CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041764	Serratia sp. KUDC3025 chromosome, complete genome	2 crisprs	csa3,WYL,DinG,DEDDh,cas1,cas3	0	2	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041764_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041764_1

1658167-1658316

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTCGCGCGGGGAACAC	PILER-CR

2 spacers

cas1

The CRISPR arrays of NZ_CP041764_1

>merge|NZ_CP041764|1|1658167-1658316|CRISPRCasFinder,PILER-CR
AGATTGATCCCCGCTCGCGCGGGAACACAGACAGAAATCACCTGGGGTGAGAAGTTATACCGGTTTATCCCCGCTCGCGCGGGGAACACATCTTCACCATCAGTGTTTCCGGCTGCTGTGACGGTTTATCCCCGCTCGCGCGGGGAACAC

>NZ_CP041764|1|1|1658167-1658316|CRISPRCasFinder
AGATTGATCCCCGCTCGCGCGGGAACACA	GACAGAAATCACCTGGGGTGAGAAGTTATAC
CGGTTTATCCCCGCTCGCGCGGGGAACAC	ATCTTCACCATCAGTGTTTCCGGCTGCTGTGA
CGGTTTATCCCCGCTCGCGCGGGGAACAC

>NZ_CP041764|1|1|1658170-1658316|PILER-CR
TTGATCCCCGCTCGCGCGGGAACACAGAC	AGAAATCACCTGGGGTGAGAAGTTATACCGGTTTATC
CCCGCTCGCGCGGGGAACACATCTTCACC	ATCAGTGTTTCCGGCTGCTGTGACGGTTTATC
CCCGCTCGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041764.1\|WP_160028799.1\|1663022_1664462_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340879
NZ_CP041764.1\|WP_160028801.1\|1665711_1666923_-\|selenium-metabolism-membrane-protein-YedE/FdhT	unknown	unknown	gnl\|CDD\|236845
NZ_CP041764.1\|WP_160028791.1\|1651251_1651653_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041764.1\|WP_160028792.1\|1651649_1652354_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041764.1\|WP_105229533.1\|1668899_1668980_-\|protein-YrbN	unknown	unknown	gnl\|CDD\|380282
NZ_CP041764.1\|WP_160028796.1\|1660784_1661756_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_CP041764.1\|WP_160028795.1\|1659648_1660803_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP041764.1\|WP_105229544.1\|1656252_1657248_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP041764.1\|WP_160028803.1\|1667053_1668910_-\|DEAD/DEAH-family-ATP-dependent-RNA-helicase	unknown	unknown	gnl\|CDD\|236941
NZ_CP041764.1\|WP_160031378.1\|1653409_1654351_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP041764.1\|WP_105229537.1\|1664583_1665450_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|375319
NZ_CP041764.1\|WP_160028790.1\|1650621_1651110_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP041764.1\|WP_145961161.1\|1654701_1654995_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP041764.1\|WP_160028793.1\|1657259_1658138_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP041764.1\|WP_160028789.1\|1649482_1650109_-\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|224199
NZ_CP041764.1\|WP_160028794.1\|1658512_1659652_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP041764.1\|WP_105229545.1\|1654981_1655485_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP041764.1\|WP_105233191.1\|1655478_1656000_-\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_CP041764.1\|WP_105229536.1\|1665472_1665712_-\|sulfurtransferase-like-selenium-metabolism-protein-YedF	unknown	unknown	gnl\|CDD\|236822
NZ_CP041764.1\|WP_160028797.1\|1661966_1662980_+\|luciferase-like-monooxygenase	unknown	unknown	gnl\|CDD\|182505

Protein	Function_ID	Function_description	E-value
NZ_CP041764.1\|WP_160028799.1\|1663022_1664462_-\|MFS-transporter	gnl\|CDD\|340879	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial, fungal, and archaeal multidrug resistance (MDR) transporters including several proteins from Bacilli such as methylenomycin A resistance protein (also called MMR peptide), tetracycline resistance protein (TetB), and lincomycin resistance protein LmrB, as well as fungal proteins such as vacuolar basic amino acid transporters, which are involved in the transport into vacuoles of the basic amino acids histidine, lysine, and arginine in Saccharomyces cerevisiae, and aminotriazole/azole resistance proteins. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin while TetB resistance to tetracycline by an active tetracycline efflux. MMR-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.84624e-39
NZ_CP041764.1\|WP_160028801.1\|1665711_1666923_-\|selenium-metabolism-membrane-protein-YedE/FdhT	gnl\|CDD\|236845	PRK11099, PRK11099, putative inner membrane protein; Provisional.	0
NZ_CP041764.1\|WP_105229533.1\|1668899_1668980_-\|protein-YrbN	gnl\|CDD\|380282	NF033440, small_YrbN, protein YrbN. YrbN, a small protein of only 26 amino acids, is found in at least these genera: Escherichia, Salmonella, Enterobacter, Klebsiella, and Yersinia. It is known to be expressed in E. coli.	9.1154e-09
NZ_CP041764.1\|WP_160028796.1\|1660784_1661756_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	8.17609e-39
NZ_CP041764.1\|WP_160028795.1\|1659648_1660803_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	8.84463e-20
NZ_CP041764.1\|WP_160028794.1\|1658512_1659652_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	4.905e-24
NZ_CP041764.1\|WP_160028803.1\|1667053_1668910_-\|DEAD/DEAH-family-ATP-dependent-RNA-helicase	gnl\|CDD\|236941	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional.	0
NZ_CP041764.1\|WP_160031378.1\|1653409_1654351_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP041764.1\|WP_105229537.1\|1664583_1665450_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|375319	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain. This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.	1.36978e-48
NZ_CP041764.1\|WP_160028790.1\|1650621_1651110_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	4.62331e-42
NZ_CP041764.1\|WP_145961161.1\|1654701_1654995_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	6.11462e-41
NZ_CP041764.1\|WP_160028793.1\|1657259_1658138_+\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP041764.1\|WP_160028789.1\|1649482_1650109_-\|LysE-family-transporter	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	9.4419e-29
NZ_CP041764.1\|WP_105229544.1\|1656252_1657248_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	1.47266e-117
NZ_CP041764.1\|WP_105229545.1\|1654981_1655485_-\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	8.76114e-54
NZ_CP041764.1\|WP_105233191.1\|1655478_1656000_-\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	3.13673e-70
NZ_CP041764.1\|WP_105229536.1\|1665472_1665712_-\|sulfurtransferase-like-selenium-metabolism-protein-YedF	gnl\|CDD\|236822	PRK11018, PRK11018, putative sulfurtransferase YedF.	3.31176e-50
NZ_CP041764.1\|WP_160028797.1\|1661966_1662980_+\|luciferase-like-monooxygenase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0

>NZ_CP041764.1|WP_160028793.1|1657259_1658138_+|U32-family-peptidase
MKYALGPVLYYWPKTETESFYQQAMRSSADIIYLGESVCTKRREMKVGDWLALAKTVAQSGKQVVLSTLALLQAPSELNELKRYVENGEFLIEANDLGTVNMAAERGLPFVAGHALNCYNAYTLRLLHKQGMTRWCMPVELSRDWLGKVLEQCGELGFRRGFEVEVLGYGHLPLAYSARCFTARSENRGKDECETCCIKYPQGRAMRSQEDQQVFVLNGIQTMSGYCYNLGNELSGMQELVDIVRLSPQGVETLTMLEQFRANENAQQPLALAGSSDCNGYWRRVAGLELVQ
>NZ_CP041764.1|WP_105229544.1|1656252_1657248_+|U32-family-peptidase
MELLCPAGNLPALKAAVDNGADAVYIGLKDDTNARHFAGLNFSEKKLQEAVEYVHRHGRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYQRHFAVHRVVLPRVLSMHQVKQLARTSPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGMESRLNDVLIDRYQEGENAGYPTLCKGRYLVDDVRYHALEEPTSLNTLALLPELLAANIASVKIEGRQRSPAYVSQVARVWRQAIDRCIADPAGYQPDAGWMAALGAMSEGTQTTLGAYHRKWQ
>NZ_CP041764.1|WP_105233191.1|1655478_1656000_-|SCP2-domain-containing-protein
MLEKLRSRIVRQGPSLLRVPLKLTPFALQRQLLEQVLGWQFRQALADGDLEFLESRWLKIEVRDLALQWFMTVENDRLVVRQHAQADVSFSGDANDLILIAARKQDPDTLFFQRRLQIEGDTELGLYVKNLMDAIELEAMPAPLRIGLLQLAEFVEAGLQEGAEPSSRVVAPC
>NZ_CP041764.1|WP_105229545.1|1654981_1655485_-|N-acetyltransferase
MLIRVEIPVDAAGIDALLRSAFGRDDEADLVRQLREDGLLTLGVVATDDEGGVVGYAAFSPVDVEGEDRQWVGLAPLAVEERLRRQGLGEKLVYEGLDALNEFSYAAVVVLGEPAYYSRFGFKPAAEFGLSCRWPGCEQAFQVYPLAQDALDGVNGAVEYAAPFNRF
>NZ_CP041764.1|WP_145961161.1|1654701_1654995_+|GIY-YIG-nuclease-family-protein
MAETTTWHLYMLRLPSGMLYTGITTDVARRLAQHQAGKGAKALRGKGELQLAFHCAVGDRSLALRLEYRIKQLSKVQKERLVSHPPLSLDYLLVKNG
>NZ_CP041764.1|WP_160031378.1|1653409_1654351_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MLHSKRANLYYLQYCRVLVNGGRVEYVTDEGRQSLYWNISIANTTVVMLGTGTSVTQAAMREFAKAGVLVGFCGGGGTPLYAANEVEVDVSWLTSQSEYRATEYLQHWVSFWFDEQYRLAAAVAFQRVRIAKIKQHWLSPAMQRESGFNLSQERLLQLLSRYENSLADCRNGTDLLTQEAVMTKALYKLAAQAVSYGDFTRAKRGGGADVANRFLDHGNYLAYGLAAVATWVIGLPHGLAVLHGKTRRGGLVFDVADLIKDALILPQAFIAAMEGEDEQTFRQRCLNGFQKAQALDVMIDALQDTALQLSQVA
>NZ_CP041764.1|WP_160028792.1|1651649_1652354_-|hypothetical-protein
MSKREDLIDIRDVSTAQYGLVYSEILGWLDLGHAAGADIRKVIEQMDVGERKPEPYYEVMYFQSMYKFVHSLGIGVHTRWRIKKGCDQASRHSIVLAMMMRTALRFENLQASVPFSWVTDSGFSAEDLVSDLLGFYRVIRPMNYFPLLRLISRQEALKRWDHYGPIGNYKNKLFRPMLFPDPVKNKSAKPKYGELPPFMKSIVPFSNFQGDTVKIVVDHGRHMNFGDLPQGIFR
>NZ_CP041764.1|WP_160028791.1|1651251_1651653_-|hypothetical-protein
MIKRTKIFSIVFITILLFGCYKVASVAMTDSTDYSRADWLAYKLIAPDEVNNAPFLTDDTVIHFRAADGASPQIDEIEYGKNVDEAVLVDYLESLGYRHVDDPVFGKRWAQESSGRSAYIAKTEDAIKLTFTH
>NZ_CP041764.1|WP_160028790.1|1650621_1651110_+|winged-helix-turn-helix-transcriptional-regulator
MPLDMTEMKILRLLQDDARVTNQALAEKIGMSASPCWRKVRKLEEEEVIQGYRAVLDRKKIGLGVMVFIRVAIDSHSETEAKKFEEEVTALEDVVACYSIGGDADFLLQVVASDLDSYADFAMSVVRRLPGIKEMQSMFVLKEIKPLVSYPIKKTTQTKNGQ
>NZ_CP041764.1|WP_160028789.1|1649482_1650109_-|LysE-family-transporter
MLGTAQIISYAAALGLAAAVPGPGMTALVARSVSGGAVTGFTMLTGLILGDLIYLSTAVFGLAVIAHTYTSLFTLINWAAACYLSFLAWQFWRYQPQAVNIDQKATRRELTSAWLSGLTITLGNPKTIAFYLAILPLVISLDHVSLQVWGTMLVPLTMLVLLLVGAVFILAALKIRRFLTSVSSQRRLFRTTGVIMALAAVGMVAKSL
>NZ_CP041764.1|WP_160028794.1|1658512_1659652_-|ABC-transporter-permease
MKSYWQTFSRVLIGMLERPMWLMLILSLCVMSLVYANRSVWDLPVGVIDQDHSSASRELIRQLDATSKIAIKTYDSLDQAQRDLGWRELFAVIIMPVDLEKKILHGENIVVPVYGDATNRLANGQIQQDVVTAYQQLLNQYNTSLLLRSGFSERQAQIILTPIQGQTLDVFNPGISFAAIVFPGLLVMLLQHSLLIASVRVSIALKSAPSGKPSIPVYLGGLSALLPIWLFLSIVLFVLWPWVLGYRQTANIAEVLLLTFPFLLAVLGLGKLVTECLRSVEMIYLTLAFITTPIFYLSGTIWPLQAMPGWVRAISYCIPSTWATKAIAGVNQMGMSLNEVGNDVLMLLLLGAAYTVIGIGVGLAHNSVALRGLFRKRRM
>NZ_CP041764.1|WP_160028795.1|1659648_1660803_-|ABC-transporter-permease
MAMERVRAGWRCFSHAFSRECRVAFRSPVIHWLGWLFPLILFGLISSNFSEGTLLNLPVSVVDNDHSPLSKSLVRKLDAGSHAHVEAHDGGLSESLRRLRSAQDYALLYVPPDLEANALAGKQPSIVLYYNALFYGAGLYSTQDFSGLITETNGSYRSIIAASMGKTLPQLADVTLNYGSLFNASGSYIYYQQFAATIHLLQLFVVTCMIYVMARSKSLLSARPFSLALLGKLAPYTISFTTLLMIEIAALVGIFDARVSGNPLFMLLIGFFYVAAAQSIGLLLFTFTGSAITAYSLIGILVSIAMTYSGMAVPELSMPLPARIISNIEPLTHALYAMFDVFLRQVPARAIFGVCALLLVYPLVTAFLVRNRLPKRLAKDEGAL
>NZ_CP041764.1|WP_160028796.1|1660784_1661756_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MNKKTLFTLLLVVIAIAMAVLFRSHNQDLLLQGEVDAPEVIVASKAKGRVVERLIERGDDVKAGQVMITLDSPELLAQLRSAQATRDEAKAQLDQSLHGTREENIRSLRASLAQAQAELRNAQHDYDRNRSVAAKGYISKSDLDSSRRSRDTAYQQVQDAKAKLDEGINGDRIELRQQYAAALRAAEENLLEVQAQADDLQVKAPVDGEVGPIPAEVGELLNASSPLVTLIRLPDAYFVFNLREDILANIRKGDKVKLRVPALKDKVIDAEVRYIAPLGDYATKRATRATGDFDLKTFEVRLYPAQPIEGLRPGMSSLWQWKE
>NZ_CP041764.1|WP_160028797.1|1661966_1662980_+|luciferase-like-monooxygenase
MTQNASVPLSVLDLSPIPQGAKARDAFHCSLDLAQHAEKWGFQRYWLAEHHNMTGIGSAATSVLLGYLAAGTDTIRLGSGGVMLPNHAPLVIAEQFGTLESLYPGRIDLGLGRAPGTDQRTMMALRRHLSGEVDNFPRDVQELQHYFAEVQPGQPVQAVPGQGLHVPIWLLGSSLYSAQLAAKLGLPFAFASHFAPDMLFQALRLYRENYQPSERWPQPHAMVCVNVIAADSERDARFLFSSMQQQFINLRRGEPGPLPPPVDNIHALWSAGEQYGVEQALRMSIVGDENNVREGLQALLRETEADEIMVNGQIFDHRARLRSFEIVAQVKDALTRG
>NZ_CP041764.1|WP_160028799.1|1663022_1664462_-|MFS-transporter
MSTPSSAAVLGRAGLIILLAGQLLPMIDFSIVNVGLDAMAQSLHATPTQLELIVAVYGVAFAVCLAMGGRMGDNLGRRRLFLWGVRLFALASLMCGLANSVWLLLLARTLQGVGAAMIVPQIMATIHVCLRGREHARAMALYGGIGGLAFIIGQVLGGLLISLDIAGYGWRSVFLINIPLCVLVLVCAHRWVPDTRAQRRVNIDWPGTLLLALTIVCLLFPLALGPVWHWPWPCLALLALSGPLLLQLWRVERRQERRNNFPLLPPALLRLASVRFGLTIAILFFSCWSGFMFVMALTLQAGAKLNAFQSGNAFIALGVAYFISSLLSSTVIERFGKVRTLLFGCLIQIGGLLALMLTVLLVWPQPGIVNLIPATLLIGAGQALIVSGFFRIGLADVPVEHAGSGSALLATVQQTSLGLGPILLGTVLVQVLHASPGDYLHALLAALVLELLLMLALLLRTLLVLRADRRLAGGQPSRT
>NZ_CP041764.1|WP_105229537.1|1664583_1665450_+|helix-turn-helix-domain-containing-protein
MSEITSPTDAGQADNRKQLGAFLRARRESLDPNRLGLPRMRQRRTPGLRREEVAQLADVGITWYTWLEQGRAIQASTKTLSAIAHALQCNEAETHHLFRLAGQSLPASAQHGGCEKLSPYGQRLLDQLDPLPAIISNARFDILGFNRAYCLLMGVDLATLPPEDRNCIYLAFTHEQWRASQLDWDDIMPKMVALFRAQMAEHLGDPVWERQLARYLSVSEDFRALWERHEVRSIDNNVKRFLHPQVGEMSLRQNNWWSAPRNGDRMLVYMPADEQSERRLQQLTGGAG
>NZ_CP041764.1|WP_105229536.1|1665472_1665712_-|sulfurtransferase-like-selenium-metabolism-protein-YedF
MTQQTIVPDYRLDMLGEPCPYPAVATLEAMPQLKAGEILEVISDCPQSINNIPLDARNHGYKVLDIQQDGPTIRYLIQR
>NZ_CP041764.1|WP_160028801.1|1665711_1666923_-|selenium-metabolism-membrane-protein-YedE/FdhT
MNWQQFKTDYLVRFWAPLPAVIAAGLLATYYFGLTGTFWAVTGEFTRWGGHVLQWLGLHPEQWAYFKVIGLEGTPLTRIDGRMIIGMFAGCIAAALWANNIKLRRPQHRIRIVQALLGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWLFALATAAGSYFGAKFTLLPLFRVPIKLQKVQAAAPLTQLPQQARRRFRLGMLVFLLMSAWSLWTLFDAPKLGIAMLFGIAFGLLIERAQICFTSAFRDLWITGRTHMARAIILGMAVSAIGIFSYVQLGVAPKIMWAGPNALIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNIIGATLLAYYWDTLAPSLATDYDKINLLEVFGPTGGLLVTYLLLALALVAMLWWEKRFFRAKARAERVDARSM
>NZ_CP041764.1|WP_160028803.1|1667053_1668910_-|DEAD/DEAH-family-ATP-dependent-RNA-helicase
MTTELETSFADLGLSAPIISALNDLGYVKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNIDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDMYRALLAKLQPEEELEMETLAAALLKMAQGERPLILPPDPVFKPRKPREFNDRDDRRGDRRDGDRPRRERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKGMPGEILNHFTRTRILNKPMNMQLLGDAQPHDRRERRDGGNRRPFNGERREGAPRRSFGERREGGNAAGNGERRGGSANRERAPRRRFGDA
>NZ_CP041764.1|WP_105229533.1|1668899_1668980_-|protein-YrbN
MKMTENFRDELCRLAAIINEARVHDY

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Crispr_ID: NZ_CP041764_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041764_2

2935496-2935632

Orphan

Consensus_repeat	Method
GGAGCGTGATTTGAAGGCTTTGGTGCTGGCAGTGCCAGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041764_2

>merge|NZ_CP041764|2|2935496-2935632|CRISPRCasFinder
GGAGCGTGATTTGAAGGCTTTGGTGCTGGCAGTGCCAGCAAGGCTAAAAACTAAACAGTCATGGCCCGAGCCAGGAGCGGAAAGTGAATTTCACATTGGAGCGTGATTTGAAGGTTTTGGTGCTGGCAGTGCCAGCA

>NZ_CP041764|2|2|2935496-2935632|CRISPRCasFinder
GGAGCGTGATTTGAAGGCTTTGGTGCTGGCAGTGCCAGCA	AGGCTAAAAACTAAACAGTCATGGCCCGAGCCAGGAGCGGAAAGTGAATTTCACATT
GGAGCGTGATTTGAAGGTTTTGGTGCTGGCAGTGCCAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041764.1\|WP_160029918.1\|2930052_2931777_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213858
NZ_CP041764.1\|WP_160029919.1\|2931773_2932025_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041764.1\|WP_160029929.1\|2942951_2943974_+\|DNA-helicase-UvrD	unknown	unknown	gnl\|CDD\|350690
NZ_CP041764.1\|WP_160029924.1\|2934207_2935485_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP041764.1\|WP_160029926.1\|2936671_2937247_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371739
NZ_CP041764.1\|WP_111736420.1\|2939979_2940456_+\|DUF3577-domain-containing-protein	unknown	unknown	gnl\|CDD\|371899
NZ_CP041764.1\|WP_160029915.1\|2926893_2927196_-\|integrase	unknown	unknown	unknown
NZ_CP041764.1\|WP_160029920.1\|2932025_2932751_+\|DUF2786-domain-containing-protein	unknown	unknown	gnl\|CDD\|378525
NZ_CP041764.1\|WP_160029921.1\|2932747_2932972_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041764.1\|WP_160031413.1\|2941407_2942967_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226121
NZ_CP041764.1\|WP_160029922.1\|2933180_2933810_+\|DUF2857-family-protein	unknown	unknown	gnl\|CDD\|378591
NZ_CP041764.1\|WP_160029916.1\|2927459_2928362_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224113
NZ_CP041764.1\|WP_160029925.1\|2935961_2936675_+\|TIGR03761-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|378089
NZ_CP041764.1\|WP_160029931.1\|2944871_2945627_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184281
NZ_CP041764.1\|WP_160029923.1\|2933806_2934070_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041764.1\|WP_160029917.1\|2928358_2928718_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041764.1\|WP_160029932.1\|2945637_2946348_+\|TIGR03759-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274770
NZ_CP041764.1\|WP_160029930.1\|2944239_2944875_+\|pilus-assembly-protein-PilL	unknown	unknown	gnl\|CDD\|163460
NZ_CP041764.1\|WP_160029927.1\|2937260_2939300_+\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|236078
NZ_CP041764.1\|WP_160029928.1\|2940518_2941022_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236362

Protein	Function_ID	Function_description	E-value
NZ_CP041764.1\|WP_160029918.1\|2930052_2931777_+\|hypothetical-protein	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	6.89594e-146
NZ_CP041764.1\|WP_160029932.1\|2945637_2946348_+\|TIGR03759-family-integrating-conjugative-element-protein	gnl\|CDD\|274770	TIGR03759, conj_TIGR03759, integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown. [Mobile and extrachromosomal element functions, Plasmid functions].	3.30985e-95
NZ_CP041764.1\|WP_160029929.1\|2942951_2943974_+\|DNA-helicase-UvrD	gnl\|CDD\|350690	cd17932, DEXQc_UvrD, DEXQD-box helicase domain of UvrD. UvrD is a highly conserved helicase involved in mismatch repair, nucleotide excision repair, and recombinational repair. It plays a critical role in maintaining genomic stability and facilitating DNA lesion repair in many prokaryotic species including Helicobacter pylori and Escherichia coli. UvrD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	0.000134102
NZ_CP041764.1\|WP_160029924.1\|2934207_2935485_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	0.000599552
NZ_CP041764.1\|WP_160029926.1\|2936671_2937247_+\|hypothetical-protein	gnl\|CDD\|371739	pfam11810, DUF3332, Domain of unknown function (DUF3332). This family of proteins are functionally uncharacterized. This family is only found in bacteria.	0.00981384
NZ_CP041764.1\|WP_111736420.1\|2939979_2940456_+\|DUF3577-domain-containing-protein	gnl\|CDD\|371899	pfam12101, DUF3577, Protein of unknown function (DUF3577). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.	4.86325e-77
NZ_CP041764.1\|WP_160029920.1\|2932025_2932751_+\|DUF2786-domain-containing-protein	gnl\|CDD\|378525	pfam10979, DUF2786, Protein of unknown function (DUF2786). This family of proteins has no known function.	2.15072e-09
NZ_CP041764.1\|WP_160031413.1\|2941407_2942967_+\|AAA-family-ATPase	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	1.69541e-19
NZ_CP041764.1\|WP_160029922.1\|2933180_2933810_+\|DUF2857-family-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	8.85007e-77
NZ_CP041764.1\|WP_160029916.1\|2927459_2928362_+\|AAA-family-ATPase	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	2.80602e-26
NZ_CP041764.1\|WP_160029925.1\|2935961_2936675_+\|TIGR03761-family-integrating-conjugative-element-protein	gnl\|CDD\|378089	pfam08900, DUF1845, Domain of unknown function (DUF1845). This family of proteins are functionally uncharacterized.	8.29064e-98
NZ_CP041764.1\|WP_160029931.1\|2944871_2945627_+\|hypothetical-protein	gnl\|CDD\|184281	PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional.	0.00133949
NZ_CP041764.1\|WP_160029930.1\|2944239_2944875_+\|pilus-assembly-protein-PilL	gnl\|CDD\|163460	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family. This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions].	2.14301e-42
NZ_CP041764.1\|WP_160029927.1\|2937260_2939300_+\|DNA-topoisomerase-III	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	0
NZ_CP041764.1\|WP_160029928.1\|2940518_2941022_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	8.23545e-94

>NZ_CP041764.1|WP_160029924.1|2934207_2935485_+|helix-turn-helix-domain-containing-protein
MSISKRPDDSLITYTIEQMNARLAERICDENQAGSADLTNLRSGLLFTGNVHDAVPRRLMLDTRLSPLDKVAWMMIRLYAQQNQQNQGAMFPTYDELQLQLASPFKGKASRETVSRVLLMLRLTGWLSLCRRVRDSKGQIRGNIYSQHDEPLSACDAESLDPTWLDTVAAACQHKNRAVSQTAWSVLSDIRNDPTMRHYHSQLNVMAQRLGAPQTPQEMAAQMTLREENAGSSVTEPSEKYPGSETELSQFKPSSVSELGETRGKKIQSSDSELSLKSTGYSKSAKPNCNVRSFTQSVNKKTYVPRLPEALQQRIPEADQQQIHAQLQALPEDVARQVLENLSAALARGEVSNPTGWLFSMMKRARNGALFATTTASKPVKTEPVRPQRPAETSRKAPGQVATREHVSALVAKLRQGMARARNGK
>NZ_CP041764.1|WP_160029923.1|2933806_2934070_+|hypothetical-protein
MKPLVLMPGLYAPRSAPPACQKKAREQVRRFRQGERNYKALHVKGKHRSSRAWMKINISDSWRLLSRNSGVDWELLTHERYNNELWK
>NZ_CP041764.1|WP_160029922.1|2933180_2933810_+|DUF2857-family-protein
MSNSLSQATNSLLTQLVMELKSGYIRRCESLGLTPEEMQMLNGLTVDDLYYLLNSSVSVLTFQIHHENFALMLQQARREQQRMQRIDRALALGGSIEMMQHFFGLSSVEVSARRRMTGIQIRQGRCSTLSDEDNASLWRQWQKADIDDPSSADGLDVMMLAAEQMDVSLTAVWHAVRSFDGAQTRTVRKAIQAVRNKAGVGEELVRRSA
>NZ_CP041764.1|WP_160029921.1|2932747_2932972_+|hypothetical-protein
MNKSPLTNGHIEIFSTFMTVVLVLYAGGAIVLFYNQLRLKLRTREKGWQVSLLPYLLLFLPVVAAIFVVLGRSS
>NZ_CP041764.1|WP_160029920.1|2932025_2932751_+|DUF2786-domain-containing-protein
MSHLQRQERLVKLVRKLLELARSNSNAHEAGQALSRAQKLMAKYGITELEANISSIQQAPTQGAPSQSWDKIPEWMSLLTWTVANAFGCRHYFSSFESRTGLKRRNVTFYGFSERPAVAAYAFDVLSRQLKDATAAYLKTQNKRLKMATRRARAEQFRAGWVEGVRRIVDVFSVSEHEQELMSAWLEQQGMSTLKTRSVKQCRGDAIARSQGYLAGQNARLHHGVDGCGPVGIGYSAGEDK
>NZ_CP041764.1|WP_160029919.1|2931773_2932025_+|hypothetical-protein
MTVTIERLQAFLAAPSAGQDVHEMASELLAVRAITACYTKEGLSVLLETCNVLINRKNTSGYSDNLREIARVAHGLLANWENN
>NZ_CP041764.1|WP_160029918.1|2930052_2931777_+|hypothetical-protein
MGRINTKNIDLGSALLLQGKTAVGTDSNAPAEGALPATEMPMVLTLDDVSPFPDNPRTSRNPRYEEIKASIRARGLDTVPKITADPDRPELGFFFSDGGNTRHQILSELWQETGDERFYRISCMFKPWPGRLSCVIGHLAENEVRGELSFIEKAFGIKKARAIFEEELGRAVSLRELSALLGEAGYPVHNSNISRMEDTVKYLYPFMPLLLESGVGAPQIRGLLALRTGSEKVWKLFSNDIKSTTSFAEVFGSVCSQFNDPDAYSLEMLRDELIGALVKALPHPSLNYDRWLLELDPKEQNRRQQLGEEHLQSVPNFAVQPRVGSPVDGSGEIDSSAAIPLSSSDAPVPGTSALTLSSALDEQEGEEDSSDAEPISSGSPRIETQHDLYGAPPVLSGDVDEQPSPGMSGTEAAGVGQPAQPCPVAPEVTPNAEGSEVAFAEEGLEPVVSVWAIPALQDDIEHLQGMAYRLAFELAEQAGCETELKADKATLIAAGYCLATQQSSPFTALLLSLTGPAPANEACSLSEALIGAADGAGFPLLDDVHAVKFLRLVRVLRRLRELQRDVDTDTGEDA
>NZ_CP041764.1|WP_160029917.1|2928358_2928718_+|hypothetical-protein
MNRNFIWRAVAHSALINRDETHVFVDAPDYETAKQHLYERLSDEWGIPRGFIDFYNLWNEEQLREMSAGQKIPSGLQLLETGGGNGEVCYDHSPLILVASAMLREILEYALRQPEVRHG
>NZ_CP041764.1|WP_160029916.1|2927459_2928362_+|AAA-family-ATPase
MENVVTKTQHKARVVPVISTKGGEGKSTQSANLAGFLADAGKKVLLIDGDHSQPTASSIFSLEYEAPNGLYELLMKTVDLARPDQIISRSVINNLDIIVSNDPHDRLSSAMLHAPDGRMRLRNVLQHPLFQDYDVIIIDSKGAASIMLELILLASSSFAVGVIKPILPDTREFLRGTLGLMEGLLPLAVYGIAMPQVRILTNCMEYTNLDWKTLESLQGIIENGQYLRADAFDVSLLNTIIPKLEIYKLGHASGQPVHRLETTTTRTSTPAAADTMYDLACELFPDWTADFDLLRKEANQ
>NZ_CP041764.1|WP_160029915.1|2926893_2927196_-|integrase
MIQPTKNRFGVYHIRKAVPKHLVAILGKREIKFTLDTKDVKEARERAPAKIIQIDLMLRLAEKQLAAEQTLTDADIELIAGVWASKTMQQDDLIGLTPSL
>NZ_CP041764.1|WP_160029925.1|2935961_2936675_+|TIGR03761-family-integrating-conjugative-element-protein
MADTTESAQRKPAQSRAGALKSTLTVQLHTQYAILLWEGRQRDKEANKPQIVGMPQVIARAGKINADSNDDNPYADHAMLLLEEAIERGTGRLQSAVADLEKTLSSLPGQVSMSEVASVSPLNIGVFSRTPLGYRCVWLLVGFDQLAMKAFQAWHYGLISRQKRDDLLSQGGHWVRQVYGVVQQYRSVAATRDDIRLQTPAGIDAVKRLGQPDADIMSGAKRSAFSPALRPAKGDPA
>NZ_CP041764.1|WP_160029926.1|2936671_2937247_+|hypothetical-protein
MSNDSLKSLRSTVAVCLFGSFLLSGCSMSDVTEWNQKISDAAHSIASGSGTSSDPGGMPWMTKAGATGPRKDVQHTYKLPVDVDTAAARLKSHYQFITTDELESLRQRDQYGDWSAGSIDEARPEWAAEKGSYYKMGQEWKDNDRLMLEVEKSGAGSRLKVTYSSPDSTHLTDAYLRRLMTQVQQVAKGQR
>NZ_CP041764.1|WP_160029927.1|2937260_2939300_+|DNA-topoisomerase-III
MQLYLCEKPSQGKDIGAVLGANQRKQGYLTGAGVIVTWAIGHLLEQAQPETYGEQYGSPWRESVLPIVPTQWKMVVKKDTADQFAVIRGLLKQVDSVVIATDADREGEVIARELLEYCKFTGPVERLWLSALDETSIRQALANKLPGSKTAPLYEAGLARARADWMTGMNLTRLYTLKAREQGYGEVLSIGRVQTPALALVVNRDREIANFVSKPYWQVQATLQKDGISFPASWVPAANYCDEEKRCIHQNVAQAVVQLCQQTGQAVVLDVGTERKKESAPLAFDLGSLQQACSRKWGMGANQVLSIAQSLYETHKATTYPRTDCGYLPTSMQAEIPDVLNAITRTDPIQSAVIASLDTGFVSRIWNDKKITAHHGIIPTKQAFDLSKLSADELKVYQLIHQHYLAQFLPLHELDVTEATFNVGGQLFRTRGKVEVIAGWKALFQREERDDKEKQDDSAEARLPALEKGQPCTVASAELKTLQTKPPSHFTDGTLIAAMKNAAAFVSDPQLKKVLKENAGLGTEATRAGILETLFKRGYLEKKGKFLLSTPIAGELIDALPTALTNPGMTALWEQALDEIAQGKMTLYTFMDRQAQWATHLVDKGKTQAVKFTAPPSPPCPLCSGTMRRRTGKKGGGAFWGCSNYPTCQGIINIDAKSGGKGKRYKGKSAAKNKTTRSE
>NZ_CP041764.1|WP_111736420.1|2939979_2940456_+|DUF3577-domain-containing-protein
MSTPAQTQQNATKNTEYFNLTINGMGYLSNVRQVNGPNGTFISCVVNALSGPTDNASYTRFDCTVAGKEASSLINRCQKACDEDKKVLIGFVLSNPKTDIFTLNSGEHAGEQRVSLKARLIRIDWIKIGQEKVYQAEKSYSQPPQQGSAQPSYAENSF
>NZ_CP041764.1|WP_160029928.1|2940518_2941022_+|single-stranded-DNA-binding-protein
MASRGVNKVILVGYLGQDPEIRYMPSGGAVATLSLATSESWRDKQSGEQKEKTEWHRVVLFGKLAEIAGEYLRKGSQVYIEGQLRTRRWTDSDGVDRYTTEVAVNVGGSMQMLGGRSPDNASGQRSQNSWGKPQQPTHSGTPPKQPQTQAQSGGNEPPMDFDTDIPF
>NZ_CP041764.1|WP_160031413.1|2941407_2942967_+|AAA-family-ATPase
MPVITRLMLQNFKKFSALDLSFCADRNVLIGDNESGKSSILLALDLVLSDSRYRVETLGVETLLSQSAVDGFLAGERRIEQLPVLTVDVFLSAGTNPDLNGRQNLADIDADGLRMRIAPMIDEYGQDISQVLQHNPSIFPFEYYSVKFTTFSGGHYAGFRRYLRHLLLDSARIDSEHAAQEYTRAVYNVNVPVSERYRLENSYRQQKNHFCEQQLSVVNDALELYRFGIRAGTKSGLEANLDITEEGISIRNRGKGRQCFIKTEFALRRHQQQGELDVLLLEEPENHMSHLSMKKLVSQLATDRQTQLFIATHSSHISSRLDLRKAILLGEAGKVLLNDLSADTAAFFIKAPDNNVLEFSLSKRVLLVEGDAEFILIEYFYHLLHARKPEDDDVHIIAIGGTSFRRYLELARLLGTRVAALRDNDGKYQQNCAERYADLLSENIQVFADPDDTRSTFEISLYQDNRDLCEELFGQERRRLTVQEYMLANKAEAAFRLLQHDKIMNVPGYIQEALTWIRG
>NZ_CP041764.1|WP_160029929.1|2942951_2943974_+|DNA-helicase-UvrD
MDKRVIFAVAGSGKTTLLKNSLRETSRTLILTYTVNNEEHLRSSIISRFGFIPEGIRIMTWFEFLYAFCCRPFLQDRLTTRGLSFVQPPLRIPRTNRQHYQDRGGRLYHRRLAHLLTERGLLSAICERLVRYYDELFVDEVQDFAGHDFNFLLGLSRADLSVLFVGDFYQHTFDTSRDGNINATLHKSIDQYEGRFRASGMTVDSETLSRTWRCSPTVCEFITGQLNIHITAHGTHSTSIEMVNDAERVAALHADDSVIKLFYREHYRYGCYSMNWGASKGLDHLQDVCIVFGADHWRKLGQQTLKDLPPSSRNRLYVACSRARGNIYFVEEANLRQFRR
>NZ_CP041764.1|WP_160029930.1|2944239_2944875_+|pilus-assembly-protein-PilL
MKKTLVVSALAAVILTGCTTQQPLQQRDASLVTPPVTVSRNVQPVTPDAYGQAPEVVRYDRYLLVSTDPAAVQRDPLSQIIDIRIPASVKPTVADALSYSLRQSGYTLCATGPANGVLYRQALPAVQYQLGPMRLRTALQVLAGPAWQLEVDDVQRVVCHSLRDGYQLPASQLPPSPTPRVYHAAPTTAPAGTMVPPAIKPVSSTGGWLKK
>NZ_CP041764.1|WP_160029931.1|2944871_2945627_+|hypothetical-protein
MTEHNEEMIPMTPAKKGLLRSKTFWLVTGGVVVVLIIGMVGVGAVKHVDQRIAQLETAQKALAPQDDMTSMADVVQAHAKQLKALTVRLNTLNDEMTGLRTTNSLPEKLEQQLQAQQVELNALKDSLEALKKSAATAPAEKTAPAGKPSVSVLAAPSATAKITPKHKPTPIKSSPRKAVRRVARKAPFVLTGVEQRGTAAFAAVAPQGFSDLSQVRLIGEGESVAGWTLVSAGHGQATFRVNGRLQTVSAQ
>NZ_CP041764.1|WP_160029932.1|2945637_2946348_+|TIGR03759-family-integrating-conjugative-element-protein
MKLTYSLFALVLLSPLSQAAQQTAIENSQSTLSQLQQSQANKMAEQGKQWGLSGQEYQRYEQLMEGPRGTQSPGLDPLTALGIEAKSDAERKKYAEQWVKQEFVRTEKELKFQREVDAAWQRLGVLPVNMGNAAGIAHDSGGRLALFVKGKDCGQCDARLAAVLADNRPVDIYLVDSKGDDDVLRSWAKAHHIPADKVRARQITLNHDGGRWMKFGNGLMPVVLQQGKDGWTIAAF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041764_1	1.2\|1658256\|32\|NZ_CP041764\|CRISPRCasFinder	1658256-1658287	32	NZ_CP053380	Serratia marcescens strain FY plasmid p2, complete sequence	46831-46862	4	0.875
NZ_CP041764_1	1.4\|1658265\|32\|NZ_CP041764\|PILER-CR	1658265-1658296	32	NZ_CP053380	Serratia marcescens strain FY plasmid p2, complete sequence	46831-46862	4	0.875
NZ_CP041764_1	1.2\|1658256\|32\|NZ_CP041764\|CRISPRCasFinder	1658256-1658287	32	NZ_CP033894	Serratia liquefaciens strain FG3 plasmid p1-159, complete sequence	22256-22287	5	0.844
NZ_CP041764_1	1.2\|1658256\|32\|NZ_CP041764\|CRISPRCasFinder	1658256-1658287	32	NC_015972	Serratia marcescens strain B-6493 plasmid pSM22, complete sequence	34840-34871	5	0.844
NZ_CP041764_1	1.2\|1658256\|32\|NZ_CP041764\|CRISPRCasFinder	1658256-1658287	32	NZ_CP003425	Serratia sp. SCBI plasmid SCBI_Pl, complete sequence	28908-28939	5	0.844
NZ_CP041764_1	1.2\|1658256\|32\|NZ_CP041764\|CRISPRCasFinder	1658256-1658287	32	CP041234	Serratia marcescens subsp. marcescens ATCC 13880 plasmid pATCC, complete sequence	25546-25577	5	0.844
NZ_CP041764_1	1.2\|1658256\|32\|NZ_CP041764\|CRISPRCasFinder	1658256-1658287	32	NZ_LT575491	Serratia marcescens isolate PWN146_assembly plasmid PWN146p1, complete sequence	81632-81663	5	0.844
NZ_CP041764_1	1.4\|1658265\|32\|NZ_CP041764\|PILER-CR	1658265-1658296	32	NZ_CP033894	Serratia liquefaciens strain FG3 plasmid p1-159, complete sequence	22256-22287	5	0.844
NZ_CP041764_1	1.4\|1658265\|32\|NZ_CP041764\|PILER-CR	1658265-1658296	32	NC_015972	Serratia marcescens strain B-6493 plasmid pSM22, complete sequence	34840-34871	5	0.844
NZ_CP041764_1	1.4\|1658265\|32\|NZ_CP041764\|PILER-CR	1658265-1658296	32	NZ_CP003425	Serratia sp. SCBI plasmid SCBI_Pl, complete sequence	28908-28939	5	0.844
NZ_CP041764_1	1.4\|1658265\|32\|NZ_CP041764\|PILER-CR	1658265-1658296	32	CP041234	Serratia marcescens subsp. marcescens ATCC 13880 plasmid pATCC, complete sequence	25546-25577	5	0.844
NZ_CP041764_1	1.4\|1658265\|32\|NZ_CP041764\|PILER-CR	1658265-1658296	32	NZ_LT575491	Serratia marcescens isolate PWN146_assembly plasmid PWN146p1, complete sequence	81632-81663	5	0.844
NZ_CP041764_1	1.2\|1658256\|32\|NZ_CP041764\|CRISPRCasFinder	1658256-1658287	32	NZ_CP022429	Pantoea ananatis strain YJ76 plasmid p_unamed1	256637-256668	8	0.75
NZ_CP041764_1	1.4\|1658265\|32\|NZ_CP041764\|PILER-CR	1658265-1658296	32	NZ_CP022429	Pantoea ananatis strain YJ76 plasmid p_unamed1	256637-256668	8	0.75

1. spacer 1.2|1658256|32|NZ_CP041764|CRISPRCasFinder matches to NZ_CP053380 (Serratia marcescens strain FY plasmid p2, complete sequence) position: , mismatch: 4, identity: 0.875

atcttcaccatcagtgtttccggctgctgtga	CRISPR spacer
atcttcaccatcagggtctccggctgctgcgc	Protospacer
************** **.***********.*

2. spacer 1.4|1658265|32|NZ_CP041764|PILER-CR matches to NZ_CP053380 (Serratia marcescens strain FY plasmid p2, complete sequence) position: , mismatch: 4, identity: 0.875

atcttcaccatcagtgtttccggctgctgtga	CRISPR spacer
atcttcaccatcagggtctccggctgctgcgc	Protospacer
************** **.***********.*

3. spacer 1.2|1658256|32|NZ_CP041764|CRISPRCasFinder matches to NZ_CP033894 (Serratia liquefaciens strain FG3 plasmid p1-159, complete sequence) position: , mismatch: 5, identity: 0.844

atcttcaccatcagtgtttccggctgctgtga	CRISPR spacer
accttcaccatcagggtctccggctgctgcgc	Protospacer
*.************ **.***********.*

4. spacer 1.2|1658256|32|NZ_CP041764|CRISPRCasFinder matches to NC_015972 (Serratia marcescens strain B-6493 plasmid pSM22, complete sequence) position: , mismatch: 5, identity: 0.844

atcttcaccatcagtgtttccggctgctgtga	CRISPR spacer
accttcaccatcagggtctccggctgctgcgc	Protospacer
*.************ **.***********.*

5. spacer 1.2|1658256|32|NZ_CP041764|CRISPRCasFinder matches to NZ_CP003425 (Serratia sp. SCBI plasmid SCBI_Pl, complete sequence) position: , mismatch: 5, identity: 0.844

atcttcaccatcagtgtttccggctgctgtga	CRISPR spacer
accttcaccatcagggtctccggctgctgcgc	Protospacer
*.************ **.***********.*

6. spacer 1.2|1658256|32|NZ_CP041764|CRISPRCasFinder matches to CP041234 (Serratia marcescens subsp. marcescens ATCC 13880 plasmid pATCC, complete sequence) position: , mismatch: 5, identity: 0.844

atcttcaccatcagtgtttccggctgctgtga	CRISPR spacer
accttcaccatcagggtctccggctgctgcgc	Protospacer
*.************ **.***********.*

7. spacer 1.2|1658256|32|NZ_CP041764|CRISPRCasFinder matches to NZ_LT575491 (Serratia marcescens isolate PWN146_assembly plasmid PWN146p1, complete sequence) position: , mismatch: 5, identity: 0.844

atcttcaccatcagtgtttccggctgctgtga	CRISPR spacer
accttcaccatcagggtctccggctgctgcgc	Protospacer
*.************ **.***********.*

8. spacer 1.4|1658265|32|NZ_CP041764|PILER-CR matches to NZ_CP033894 (Serratia liquefaciens strain FG3 plasmid p1-159, complete sequence) position: , mismatch: 5, identity: 0.844

atcttcaccatcagtgtttccggctgctgtga	CRISPR spacer
accttcaccatcagggtctccggctgctgcgc	Protospacer
*.************ **.***********.*

9. spacer 1.4|1658265|32|NZ_CP041764|PILER-CR matches to NC_015972 (Serratia marcescens strain B-6493 plasmid pSM22, complete sequence) position: , mismatch: 5, identity: 0.844

atcttcaccatcagtgtttccggctgctgtga	CRISPR spacer
accttcaccatcagggtctccggctgctgcgc	Protospacer
*.************ **.***********.*

10. spacer 1.4|1658265|32|NZ_CP041764|PILER-CR matches to NZ_CP003425 (Serratia sp. SCBI plasmid SCBI_Pl, complete sequence) position: , mismatch: 5, identity: 0.844

atcttcaccatcagtgtttccggctgctgtga	CRISPR spacer
accttcaccatcagggtctccggctgctgcgc	Protospacer
*.************ **.***********.*

11. spacer 1.4|1658265|32|NZ_CP041764|PILER-CR matches to CP041234 (Serratia marcescens subsp. marcescens ATCC 13880 plasmid pATCC, complete sequence) position: , mismatch: 5, identity: 0.844

atcttcaccatcagtgtttccggctgctgtga	CRISPR spacer
accttcaccatcagggtctccggctgctgcgc	Protospacer
*.************ **.***********.*

12. spacer 1.4|1658265|32|NZ_CP041764|PILER-CR matches to NZ_LT575491 (Serratia marcescens isolate PWN146_assembly plasmid PWN146p1, complete sequence) position: , mismatch: 5, identity: 0.844

atcttcaccatcagtgtttccggctgctgtga	CRISPR spacer
accttcaccatcagggtctccggctgctgcgc	Protospacer
*.************ **.***********.*

13. spacer 1.2|1658256|32|NZ_CP041764|CRISPRCasFinder matches to NZ_CP022429 (Pantoea ananatis strain YJ76 plasmid p_unamed1) position: , mismatch: 8, identity: 0.75

atcttcaccatcagtgtttccggctgctgtga	CRISPR spacer
cccttcaccatcagtttttcccgctgtggtac	Protospacer
 .************* ***** ****. **.

14. spacer 1.4|1658265|32|NZ_CP041764|PILER-CR matches to NZ_CP022429 (Pantoea ananatis strain YJ76 plasmid p_unamed1) position: , mismatch: 8, identity: 0.75

atcttcaccatcagtgtttccggctgctgtga	CRISPR spacer
cccttcaccatcagtttttcccgctgtggtac	Protospacer
 .************* ***** ****. **.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

46506 : 93069

Klebsiella_phage(15.38%)

portal,holin,tRNA,capsid,integrase,head,terminase,protease,tail

attL 79949:79963|attR 91775:91789

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160026909.1\|46506_48744_-	hypothetical protein	Q687E6	Enterobacteria_phage	4.9e-13	44.2
WP_160026911.1\|50038_51001_-	hypothetical protein	NA	NA	NA	NA
WP_160031308.1\|51000_54204_-	DUF1983 domain-containing protein	F1C571	Cronobacter_phage	0.0e+00	68.3
WP_160026913.1\|54258_54867_-\|tail	tail assembly protein	A0A1W6JNY8	Morganella_phage	1.9e-60	58.0
WP_160026915.1\|54925_55225_-	hypothetical protein	NA	NA	NA	NA
WP_160026917.1\|55280_55994_-	peptidase P60	F1C573	Cronobacter_phage	7.3e-96	69.4
WP_160031309.1\|55995_56751_-\|tail	phage minor tail protein L	F1C574	Cronobacter_phage	5.7e-99	67.3
WP_160026919.1\|56760_57099_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	2.4e-33	60.0
WP_160026921.1\|57095_60437_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	57.4
WP_160026923.1\|60429_60651_-	hypothetical protein	NA	NA	NA	NA
WP_160026925.1\|60668_61034_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.4e-18	41.8
WP_160026927.1\|61043_61307_-\|tail	phage tail protein	Q7Y402	Yersinia_phage	2.5e-17	57.0
WP_160026929.1\|61303_61759_-\|tail	phage tail protein	Q7Y403	Yersinia_phage	7.8e-59	75.3
WP_160026931.1\|61796_62189_-	hypothetical protein	Q6UAX1	Klebsiella_phage	1.2e-44	70.7
WP_160026933.1\|62185_62575_-	hypothetical protein	Q6UAX2	Klebsiella_phage	3.7e-33	54.3
WP_160026935.1\|62561_62900_-\|head	phage head closure protein	Q7Y406	Yersinia_phage	5.8e-19	48.2
WP_160026937.1\|62896_63223_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	3.1e-33	56.5
WP_160026939.1\|63552_64773_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	4.3e-181	81.5
WP_160026941.1\|64788_65640_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	9.9e-124	79.1
WP_160026943.1\|65651_66956_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	4.2e-206	80.9
WP_160026945.1\|66955_68698_-\|terminase	phage terminase small subunit P27 family	A0A0U2C138	Paracoccus_phage	6.3e-141	46.3
WP_160026947.1\|68651_69116_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	4.8e-48	61.4
WP_160026949.1\|69240_69570_-	HNH endonuclease	A0A2I6PIG1	Escherichia_phage	6.7e-36	62.2
WP_160026951.1\|70726_71269_-	hypothetical protein	A0A286N2Q6	Klebsiella_phage	1.1e-72	73.0
WP_160026953.1\|71246_71552_-\|holin	phage holin family protein	A4PE35	Ralstonia_virus	3.4e-10	44.6
WP_160026955.1\|71541_71919_-	hypothetical protein	A0A1S5NRL1	Burkholderia_phage	1.7e-11	43.3
WP_105230659.1\|72089_72350_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	1.2e-08	39.5
WP_160026957.1\|72415_72775_+	helix-turn-helix domain-containing protein	A0A1S5NNJ5	Burkholderia_phage	7.6e-09	39.8
WP_160026959.1\|72948_73452_-	DUF4411 family protein	NA	NA	NA	NA
WP_160026961.1\|73448_74588_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_105230656.1\|74783_75182_-	antitermination protein Q	U5P0A5	Shigella_phage	1.4e-32	60.3
WP_160026963.1\|75233_76220_-	DUF968 domain-containing protein	A0A0P0ZD76	Stx2-converting_phage	2.0e-88	48.2
WP_160026965.1\|76233_77037_-	KilA-N domain-containing protein	U5P4K5	Shigella_phage	9.8e-81	58.7
WP_160026967.1\|77143_77521_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.6e-36	59.2
WP_160026969.1\|77517_78063_-	phage N-6-adenine-methyltransferase	A0A1W6JP96	Morganella_phage	1.3e-60	65.3
WP_160026971.1\|78059_78404_-	hypothetical protein	NA	NA	NA	NA
WP_160026973.1\|79482_79668_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_160026975.1\|79862_80387_-	DNA-binding protein	Q8SBF4	Shigella_phage	4.3e-13	30.5
79949:79963	attL	NA	NA	NA	NA
WP_160026977.1\|80415_80658_-	cytoplasmic chaperone TorD	NA	NA	NA	NA
WP_160026979.1\|80795_81482_+	helix-turn-helix domain-containing protein	A0A0N7C1P9	Escherichia_phage	3.2e-40	44.5
WP_160026981.1\|81473_82355_-	NAD-dependent DNA ligase	U3PB51	Vibrio_phage	8.9e-35	33.8
WP_160026983.1\|82725_83172_-	hypothetical protein	NA	NA	NA	NA
WP_160026985.1\|83586_84117_+	HD family hydrolase	A0A291AX04	Escherichia_phage	1.2e-55	61.8
WP_160026987.1\|84116_84530_+	hypothetical protein	A0A2D1GNS5	Pseudomonas_phage	1.5e-05	60.6
WP_160026989.1\|84531_84834_+	hypothetical protein	NA	NA	NA	NA
WP_160026991.1\|84826_85090_+	hypothetical protein	NA	NA	NA	NA
WP_160026993.1\|85086_86934_+	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	2.3e-202	54.2
WP_160026995.1\|87168_87513_+	hypothetical protein	H9C172	Pectobacterium_phage	4.0e-31	61.5
WP_160026997.1\|87560_87812_+	excisionase	NA	NA	NA	NA
WP_160026999.1\|87786_88914_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	1.7e-123	59.5
WP_105233282.1\|89036_90290_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.7e-20	88.9
WP_160027001.1\|90422_91049_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_160027003.1\|91068_91404_+	hypothetical protein	NA	NA	NA	NA
WP_160027005.1\|91413_91860_+	NUDIX domain-containing protein	NA	NA	NA	NA
91775:91789	attR	NA	NA	NA	NA
WP_160027007.1\|91956_93069_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_2

190193 : 281594

Escherichia_phage(14.71%)

portal,capsid,transposase,head,integrase,terminase,tail,plate

attL 185605:185619|attR 287612:287626

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
185605:185619	attL	NA	NA	NA	NA
WP_160027119.1\|190193_190400_-\|tail	phage tail protein	NA	NA	NA	NA
WP_160027121.1\|190499_190799_+	hypothetical protein	NA	NA	NA	NA
WP_160027123.1\|190828_191227_+	hypothetical protein	NA	NA	NA	NA
WP_160027125.1\|191207_191420_-	hypothetical protein	NA	NA	NA	NA
WP_160027127.1\|191423_191630_-\|tail	phage tail protein	NA	NA	NA	NA
WP_160027129.1\|191728_191968_+	superinfection immunity protein	NA	NA	NA	NA
WP_160027131.1\|191975_193790_-	hypothetical protein	R9TRP8	Vibrio_phage	2.3e-21	31.7
WP_160027133.1\|193907_194195_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_160027135.1\|194984_195596_+	Rha family transcriptional regulator	A0A0P0ZGC2	Escherichia_phage	6.8e-26	57.0
WP_160027137.1\|196537_196777_+	hypothetical protein	NA	NA	NA	NA
WP_160027139.1\|196993_197506_-\|tail	phage tail protein	A0A2H4JBU0	uncultured_Caudovirales_phage	6.3e-09	28.5
WP_160027141.1\|197517_199005_-\|tail	phage tail protein	R9TMQ0	Vibrio_phage	1.3e-67	35.5
WP_160027143.1\|199065_199230_-	hypothetical protein	NA	NA	NA	NA
WP_160027145.1\|199226_199397_-	hypothetical protein	NA	NA	NA	NA
WP_160027147.1\|199660_200506_-	hypothetical protein	D6QWP0	uncultured_phage	3.2e-34	53.3
WP_160027149.1\|200943_201261_+	hypothetical protein	NA	NA	NA	NA
WP_160027151.1\|201420_203100_-	hypothetical protein	Q37842	Escherichia_phage	5.5e-17	70.5
WP_160027153.1\|203092_203638_-\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	5.3e-30	43.2
WP_160027155.1\|203634_204567_-\|plate	baseplate assembly protein	A0A193GYM8	Enterobacter_phage	8.4e-68	48.1
WP_160027157.1\|204563_204899_-\|plate	baseplate assembly protein	A0A088FV58	Escherichia_phage	5.8e-19	44.0
WP_160027159.1\|204923_205499_-\|plate	phage baseplate assembly protein V	Q8HAB9	Salmonella_phage	9.6e-06	33.3
WP_160027161.1\|205491_206115_-	hypothetical protein	R9TMP6	Vibrio_phage	6.1e-14	31.7
WP_160027163.1\|206111_206618_-	hypothetical protein	NA	NA	NA	NA
WP_160027165.1\|206618_207170_-	hypothetical protein	NA	NA	NA	NA
WP_160027167.1\|207166_207826_-	hypothetical protein	NA	NA	NA	NA
WP_160027169.1\|207846_208224_-	hypothetical protein	NA	NA	NA	NA
WP_160027171.1\|208220_208643_-	hypothetical protein	NA	NA	NA	NA
WP_160027173.1\|208691_209744_-\|capsid	major capsid protein E	C6ZCY2	Enterobacteria_phage	2.6e-105	58.5
WP_160027175.1\|209824_210166_-\|head	head decoration protein	NA	NA	NA	NA
WP_160027177.1\|210168_211473_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.1e-108	52.7
WP_160027179.1\|211459_212218_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	3.3e-70	52.7
WP_160027181.1\|213850_214054_-\|transposase	transposase	Q716C2	Shigella_phage	3.7e-13	64.3
WP_160027183.1\|215555_215864_-	hypothetical protein	NA	NA	NA	NA
WP_160027185.1\|216233_219854_-	hypothetical protein	NA	NA	NA	NA
WP_160027187.1\|219963_220245_+	hypothetical protein	NA	NA	NA	NA
WP_160027189.1\|221082_228615_-	invasin-like inverse autotransporter protein	NA	NA	NA	NA
WP_160027191.1\|229446_230181_-	hypothetical protein	NA	NA	NA	NA
WP_160027193.1\|230327_246374_-	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	8.3e-46	26.2
WP_160027195.1\|246373_253504_-	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	3.9e-72	30.0
WP_025303319.1\|253525_254437_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_038630276.1\|254451_255393_-	hypothetical protein	NA	NA	NA	NA
WP_160027197.1\|255506_256688_-	MFS transporter	S4TR35	Salmonella_phage	7.8e-18	26.6
WP_160027199.1\|257902_258163_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_160027201.1\|258164_259406_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A2H4JB45	uncultured_Caudovirales_phage	1.9e-91	41.6
WP_160027203.1\|259560_260439_-\|portal	phage portal protein	E4WL21	Enterobacteria_phage	2.1e-100	64.4
WP_160031318.1\|260435_260666_-	hypothetical protein	NA	NA	NA	NA
WP_160027205.1\|260673_262584_-\|terminase	phage terminase large subunit family protein	K7P6G6	Enterobacteria_phage	2.3e-245	62.6
WP_160027207.1\|262555_263062_-\|terminase	terminase	O64316	Escherichia_phage	8.7e-19	46.7
WP_160027209.1\|263875_265333_-	glycosyltransferase family 2 protein	K7PKP3	Enterobacterial_phage	2.9e-224	74.6
WP_160027211.1\|265559_268757_-	hypothetical protein	NA	NA	NA	NA
WP_160027213.1\|269246_269858_-	hypothetical protein	Q8HA89	Salmonella_phage	6.7e-82	71.0
WP_160027215.1\|269888_270278_-	hypothetical protein	Q6V7S4	Burkholderia_virus	1.4e-21	53.4
WP_160027217.1\|270319_270544_-	hypothetical protein	NA	NA	NA	NA
WP_160027219.1\|270929_271082_-	Hok/Gef family protein	NA	NA	NA	NA
WP_160027221.1\|271548_271743_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_160031319.1\|271818_272400_-	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	2.2e-66	63.6
WP_160027223.1\|272413_272788_-	hypothetical protein	NA	NA	NA	NA
WP_160027225.1\|272893_274297_-	hypothetical protein	K4NZ18	Pseudomonas_phage	1.4e-29	43.6
WP_160027227.1\|274299_275121_-	transcriptional regulator	A0A0P0ZE80	Stx2-converting_phage	8.8e-53	57.2
WP_160031320.1\|275145_275475_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	2.2e-39	89.7
WP_160027228.1\|275464_275773_+	helix-turn-helix domain-containing protein	A0A088CD40	Shigella_phage	2.0e-42	89.2
WP_160027229.1\|275831_276083_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_160027230.1\|276125_276371_-	hypothetical protein	NA	NA	NA	NA
WP_160027231.1\|276393_276837_-	hypothetical protein	NA	NA	NA	NA
WP_160027232.1\|276836_277046_-	hypothetical protein	A0A1W6JP24	Morganella_phage	4.4e-09	46.3
WP_160031321.1\|277120_277522_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	1.3e-41	65.4
WP_160027233.1\|278133_278322_+	DUF1482 family protein	NA	NA	NA	NA
WP_160027234.1\|278439_279465_+	hypothetical protein	NA	NA	NA	NA
WP_160031322.1\|279467_279683_+	hypothetical protein	A0A248XD10	Klebsiella_phage	5.3e-10	49.2
WP_160027235.1\|279679_279928_+	hypothetical protein	NA	NA	NA	NA
WP_160027236.1\|279932_280298_+	hypothetical protein	NA	NA	NA	NA
WP_160027238.1\|280353_280581_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_160027240.1\|280583_281594_+\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	6.4e-130	66.1
287612:287626	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1581833 : 1622594

Enterobacteria_phage(30.0%)

transposase,integrase,holin,tRNA

attL 1587902:1587917|attR 1618664:1618679

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160031376.1\|1581833_1582673_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.6e-80	55.8
WP_160028687.1\|1582847_1582970_-\|transposase	transposase	NA	NA	NA	NA
WP_160028689.1\|1583100_1583526_-	hypothetical protein	NA	NA	NA	NA
WP_160031377.1\|1583503_1583806_-	type IV secretion protein Rhs	NA	NA	NA	NA
WP_160028691.1\|1584795_1585398_+	uracil-DNA glycosylase	NA	NA	NA	NA
WP_160028693.1\|1585666_1588006_-	DNA primase	Q7M2A8	Enterobacteria_phage	3.1e-260	59.1
1587902:1587917	attL	NA	NA	NA	NA
WP_160028695.1\|1588016_1588352_-	hypothetical protein	NA	NA	NA	NA
WP_128144152.1\|1588348_1588612_-	hypothetical protein	NA	NA	NA	NA
WP_160028697.1\|1588608_1589151_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	1.9e-19	51.7
WP_160028699.1\|1589156_1589402_-	hypothetical protein	NA	NA	NA	NA
WP_160028701.1\|1589398_1589662_-	AlpA family phage regulatory protein	Q7M299	Enterobacteria_phage	2.1e-16	56.2
WP_160028703.1\|1590193_1590919_+	NAD-dependent aldehyde dehydrogenase	NA	NA	NA	NA
WP_160028705.1\|1590915_1591158_+	transcriptional regulator	F1BUT0	Erwinia_phage	2.3e-09	55.8
WP_160028707.1\|1591690_1592554_+	restriction endonuclease	NA	NA	NA	NA
WP_160028709.1\|1592566_1594030_-	hypothetical protein	NA	NA	NA	NA
WP_160028711.1\|1594180_1595437_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	6.2e-74	41.8
WP_160028713.1\|1596085_1596853_+	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	6.1e-48	46.2
WP_160028715.1\|1596907_1597870_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_160028717.1\|1597872_1599258_+	GntP family permease	NA	NA	NA	NA
WP_160028719.1\|1599547_1600342_+	winged helix family transcriptional regulator	NA	NA	NA	NA
WP_160028721.1\|1600338_1600857_+	hypothetical protein	NA	NA	NA	NA
WP_015670698.1\|1601359_1601638_+	BMC domain-containing protein	NA	NA	NA	NA
WP_015670697.1\|1601661_1601946_+	BMC domain-containing protein	NA	NA	NA	NA
WP_160028723.1\|1601959_1602238_+	BMC domain-containing protein	NA	NA	NA	NA
WP_160028725.1\|1602328_1603918_+	acetaldehyde dehydrogenase (acetylating)	NA	NA	NA	NA
WP_105229588.1\|1603941_1604199_+	EutN/CcmL family microcompartment protein	NA	NA	NA	NA
WP_160028727.1\|1604211_1605423_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_160028729.1\|1605425_1608809_+\|holin	choline trimethylamine-lyase	NA	NA	NA	NA
WP_160028731.1\|1608874_1609822_+\|holin	choline TMA-lyase-activating enzyme	NA	NA	NA	NA
WP_160028733.1\|1609832_1610267_+	BMC domain-containing protein	NA	NA	NA	NA
WP_160028735.1\|1610943_1611618_+	hypothetical protein	NA	NA	NA	NA
WP_160028737.1\|1611675_1612038_+	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
WP_160028739.1\|1612049_1612379_+	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
WP_015670685.1\|1612468_1613539_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_160028741.1\|1613538_1614633_-	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_160028743.1\|1614915_1616427_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	1.2e-47	38.0
WP_160028745.1\|1616590_1617040_+	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_160028747.1\|1617053_1619930_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	3.9e-140	35.5
1618664:1618679	attR	NA	NA	NA	NA
WP_160028749.1\|1620251_1620755_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_160028751.1\|1620986_1622594_+\|holin	glucose-methanol-choline oxidoreductase	A0A1V0S9J5	Catovirus	1.3e-55	30.4

DBSCAN-SWA_4

2995008 : 3055156

Escherichia_phage(27.27%)

transposase,integrase,head

attL 3007266:3007281|attR 3057420:3057435

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160029969.1\|2995008_2995326_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q716C2	Shigella_phage	1.9e-35	64.8
WP_160029970.1\|2995849_2996029_+	hypothetical protein	NA	NA	NA	NA
WP_160029971.1\|2996480_2997032_+	hypothetical protein	NA	NA	NA	NA
WP_160029972.1\|2997297_2997903_+	hypothetical protein	NA	NA	NA	NA
WP_160029973.1\|2997988_2998369_+	hypothetical protein	B4UTR7	Rhizobium_phage	3.6e-09	61.8
WP_160029974.1\|2998348_2999460_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.7e-06	25.6
WP_160029975.1\|2999512_2999701_+	hypothetical protein	NA	NA	NA	NA
WP_160029976.1\|2999697_2999871_+	hypothetical protein	NA	NA	NA	NA
WP_160029977.1\|2999867_3000032_+	hypothetical protein	NA	NA	NA	NA
WP_160029978.1\|3000373_3004159_+	hypothetical protein	NA	NA	NA	NA
WP_160029979.1\|3006933_3008238_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	2.3e-108	52.5
3007266:3007281	attL	NA	NA	NA	NA
WP_160029980.1\|3008240_3008582_+\|head	head decoration protein	NA	NA	NA	NA
WP_160029981.1\|3009945_3010719_+	hypothetical protein	D5LGZ3	Escherichia_phage	7.8e-35	42.9
WP_160029982.1\|3010986_3011343_+	hypothetical protein	NA	NA	NA	NA
WP_160031414.1\|3011592_3011712_+	hypothetical protein	NA	NA	NA	NA
WP_160029983.1\|3011944_3012271_-	hypothetical protein	NA	NA	NA	NA
WP_160029984.1\|3012778_3013564_+	hypothetical protein	D6QWP0	uncultured_phage	6.1e-35	46.2
WP_160029985.1\|3013651_3013945_+	hypothetical protein	NA	NA	NA	NA
WP_160029986.1\|3013941_3014106_+	hypothetical protein	NA	NA	NA	NA
WP_160029987.1\|3015354_3017283_+	hypothetical protein	A0A2D1GLP5	Escherichia_phage	5.3e-56	64.1
WP_160029988.1\|3017765_3018152_+	hypothetical protein	NA	NA	NA	NA
WP_160031415.1\|3018288_3019080_-	UTRA domain-containing protein	NA	NA	NA	NA
WP_160029989.1\|3019768_3020809_+	hypothetical protein	NA	NA	NA	NA
WP_160029990.1\|3020820_3021375_+	hypothetical protein	NA	NA	NA	NA
WP_160029991.1\|3024785_3024932_-\|transposase	transposase	NA	NA	NA	NA
WP_160029992.1\|3025144_3027742_-	hypothetical protein	NA	NA	NA	NA
WP_160029993.1\|3028383_3033834_+	hypothetical protein	NA	NA	NA	NA
WP_160031416.1\|3035622_3036237_-	ParB N-terminal domain-containing protein	A0A0F7L444	uncultured_marine_virus	3.7e-56	51.7
WP_160029994.1\|3036248_3037469_-	DUF3440 domain-containing protein	A0A068F1U8	Mycobacterium_phage	3.6e-58	30.6
WP_160029995.1\|3038106_3038301_-\|transposase	transposase	NA	NA	NA	NA
WP_160029996.1\|3039237_3040125_+	DNA-binding protein	NA	NA	NA	NA
WP_160029997.1\|3040938_3041277_+	hypothetical protein	NA	NA	NA	NA
WP_160029998.1\|3041358_3041739_+	hypothetical protein	NA	NA	NA	NA
WP_160029999.1\|3041710_3042175_+	hypothetical protein	NA	NA	NA	NA
WP_160030000.1\|3042296_3042845_+	hypothetical protein	NA	NA	NA	NA
WP_160030001.1\|3042917_3043403_+	hypothetical protein	NA	NA	NA	NA
WP_160030002.1\|3043490_3044093_+	DUF3085 domain-containing protein	NA	NA	NA	NA
WP_160030003.1\|3044173_3045187_+	DUF1738 domain-containing protein	A0A1B1IRD0	uncultured_Mediterranean_phage	5.8e-38	33.9
WP_160030004.1\|3045199_3045466_+	hypothetical protein	NA	NA	NA	NA
WP_160030005.1\|3045580_3046507_+	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_160030006.1\|3047351_3047627_-	hypothetical protein	NA	NA	NA	NA
WP_160030007.1\|3047736_3048369_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_160030008.1\|3048501_3049755_+	UPF0261 family protein	NA	NA	NA	NA
WP_160030009.1\|3049754_3050582_+	phosphoenolpyruvate hydrolase family protein	NA	NA	NA	NA
WP_160030010.1\|3050876_3052331_+	UvrD-helicase domain-containing protein	A0A2I7R5Z1	Vibrio_phage	7.0e-45	30.9
WP_160030011.1\|3052324_3054088_+	DNA-binding domain-containing protein	NA	NA	NA	NA
WP_160030012.1\|3054142_3055156_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
3057420:3057435	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041764

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection