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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP047158 Anoxybacillus sp. PDR2 chromosome, complete genome 11 crisprs TnsE_C,WYL,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,cas6,cas14j,DEDDh,DinG,csa3 0 20 6 0

Results visualization

1. NZ_CP047158
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047158_1 215352-215842 Orphan NA
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047158_2 440917-442409 TypeI-B NA
22 spacers
cas6,cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047158_3 461470-462703 Orphan NA
18 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047158_4 471593-474219 Orphan NA
39 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047158_5 625856-625958 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047158_6 2284417-2284511 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047158_7 2295668-2296092 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047158_8 2305701-2306862 Orphan NA
17 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047158_9 2315753-2316977 Orphan NA
18 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047158_10 2338270-2338569 Unclear NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047158_11 2377973-2381873 TypeI-B,TypeI-A? NA
58 spacers
cas8b1,cas7b

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP047158_2 2.1|440947|38|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT 440947-440984 38 NZ_CP015437 Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence 45951-45988 0 1.0
NZ_CP047158_2 2.3|441080|37|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT 441080-441116 37 NZ_CP015437 Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence 31450-31486 0 1.0
NZ_CP047158_3 3.1|461500|36|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT 461500-461535 36 NZ_CP015437 Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence 43577-43612 0 1.0
NZ_CP047158_4 4.1|471623|36|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT 471623-471658 36 NZ_CP015437 Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence 46064-46099 0 1.0
NZ_CP047158_9 9.18|2316909|39|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT 2316909-2316947 39 NZ_CP015437 Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence 43150-43188 0 1.0
NZ_CP047158_9 9.6|2316116|35|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT 2316116-2316150 35 NC_019544 Deep-sea thermophilic phage D6E, complete genome 19647-19681 1 0.971
NZ_CP047158_2 2.9|441476|39|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT 441476-441514 39 NZ_CP015437 Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence 31010-31048 2 0.949
NZ_CP047158_11 11.44|2380870|37|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT 2380870-2380906 37 NC_009737 Bacillus virus 1, complete genome 11980-12016 3 0.919
NZ_CP047158_8 8.17|2306797|36|NZ_CP047158|CRISPRCasFinder,CRT 2306797-2306832 36 NC_029073 Geobacillus virus E3, complete genome 138005-138040 4 0.889
NZ_CP047158_8 8.34|2306798|36|NZ_CP047158|PILER-CR 2306798-2306833 36 NC_029073 Geobacillus virus E3, complete genome 138005-138040 4 0.889
NZ_CP047158_11 11.4|2378204|38|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT 2378204-2378241 38 MN693472 Marine virus AFVG_25M86, complete genome 40460-40497 6 0.842
NZ_CP047158_4 4.12|472360|35|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT 472360-472394 35 NC_029073 Geobacillus virus E3, complete genome 116163-116197 7 0.8
NZ_CP047158_2 2.4|441147|35|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT 441147-441181 35 AP013610 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26-MedDCM-OCT-S45-C147, *** SEQUENCING IN PROGRESS *** 7422-7456 9 0.743
NZ_CP047158_4 4.24|473158|37|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT 473158-473194 37 NC_023007 Bacillus phage vB_BanS-Tsamsa, complete genome 54709-54745 10 0.73
NZ_CP047158_8 8.4|2305932|35|NZ_CP047158|CRISPRCasFinder,CRT 2305932-2305966 35 AP013861 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S40-C106, *** SEQUENCING IN PROGRESS *** 14382-14416 10 0.714
NZ_CP047158_8 8.4|2305932|35|NZ_CP047158|CRISPRCasFinder,CRT 2305932-2305966 35 MK562505 Shigella phage Silverhawkium, complete genome 22390-22424 10 0.714
NZ_CP047158_8 8.10|2306329|38|NZ_CP047158|CRISPRCasFinder,CRT 2306329-2306366 38 NC_015057 Granulicella tundricola MP5ACTX9 plasmid pACIX901, complete sequence 70333-70370 10 0.737
NZ_CP047158_8 8.21|2305933|35|NZ_CP047158|PILER-CR 2305933-2305967 35 AP013861 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S40-C106, *** SEQUENCING IN PROGRESS *** 14382-14416 10 0.714
NZ_CP047158_8 8.21|2305933|35|NZ_CP047158|PILER-CR 2305933-2305967 35 MK562505 Shigella phage Silverhawkium, complete genome 22390-22424 10 0.714
NZ_CP047158_8 8.27|2306330|38|NZ_CP047158|PILER-CR 2306330-2306367 38 NC_015057 Granulicella tundricola MP5ACTX9 plasmid pACIX901, complete sequence 70333-70370 10 0.737
NZ_CP047158_11 11.37|2380405|35|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT 2380405-2380439 35 MF564201 Escherichia phage vB_EcoS-95, complete genome 31620-31654 10 0.714
NZ_CP047158_11 11.33|2380141|37|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT 2380141-2380177 37 MN694363 Marine virus AFVG_250M224, complete genome 30876-30912 11 0.703
NZ_CP047158_11 11.37|2380405|35|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT 2380405-2380439 35 HQ634193 Cyanophage P-RSM6 genomic sequence 113096-113130 11 0.686
NZ_CP047158_2 2.4|441147|35|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT 441147-441181 35 MH616950 Microviridae sp. isolate ctdc50, complete genome 2780-2814 12 0.657

1. spacer 2.1|440947|38|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 (Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cttggaagggggctgataccatgcaggctcgctttctt	CRISPR spacer
cttggaagggggctgataccatgcaggctcgctttctt	Protospacer
**************************************

2. spacer 2.3|441080|37|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 (Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tatcaatagcgattgttctcacaattaaaacaactcc	CRISPR spacer
tatcaatagcgattgttctcacaattaaaacaactcc	Protospacer
*************************************

3. spacer 3.1|461500|36|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 (Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

aacgaattgaaacgccgcttggacgagacagaagta	CRISPR spacer
aacgaattgaaacgccgcttggacgagacagaagta	Protospacer
************************************

4. spacer 4.1|471623|36|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 (Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cattttagaaatgaactcgttcaagcggtcaacaat	CRISPR spacer
cattttagaaatgaactcgttcaagcggtcaacaat	Protospacer
************************************

5. spacer 9.18|2316909|39|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 (Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ctcatcgtctgagttggttccttcaccgtttgcagccgc	CRISPR spacer
ctcatcgtctgagttggttccttcaccgtttgcagccgc	Protospacer
***************************************

6. spacer 9.6|2316116|35|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT matches to NC_019544 (Deep-sea thermophilic phage D6E, complete genome) position: , mismatch: 1, identity: 0.971

ggatatatcaacaaactacttttttggtagcggtg	CRISPR spacer
ggatatatcaacaaactacttttttggtagtggtg	Protospacer
******************************.****

7. spacer 2.9|441476|39|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 (Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.949

ttagaccggacattgacgtattttttcaagatggtgcta	CRISPR spacer
ttaggccggacattgacgtattctttcaagatggtgcta	Protospacer
****.*****************.****************

8. spacer 11.44|2380870|37|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT matches to NC_009737 (Bacillus virus 1, complete genome) position: , mismatch: 3, identity: 0.919

acgctatttccctcaccatcgagcagcatggtataga	CRISPR spacer
acgctatttccctcaccatcgagtagcatggtgtaaa	Protospacer
***********************.********.**.*

9. spacer 8.17|2306797|36|NZ_CP047158|CRISPRCasFinder,CRT matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 4, identity: 0.889

cgctctttctgtttcaaaataaccatcgatatattt	CRISPR spacer
taatctttctgtttcaaaataaccatcgatgtattt	Protospacer
.. ***************************.*****

10. spacer 8.34|2306798|36|NZ_CP047158|PILER-CR matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 4, identity: 0.889

cgctctttctgtttcaaaataaccatcgatatattt	CRISPR spacer
taatctttctgtttcaaaataaccatcgatgtattt	Protospacer
.. ***************************.*****

11. spacer 11.4|2378204|38|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT matches to MN693472 (Marine virus AFVG_25M86, complete genome) position: , mismatch: 6, identity: 0.842

aaagaactataaagaggagtaaataaa-atgaatttagt	CRISPR spacer
aaactactataaagaggagtaaataaacatgaaccaag-	Protospacer
***  ********************** *****.. ** 

12. spacer 4.12|472360|35|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 7, identity: 0.8

cttgaa---atagcaatagtttgtgtaccaatatcaat	CRISPR spacer
---gaacatacggcaattgtttgagtaccaatatcaat	Protospacer
   ***   *..***** ***** **************

13. spacer 2.4|441147|35|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT matches to AP013610 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26-MedDCM-OCT-S45-C147, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.743

agggctgtagattcagaatttaaagctgcaacagc	CRISPR spacer
ggagaacaagattcagaattaaaaactgcaacaga	Protospacer
.*.*    ************ ***.********* 

14. spacer 4.24|473158|37|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT matches to NC_023007 (Bacillus phage vB_BanS-Tsamsa, complete genome) position: , mismatch: 10, identity: 0.73

attcaatccttctattcaaaatctacgcctaaactaa	CRISPR spacer
aaattatccttttattcaaaatctacgtctacatcac	Protospacer
*  . ******.***************.*** *..* 

15. spacer 8.4|2305932|35|NZ_CP047158|CRISPRCasFinder,CRT matches to AP013861 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S40-C106, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.714

atcattct-----cccttctaaatcaacaatcatttttat	CRISPR spacer
-----ccttgaactccttcaaaatcaacaataatttttac	Protospacer
     .**     .***** *********** *******.

16. spacer 8.4|2305932|35|NZ_CP047158|CRISPRCasFinder,CRT matches to MK562505 (Shigella phage Silverhawkium, complete genome) position: , mismatch: 10, identity: 0.714

atcattctcccttctaaatcaacaatc----atttttat	CRISPR spacer
tccattctctctgctaaatcaacaatccagaatcg----	Protospacer
 .*******.** **************    **.     

17. spacer 8.10|2306329|38|NZ_CP047158|CRISPRCasFinder,CRT matches to NC_015057 (Granulicella tundricola MP5ACTX9 plasmid pACIX901, complete sequence) position: , mismatch: 10, identity: 0.737

gtcacatcga------cgacttgtacgagtggataccgaaaaag	CRISPR spacer
------tcaggaagttcgacttgtacgaggggataccgacaaag	Protospacer
      **..      ************* ********* ****

18. spacer 8.21|2305933|35|NZ_CP047158|PILER-CR matches to AP013861 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S40-C106, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.714

atcattct-----cccttctaaatcaacaatcatttttat	CRISPR spacer
-----ccttgaactccttcaaaatcaacaataatttttac	Protospacer
     .**     .***** *********** *******.

19. spacer 8.21|2305933|35|NZ_CP047158|PILER-CR matches to MK562505 (Shigella phage Silverhawkium, complete genome) position: , mismatch: 10, identity: 0.714

atcattctcccttctaaatcaacaatc----atttttat	CRISPR spacer
tccattctctctgctaaatcaacaatccagaatcg----	Protospacer
 .*******.** **************    **.     

20. spacer 8.27|2306330|38|NZ_CP047158|PILER-CR matches to NC_015057 (Granulicella tundricola MP5ACTX9 plasmid pACIX901, complete sequence) position: , mismatch: 10, identity: 0.737

gtcacatcga------cgacttgtacgagtggataccgaaaaag	CRISPR spacer
------tcaggaagttcgacttgtacgaggggataccgacaaag	Protospacer
      **..      ************* ********* ****

21. spacer 11.37|2380405|35|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT matches to MF564201 (Escherichia phage vB_EcoS-95, complete genome) position: , mismatch: 10, identity: 0.714

gtgatgaacagcttcagcaacaattgcagcaaatg	CRISPR spacer
cgcctgaacggcttcaccaacaattgcagaatttt	Protospacer
    *****.****** ************ *  * 

22. spacer 11.33|2380141|37|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT matches to MN694363 (Marine virus AFVG_250M224, complete genome) position: , mismatch: 11, identity: 0.703

ggagcagatgaaaatggaacaacaaatggcgatgaaa	CRISPR spacer
aatgcagatgcaaatgcaacaacaaatggcggcttct	Protospacer
.. ******* ***** **************..    

23. spacer 11.37|2380405|35|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT matches to HQ634193 (Cyanophage P-RSM6 genomic sequence) position: , mismatch: 11, identity: 0.686

gtgatgaacagcttcagcaacaattgcagcaaatg	CRISPR spacer
ccaaccaacagcttcagcagcaattgcatcacggt	Protospacer
 ..*. *************.******** ** .  

24. spacer 2.4|441147|35|NZ_CP047158|PILER-CR,CRISPRCasFinder,CRT matches to MH616950 (Microviridae sp. isolate ctdc50, complete genome) position: , mismatch: 12, identity: 0.657

agggctgtagattcagaatttaaagctgcaacagc	CRISPR spacer
gcaagaatagattcagagattaaagctgcaactaa	Protospacer
. ..  .**********. ************* . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 156097 : 206124 34 Catovirus(25.0%) tRNA,transposase,integrase attL 187014:187029|attR 203733:203748
DBSCAN-SWA_2 366472 : 374151 7 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_3 899242 : 940922 46 Shigella_phage(25.0%) coat,holin,transposase NA
DBSCAN-SWA_4 1809763 : 1876597 51 Enterobacteria_phage(33.33%) transposase,integrase attL 1808897:1808912|attR 1820526:1820541
DBSCAN-SWA_5 2536466 : 2546297 12 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_6 3358207 : 3363902 7 Streptococcus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage