFYNNCFKNGILPIVMPPEVVEVLMEDARRGANARMTVDLEAQTVTTSDGQSFPFQVDSFRRHCLMNGLDDIGLTLEKAASIDGFERDLATLRPWV
>NZ_CP047037.1|WP_002721056.1|2612941_2613466_-|hypothetical-protein
MKGTSSLIVSGILALLGGIAALAFPLPVSLAVTVLAGCVFVASGAFGLWAAFSDRGMPSRGAAAFFSLVSLVAGVWMLANPLAGMVSLTLMLGALFLVSGVVRLGLSLATWRGTVMFWLMALSGLISAGLGLFILLRLPEASLVLLGTLVAVELIVMGATLVAMGFALRKSGNP
>NZ_CP047037.1|WP_011338550.1|2613529_2614957_-|3-isopropylmalate-dehydratase-large-subunit
MTAPRTLYDKIWDDHVVHQSEDGTCLLYIDRHLVHEVTSPQAFEGLRMTGRKVRAPEKTIAVPDHNVPTTEGRDTKIDNEESRIQVEALDKNARDFGINYYPVSDIRQGIVHIVGPEQGWTLPGMTVVCGDSHTATHGAFGALAHGIGTSEVEHVLATQTLIQKKSKNMKVEITGSLRPGVTAKDITLSVIGLTGTAGGTGYVIEYCGQAIRELSMEGRMTVCNMAIEGGARAGLIAPDEKTFAYVMGRPHAPKGAAWEAALAYWKTLFTDEGAQFDKVVTIRGEDIAPVVTWGTSPEDVLPITATVPAPEDFTGGKVEAARRSLEYMGLTPGQKLTDIKIDTVFIGSCTNGRIEDLRAAAEILKGKKVAPGMRAMVVPGSGLVRAQAEEEGLAQIFIDAGFEWRLAGCSMCLAMNPDQLSPGERCASTSNRNFEGRQGRNGRTHLVSPGMAAAAAITGHLTDVRDLMMAPAEPA
>NZ_CP047037.1|WP_017139960.1|2615017_2615104_-|hypothetical-protein
MERIFDMDDRARLPWRFYGASLSILARL
>NZ_CP047037.1|WP_017139961.1|2615202_2615742_+|heme-binding-protein
MNGAVDHKGYEQPTYDLEFAETATEIRRYGPYLVAEVTMAGDRSTAITRGFRVLARYIFGGNAESRRIEMTVPVSQLPAGEDLWTVRFTMPAVRSASLLPAPKDSRIRFVTVPPSRQAVRRFSGWPTDHALRRQAEGLAHWIAERGLPKREGPYFYFYDSPMTLPWQRRNEVAFGLGEG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

216364 : 245728

Paracoccus_phage(30.77%)

capsid,tail,transposase,portal,head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080588209.1\|216364_216589_+\|transposase	transposase	NA	NA	NA	NA
WP_011336890.1\|219340_220177_+	hypothetical protein	NA	NA	NA	NA
WP_011336892.1\|221214_221859_-	hypothetical protein	NA	NA	NA	NA
WP_011336893.1\|222072_222555_-	hypothetical protein	F8TVB7	EBPR_siphovirus	7.1e-10	47.0
WP_011336894.1\|222567_223377_-	hypothetical protein	A0A0B5A5A2	Paracoccus_phage	3.8e-64	50.2
WP_011336895.1\|223430_224237_-	DNA adenine methylase	A0A291AUP9	Sinorhizobium_phage	9.8e-81	56.6
WP_011336897.1\|225649_226039_+	response regulator	NA	NA	NA	NA
WP_011336898.1\|226109_226427_-	hypothetical protein	I3UM16	Rhodobacter_phage	2.1e-23	58.9
WP_162482714.1\|226560_226899_-	hypothetical protein	NA	NA	NA	NA
WP_011337195.1\|226902_227220_-	hypothetical protein	NA	NA	NA	NA
WP_011337196.1\|227226_228711_-	hypothetical protein	G8DH61	Emiliania_huxleyi_virus	1.6e-12	32.5
WP_023003549.1\|234760_235006_-	hypothetical protein	NA	NA	NA	NA
WP_011337201.1\|235462_235906_-	hypothetical protein	A0A2P1N076	Streptomyces_phage	1.8e-07	33.3
WP_011336907.1\|235915_236296_-	DUF3168 domain-containing protein	A0A0U2BX31	Paracoccus_phage	2.0e-28	55.6
WP_011336908.1\|236299_236467_-	hypothetical protein	NA	NA	NA	NA
WP_011336909.1\|236463_236937_-	hypothetical protein	A0A0U2C0P4	Paracoccus_phage	1.1e-26	51.9
WP_011336910.1\|236933_237266_-\|head,tail	head-tail adaptor protein	A0A0U2BXJ0	Paracoccus_phage	2.0e-16	44.5
WP_011336911.1\|237262_237769_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_011336912.1\|237773_238064_-	hypothetical protein	NA	NA	NA	NA
WP_011336913.1\|238197_239532_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	7.1e-52	37.4
WP_011336914.1\|239785_240529_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_011336915.1\|240539_241499_-	S49 family peptidase	I3ULZ8	Rhodobacter_phage	3.0e-20	36.2
WP_011336916.1\|241495_242764_-\|portal	phage portal protein	Q6DMU2	Streptococcus_phage	6.6e-23	25.8
WP_011336917.1\|242877_243750_-	EamA family transporter	NA	NA	NA	NA
WP_011336918.1\|244069_245728_-\|terminase	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	1.7e-79	32.3

DBSCAN-SWA_2

630617 : 665312

Paracoccus_phage(27.27%)

tail,protease,portal,head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011337174.1\|630617_631352_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_011337175.1\|631367_631664_+	hypothetical protein	NA	NA	NA	NA
WP_023003546.1\|631670_632348_-	hypothetical protein	NA	NA	NA	NA
WP_011337177.1\|632489_632687_+	hypothetical protein	NA	NA	NA	NA
WP_017140100.1\|632781_633435_+	hypothetical protein	NA	NA	NA	NA
WP_011337179.1\|633903_634356_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011337180.1\|634594_635347_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_011337182.1\|635705_636560_+	hypothetical protein	NA	NA	NA	NA
WP_011337187.1\|641141_642353_+	hypothetical protein	NA	NA	NA	NA
WP_011337188.1\|642349_644155_+	thiazole biosynthesis adenylyltransferase ThiF	NA	NA	NA	NA
WP_011337189.1\|644147_644666_+	hypothetical protein	NA	NA	NA	NA
WP_011337190.1\|644820_645318_-	hypothetical protein	F8TVB7	EBPR_siphovirus	5.6e-10	47.0
WP_011337191.1\|645330_646140_-	hypothetical protein	A0A0B5A5A2	Paracoccus_phage	4.9e-64	50.0
WP_011337192.1\|646194_647001_-	DNA adenine methylase	A0A291AUP9	Sinorhizobium_phage	1.6e-83	57.8
WP_011337193.1\|647305_648211_+	DMT family transporter	NA	NA	NA	NA
WP_011336898.1\|648281_648599_-	hypothetical protein	I3UM16	Rhodobacter_phage	2.1e-23	58.9
WP_011337195.1\|649075_649393_-	hypothetical protein	NA	NA	NA	NA
WP_147176079.1\|649399_650215_-	hypothetical protein	A0A0S3UG21	Pseudomonas_phage	2.6e-12	30.8
WP_162482722.1\|650436_650760_+	hypothetical protein	NA	NA	NA	NA
WP_023003549.1\|656934_657180_-	hypothetical protein	NA	NA	NA	NA
WP_011337201.1\|657636_658080_-	hypothetical protein	A0A2P1N076	Streptomyces_phage	1.8e-07	33.3
WP_011337202.1\|658089_658470_-	DUF3168 domain-containing protein	A0A0U2BX31	Paracoccus_phage	3.8e-27	53.2
WP_011337203.1\|658473_659031_-	hypothetical protein	A0A0U2C0P4	Paracoccus_phage	2.9e-15	37.3
WP_011337204.1\|659030_659363_-\|head	phage head closure protein	NA	NA	NA	NA
WP_011337205.1\|659359_659701_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_162482723.1\|659744_660131_-	hypothetical protein	NA	NA	NA	NA
WP_011337208.1\|661516_662356_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	1.4e-69	58.1
WP_011337209.1\|662352_663603_-\|portal	phage portal protein	M4QP41	Tetraselmis_viridis_virus	5.8e-80	40.3
WP_011337210.1\|663602_665312_-\|terminase	terminase large subunit	A0A2H4J559	uncultured_Caudovirales_phage	6.2e-133	41.9

DBSCAN-SWA_3

1622284 : 1696046

Paracoccus_phage(27.27%)

tRNA,capsid,tail,protease,portal,head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017140224.1\|1622284_1624027_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_011337866.1\|1624102_1624588_-	hypothetical protein	NA	NA	NA	NA
WP_002720104.1\|1625349_1625805_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_011337869.1\|1625827_1626856_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_011337870.1\|1626880_1627693_-	glutamate racemase	NA	NA	NA	NA
WP_011337872.1\|1631372_1632266_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011337874.1\|1635107_1635350_+	BolA family transcriptional regulator	NA	NA	NA	NA
WP_002720111.1\|1635410_1635776_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_002720112.1\|1635996_1636371_-	cell division protein ZapA	NA	NA	NA	NA
WP_017140225.1\|1636363_1636831_-	hypothetical protein	NA	NA	NA	NA
WP_017140226.1\|1639176_1639470_-	DUF2934 domain-containing protein	NA	NA	NA	NA
WP_002720117.1\|1641046_1642048_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_002720118.1\|1642257_1642413_+	hypothetical protein	NA	NA	NA	NA
WP_002720120.1\|1642998_1643433_-	CBS domain-containing protein	NA	NA	NA	NA
WP_009565364.1\|1644484_1645984_+	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_002720124.1\|1647417_1647621_+	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_009565362.1\|1647855_1650714_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	61.0
WP_029534511.1\|1652170_1653565_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA
WP_002720129.1\|1654434_1655691_-	MFS transporter	NA	NA	NA	NA
WP_011337883.1\|1655770_1656811_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_002720132.1\|1660270_1660732_+	peroxiredoxin	NA	NA	NA	NA
WP_011337885.1\|1661142_1662486_+	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	1.5e-20	46.7
WP_162482791.1\|1662539_1662995_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_011337887.1\|1663190_1663967_-	DUF2189 domain-containing protein	NA	NA	NA	NA
WP_002720136.1\|1664335_1665463_-	peptide chain release factor 2	NA	NA	NA	NA
WP_011337888.1\|1665571_1668121_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_011337890.1\|1669494_1670646_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_011337891.1\|1670813_1671557_+	DsbA family protein	NA	NA	NA	NA
WP_011337892.1\|1671891_1673025_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_017140227.1\|1673155_1674370_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011337894.1\|1674480_1675704_-	5-aminolevulinate synthase	V5LQ39	Emiliania_huxleyi_virus	3.6e-34	29.1
WP_023003635.1\|1679867_1680200_+	hypothetical protein	NA	NA	NA	NA
WP_023003637.1\|1680232_1683850_-	hypothetical protein	A0A0U2C146	Paracoccus_phage	1.3e-103	37.0
WP_023003639.1\|1683849_1684275_-	hypothetical protein	S4TR39	Salmonella_phage	1.3e-10	31.4
WP_011337903.1\|1685008_1685653_-	hypothetical protein	NA	NA	NA	NA
WP_023003642.1\|1685656_1687978_-	hypothetical protein	A0A2H4PI09	Pseudomonas_phage	8.6e-21	29.6
WP_023003644.1\|1688038_1688308_-	hypothetical protein	NA	NA	NA	NA
WP_023003646.1\|1688382_1688715_-	hypothetical protein	NA	NA	NA	NA
WP_011337905.1\|1688841_1689327_-	HNH endonuclease	Q6XQ94	Escherichia_phage	4.2e-18	39.5
WP_023003648.1\|1689492_1689912_-\|tail	phage major tail protein 2	NA	NA	NA	NA
WP_023003649.1\|1689975_1690344_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_023003651.1\|1690349_1690814_-	HK97 gp10 family phage protein	A0A0U2C0P4	Paracoccus_phage	4.1e-15	34.0
WP_011337908.1\|1690814_1691132_-\|head	phage head closure protein	NA	NA	NA	NA
WP_011337910.1\|1691496_1692606_-\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_011337911.1\|1692678_1693203_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	3.0e-30	50.6
WP_011337912.1\|1693199_1694426_-\|portal	phage portal protein	Q6JIM9	Burkholderia_virus	7.5e-32	30.8
WP_017140232.1\|1694465_1696046_-\|terminase	terminase	A0A286S1M9	Klebsiella_phage	8.5e-145	53.3

DBSCAN-SWA_4

1850924 : 1926613

Tupanvirus(20.0%)

integrase,tRNA,capsid,protease,portal,terminase

attL 1848767:1848814|attR 1851833:1851880

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1848767:1848814	attL	NA	NA	NA	NA
WP_011338017.1\|1850924_1851758_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011338019.1\|1852864_1853215_-	hypothetical protein	NA	NA	NA	NA
1851833:1851880	attR	NA	NA	NA	NA
WP_011338020.1\|1853896_1854295_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_002720283.1\|1854315_1854543_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_011338021.1\|1854555_1855125_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_002720285.1\|1855445_1856780_-	trigger factor	NA	NA	NA	NA
WP_017140239.1\|1857644_1858481_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_023003675.1\|1858477_1859179_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_002720289.1\|1859330_1859669_+	P-II family nitrogen regulator	NA	NA	NA	NA
WP_002720290.1\|1859751_1861161_+	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_009566212.1\|1861353_1862406_-	response regulator	NA	NA	NA	NA
WP_009566213.1\|1862402_1862840_-	response regulator	NA	NA	NA	NA
WP_011338023.1\|1862836_1864321_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_002720294.1\|1864637_1865756_+	AAA family ATPase	A0A1L2CUT3	Pectobacterium_phage	1.7e-27	31.8
WP_011338025.1\|1865752_1867063_+	hypothetical protein	NA	NA	NA	NA
WP_011338027.1\|1868089_1868962_-	3-hydroxyisobutyrate dehydrogenase	A0A077SLF7	Escherichia_phage	3.0e-19	31.5
WP_011338030.1\|1871249_1871543_-	hypothetical protein	NA	NA	NA	NA
WP_011338031.1\|1871750_1872650_-	beta-mannanase	NA	NA	NA	NA
WP_011338033.1\|1874530_1875523_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	4.1e-44	35.6
WP_011338034.1\|1875515_1876553_-	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	3.0e-74	46.3
WP_002720305.1\|1877438_1878515_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002720306.1\|1878631_1878823_+	hypothetical protein	NA	NA	NA	NA
WP_011338036.1\|1878893_1880567_-	iron ABC transporter permease	NA	NA	NA	NA
WP_002720309.1\|1880719_1880974_-	DUF2312 domain-containing protein	A0A1X9HX62	Ruegeria_phage	4.1e-25	76.6
WP_002720310.1\|1881110_1881326_+	hypothetical protein	NA	NA	NA	NA
WP_011338037.1\|1881731_1882049_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_162482751.1\|1882375_1882855_+	TIGR01244 family phosphatase	NA	NA	NA	NA
WP_002720316.1\|1886844_1887135_-	hypothetical protein	NA	NA	NA	NA
WP_002720317.1\|1887131_1887500_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.1e-15	35.6
WP_011338041.1\|1887660_1888947_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011338042.1\|1889083_1889929_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_011338043.1\|1889938_1890679_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	5.6e-14	31.8
WP_011338044.1\|1890871_1891813_+	2-hydroxyacid dehydrogenase	NA	NA	NA	NA
WP_011338045.1\|1891850_1893632_-	dihydroxy-acid dehydratase family protein	NA	NA	NA	NA
WP_002720324.1\|1895356_1896337_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011338047.1\|1896366_1897218_-	ABC transporter permease	NA	NA	NA	NA
WP_002720326.1\|1897214_1898078_-	ABC transporter permease	NA	NA	NA	NA
WP_011338050.1\|1902034_1902667_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011338051.1\|1903509_1904814_-	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA	NA	NA	NA
WP_002720333.1\|1904885_1905425_-	DedA family protein	NA	NA	NA	NA
WP_011338052.1\|1905488_1906826_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002720335.1\|1907097_1907592_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_011338054.1\|1907599_1908946_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_011338055.1\|1908965_1909610_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_002720338.1\|1909558_1909930_-	DUF2155 domain-containing protein	NA	NA	NA	NA
WP_002720339.1\|1909926_1910397_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_002720340.1\|1910396_1910771_-	NADH:ubiquinone oxidoreductase subunit NDUFA12	NA	NA	NA	NA
WP_061350849.1\|1910895_1912161_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.0e-133	58.4
WP_002720342.1\|1912285_1912918_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	5.2e-61	61.0
WP_011338057.1\|1913084_1913693_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_011338058.1\|1913807_1915013_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011338060.1\|1916694_1917339_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_002720349.1\|1917471_1917942_+	CAP domain-containing protein	A0A0E3T7R5	Bacillus_phage	4.3e-12	34.4
WP_017140245.1\|1920597_1920876_+	hypothetical protein	NA	NA	NA	NA
WP_011338064.1\|1920888_1921395_-	hypothetical protein	NA	NA	NA	NA
WP_011338065.1\|1921430_1921937_-	hypothetical protein	NA	NA	NA	NA
WP_011338066.1\|1921938_1923000_-\|portal	phage portal protein	NA	NA	NA	NA
WP_017140247.1\|1923556_1924819_-\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_017140248.1\|1925134_1926613_-\|terminase	terminase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP047039

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047039_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047039_1

60851-60929

Orphan

Consensus_repeat	Method
TTGTTTCGCGCGCGAAACAAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047039_1

>merge|NZ_CP047039|1|60851-60929|CRISPRCasFinder
TTGTTTCGCGCGCGAAACAAATCGGGGGGTCGGCAGGGCGGCACGGCGGGGGCAAATTGTTTCGCGCGCGAAACAAATC

>NZ_CP047039|1|1|60851-60929|CRISPRCasFinder
TTGTTTCGCGCGCGAAACAAATC	GGGGGGTCGGCAGGGCGGCACGGCGGGGGCAAA
TTGTTTCGCGCGCGAAACAAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047039.1\|WP_011836184.1\|51484_52210_+\|sulfotransferase	unknown	unknown	gnl\|CDD\|379204
NZ_CP047039.1\|WP_011836244.1\|69348_70707_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226081
NZ_CP047039.1\|WP_011836240.1\|75261_75951_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047039.1\|WP_011836242.1\|72793_73735_+\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NZ_CP047039.1\|WP_011836238.1\|77146_78151_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187563
NZ_CP047039.1\|WP_011836237.1\|78435_79056_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047039.1\|WP_011836183.1\|52576_53359_+\|deacetylase-sulfotransferase	unknown	unknown	gnl\|CDD\|366246
NZ_CP047039.1\|WP_002724812.1\|53333_54224_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NZ_CP047039.1\|WP_050988687.1\|59428_60835_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274585
NZ_CP047039.1\|WP_002724804.1\|56739_57678_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133039
NZ_CP047039.1\|WP_002724637.1\|50447_51284_-\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NZ_CP047039.1\|WP_009565051.1\|68198_69191_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047039.1\|WP_002724798.1\|65078_65879_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NZ_CP047039.1\|WP_080588238.1\|79000_79654_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047039.1\|WP_011836181.1\|55068_56109_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
NZ_CP047039.1\|WP_061350902.1\|65942_68198_+\|glycosyl-transferase-family-1	unknown	unknown	gnl\|CDD\|379549
NZ_CP047039.1\|WP_002724800.1\|62372_63194_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213187
NZ_CP047039.1\|WP_002724803.1\|57728_58691_-\|replication-initiator-protein-A	unknown	unknown	gnl\|CDD\|370826
NZ_CP047039.1\|WP_009565041.1\|56112_56676_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NZ_CP047039.1\|WP_011836182.1\|54220_55072_-\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|367904

Protein	Function_ID	Function_description	E-value
NZ_CP047039.1\|WP_011836184.1\|51484_52210_+\|sulfotransferase	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	2.53227e-11
NZ_CP047039.1\|WP_011836244.1\|69348_70707_-\|hypothetical-protein	gnl\|CDD\|226081	COG3551, COG3551, Uncharacterized protein conserved in bacteria [Function unknown].	4.52734e-49
NZ_CP047039.1\|WP_011836238.1\|77146_78151_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187563	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs. This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.34107e-167
NZ_CP047039.1\|WP_011836183.1\|52576_53359_+\|deacetylase-sulfotransferase	gnl\|CDD\|366246	pfam00685, Sulfotransfer_1, Sulfotransferase domain.	7.28903e-11
NZ_CP047039.1\|WP_002724812.1\|53333_54224_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	2.32712e-162
NZ_CP047039.1\|WP_050988687.1\|59428_60835_+\|AAA-family-ATPase	gnl\|CDD\|274585	TIGR03453, partition_RepA, plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. [Mobile and extrachromosomal element functions, Plasmid functions].	4.83014e-59
NZ_CP047039.1\|WP_002724804.1\|56739_57678_-\|glycosyltransferase	gnl\|CDD\|133039	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	3.06441e-72
NZ_CP047039.1\|WP_002724637.1\|50447_51284_-\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	0
NZ_CP047039.1\|WP_011836242.1\|72793_73735_+\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	2.71163e-15
NZ_CP047039.1\|WP_002724798.1\|65078_65879_+\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	2.5419e-33
NZ_CP047039.1\|WP_011836181.1\|55068_56109_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP047039.1\|WP_061350902.1\|65942_68198_+\|glycosyl-transferase-family-1	gnl\|CDD\|379549	pfam14307, Glyco_tran_WbsX, Glycosyltransferase WbsX. Members of this family are found in within O-antigen biosynthesis clusters in Gram negative bacteria, where they are predicted to function as glycosyltransferases.	3.29855e-148
NZ_CP047039.1\|WP_002724800.1\|62372_63194_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	1.78218e-89
NZ_CP047039.1\|WP_002724803.1\|57728_58691_-\|replication-initiator-protein-A	gnl\|CDD\|370826	pfam10134, RPA, Replication initiator protein A. Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.	2.32126e-121
NZ_CP047039.1\|WP_009565041.1\|56112_56676_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	5.08975e-99
NZ_CP047039.1\|WP_011836182.1\|54220_55072_-\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|367904	pfam04321, RmlD_sub_bind, RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.	1.37587e-123

>NZ_CP047039.1|WP_050988687.1|59428_60835_+|AAA-family-ATPase
MRKSPPAREPQVPLPPYFNISPDAALAELEAPLTTAGFAEIARSCAQGRDDLAARGLDAEGRRSLRLFSTWEITRYLIPVATAHFRRVLKANPDLPQGISETEGGAKWFTLDEVLRLRAHFAAEGSKAKEYRPYRPAGLPAKLVAVANFKGGVGKTSTAAHLAMSAALDGYRVLVIDLDSQGSMTSIFGGRVADEWGTVFPLLARHYAAHLQAENRARVARGDPPVPMDETLTEAQKIRAGDLIAKTHWPNIDLIGAQLNLYWAEFQIPVWRMQGRSWKLWDALTDVLAEDGVLDRYDVIFLDTPPALGYLTINGLAAADILLVPLGASFLEFDSTGRFFDMLHSTFRSIEEGENIAARALGREELAFEWDAVRAVLTRYDGAQQAEMAALMQAYMGRTMAPERQDFTALIGQAGEQVNGIYEADYRDFNRDTYIRGRETFDATYAAFKRLLVGIWRREELAAADAAE
>NZ_CP047039.1|WP_002724803.1|57728_58691_-|replication-initiator-protein-A
MADFFICDILDALPKDDMASMEHPVFSLATRPDLRVLDYAHNGVRITVTPSVRGLATLFDKDILIYCVSQLMAALNAGRAISRTLHLTAHDLMTATHRETSGDGYQRLREAFERLAGTRITTNMEVGGREITTGFGLIESWQIVRRSRGGRMVQVMVTLSEWLFQAVLTKSVLTLSRDYFRLRKPLERRIYELARKHCGQQPEWRVSIATLAKKSGSASPLRVFRKMIRDMIAADSLPGYSLAEEPGDLLCVTRRAAVLAPGLAPALRDTTLERVRARMPGWDVHALVAEWHAFWHSSGQPRLRSADAAFLGWIERRVPG
>NZ_CP047039.1|WP_002724804.1|56739_57678_-|glycosyltransferase
MTDAPPPRIALLLATYNGAANLEAQLESFAAQTLRPTWLVVSDDGSTDATRALLAAFAARHPWLALRLVEGPCRGSAQNFLHLLGQVPPEADMAALSDQDDVWLPEKLARGAAAMADLPADLPVLYGGSSWICDAELGNRRPYPLPVRPPGFRHALVQNIAGGNTMMLNRGAIALLAAASREPERIVVHDWWIYQIVSGAGGRVIFDPVPLLLYRQHGGNLIGANDGFRAKYRRLRMLLSGGFRQWNAINIRALSASAHRFTPENRRLLAEFEALRRAGPWGRLRQLKRIGLYRQGLPGRLSLWLAAVLGRI
>NZ_CP047039.1|WP_009565041.1|56112_56676_-|dTDP-4-dehydrorhamnose-3,5-epimerase
MQIEETELPGVLILTPRVFGDARGSFCEAWNRATLQGLGIDLDFVQDNQSISAPVGTVRGLHYQAPPHAQDKLVRVGHGAILDVAVDVRVGSPTYGRWVGVELTAGNARQLLVPKGFLHGFVTREPDTVVLYKTTDVYAPDCDGAVHFADPDLGIDWGIDPASAVLSDKDARAPRFADWTSPFSIEV
>NZ_CP047039.1|WP_011836181.1|55068_56109_-|dTDP-glucose-4,6-dehydratase
MKLIVTGGAGFIGSAVVRKAVADGHHVVNLDCLTYAACLDNLASVAGAPNYVFEKADIRDAEAMARIFATHRPDAVMHLAAESHVDRSIDGPGAFIDTNVRGTYVLLEAARAYWVGQGKPQGFRFHHISTDEVFGTLGETGQFTEETPYAPNSPYSASKAASDHLVRAWGETYGLPYVLTNCSNNYGPFHFPEKLIPVVILKALAGAPIPVYGKGENVRDWLYVEDHADALLTVLARGENHRSYNIGGENEAKNIDIVRKICAILDARRPKATPYADQIAFVTDRPGHDLRYAIDPTRIRTELGWRPSVTLDEGLERTVDWYLANEPWWRALQDRAGVGERLGVKA
>NZ_CP047039.1|WP_011836182.1|54220_55072_-|dTDP-4-dehydrorhamnose-reductase
MILVFGRTGQVARELARQAPDARFLGRDEADLADPEACARAIREAKPDAVINAAAWTAVDRAEEEEAPATVVNGEAPGAMARACAELGIPFVQISTDYVFDGSGTRPWQPGDPVGPLGAYGRSKLAGEEAVRAAGGPHAILRTSWVFSAHGANFVKTMLRLGATRDRLTVVCDQVGGPTPAADIAAACLAMARGLAARPDLSGTYHLSGGPDVSWADFAREIFRQAELDCLVADIASADYPQKAHRPANSRMDCSDLARFGLSRPDWRQGLARVLADLQEVSE
>NZ_CP047039.1|WP_002724812.1|53333_54224_-|glucose-1-phosphate-thymidylyltransferase-RfbA
MSVRKGIILAGGSGTRLYPLTIGVSKQLMPVYDKPMIYYPLSVLMLAGIREIAIITTPQDQEQFRRALGTGAQWGISLTYLVQPRPEGLAQAYTIAEEFLAGSPSCMVLGDNIFFGHGLPDLLALADAKTEGGTVFGYHVADPERYGVVAMDERGRVTQIVEKPKVAPSNYAVTGIYFLDARAPDLVHGIRPSERGELEIVSLLEIYLEEGLLDVQRMGRGFAWLDTGTHASLLDAGNFVRTLQLRQGMQTGCPEEIAFARGWVDAEALTGMAAQLSKNDYGRYLQGLLTDRMMEG
>NZ_CP047039.1|WP_011836183.1|52576_53359_+|deacetylase-sulfotransferase
MRAASPRVRFLVAGAQKCGTTALHRFLSAHPGLFLPAGKELHFFDRPLPDDWSGPEGPLYETAFAQARPDQLCGEATPVYLFHTPSLQRIRAYNPAMRLILLLRDPVLRAYSHWRMERTRGAETLPFPEAIRAGRARVAEDWRTFSYVERGFYGAQLTELERLFPREQRLVLWTDEMQRDHAGTLARIWRFLGCAAPPVPPPPAEIRPLDPAPGLAPLAEEDARYLRSLYAPDIALTEALTGRDLSLWREGALSPPSSGR
>NZ_CP047039.1|WP_011836184.1|51484_52210_+|sulfotransferase
MDRDLPETPALVLGASGGSGTRVAGQLLRAAGGYLGGARNEAGDSLALVAAIEALAARGARLLEGGRPEEADLALWRAALTEHLALHAGEPFWGWKNPRSMFLLPFSVALVPGLRFIHMVRDGRDMALSGNRRQYERHVPEGPGTPADRARFWAESNLRVKRHAEAVLGDRYAILRFEDLCRDPEGCMARLGRQFGLRLEPAGTGIEVRPPDGVGRHRALPAADRAAVEAAAAPAMEAFGY
>NZ_CP047039.1|WP_002724637.1|50447_51284_-|3-deoxy-8-phosphooctulonate-synthase
MTETPTIVTIGDIAIGGGHPIALITGPCQLESLDHARMMAERIAEACAPTGTKFIFKASYDKANRSSLSTARGLGMEKGLEILGRIREEFGVPVLTDVHEPGHCATAAEVCDVLQIPAFLCRQTDLLLAAGETGRAVNVKKGQFLAPWDMKNVADKVASTGNRRILLCERGTSFGYNTLVTDFRGLPTMAATGWPVVFDATHSVQQPGGLGGSSGGQREFAPVLARAACAVGVSALFIETHEDPDRAPSDGPNMIPVDRMGRLIADLCAFDALAKSLA
>NZ_CP047039.1|WP_002724800.1|62372_63194_-|ABC-transporter-ATP-binding-protein
MIELRNVSKSYVLNGTRKVVARDLNFTFPSGESVGLLGRNGAGKSSLLRMLAGTMLPDTGEILSSGTISWPVGFSGSFHPELTGAQNVRFVARLYGVDTEAMIAFVRDFAEIGQHFHLPVRSYSSGMRSRLAFGISMAVPFDTYLIDEVTAVGDAAFSAKSNAILRARLEESGAVIVSHSMPLLKKLCRSGAVLHDGQLFYYERIEQAIRHHESMMRGALPRWMRGDLDEGEGEEAGAAAPGPRARARAGAARAGGGRAARPGPASGTSEPRG
>NZ_CP047039.1|WP_002724798.1|65078_65879_+|ABC-transporter-permease
MTGLSGLLAGRRFLWGRSVLSLMLREMATSYGRSPGGYLWAVAEPVAALTLLTVVFSFLMRSPPLGNNFPLFYATGYLPFMYYTALTAKIGQAIRFSRPLLAYPAVSFFDAILSRFLLNTLTNLVVFVIVMVGIIAFYDLNVSLDLPAILEAFSMAAALAMGVGTLNCYLFSVAPVWERVWAILNRPMFLLSGIFFLMETVPEPFRTLLSYNPLTHVIAKMRQGFFATYDARLVDPLYAYSVSLVCLFFGMLLLNRHHRMLLNEGA
>NZ_CP047039.1|WP_061350902.1|65942_68198_+|glycosyl-transferase-family-1
MLKFHRLRRFARILVLTGEERRYLRAIRKSGLFDRTYYRGAYPGLNPIYLKYPEKHYIAYGERLGYRPNPDFSPQAYLRYHPDVAEAGVPPFLHYVRVGHAEQRLTKELPEVVALPARGMPQVRFEHGRQTAPYAVAVHVYYPDLWPEFAARLRRLRIPFDLYVTLTYRGEETDALAEEIRADFPGAFVTPMPNRGRDILPFVTLLNAGAFDGYRAVCKFHTKKSPHRQDGDLWRKHLIEGILPETGLEEKLEAFVEAPEAGFWVADGQHYTGTQWWGSNVEATRHLLQRIEIPLDREALSFPAGSIYWVKPLVLGLLRSLQLRLEDFDLEEGQVDGTLAHAIERVLGYLTARAGQKVLQTSELRPAAAAAPAKPAFVSAFYLPQFHPVPENDAWWGKGFTEWRSVVKAPSMFEGHLQPMLPADLGFYDLRATEVMGEQAAMAREAGIDAFCVYHYWFDGRRILEAPIDRLMARPEIDFPFYLCWANESWRRNWDGLSGTVLLEQTYGAGFEEKLAADTAPYLRDPRYARPDGRRPRFVIYRPEDMPDPQASVARLREGWRRAGIGEVELGAVRFHVEGAHPVPEGLFDFWVEMPPHGLVKGPDYLFGGPDGNRMPAAMNPAFSGLIYDYAAVARRALSETYVRTLPKATIAGVMPGWDNTARRGAAGHVAYGANPATFNVWLAGALERRVPASYRRELFVNARNEWAEKAVLEPSLTFGDLNLQVMRQHLGAAEPATHLAEPPAHGMRSH
>NZ_CP047039.1|WP_009565051.1|68198_69191_+|hypothetical-protein
MARVVLHIGTHKTATTTIQDMFAHNADLLRQHGVIYPRLSRVAGHHGLVMEWNKLPDMYALPQGSIATLKQLTRDYAHVPGTLVLSSEEFSRGKPGAQVDFRAVRELLSDFESVSVVCVLREQWQFMQSIYLQASKERQPPKPSTMVDSVLKRDMTDGLWIDYNLLYDHLLSAFAPEEITFLDFDACRRHRDGVVGAMLDTLGCGLSASSLQVVHDGLSNVSPLALPTFAACVITEPDQAAPWVIDCATGAFRIEYGEEAKSCLWTYPEFQQLFAYAKERNGRLSERRKAVQPEFRISESDPEENRVYRDGLNTSFWIRCSRWIYRARRG
>NZ_CP047039.1|WP_011836244.1|69348_70707_-|hypothetical-protein
MTSDQTPARPALLVLGMHRSGTSALAGVLGRAGFALPQELMPPTEHNPRGYFESTRIFRLNDALLAAAGSSWDDWRAFDADWHLSPAAEPFHAEAQEALAAEFPGTAPIVLKDPRICRLLPFWTRALTEAGFRPLAVCTHRPAREVGASLARRNGWPEARGLLLWLRHVLDAEAQTRGRPRVFVSYDGLLADWRGTLGRIAEAFDLALPRPLDEAAPEIEAFLSADLRHAPETPAAAAGLSDWIARPEEILDRKAAGEDRPGDRETLDRIAAEVAAAAPLLADLSGAVEEQGARLEREAALRHEAQTILQQERQRLDDLTAELQLQLHHRTLHVAELERHAGELAQQLRQKTQHAAELERHAEELAQQLRQQRSHAAELERHAGELSALTHELRQQVHHKGRHVQELEAHSGELEARLLALEAEHAALLGSTSWKVTHPLRRMSLALRRPKT
>NZ_CP047039.1|WP_011836242.1|72793_73735_+|calcium-binding-protein
MPEVSPFPSLSPLSAPLAQSALAQTPAGTPGNDLLNGGPGADRLVGGDGNDTINGRDGVDRLYGGDGDDLLDGGFYHDACYGQAGNDTFRIRGVDLADDVYGGAGTDTLDLSGYTNLRLGFRVDLAAGRYDFRPEPFGPYVVKSIEIVIGSARADVLLGSRLAETLSGGLGNDRLEGRGGADVLRGMEGADALFGGTGNDLLLGGAGNDRLDGQWERDVLVGGAGNDILIGGGGADRFVFAGNFGRDRIRDFSPDMEGEWIDLRGVGAITGFGDLMANHLSEVNGHVVIEVGANRITLEGISSEMLTRDDFLF
>NZ_CP047039.1|WP_011836240.1|75261_75951_+|hypothetical-protein
MPYHLVHVGKCAGESVIRTLQPQVAGLEIYHVHDANLQLADAVLRHDPSDIFIVLTRDPVDRFVSAFEWDLHSKSLDGDGRRLKNETWRRIFGAFLTANDLAEALTDPRRERRQAAVAALRASKLHMQFDLGWYLPPQIASELPSGRTHVIRMERIGADLPHFLTSQGLQAAEAPVTKNSYKHRLPPERVTKTMSELARRNIRLASHATYATLAILESRLAGPEATVLI
>NZ_CP047039.1|WP_011836238.1|77146_78151_-|NAD-dependent-epimerase/dehydratase-family-protein
MRRILVTGTAGFIGFHLARLLLAEGFRVHGYDGMTDYYDVALKRRRHAMLLQDPNFSATEGMLEDQALFDRVADEFAPEVIVHLAAQAGVRYSVENPRAYLDANVIGSFTVMEAARRLKVAHLMMASTSSVYGANEEMPFRETDKADRQLTIYAATKKANESMGHAWAHVHGLPITMFRFFTVYGPWGRPDLALFRFVEAILEDRPIEIYNHGEMWRDFTYVDDLVRAIRLLIEAVPGGPETAVEEDSLSPAAPFRIVNIGNSDKVRLLDFVEAIEESLGRRAIRSYLPMQVGDVPATWADAGLLQRLTGYRPQTDIRDGIAQFVSWYRDYTGK
>NZ_CP047039.1|WP_011836237.1|78435_79056_-|hypothetical-protein
MRTYPRRGRGPRSDSRVLDPSAMHRAPWALPLQPILTLESSKSLSSMPAPRGAASKVIQGQFGIAPGPFKKPETELVLTVLSPLLSTVASACVYAHGIRRQKQTIRQCQNPATAARLEEMRPLALRNGHRLLAVEAAYLLFVLVLAATGLNDDPEGASFVTLILALTSGGVVALLAVTHLASDPSGSLVLPPLLLMVFGAVYPILQ
>NZ_CP047039.1|WP_080588238.1|79000_79654_-|hypothetical-protein
MGSLLRQVCPLRAGMAAARLPNRSPQALAVVGRRPPESVSGAGRARERARSGGTPAACPLRNRSAKAGAIREAVLLKIPRLAAARGEAGARRGGGRFLERPSLPGRNRESAAAPDICGMRGLHGLREARGLTARKPTAAGSPSLSGHFPVCPPGARILALACGAGADLPAPPRRTPTPRPCASRGARRGCGRTGERAGPNADLPAEGARATVRQPGP

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Crispr_ID: NZ_CP047039_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047039_2

69595-69681

Orphan

Consensus_repeat	Method
CTGCCGGAGCTGCTGGGCGAGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047039_2

>merge|NZ_CP047039|2|69595-69681|CRISPRCasFinder
CTGCCGGAGCTGCTGGGCGAGCTCTTCCGCATGGCGCTCGAGTTCGGCCGCGTGCTGCGTCTTCTGCCGGAGCTGCTGGGCCAGCTC

>NZ_CP047039|2|2|69595-69681|CRISPRCasFinder
CTGCCGGAGCTGCTGGGCGAGCTC	TTCCGCATGGCGCTCGAGTTCGGCCGCGTGCTGCGTCTT
CTGCCGGAGCTGCTGGGCCAGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047039.1\|WP_011836240.1\|75261_75951_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047039.1\|WP_002724804.1\|56739_57678_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133039
NZ_CP047039.1\|WP_011836238.1\|77146_78151_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187563
NZ_CP047039.1\|WP_011836233.1\|84003_84708_+\|H+-transporting-two-sector-ATPase-B/B'-subunit	unknown	unknown	gnl\|CDD\|132364
NZ_CP047039.1\|WP_011836181.1\|55068_56109_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
NZ_CP047039.1\|WP_017140433.1\|82811_83072_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047039.1\|WP_011836236.1\|80624_82019_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|183615
NZ_CP047039.1\|WP_011836242.1\|72793_73735_+\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NZ_CP047039.1\|WP_002724803.1\|57728_58691_-\|replication-initiator-protein-A	unknown	unknown	gnl\|CDD\|370826
NZ_CP047039.1\|WP_009565051.1\|68198_69191_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047039.1\|WP_162482827.1\|83068_83998_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|237383
NZ_CP047039.1\|WP_002724798.1\|65078_65879_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NZ_CP047039.1\|WP_080588238.1\|79000_79654_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047039.1\|WP_050988687.1\|59428_60835_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274585
NZ_CP047039.1\|WP_061350902.1\|65942_68198_+\|glycosyl-transferase-family-1	unknown	unknown	gnl\|CDD\|379549
NZ_CP047039.1\|WP_002724800.1\|62372_63194_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213187
NZ_CP047039.1\|WP_011836237.1\|78435_79056_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047039.1\|WP_009565041.1\|56112_56676_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NZ_CP047039.1\|WP_011836182.1\|54220_55072_-\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|367904
NZ_CP047039.1\|WP_011836232.1\|84697_86191_+\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183987

Protein	Function_ID	Function_description	E-value
NZ_CP047039.1\|WP_002724804.1\|56739_57678_-\|glycosyltransferase	gnl\|CDD\|133039	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	3.06441e-72
NZ_CP047039.1\|WP_011836236.1\|80624_82019_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|183615	PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.	0
NZ_CP047039.1\|WP_011836233.1\|84003_84708_+\|H+-transporting-two-sector-ATPase-B/B'-subunit	gnl\|CDD\|132364	TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.	9.17088e-17
NZ_CP047039.1\|WP_011836181.1\|55068_56109_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP047039.1\|WP_011836242.1\|72793_73735_+\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	2.71163e-15
NZ_CP047039.1\|WP_002724803.1\|57728_58691_-\|replication-initiator-protein-A	gnl\|CDD\|370826	pfam10134, RPA, Replication initiator protein A. Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.	2.32126e-121
NZ_CP047039.1\|WP_011836238.1\|77146_78151_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187563	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs. This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.34107e-167
NZ_CP047039.1\|WP_162482827.1\|83068_83998_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|237383	PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional.	3.02425e-115
NZ_CP047039.1\|WP_002724798.1\|65078_65879_+\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	2.5419e-33
NZ_CP047039.1\|WP_050988687.1\|59428_60835_+\|AAA-family-ATPase	gnl\|CDD\|274585	TIGR03453, partition_RepA, plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. [Mobile and extrachromosomal element functions, Plasmid functions].	4.83014e-59
NZ_CP047039.1\|WP_061350902.1\|65942_68198_+\|glycosyl-transferase-family-1	gnl\|CDD\|379549	pfam14307, Glyco_tran_WbsX, Glycosyltransferase WbsX. Members of this family are found in within O-antigen biosynthesis clusters in Gram negative bacteria, where they are predicted to function as glycosyltransferases.	3.29855e-148
NZ_CP047039.1\|WP_002724800.1\|62372_63194_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	1.78218e-89
NZ_CP047039.1\|WP_011836232.1\|84697_86191_+\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|183987	PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.	0
NZ_CP047039.1\|WP_009565041.1\|56112_56676_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	5.08975e-99
NZ_CP047039.1\|WP_011836182.1\|54220_55072_-\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|367904	pfam04321, RmlD_sub_bind, RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.	1.37587e-123

>NZ_CP047039.1|WP_009565051.1|68198_69191_+|hypothetical-protein
MARVVLHIGTHKTATTTIQDMFAHNADLLRQHGVIYPRLSRVAGHHGLVMEWNKLPDMYALPQGSIATLKQLTRDYAHVPGTLVLSSEEFSRGKPGAQVDFRAVRELLSDFESVSVVCVLREQWQFMQSIYLQASKERQPPKPSTMVDSVLKRDMTDGLWIDYNLLYDHLLSAFAPEEITFLDFDACRRHRDGVVGAMLDTLGCGLSASSLQVVHDGLSNVSPLALPTFAACVITEPDQAAPWVIDCATGAFRIEYGEEAKSCLWTYPEFQQLFAYAKERNGRLSERRKAVQPEFRISESDPEENRVYRDGLNTSFWIRCSRWIYRARRG
>NZ_CP047039.1|WP_061350902.1|65942_68198_+|glycosyl-transferase-family-1
MLKFHRLRRFARILVLTGEERRYLRAIRKSGLFDRTYYRGAYPGLNPIYLKYPEKHYIAYGERLGYRPNPDFSPQAYLRYHPDVAEAGVPPFLHYVRVGHAEQRLTKELPEVVALPARGMPQVRFEHGRQTAPYAVAVHVYYPDLWPEFAARLRRLRIPFDLYVTLTYRGEETDALAEEIRADFPGAFVTPMPNRGRDILPFVTLLNAGAFDGYRAVCKFHTKKSPHRQDGDLWRKHLIEGILPETGLEEKLEAFVEAPEAGFWVADGQHYTGTQWWGSNVEATRHLLQRIEIPLDREALSFPAGSIYWVKPLVLGLLRSLQLRLEDFDLEEGQVDGTLAHAIERVLGYLTARAGQKVLQTSELRPAAAAAPAKPAFVSAFYLPQFHPVPENDAWWGKGFTEWRSVVKAPSMFEGHLQPMLPADLGFYDLRATEVMGEQAAMAREAGIDAFCVYHYWFDGRRILEAPIDRLMARPEIDFPFYLCWANESWRRNWDGLSGTVLLEQTYGAGFEEKLAADTAPYLRDPRYARPDGRRPRFVIYRPEDMPDPQASVARLREGWRRAGIGEVELGAVRFHVEGAHPVPEGLFDFWVEMPPHGLVKGPDYLFGGPDGNRMPAAMNPAFSGLIYDYAAVARRALSETYVRTLPKATIAGVMPGWDNTARRGAAGHVAYGANPATFNVWLAGALERRVPASYRRELFVNARNEWAEKAVLEPSLTFGDLNLQVMRQHLGAAEPATHLAEPPAHGMRSH
>NZ_CP047039.1|WP_002724798.1|65078_65879_+|ABC-transporter-permease
MTGLSGLLAGRRFLWGRSVLSLMLREMATSYGRSPGGYLWAVAEPVAALTLLTVVFSFLMRSPPLGNNFPLFYATGYLPFMYYTALTAKIGQAIRFSRPLLAYPAVSFFDAILSRFLLNTLTNLVVFVIVMVGIIAFYDLNVSLDLPAILEAFSMAAALAMGVGTLNCYLFSVAPVWERVWAILNRPMFLLSGIFFLMETVPEPFRTLLSYNPLTHVIAKMRQGFFATYDARLVDPLYAYSVSLVCLFFGMLLLNRHHRMLLNEGA
>NZ_CP047039.1|WP_002724800.1|62372_63194_-|ABC-transporter-ATP-binding-protein
MIELRNVSKSYVLNGTRKVVARDLNFTFPSGESVGLLGRNGAGKSSLLRMLAGTMLPDTGEILSSGTISWPVGFSGSFHPELTGAQNVRFVARLYGVDTEAMIAFVRDFAEIGQHFHLPVRSYSSGMRSRLAFGISMAVPFDTYLIDEVTAVGDAAFSAKSNAILRARLEESGAVIVSHSMPLLKKLCRSGAVLHDGQLFYYERIEQAIRHHESMMRGALPRWMRGDLDEGEGEEAGAAAPGPRARARAGAARAGGGRAARPGPASGTSEPRG
>NZ_CP047039.1|WP_050988687.1|59428_60835_+|AAA-family-ATPase
MRKSPPAREPQVPLPPYFNISPDAALAELEAPLTTAGFAEIARSCAQGRDDLAARGLDAEGRRSLRLFSTWEITRYLIPVATAHFRRVLKANPDLPQGISETEGGAKWFTLDEVLRLRAHFAAEGSKAKEYRPYRPAGLPAKLVAVANFKGGVGKTSTAAHLAMSAALDGYRVLVIDLDSQGSMTSIFGGRVADEWGTVFPLLARHYAAHLQAENRARVARGDPPVPMDETLTEAQKIRAGDLIAKTHWPNIDLIGAQLNLYWAEFQIPVWRMQGRSWKLWDALTDVLAEDGVLDRYDVIFLDTPPALGYLTINGLAAADILLVPLGASFLEFDSTGRFFDMLHSTFRSIEEGENIAARALGREELAFEWDAVRAVLTRYDGAQQAEMAALMQAYMGRTMAPERQDFTALIGQAGEQVNGIYEADYRDFNRDTYIRGRETFDATYAAFKRLLVGIWRREELAAADAAE
>NZ_CP047039.1|WP_002724803.1|57728_58691_-|replication-initiator-protein-A
MADFFICDILDALPKDDMASMEHPVFSLATRPDLRVLDYAHNGVRITVTPSVRGLATLFDKDILIYCVSQLMAALNAGRAISRTLHLTAHDLMTATHRETSGDGYQRLREAFERLAGTRITTNMEVGGREITTGFGLIESWQIVRRSRGGRMVQVMVTLSEWLFQAVLTKSVLTLSRDYFRLRKPLERRIYELARKHCGQQPEWRVSIATLAKKSGSASPLRVFRKMIRDMIAADSLPGYSLAEEPGDLLCVTRRAAVLAPGLAPALRDTTLERVRARMPGWDVHALVAEWHAFWHSSGQPRLRSADAAFLGWIERRVPG
>NZ_CP047039.1|WP_002724804.1|56739_57678_-|glycosyltransferase
MTDAPPPRIALLLATYNGAANLEAQLESFAAQTLRPTWLVVSDDGSTDATRALLAAFAARHPWLALRLVEGPCRGSAQNFLHLLGQVPPEADMAALSDQDDVWLPEKLARGAAAMADLPADLPVLYGGSSWICDAELGNRRPYPLPVRPPGFRHALVQNIAGGNTMMLNRGAIALLAAASREPERIVVHDWWIYQIVSGAGGRVIFDPVPLLLYRQHGGNLIGANDGFRAKYRRLRMLLSGGFRQWNAINIRALSASAHRFTPENRRLLAEFEALRRAGPWGRLRQLKRIGLYRQGLPGRLSLWLAAVLGRI
>NZ_CP047039.1|WP_009565041.1|56112_56676_-|dTDP-4-dehydrorhamnose-3,5-epimerase
MQIEETELPGVLILTPRVFGDARGSFCEAWNRATLQGLGIDLDFVQDNQSISAPVGTVRGLHYQAPPHAQDKLVRVGHGAILDVAVDVRVGSPTYGRWVGVELTAGNARQLLVPKGFLHGFVTREPDTVVLYKTTDVYAPDCDGAVHFADPDLGIDWGIDPASAVLSDKDARAPRFADWTSPFSIEV
>NZ_CP047039.1|WP_011836181.1|55068_56109_-|dTDP-glucose-4,6-dehydratase
MKLIVTGGAGFIGSAVVRKAVADGHHVVNLDCLTYAACLDNLASVAGAPNYVFEKADIRDAEAMARIFATHRPDAVMHLAAESHVDRSIDGPGAFIDTNVRGTYVLLEAARAYWVGQGKPQGFRFHHISTDEVFGTLGETGQFTEETPYAPNSPYSASKAASDHLVRAWGETYGLPYVLTNCSNNYGPFHFPEKLIPVVILKALAGAPIPVYGKGENVRDWLYVEDHADALLTVLARGENHRSYNIGGENEAKNIDIVRKICAILDARRPKATPYADQIAFVTDRPGHDLRYAIDPTRIRTELGWRPSVTLDEGLERTVDWYLANEPWWRALQDRAGVGERLGVKA
>NZ_CP047039.1|WP_011836182.1|54220_55072_-|dTDP-4-dehydrorhamnose-reductase
MILVFGRTGQVARELARQAPDARFLGRDEADLADPEACARAIREAKPDAVINAAAWTAVDRAEEEEAPATVVNGEAPGAMARACAELGIPFVQISTDYVFDGSGTRPWQPGDPVGPLGAYGRSKLAGEEAVRAAGGPHAILRTSWVFSAHGANFVKTMLRLGATRDRLTVVCDQVGGPTPAADIAAACLAMARGLAARPDLSGTYHLSGGPDVSWADFAREIFRQAELDCLVADIASADYPQKAHRPANSRMDCSDLARFGLSRPDWRQGLARVLADLQEVSE
>NZ_CP047039.1|WP_011836242.1|72793_73735_+|calcium-binding-protein
MPEVSPFPSLSPLSAPLAQSALAQTPAGTPGNDLLNGGPGADRLVGGDGNDTINGRDGVDRLYGGDGDDLLDGGFYHDACYGQAGNDTFRIRGVDLADDVYGGAGTDTLDLSGYTNLRLGFRVDLAAGRYDFRPEPFGPYVVKSIEIVIGSARADVLLGSRLAETLSGGLGNDRLEGRGGADVLRGMEGADALFGGTGNDLLLGGAGNDRLDGQWERDVLVGGAGNDILIGGGGADRFVFAGNFGRDRIRDFSPDMEGEWIDLRGVGAITGFGDLMANHLSEVNGHVVIEVGANRITLEGISSEMLTRDDFLF
>NZ_CP047039.1|WP_011836240.1|75261_75951_+|hypothetical-protein
MPYHLVHVGKCAGESVIRTLQPQVAGLEIYHVHDANLQLADAVLRHDPSDIFIVLTRDPVDRFVSAFEWDLHSKSLDGDGRRLKNETWRRIFGAFLTANDLAEALTDPRRERRQAAVAALRASKLHMQFDLGWYLPPQIASELPSGRTHVIRMERIGADLPHFLTSQGLQAAEAPVTKNSYKHRLPPERVTKTMSELARRNIRLASHATYATLAILESRLAGPEATVLI
>NZ_CP047039.1|WP_011836238.1|77146_78151_-|NAD-dependent-epimerase/dehydratase-family-protein
MRRILVTGTAGFIGFHLARLLLAEGFRVHGYDGMTDYYDVALKRRRHAMLLQDPNFSATEGMLEDQALFDRVADEFAPEVIVHLAAQAGVRYSVENPRAYLDANVIGSFTVMEAARRLKVAHLMMASTSSVYGANEEMPFRETDKADRQLTIYAATKKANESMGHAWAHVHGLPITMFRFFTVYGPWGRPDLALFRFVEAILEDRPIEIYNHGEMWRDFTYVDDLVRAIRLLIEAVPGGPETAVEEDSLSPAAPFRIVNIGNSDKVRLLDFVEAIEESLGRRAIRSYLPMQVGDVPATWADAGLLQRLTGYRPQTDIRDGIAQFVSWYRDYTGK
>NZ_CP047039.1|WP_011836237.1|78435_79056_-|hypothetical-protein
MRTYPRRGRGPRSDSRVLDPSAMHRAPWALPLQPILTLESSKSLSSMPAPRGAASKVIQGQFGIAPGPFKKPETELVLTVLSPLLSTVASACVYAHGIRRQKQTIRQCQNPATAARLEEMRPLALRNGHRLLAVEAAYLLFVLVLAATGLNDDPEGASFVTLILALTSGGVVALLAVTHLASDPSGSLVLPPLLLMVFGAVYPILQ
>NZ_CP047039.1|WP_080588238.1|79000_79654_-|hypothetical-protein
MGSLLRQVCPLRAGMAAARLPNRSPQALAVVGRRPPESVSGAGRARERARSGGTPAACPLRNRSAKAGAIREAVLLKIPRLAAARGEAGARRGGGRFLERPSLPGRNRESAAAPDICGMRGLHGLREARGLTARKPTAAGSPSLSGHFPVCPPGARILALACGAGADLPAPPRRTPTPRPCASRGARRGCGRTGERAGPNADLPAEGARATVRQPGP
>NZ_CP047039.1|WP_011836236.1|80624_82019_+|F0F1-ATP-synthase-subunit-beta
MTGRVTSVRGPVLDIRVEGPLPAIGDVVEVGSLPVVAEIQAHLGAADVRAIALHSTQGIARGETVRTTGGPLRVPTGPAVLGRLLDVAGRPADLGPPIPAGAPRAPILHPAPPLAAQDARFQVFSTGIKVLDLLAPLAQGGKTAMFGGAGVGKTVLVMELIRAMVSGYDGISVFAGVGERSREGHEMLGEMKASGVLDRTVLVYGQMNEPPGARWRVPLTALTIAEGFRDGEGRNVLLLIDNVFRFVQAGAEVSGLLGRMPSRVGYQPTLETEVAALQERIASVGRASVTAIEAVYVPADDFTDPAVTAISAHVDSTVVLSRQLAAEGIYPAIDPLATTSVLLDPAVVGEEHARVAGRLKEAIEHYHELRDVIALLGIEELGREEQLMVGRARKLQRFLTQPFFVAAAYTGMEGRSVPVAETVQGCAAILGGECDDWDEGSLYMIGTLAEARAREEARRRKGAA
>NZ_CP047039.1|WP_017140433.1|82811_83072_+|hypothetical-protein
MTDLLLPLAALGAGTLAGALHFATLRRLSDRLLRGDLGAIPLQLLRLALLAAFLVLCSRGGATTLLAAAAGILGGRALILRRERAK
>NZ_CP047039.1|WP_162482827.1|83068_83998_+|F0F1-ATP-synthase-subunit-A
MIESPLAERIAFTLGPLAVSETVVVTWGVMAVLALGSWAVTRRLALVPGRGQAALELVVTALDAQILSTLAGDPGRVRALIGTLLLFVLTCNWSSLIPGVEPPTAHLETDAALALIVFLTTIGFGIRAQGLWGWLRAFARPTWAMIPLNLVEQVTRSVSLMLRLFGNVMSGVFVLGIVLSLAGLLVPIPLMALDLLTGAVQAYIFAILALVFIASAVETAPQRDRPVTPETVQIASILGAAFAVGIGSLGPALGEGRAVAAAMEAIARQPEAAGTLSRTLFVGLAMIETMAIYCLVIALLLLFANPFTG
>NZ_CP047039.1|WP_011836233.1|84003_84708_+|H+-transporting-two-sector-ATPase-B/B'-subunit
MTFDWLTFAVQIANVLILLAILRHVLFRPVAAMIAERQRVLTASLGAAEAAEARAHAAEAEAASAAAETLRQRAALLEEARQEAETLRRRLLAEARDAAAATARAAEAEAARTVEAAGAETLRRARDLALAIVGRALAAQPVPPDAAGYARRLAEALAHLPPDRRAALASGAGLRLAAPAPLAEVPEVAGLPPLPVETDPALIAGLELRSANGVLHNSLAHDIGRIAEALTHER
>NZ_CP047039.1|WP_011836232.1|84697_86191_+|F0F1-ATP-synthase-subunit-alpha
MSGDPGLEALKARVAEVPLGPEIEETGRIATLADGLVEVEGLPGARLGEVVRFAGGAEGLVLTLDPETVQVALLDPGAALGSGTEVRRTGQLLSVPVGQGLLGRVVDPLGRPLDGLPAILPEARLEIERPAPGIVDRDMVAEPVETGLLVVDALFAVGRGQRELIIGERATGKTSLAVDAIVNQAASDIVCFYVAIGQRTTAVRRVIETVREKGAFARTVFVVAPATASPGLRWIAPFAATSMAEWVRDRGGHALIVYDDLTKHAAVHRELALLARQPPGREAYPGDIFYLHARLLERSAKLSAVNGGGSLTALPIAEIEAGNLSAYIPTNLISIADGQIVTSAALFAANQRPAVDIGLSVSRVGGKAQRGALKAVAGRVRLDYAQYLEMKMFSRFGGFGDAALRARLARGERIGALLAQPRTTPLSTPVQVALLAALAEGALDDVPLEDLARLKAALGPVLAADASLGPFRAAPDRLEPETRAALLACVRRAREAP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	NZ_CP030273	Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence	67220-67252	0	1.0
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	CP047033	Rhodobacter sphaeroides strain DSM 158 plasmid pEA, complete sequence	60898-60930	0	1.0
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	NC_009040	Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence	21550-21582	0	1.0
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	NZ_CP047039	Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence	60874-60906	0	1.0
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	NZ_CP015213	Rhodobacter sphaeroides strain MBTLJ-13 plasmid b, complete sequence	104690-104722	0	1.0
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	NZ_CP051470	Rhodobacter sphaeroides strain CH10 plasmid pRspCH10A, complete sequence	19476-19508	0	1.0
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	NZ_CP015290	Rhodobacter sphaeroides strain MBTLJ-20 plasmid b, complete sequence	3847-3879	0	1.0
NZ_CP047039_2	2.1\|69619\|39\|NZ_CP047039\|CRISPRCasFinder	69619-69657	39	NZ_CP030273	Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence	75966-76004	0	1.0
NZ_CP047039_2	2.1\|69619\|39\|NZ_CP047039\|CRISPRCasFinder	69619-69657	39	CP047033	Rhodobacter sphaeroides strain DSM 158 plasmid pEA, complete sequence	69648-69686	0	1.0
NZ_CP047039_2	2.1\|69619\|39\|NZ_CP047039\|CRISPRCasFinder	69619-69657	39	NZ_CP047039	Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence	69619-69657	0	1.0
NZ_CP047039_2	2.1\|69619\|39\|NZ_CP047039\|CRISPRCasFinder	69619-69657	39	NZ_CP015213	Rhodobacter sphaeroides strain MBTLJ-13 plasmid b, complete sequence	113436-113474	0	1.0
NZ_CP047039_2	2.1\|69619\|39\|NZ_CP047039\|CRISPRCasFinder	69619-69657	39	NZ_CP051470	Rhodobacter sphaeroides strain CH10 plasmid pRspCH10A, complete sequence	10724-10762	0	1.0
NZ_CP047039_2	2.1\|69619\|39\|NZ_CP047039\|CRISPRCasFinder	69619-69657	39	NZ_CP015290	Rhodobacter sphaeroides strain MBTLJ-20 plasmid b, complete sequence	119408-119446	0	1.0
NZ_CP047039_2	2.1\|69619\|39\|NZ_CP047039\|CRISPRCasFinder	69619-69657	39	NC_011960	Rhodobacter sphaeroides KD131 plasmid pRSKD131B, complete sequence	63100-63138	1	0.974
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	NC_011960	Rhodobacter sphaeroides KD131 plasmid pRSKD131B, complete sequence	72598-72630	2	0.939
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	CP036421	Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence	28105-28137	2	0.939
NZ_CP047039_2	2.1\|69619\|39\|NZ_CP047039\|CRISPRCasFinder	69619-69657	39	NC_009040	Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence	30261-30299	2	0.949
NZ_CP047039_2	2.1\|69619\|39\|NZ_CP047039\|CRISPRCasFinder	69619-69657	39	CP036421	Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence	18781-18819	3	0.923
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	291403-291435	7	0.788
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1573927-1573959	7	0.788
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	558458-558490	7	0.788
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	MK864266	Gordonia phage Arri, complete genome	8692-8724	9	0.727
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	MN284907	Gordonia phage Fireball, complete genome	8624-8656	10	0.697
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	MK864264	Gordonia phage VanDeWege, complete genome	8812-8844	10	0.697
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	MH479910	Gordonia phage Danyall, complete genome	8520-8552	10	0.697
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	MT639651	Gordonia phage Portcullis, complete genome	8580-8612	10	0.697
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	MH479917	Gordonia phage KimmyK, complete genome	8648-8680	10	0.697
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	MH669015	Gordonia phage TillyBobJoe, complete genome	8335-8367	10	0.697
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	MK814761	Gordonia phage SmokingBunny, complete genome	8499-8531	10	0.697
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	KX557286	Gordonia phage Twister6, complete genome	8431-8463	10	0.697
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	MK864267	Gordonia phage Valary, complete genome	8884-8916	10	0.697
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	MK967381	Gordonia phage RogerDodger, complete genome	8884-8916	10	0.697
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	MT310872	Gordonia phage Evamon, complete genome	8501-8533	10	0.697
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	MT521998	Gordonia phage Jambalaya, complete genome	8332-8364	10	0.697
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	MK864265	Gordonia phage Barb, complete genome	8648-8680	10	0.697
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	NC_030913	Gordonia phage Wizard, complete genome	8624-8656	10	0.697
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	MK305889	Gordonia phage Mutzi, complete genome	8520-8552	10	0.697
NZ_CP047039_1	1.1\|60874\|33\|NZ_CP047039\|CRISPRCasFinder	60874-60906	33	MN010760	Gordonia phage Nubi, complete genome	8521-8553	10	0.697

1. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to NZ_CP030273 (Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence) position: , mismatch: 0, identity: 1.0

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
ggggggtcggcagggcggcacggcgggggcaaa	Protospacer
*********************************

2. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to CP047033 (Rhodobacter sphaeroides strain DSM 158 plasmid pEA, complete sequence) position: , mismatch: 0, identity: 1.0

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
ggggggtcggcagggcggcacggcgggggcaaa	Protospacer
*********************************

3. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to NC_009040 (Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence) position: , mismatch: 0, identity: 1.0

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
ggggggtcggcagggcggcacggcgggggcaaa	Protospacer
*********************************

4. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to NZ_CP047039 (Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence) position: , mismatch: 0, identity: 1.0

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
ggggggtcggcagggcggcacggcgggggcaaa	Protospacer
*********************************

5. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to NZ_CP015213 (Rhodobacter sphaeroides strain MBTLJ-13 plasmid b, complete sequence) position: , mismatch: 0, identity: 1.0

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
ggggggtcggcagggcggcacggcgggggcaaa	Protospacer
*********************************

6. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to NZ_CP051470 (Rhodobacter sphaeroides strain CH10 plasmid pRspCH10A, complete sequence) position: , mismatch: 0, identity: 1.0

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
ggggggtcggcagggcggcacggcgggggcaaa	Protospacer
*********************************

7. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to NZ_CP015290 (Rhodobacter sphaeroides strain MBTLJ-20 plasmid b, complete sequence) position: , mismatch: 0, identity: 1.0

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
ggggggtcggcagggcggcacggcgggggcaaa	Protospacer
*********************************

8. spacer 2.1|69619|39|NZ_CP047039|CRISPRCasFinder matches to NZ_CP030273 (Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence) position: , mismatch: 0, identity: 1.0

ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	CRISPR spacer
ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	Protospacer
***************************************

9. spacer 2.1|69619|39|NZ_CP047039|CRISPRCasFinder matches to CP047033 (Rhodobacter sphaeroides strain DSM 158 plasmid pEA, complete sequence) position: , mismatch: 0, identity: 1.0

ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	CRISPR spacer
ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	Protospacer
***************************************

10. spacer 2.1|69619|39|NZ_CP047039|CRISPRCasFinder matches to NZ_CP047039 (Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence) position: , mismatch: 0, identity: 1.0

ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	CRISPR spacer
ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	Protospacer
***************************************

11. spacer 2.1|69619|39|NZ_CP047039|CRISPRCasFinder matches to NZ_CP015213 (Rhodobacter sphaeroides strain MBTLJ-13 plasmid b, complete sequence) position: , mismatch: 0, identity: 1.0

ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	CRISPR spacer
ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	Protospacer
***************************************

12. spacer 2.1|69619|39|NZ_CP047039|CRISPRCasFinder matches to NZ_CP051470 (Rhodobacter sphaeroides strain CH10 plasmid pRspCH10A, complete sequence) position: , mismatch: 0, identity: 1.0

ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	CRISPR spacer
ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	Protospacer
***************************************

13. spacer 2.1|69619|39|NZ_CP047039|CRISPRCasFinder matches to NZ_CP015290 (Rhodobacter sphaeroides strain MBTLJ-20 plasmid b, complete sequence) position: , mismatch: 0, identity: 1.0

ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	CRISPR spacer
ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	Protospacer
***************************************

14. spacer 2.1|69619|39|NZ_CP047039|CRISPRCasFinder matches to NC_011960 (Rhodobacter sphaeroides KD131 plasmid pRSKD131B, complete sequence) position: , mismatch: 1, identity: 0.974

ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	CRISPR spacer
ttccgcatggcgctccagttcggccgcgtgctgcgtctt	Protospacer
*************** ***********************

15. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to NC_011960 (Rhodobacter sphaeroides KD131 plasmid pRSKD131B, complete sequence) position: , mismatch: 2, identity: 0.939

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
cgggggccggcagggcggcacggcgggggcaaa	Protospacer
 *****.**************************

16. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to CP036421 (Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.939

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
cgggggccggcagggcggcacggcgggggcaaa	Protospacer
 *****.**************************

17. spacer 2.1|69619|39|NZ_CP047039|CRISPRCasFinder matches to NC_009040 (Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence) position: , mismatch: 2, identity: 0.949

ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	CRISPR spacer
ttccgcatggcgctccagttcggcctcgtgctgcgtctt	Protospacer
*************** ********* *************

18. spacer 2.1|69619|39|NZ_CP047039|CRISPRCasFinder matches to CP036421 (Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.923

ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	CRISPR spacer
tccggcatggcgctcgagttcggccgcctgctgcgtctt	Protospacer
*.* *********************** ***********

19. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.788

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
gccgggtcgccagggcggcaaggcgggcgaaca	Protospacer
*  ****** ********** ****** * * *

20. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 7, identity: 0.788

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
gccgggtcgccagggcggcaaggcgggcgaaca	Protospacer
*  ****** ********** ****** * * *

21. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.788

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
gccgggtcgccagggcggcaaggcgggcgaaca	Protospacer
*  ****** ********** ****** * * *

22. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to MK864266 (Gordonia phage Arri, complete genome) position: , mismatch: 9, identity: 0.727

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agatccttggcagggcggtccggcgggggcaac	Protospacer
.*.   *.**********. ************

23. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to MN284907 (Gordonia phage Fireball, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

24. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to MK864264 (Gordonia phage VanDeWege, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

25. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to MH479910 (Gordonia phage Danyall, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

26. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to MT639651 (Gordonia phage Portcullis, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

27. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to MH479917 (Gordonia phage KimmyK, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

28. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to MH669015 (Gordonia phage TillyBobJoe, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

29. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to MK814761 (Gordonia phage SmokingBunny, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

30. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to KX557286 (Gordonia phage Twister6, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

31. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to MK864267 (Gordonia phage Valary, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

32. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to MK967381 (Gordonia phage RogerDodger, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

33. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to MT310872 (Gordonia phage Evamon, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

34. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to MT521998 (Gordonia phage Jambalaya, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

35. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to MK864265 (Gordonia phage Barb, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

36. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to NC_030913 (Gordonia phage Wizard, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

37. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to MK305889 (Gordonia phage Mutzi, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

38. spacer 1.1|60874|33|NZ_CP047039|CRISPRCasFinder matches to MN010760 (Gordonia phage Nubi, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

50447 : 60835

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002724637.1\|50447_51284_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	6.0e-49	41.1
WP_011836184.1\|51484_52210_+	sulfotransferase	NA	NA	NA	NA
WP_011836183.1\|52576_53359_+	deacetylase sulfotransferase	NA	NA	NA	NA
WP_002724812.1\|53333_54224_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	7.7e-87	54.9
WP_011836182.1\|54220_55072_-	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	3.1e-32	38.5
WP_011836181.1\|55068_56109_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-91	52.1
WP_009565041.1\|56112_56676_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	7.7e-32	43.5
WP_002724804.1\|56739_57678_-	glycosyltransferase	NA	NA	NA	NA
WP_002724803.1\|57728_58691_-	replication initiator protein A	A0A0K1Y6J9	Rhodobacter_phage	1.3e-58	39.1
WP_050988687.1\|59428_60835_+	AAA family ATPase	A0A0K2FLP4	Brevibacillus_phage	2.1e-06	26.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047038

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP047037

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP047039

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection