CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP047176	Rathayibacter sp. VKM Ac-2759 chromosome, complete genome	4 crisprs	WYL,csa3,DinG,cas3,DEDDh,PD-DExK,RT	1
NZ_CP047179	Rathayibacter sp. VKM Ac-2759 plasmid unnamed3, complete sequence	0 crisprs	NA	0
NZ_CP047178	Rathayibacter sp. VKM Ac-2759 plasmid unnamed2, complete sequence	0 crisprs	NA	0
NZ_CP047177	Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence	0 crisprs	csa3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047176_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047176_1

117766-117876

Orphan

Consensus_repeat	Method
GCCCAGTGCGACAACTCTTGGACACTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047176_1

>merge|NZ_CP047176|1|117766-117876|CRISPRCasFinder
GCCCAGTGCGACAACTCTTGGACACTCACCGACGCCGACCGGGCCGCGCCCGCGGCGAGACTCCAGGAGTTGTCGTACTCGACTGCCCAGTACGACAACTCTTGGACACTC

>NZ_CP047176|1|1|117766-117876|CRISPRCasFinder
GCCCAGTGCGACAACTCTTGGACACTC	ACCGACGCCGACCGGGCCGCGCCCGCGGCGAGACTCCAGGAGTTGTCGTACTCGACT
GCCCAGTACGACAACTCTTGGACACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047176.1\|WP_159905197.1\|120482_122630_+\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|274529
NZ_CP047176.1\|WP_159905201.1\|127288_128197_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223472
NZ_CP047176.1\|WP_159905188.1\|110051_111461_-\|NtaA/DmoA-family-FMN-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|274819
NZ_CP047176.1\|WP_159905189.1\|111457_113116_-\|nickel-ABC-transporter-ATP-binding-protein-NikE	unknown	unknown	gnl\|CDD\|224048
NZ_CP047176.1\|WP_159905192.1\|116784_117711_+\|TIGR03560-family-F420-dependent-LLM-class-oxidoreductase	unknown	unknown	gnl\|CDD\|274648
NZ_CP047176.1\|WP_159905187.1\|108834_110055_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173852
NZ_CP047176.1\|WP_159905196.1\|119905_120394_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182015
NZ_CP047176.1\|WP_159910065.1\|126518_127292_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224096
NZ_CP047176.1\|WP_159905199.1\|123730_124780_+\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176247
NZ_CP047176.1\|WP_159905185.1\|106588_107413_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379388
NZ_CP047176.1\|WP_159905193.1\|117966_118257_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP047176.1\|WP_159905194.1\|118270_118795_+\|DUF2017-family-protein	unknown	unknown	gnl\|CDD\|378185
NZ_CP047176.1\|WP_159905184.1\|106285_106483_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047176.1\|WP_159905186.1\|107476_108838_-\|NtaA/DmoA-family-FMN-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|274819
NZ_CP047176.1\|WP_159905191.1\|114893_116510_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173857
NZ_CP047176.1\|WP_159905190.1\|113934_114894_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223674
NZ_CP047176.1\|WP_159905200.1\|125068_126373_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270450
NZ_CP047176.1\|WP_159905198.1\|122906_123590_+\|DNA-repair-protein	unknown	unknown	gnl\|CDD\|178801
NZ_CP047176.1\|WP_159910064.1\|113108_113909_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224094
NZ_CP047176.1\|WP_159905195.1\|118953_119772_+\|DUF1206-domain-containing-protein	unknown	unknown	gnl\|CDD\|377695

Protein	Function_ID	Function_description	E-value
NZ_CP047176.1\|WP_159905197.1\|120482_122630_+\|AAA-domain-containing-protein	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP047176.1\|WP_159905188.1\|110051_111461_-\|NtaA/DmoA-family-FMN-dependent-monooxygenase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP047176.1\|WP_159905189.1\|111457_113116_-\|nickel-ABC-transporter-ATP-binding-protein-NikE	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NZ_CP047176.1\|WP_159905192.1\|116784_117711_+\|TIGR03560-family-F420-dependent-LLM-class-oxidoreductase	gnl\|CDD\|274648	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis. [Unknown function, Enzymes of unknown specificity].	1.96836e-99
NZ_CP047176.1\|WP_159905187.1\|108834_110055_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173852	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.	1.18381e-118
NZ_CP047176.1\|WP_159905196.1\|119905_120394_+\|hypothetical-protein	gnl\|CDD\|182015	PRK09646, PRK09646, ECF RNA polymerase sigma factor SigK.	8.98956e-08
NZ_CP047176.1\|WP_159910065.1\|126518_127292_+\|ABC-transporter-permease-subunit	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	4.49527e-74
NZ_CP047176.1\|WP_159905199.1\|123730_124780_+\|zinc-binding-dehydrogenase	gnl\|CDD\|176247	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	0
NZ_CP047176.1\|WP_159905185.1\|106588_107413_+\|hypothetical-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	5.99026e-06
NZ_CP047176.1\|WP_159905193.1\|117966_118257_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	4.33028e-35
NZ_CP047176.1\|WP_159905194.1\|118270_118795_+\|DUF2017-family-protein	gnl\|CDD\|378185	pfam09438, DUF2017, Domain of unknown function (DUF2017). This is an alpha-helical domain found in gene neighborhoods that contain genes encoding ubiquitin, cysteine synthases and JAB peptidases.	1.29383e-38
NZ_CP047176.1\|WP_159905201.1\|127288_128197_+\|ABC-transporter-permease-subunit	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.80121e-86
NZ_CP047176.1\|WP_159905186.1\|107476_108838_-\|NtaA/DmoA-family-FMN-dependent-monooxygenase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP047176.1\|WP_159905191.1\|114893_116510_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173857	cd08492, PBP2_NikA_DppA_OppA_like_15, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.01669e-151
NZ_CP047176.1\|WP_159905190.1\|113934_114894_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	7.86988e-73
NZ_CP047176.1\|WP_159905200.1\|125068_126373_+\|extracellular-solute-binding-protein	gnl\|CDD\|270450	cd14747, PBP2_MalE, Maltose-binding protein MalE; possesses type 2 periplasmic binding fold. This group includes the periplasmic maltose-binding component of an ABC transport system from the phytopathogen Xanthomonas citri and its related bacterial proteins. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.57885e-80
NZ_CP047176.1\|WP_159905198.1\|122906_123590_+\|DNA-repair-protein	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	6.51166e-38
NZ_CP047176.1\|WP_159910064.1\|113108_113909_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.92856e-61
NZ_CP047176.1\|WP_159905195.1\|118953_119772_+\|DUF1206-domain-containing-protein	gnl\|CDD\|377695	pfam06724, DUF1206, Domain of Unknown Function (DUF1206). This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.	1.91941e-12

>NZ_CP047176.1|WP_159905192.1|116784_117711_+|TIGR03560-family-F420-dependent-LLM-class-oxidoreductase
MQFRVFTEPQQGASYDDLLAIAQATESLGYDGFFRSDHYLRMGDGDAGYGPTDAWTSLAGLARETERIALGTLVSSVTYRPPGILAIQVAQVDAMSGGRVELGLGTGWFEEEHAAYGIPFPSRRFDLLEEQLEIVTGLWSTPVGERYSFAGEHYTLTNSPALPKPARLPLPVIVGGGGPKRTPALAARFASEFNLPFPEFDAIPGAFERVDAACRAIGREPSSLVHSVALIAVGGGTEAEFARRAAAIGREGAELREHGIAGGVDEAVDRLESLREAGAERVYLQFMDLRDLDHVDFFAREVLPRLSA
>NZ_CP047176.1|WP_159905191.1|114893_116510_-|ABC-transporter-substrate-binding-protein
MFSSRSRFAVTAGALLMAGLLAGCTAQAANQPASTSGTPVEGGSLVFADIELQTDFQVQKGFNYTQSNVFRNIADRLTAFDPESGEVVPWIASEWTINSDNTEFTFTIRPGVTFSDGTPLDAAAVKANLDQLGLGDEAKKIVKNRDFIGYASSEVTGDDTVVVRLSEPNADFLKATAASTASLVSTSTLALDYAGQADISKIVASGPFVFESQVPDQEIRFTKRDDYAWPSSISTNTGAAHLDEVVFRAIPEVGLRVGAVSSGQADVARGIQPSDEAAATASGIELAVAQAPELTANWAAFRGEAPVVSDQDVRRALQIGFDRDALKSTVLSDSYPLSGSVLNRSAPGFVDLSDQLAYDPDEAEKLLEDAGWTVGSDGIREKDGQRLTLSVAASPRSVVIKPAFEFIESEWRKIGVELVNNAGDSAILATALGDPTYPAIGSRQFYLGGLGPLFSAAGNTNTYVSDDELNTLFATERAATDPAARDAVLADIQERLVLGTNLLVPLWDEVQVHAVGQGVHVTFDGGTAPLLQEAWIQE
>NZ_CP047176.1|WP_159905190.1|113934_114894_-|ABC-transporter-permease-subunit
MLRYLAGRAGQALLVLWLTYTIVFVVVQLLPSDPVTIFLASDSGADPALIDQVSALYGYDRPWYEQYALQLLNLLRGEFGFSLSSGQPVLTRIGDVVGSTIALASTGLLLSVVIAVGVSAAAFLIDAPRLKALVVAVPSLFSSVPVFWLGIVVLQVFSFQLRILSLFPDGSLLSLLIPALVLAIPVSAPIAQVLLSGVEQASELAFVKTARAKGARPLRVFWRHVLRSSLGATTAVIGTTLGILLAGSVITETVFARPGLGSVLLKAVIAQDVPLVQGLVLLTTLVVVATTLVLDLIAPILDPRILRTRGQKGLVRLGA
>NZ_CP047176.1|WP_159910064.1|113108_113909_-|ABC-transporter-permease-subunit
MPVPGVATALSAVLILVVLLWLIAPGLFTSSDPLTGDSAQVFLPPSPAHLFGTDHLGRDVLARMIYGTSQTALTAGLAVVVGLVLGTLVGIVSSTLGPWAESISMRVIDALIALPAFMIALFVVSAYGAGPISLGIGVGIGSVVLFARVTRAEVLRVRSLDYLEASLLAGAGYLRQLVGHVLPAIAGALLALAVVDFGAAVLAVSALGFLGFGTPPPTPEWGLIIAEGRNYLANAWWMTALPGTFVLVVVVALGVLSRSLGKAARA
>NZ_CP047176.1|WP_159905189.1|111457_113116_-|nickel-ABC-transporter-ATP-binding-protein-NikE
MPDTPALALEGLSLDYRLGRRSVRALDDVSFSVARGEIVALVGESGSGKSTIANAATGLLPTDASVASGRIVVDGTEVTRLSERRWSRIRGRKVGLIPQDPGASLTPVLTIGAQVAEIFAIRGERLGRAERRARSIELLEIAEVSRAADRLSQFPHELSGGLKQRILIAIAFGLNPSLLVADEPTSALDVTVQKQILRVLDRLAADHGTSVLFVTHDLALATDHASRALVLQRGRLLEDAPVERIVDSPAVDYTRELIAHARATQSAPPPATSAPTAPVLEVAGLSKTFAARRGSEPIAAVDDVSFSLGEGRTLALVGESGSGKSTTARMILRLLDPTAGSISVGGRDVTAVSGRDRLDLWRTVQLVYQNPDSALDPRWSVGRIIAEPLPATTPARERRARVEELLAAVSLPDGAIDKRPGELSGGQRQRVAIARALAPRSSLVVLDEALSALDVITQERVLQLIETIQRDYGVSYLFISHDLSTVRRLAHEVVVLRAGRVVEQGASRDVLAAPRTDYVRELLAAVPGRRLLSEVGPTIPSTIQSDHPEEPR
>NZ_CP047176.1|WP_159905188.1|110051_111461_-|NtaA/DmoA-family-FMN-dependent-monooxygenase
MTADAPRKPLRFSAFVMNTASHIQHGLWRHPEARQHEFTSLALWTDLARTLERGRFDAIFFADVLGLYGPARGDYTVNAREGLQFPSNDPSVLLGALAAVTEHLGLVFTSSVLQAHPFEFARRVSTLDHLSGGRVGWNVVTSAQESAARNFGADGLEEHDERYRWAEEYLEVVYKLWEGSWDDDALVRDKAIGHPQDAVFADATGIHRIDHEGPRYRVAGPHQSPPSPQRTPVIFQAGSSPAGSAFAARHAEGQFVLTSGLDRTRTLIEQTRAKVSATGRDPGDLAFFLGLAFVTGDTEEAAQRKAAELDEYLSSDGFLLHSNLAFDPRTGEALDPDTPLSELSTGTNVSHLQWMRELSPDPDPRVRDLATLAAKLRGRIVGTPEQIADRLAEWQEAGIDGINVMNWILPGSFEEFVDHVIPVLQERGLAQREYTPGTLRQKLFGRDQLPEEHPARRYRGAFSAAEAAR
>NZ_CP047176.1|WP_159905187.1|108834_110055_-|acyl-CoA-dehydrogenase
MSLSASDLARFRAVIAEVGVESREREQERRLLHPEIAALVASGFTALRVPVALGGAGATLPELFMLLVELGAADPNLPQALRGHFGLVERFLVGGTERDEEWLRRAGAGALFANSQAEKGGSTTTEARLARVDGEWRLTGRKFYTTGTLYADYTWTGALDASGERYGAVVPTAAPGVQVLDDWTGFGQRLTASGTTIFDDVPLGDENVYRVTAEPDWYTLDFRLLLHLLLQATMAGIGRAALEDTLRFVRGRSRSFGVPGESLPREDPRVQSVVGELASRVAAVEALVHDVARDYAAVRERRHADEAERTADYVRVQIRQFEAQQIAVADIVAVTSRLFEVGGASAVLTESGLDRHWRNARTIASHNPAVFRQAAIGAYLLNGTEPETDFRQTLAAPADSMQEAPA
>NZ_CP047176.1|WP_159905186.1|107476_108838_-|NtaA/DmoA-family-FMN-dependent-monooxygenase
MTRPLRFNAFVMNTPSHIHHGQWRQARARHESFEDLSFWVEVAQTLERGVFDALFFADVVGTYGAVGSSLEVNAREGLQLPNNDPSVLLAALIGSTEHLGLAMTSSILQAHPFEFARRMSTLDHLSKGRVAWNIVTSYQENAARNFGLGRLTEHDARYEQAEEYLDVVYKLWEGSWDDDASTRDKSGAFSDPGSVHRIDHVGEHYRVEGPHLSAPSPQRTPYLFQAGSSPAGRAFAARHAEAQFVGGSTTEQTRELIASTRALTVAAGRDADDVLFFAPLSVIVGSTEREAREREAEIDAHTSIDAHLLHAGMSVDQADGRPFPPETKLRDITTNGNRSTLESMIRLLPDRDATVADLGRLAVRRHPRVVGTPEQIADELSELRDAGVDGINLAHWTLPDTYTDFVDHVMPVLRSRGLARSHYEPGGLRERLTGSARVNPRHPAARYRGAFRA
>NZ_CP047176.1|WP_159905185.1|106588_107413_+|hypothetical-protein
MTMPPPPAPPAPEPNDAPLPAYGTPPAPARSGLAITALILGITSVVIAVLPFVFGLAFPIAIAGVVVGIIALVRRKPPRAFSITGLVLSAVGFVIAVVVVIVAVVQLASALDELDGTGFSESSETAAPLPLDEETTEEEPPAADDLTLGFGETLTYTDGVSLSVTAPTEFAPTEYASGADQAVNVVFTFTIENGSDQNLDPYTYAAVSSGGVEASRIFDIDNAVGDISTGPSTVILPGGSVTWQEAYSLTDPASIVLQLSPSFDYQEAIFTNTQ
>NZ_CP047176.1|WP_159905184.1|106285_106483_+|hypothetical-protein
MSSFGFDAPEDVTDTTRPDGDSLPVPPEDPAQIDDGESAGEGADARLAGEGDDDPEEMPAVPSPS
>NZ_CP047176.1|WP_159905193.1|117966_118257_+|ATP-dependent-Clp-protease-adapter-ClpS
MPDTIERPDERLTTRSAADVPWILLVWDDPVNLMSYVSYVFRSYFGFGRAEAERLMLQVHTEGRAVVATGNREEMERHVEAMHGYGLWATLQKADA
>NZ_CP047176.1|WP_159905194.1|118270_118795_+|DUF2017-family-protein
MRAFRRDSSGAAVARFDREEAGILRHLAGEMLELLDRGATSEEARSDPALARLLPDAYRDDAEAAAEFRRFTGADLAGRKMDDARAITAALDAGDGSGHGRVFAGLGEVSVRLEPPQALSWLRALTDMRLALAVRLGIVDTDDVEPEGENGAAIRSVYDWLGSVQDGLVRAVDV
>NZ_CP047176.1|WP_159905195.1|118953_119772_+|DUF1206-domain-containing-protein
MNTQAGTQAKRTANEAQDSTAVRTLARFGFAANGLVHLLIGGIALGVAGGGGGEADQTGALGALAAQPGGVFVLWVCAVGLLGLALWGVLEVFLVTPGDSTAETWGKRAKEAAKAVVYAALGVTTLRFALGGSSSSSQSSESASAQVLQAPGGVVLLVIAGLAVLAVGGVFVYRGVSKKFQKNIATPGGTAGTVVTWLGIVGYAAKGVVLAVLGVLIIVAAVTHDPSQAGGLDEALKTLVELPFGVALLGVVAAGLIAYGAFCFARARWPRL
>NZ_CP047176.1|WP_159905196.1|119905_120394_+|hypothetical-protein
MSEDDAGRSRPALAEAASRLLHRVASGDRAAFAELFDHFSALFTASVSTVHAEHALRDRICTEAFTEVWRRAGEGARATEPVLWLLEVLCETLHSSAGSARRPLGDGLLALSCPDRELLLLASAGRYSQPEIAALTGVGEPRLRTILRDALRTLRGGELLTA
>NZ_CP047176.1|WP_159905197.1|120482_122630_+|AAA-domain-containing-protein
MQAGQQDEQSALEQYGVDLTAIAASGKLDPVIGRDAEIRRVSQVLTRRTKNNPVLIGEPGVGKTAVVEGLAQRIVAGDVADSLKDKRLVSLDLSALIAGAKYRGEFEERLKAVLKEINDSDGRIITFIDELHTLMGAGGGDGSVAAANMLKPMLARGELRMIGATTLDEYRQYIEKDAALERRFQQVFVGEPTVEDTVAILRGLKERYEAHHKVAIADAALVAAASLSNRYITARQLPDKAIDLIDEAASRLRMEIDSAPVEIDELRRSVDRLKLEELALKKEKDEASKARLEKLREDLARRGAQLAELQQRWERERASLNRVGDLKNKLDALRVEAERAQREGRLERASRLLYGDIPVIERELAAAEKEEEPAEGRMVNEQVTADDIAAVIAAWTGIPVGRLLQGETEKLLHLETELHRRLIGQDEAVSAVSDAVRRTRAGISDPDRPTGSFLFLGPTGVGKTELAKALADHLFDDEKAMVRIDMSEYGEKFAVSRLVGAPPGYIGYEQGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTILILTSNLGSQFLIDPTLSRSQKEEAVQQMVRQAFKPEFVNRLDDIVIFQALDRTELGEIVSLYVDRLSRRLGERRLELAVTPAARGWLADRGYDPQYGARPLRRLMQHEIDDRLATALLDGSIRDGDVVLVEVADDGDSLTVSAGLPAAV
>NZ_CP047176.1|WP_159905198.1|122906_123590_+|DNA-repair-protein
MLPLPEPPAGLRMADLAPEQRPRERLRALGAESLTDAETLAILIGAGVRGANATVVAQQLLARFGGIDALSRAGVADLVRHRGIGEVAACRIVASFELRRRMNRASRTARVLDAAALAALVTPLLAARPAETVLAVALTDAGAVRDVLTLADGPPAHADLPVSGVLAEVLARGAATVALAHSHSGEARVLPSDRAATRALIEGAEACGLRFLAHVVVGSDGWEEAPP
>NZ_CP047176.1|WP_159905199.1|123730_124780_+|zinc-binding-dehydrogenase
MRATLIHGERDIRLEEVPDPVLSTGRDAIVRVTAACVCGSDLWPYRGVTPTKEAHRIGHEFVGVVESVGDDVRDVAPGDFVIAPFYVCDGTCANCANGVSTSCLTGGWWGAEVGEEGFADGAQGEKVRVPLADGTLFRVDPDPDPALIPSLLTLADVMGTGHHAAVSAGVTAGSTVAVVGDGAVGLCAVLAAQRLGATTIIAMSRHASRQALATRFGATHIVDTRGDEGVAAVRELTGGIGADCVLECVGTKESMQQALDSARPGGMVGYVGVPNGGPELPVRQMFGSNVGVNGGVAPVRGYMAELLPDVLSGAIEPGLVFDLELPLDEIAEAYAAMDERRAIKTLVRP
>NZ_CP047176.1|WP_159905200.1|125068_126373_+|extracellular-solute-binding-protein
MKRTAPPARSRLLLTGGVLAVTALALAGCGRGTDTGAAASADLTVDDSAATGTVTLWAPDGDAQQLDTVLADYEAENPDLDLEVTLVPSDEYNTKLQTAVAAGTAPDIAFLYTEAQTQFLASDAFAPVPDDLVDSDSFFEGSWDAGQYDGTTYSVPWYAYTRVLIYRSDFAEAGGVTAPATWDETIPFFEGLEAGGAESGYGADVGWDTYNGQTLATFAHQAGADLLSDDGSAWQLDSPEMVQAAEFNASFFSSGVSSPDTPQFLDAQPYLVSGQTGSMISGPWVVATLDQTAGEEGWTASHIATAVLPAGPDNGSGQLAGGSWGVTAASDNASSAWKVVREMAQEDTQVAQYAAAGSMPAVVDAWSDPSIADQPLLSAFFTQLQDVEPLPAVTTWTQVSTILGQEMEKVARGKETAADAMAAAQQQAASIGTE
>NZ_CP047176.1|WP_159910065.1|126518_127292_+|ABC-transporter-permease-subunit
MSLTDIRGADLQQPFGVDFTGLENYAVLLGDAAFLRSVANTLYFVVIGVPLTMAVGFVLALALNTGIRRLRGVFRALFYAPVVTNIVSVALIWQYAFNQNGTINEFLGAIGFAGPNWLGDENLAMPVVILLGIWRNFGTAMLLFLAGLQSVPEDVHEAASLDGAGPWRRLVSITVPLLMPTTLLVSVLLSVFFLQVFDEPYLLTGGGPLGSTESMALYTYHQFGFGNIGVSSAASFLLLLIVALVSVLQFRLLRSRS
>NZ_CP047176.1|WP_159905201.1|127288_128197_+|ABC-transporter-permease-subunit
MTVTAPPIVPVPPAPTRQEPERPPRTRASSERLRRAVLYPALTVLAVITLLPFVWVFSGSLRTTADISANPGAWLPAEATLENFGRLFSQAGFSGYLGNSLVVAGVVVAGNVLAAAAAGYALAKLDFAGRRAATIAVLIALMMPFSAVFVPQFVVTVRLGLVNTLAGIALPSLVLPISIFIVRQFAESIPEELLEAARIDGASELRIFAQVFLPLAGPALATVTIMSFLAAWNNFIWPLLVAQNASTYTLPVGLAATSQASQNVTDYGLVLAGAVVVMLPVLVLFLLLQRYFVQGIVATGLK

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Crispr_ID: NZ_CP047176_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047176_2

1216209-1216322

Orphan

Consensus_repeat	Method
CGAGACTCCAGGAGTTGTCGCACCGGGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047176_2

>merge|NZ_CP047176|2|1216209-1216322|CRISPRCasFinder
CGAGACTCCAGGAGTTGTCGCACCGGGGCGCCGAGTGCGACAACTCCTGAACACTCGCCGCGCACCCGCAGTGGTGGACCGGGTCGAGACTCCAGGAGTTGTCGCACTGGGGCG

>NZ_CP047176|2|2|1216209-1216322|CRISPRCasFinder
CGAGACTCCAGGAGTTGTCGCACCGGGGCG	CCGAGTGCGACAACTCCTGAACACTCGCCGCGCACCCGCAGTGGTGGACCGGGT
CGAGACTCCAGGAGTTGTCGCACTGGGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047176.1\|WP_094742810.1\|1218277_1218769_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP047176.1\|WP_159906197.1\|1208426_1209248_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
NZ_CP047176.1\|WP_159906215.1\|1222433_1223546_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047176.1\|WP_159906209.1\|1216409_1218194_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP047176.1\|WP_159906221.1\|1226240_1227173_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224096
NZ_CP047176.1\|WP_159910143.1\|1212687_1213626_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP047176.1\|WP_159906195.1\|1207273_1208311_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176187
NZ_CP047176.1\|WP_159910141.1\|1204596_1205586_-\|putative-sulfate-exporter-family-transporter	unknown	unknown	gnl\|CDD\|225411
NZ_CP047176.1\|WP_159910142.1\|1205576_1207145_-\|phospholipid-carrier-dependent-glycosyltransferase	unknown	unknown	gnl\|CDD\|224839
NZ_CP047176.1\|WP_159906219.1\|1224898_1226182_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP047176.1\|WP_159906201.1\|1210095_1211673_+\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237012
NZ_CP047176.1\|WP_159906205.1\|1213635_1214571_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|235110
NZ_CP047176.1\|WP_159906199.1\|1209393_1209987_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047176.1\|WP_159906203.1\|1211728_1212652_+\|YchF/TatD-family-DNA-exonuclease	unknown	unknown	gnl\|CDD\|238635
NZ_CP047176.1\|WP_159906207.1\|1214637_1216173_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239028
NZ_CP047176.1\|WP_159906213.1\|1220443_1221421_+\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|179535
NZ_CP047176.1\|WP_159906225.1\|1228460_1230110_+\|alpha-amylase	unknown	unknown	gnl\|CDD\|200471
NZ_CP047176.1\|WP_159906223.1\|1227172_1228072_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223472
NZ_CP047176.1\|WP_159906211.1\|1218974_1220447_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184641
NZ_CP047176.1\|WP_159906217.1\|1223552_1224779_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851

Protein	Function_ID	Function_description	E-value
NZ_CP047176.1\|WP_094742810.1\|1218277_1218769_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.50484e-15
NZ_CP047176.1\|WP_159906197.1\|1208426_1209248_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	1.06224e-110
NZ_CP047176.1\|WP_159906209.1\|1216409_1218194_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	1.47998e-157
NZ_CP047176.1\|WP_159906221.1\|1226240_1227173_+\|ABC-transporter-permease-subunit	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	8.27959e-60
NZ_CP047176.1\|WP_159910143.1\|1212687_1213626_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	7.668e-119
NZ_CP047176.1\|WP_159906195.1\|1207273_1208311_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176187	cd05284, arabinose_DH_like, D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	1.17221e-152
NZ_CP047176.1\|WP_159910141.1\|1204596_1205586_-\|putative-sulfate-exporter-family-transporter	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	1.25002e-60
NZ_CP047176.1\|WP_159910142.1\|1205576_1207145_-\|phospholipid-carrier-dependent-glycosyltransferase	gnl\|CDD\|224839	COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones].	1.66189e-24
NZ_CP047176.1\|WP_159906219.1\|1224898_1226182_+\|extracellular-solute-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.62949e-32
NZ_CP047176.1\|WP_159906201.1\|1210095_1211673_+\|methionine--tRNA-ligase	gnl\|CDD\|237012	PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP047176.1\|WP_159906205.1\|1213635_1214571_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|235110	PRK03188, PRK03188, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	4.43767e-135
NZ_CP047176.1\|WP_159906203.1\|1211728_1212652_+\|YchF/TatD-family-DNA-exonuclease	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	3.11331e-94
NZ_CP047176.1\|WP_159906207.1\|1214637_1216173_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239028	cd02110, SO_family_Moco_dimer, Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). .	1.37597e-76
NZ_CP047176.1\|WP_159906213.1\|1220443_1221421_+\|ribose-phosphate-diphosphokinase	gnl\|CDD\|179535	PRK03092, PRK03092, ribose-phosphate diphosphokinase.	0
NZ_CP047176.1\|WP_159906225.1\|1228460_1230110_+\|alpha-amylase	gnl\|CDD\|200471	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Trehalose synthase (EC 5.4.99.16) catalyzes the isomerization of maltose to produce trehalulose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP047176.1\|WP_159906223.1\|1227172_1228072_+\|ABC-transporter-permease-subunit	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.11106e-64
NZ_CP047176.1\|WP_159906211.1\|1218974_1220447_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184641	PRK14352, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NZ_CP047176.1\|WP_159906217.1\|1223552_1224779_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.81685e-33

>NZ_CP047176.1|WP_159906207.1|1214637_1216173_+|molybdopterin-dependent-oxidoreductase
MPPRRAALLAILSGIVAAAVALASAELVAVFTGAGGSPLVAVGGFVIDIVPPGVKDAVISLFGTGDKVVLLVSVGFGVALLAVAAGLLEFRRPPLGVLVLAVVAGLGALAAVTREGAPGLAAAPSVVGMVAGAALLRAAAARLRGWEEEPARGATDRRSFLRLVGIAGAAAVVVGVGARVVTAASAAVTAVREAVKLPAPASTAPPVPASAVLDDIEGITPFRTSNADFYRIDTALSVPSVDPADWSLRITGMVEEEVTITWDELLALPLEEHLVTLSCVSNEVGGDLIGTALWLGYPIRDLLARARPLAGADMVLSRSVDGFTASSPLEVLQDEGRPSIVAVGMNGEPLPVEHGFPARLVVPGLYGYVSATKWVTELKVTTFADDVAYWSTRGWTERGPIKIESRIDVPRQGQAIAAGTVAVAGVAWAPHTGIAAVEVQVDGGAWQPARLAEAVTADTWIQWVYEWEAIAGDHVLVVRATDSEGLVQTSEEAPPAPDGASGHHLRTVTVA
>NZ_CP047176.1|WP_159906205.1|1213635_1214571_+|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MAPRATSTRVHARAPGKINVFLKVGAVRDDGYHELATAFQSLSLYEDVFASEAPDFSVEFSGSIDTADLVTDGSNLAIKAARALARATGYRGGVHLEIEKNVPIAGGMGGGSADAAATLLACDALWGTACTREQLLGIASSLGADVPFSFTGGTAIGVGRGDELSPALAKGRFEWVLVLSEEGLSTPEVYRELDRHRERHLHDFRPISATPSIDPNVLQALRAGDAAMLADAMHNDLQAPALHLQPGLARILELGEGRGALGGLVSGSGPTVAFLAADADAAEDLHRELSGARLRSVRVTGPVHGARIISG
>NZ_CP047176.1|WP_159910143.1|1212687_1213626_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MPRLLGPAEIRDLAQILDVTPTKKLGQNFVHDANTVRRIVKLAGVQAGETVVEIGPGLGSLTLGLLEAGAGVVAVEIDGRLAEQLPRTVELMAPGVELEVLHADAMRVLELPGEPARLVANLPYNISVPVLLHFLEHFASIRSGVVMVQAEVGHRLAAAPGSKVYGGPSVKAAWFGSFTTGGTVSRQVFWPVPNVDSVLVAFERGEEPGDETLRRAVFAVVDAAFAQRRKMLRQSLSGLFGDSAAAIAALEASGVPQTARGEELGVEEFTALGRSLDPSRVPVRGSSAPADSDSDDGDEALPGRDETRSATL
>NZ_CP047176.1|WP_159906203.1|1211728_1212652_+|YchF/TatD-family-DNA-exonuclease
MTDSQHVRARENTSGRDLTYPPLPEALVVPVYDNHTHLEIADGLEPLDYREQLDRASTVGVRGVVQVGTDVETSRWSAEMAASEPRMLAAVAIHPNEAPELDARGELDDALAVIAELATQPRVRAVGETGLDFFRTGESGRAAQYRSFEEHIRIAKETGTALQIHDRDAHREVMDTLRRVGAPERTVFHCFSGDAEMARMCAEEGWYLSFAGNVTFKNAEPLREALAATPRHLILVETDAPFLTPSPFRGRPNAPYLLPHTVRAMAACLETDVGHLAATIASNTEQVYGEWGGEVGSEPTEPVGPLA
>NZ_CP047176.1|WP_159906201.1|1210095_1211673_+|methionine--tRNA-ligase
MSDGASFYLTTPIFYVNDVPHIGHAYTEVAADVLTRWHRQAGDDTWLLTGTDEHGQKILRTATANGTTPKEWADRLVRTAWQPLLETIDIANDDFIRTTDERHEVNVQRFLQKLYDAGAIYTGEYEGYYCVGCEEYKQLSDLEEGTGDYTGQYVCKIHSKPVELLKEKNYFFTMSEYTERLLALYEERPDFIQPESARNEVVSFVRQGLADLSISRSSFDWGVKVPWDDSHVVYVWFDALLNYITAVGYGQDEAEFERRWPATHIVGKDILRFHAVIWPAMLMAAGLEVPRQVFGHGWLLVGGEKMSKSKLTGIAPEQITDTFGSDAFRYYFMRAITFGQDGSFSWEDLSARYQAELANGFGNLASRVIAMLHRYYEGDVPEPGAPSEAEERVRRTVAEAAAAADRSIDALAIHDAITAVWTIVDELNGYITEQEPWALAKAGDRERLGTVLYTASEGLRALAVLLSPVVPRATTLLWEALGVEESLGSLTAQRLREAGEWGRLPVGTTVGTLAPLFPRIEAPVA
>NZ_CP047176.1|WP_159906199.1|1209393_1209987_+|hypothetical-protein
MQRRNRHSLRSIALACAAALGLSIAALGAAAPASAAQGEITYTLHRSATPTADEQDAYSRITAAMDAAVGRYNAGSDITKQIDVYYTPGVPTAEASNNGTLRFGENRSYMVEGTALHEISHTIGVGQNGGWYEHCVNGVWDGAQATAVVRSFDGGGAQLNCGGSHIWPYGLNYSNEFSDAAFTRHVEVVEAMLADGM
>NZ_CP047176.1|WP_159906197.1|1208426_1209248_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MIILAGTPIGNLGDASRRLVEALSTTQHIAAEDTRVTIQLLRALGIENRPTLYALHDHNERERSAELVELARSEDLLVLSDAGMPTVSDPGYHLVETAVAAGVAVTALPGPSAVLMALAVSGLPTDRFSFEGFLPRKHGERVSTFRALVDERRTMVFFESPHRIGDALADLVEVMGPERRVVVCRELTKMFEEVRRGPAAELAEWASGGLRGEICLVVEGAPVREASLEDALLAVLERVAAGARLKEASAEVAEHTGLSRRALYEAALASRRG
>NZ_CP047176.1|WP_159906195.1|1207273_1208311_-|alcohol-dehydrogenase-catalytic-domain-containing-protein
MKAVQYREIGSEPVVVEIDKPVPGPGQVLLRVTAAGLCHSDSFVMGLPEDQYSYGLPLTLGHEGAGVVAELGDGVVGVDVGDSVAVYGPWGCGTCRACAAGRENYCPHAAELGITPPGLGAPGAMAEYVLIDDVRHLVPLGDLDPVESVSLTDAGLTPYHAIRSSASVLVPGSTALVIGSGGLGHVGIQILKAITPARVIVLDLSDEKLALARDVGADEALRSDDPDVLSRIRELTGGEGAQAVFDFVGAEPTLAIARQAVALDGQVQIVGIGGGVLPTGFFSTPMGASVRAPYWGSRTELMEVLDLARAGLVRVHTERFSIDEAPEAYRRLHDGTVRGRAVVVP
>NZ_CP047176.1|WP_159910142.1|1205576_1207145_-|phospholipid-carrier-dependent-glycosyltransferase
MRPDVPRGSWFDDVFGRLTATPARRRIYDLGLPLLVVVLAAFLRLWNLGHPRSLVFDETFYVKDAWTLWNLGFEGAWPEDPDPGFIAGSVDTFTGAPSFVVHPPLGKWIIGLGMGALGADDSVGWRISTAIVGILAVALVIVIAKLLFRSTLIASLAGVFLALDGHAIVMSRVSLLDGILMFVALCGVAAVLLDRRWAELRLAEKVAAGALPSWGPVLWWRPWLLTAGVFFGLAAGVKWTGIYFLGAYGLYAVLVDAMMRRRAGVPFWGSGAVLKQGPVTFLLVVPIALVAYLATWLGWLRTSGGWARQWATEAPGNAWTGALAWVPDWAQSLWHYHVQMYDYSINLRATHPYQASPLTWLLMQRPTSMYFVDQATGVDGCTAARCDEAITSVANPLIWYAGVIALGYLLYRFARYREWRAGFVLMGIVAGYLPWMLYLDRTVFQFYCVVFEPYMMLALALTAGIVLGSPGDERRRRTRGIVIVGVFVLAAAALTAYFYPLWTGQQTSFAFWQAHMWLPSWV
>NZ_CP047176.1|WP_159910141.1|1204596_1205586_-|putative-sulfate-exporter-family-transporter
MGLTLRRLAPGVAVCALAALLASAVHTAVPAVPMLTAAVALGILVAQVPAARPALGRVSPGLKFSSRTLMRTGIVLLGLKLSLVDIAALGWLAILVVVAIVLATFALTYALGRALRLPGREPLLLAAGFSICGASAIGAMAGATRAKEEEQAVPVALVTLCGTLAIAILPALQHPLGLSDLAFGHWVGASVHDVGQVVATAQVAGASALAIAVVVKLTRVVMLAPMVAIAAAVSRRGGDGGGPRPAVVPLFVVGFLAAVLVRSFLPVPQGVLDAADVAQTWLLAAALFALGSAVRLRSLVTTGWRALVVAFASWLAIAAMALAAVHASV
>NZ_CP047176.1|WP_159906209.1|1216409_1218194_+|ATP-binding-cassette-domain-containing-protein
MAHLLGAEALRLEYPTRVIFDDVSLGIEEGDRIGIVGRNGDGKSTLLRLLAQRIDPDSGRVTHRRGVTLGMLDQADTVDEELTVAQAVVGGLEEHEWAGDARTRDVIAGLLRDVPWDGIVGSLSGGQRRRVALAKLLVGDWDVVFLDEPTNHLDVEGIAWLAEHLKRRWAASSGGLAVVTHDRWFLDEICTATWEVHDRIVEPFEGGYAAYILQRVERDRMASTMEAKRQNLMKKELAWLRRGAPARTAKPKFRIDAANQLIEDEPPVRDSVSLSQLAVSRLGKDVVDLLDVTVRYGERTVLNRIEWRIAPGERTGILGVNGAGKSTLLGLVAGTVEPTGGKVKRGTTVRVAILDQQLRELTEVQHQPVREIIAEQRTSYSIGGKEMTPGQLLERLGFSSAQLSTPVKDLSGGQRRRLQLLLILLSEPNVLILDEPTNDLDTDMLAAIEDLLDSWPGTLLVVSHDRYLLERVTDQQYAVMDGAFRHLPGGVEQYLELRRALEKGAPAASSGGAPAAAPGLAGAERRTATKEVSAIDRRLSKLTQLTAQVHEKMATHDQDDYDGILALNATLRSYEDETAELELRWLELSEQLEA
>NZ_CP047176.1|WP_094742810.1|1218277_1218769_-|MarR-family-transcriptional-regulator
MSANDEVDGIVDAWVRERPDLDFTPLQVFSRMRRLAKQLERARGSAFGRSELETWEFDVLSALRRAGAPYRLSPKQLLQATMVTSGTMTNRIDRLVERDLVERLDDPNDGRGVLVQMTPSGLARVDAAITRLVDAEQELLGALTHAQQERLAQLLRKLSLDFG
>NZ_CP047176.1|WP_159906211.1|1218974_1220447_+|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MVDSTLAVVILAAGQGTRMKSRTPKVLHRLAGRPLLGHVLDTASSLDAAHVVTVVRHERERVAEAVLEHSPAALVVDQDEVPGTGRAVELGLAALPDDFVGTVVVLSADVPLLDAPTLRRLVDEHLAAANALTMLSCVLEDPTGFGRIVRGGDGGFASIVEQKDASDAELALTETNAGVYAFDAAALRSVIGAIGTDNAQREKYLTDAAAALKAAGRAIEAVPVQDRWLVAGINDRAQLADAALELNARIVRRWQLEGVTIQDPATTWIDVDAVLAPDVEILPGTQIKGPTVIASGAVIGPDTTLDACEIGEDAVVKRSDATLAVIGARAQVGPFSYLRPGTVLGERGKIGTYVETKNATIGAGSKVPHLSYVGDATIGEESNIGAGSIFANYDGVTKAASIVGSHVRAGSHNVFVAPVRIGDGAYTGAGTVIRKDVPAGALGITVAPQRNMAGWVQTHRQGTASATAAEAALASEPTGTEPATGGSGAQ
>NZ_CP047176.1|WP_159906213.1|1220443_1221421_+|ribose-phosphate-diphosphokinase
MTGITASNKKSLVLVSGRAHPALAEAVAAELGTELVNTEGRTFANGELYVRYGDSVRGGDVFVMQSHTSPINEWLMEQLIMVDALKRASAKRITVVAPFYPYARQDKKGRGREPISARLVADLFKAAGADRIMSVDLHAAQIQGFFDGPVDHLFAMPVLLEHFREKLDPSTLTIVSPDMGRVRVADIWSDKLGVPLAIIHKRRDPKVANQVSVHEIVGEVAGRVCLLVDDLIDTGRTIAKAAEALKNAGAIGVVVAATHAVFSDPACELLSSEFIDSVVVTDTLPLPEEKRWDRLTILPIAPLLARAIHEVFDDGSVTSMFDGDA
>NZ_CP047176.1|WP_159906215.1|1222433_1223546_+|hypothetical-protein
MAVGADETRTGGAARASGEPVWAVGLAGLFLVWAPAALEAGWWLLLGLGIAVAAAALGIVADAGREVRDGPTGEWLGLAGRALASAAVALTAAESVLGATARPVAFLLLLAVTLFVVRGGVLRPRLAVTLGALVGLLLAAAVVVVLLSPPAPASTDLILGGPEGSVTAAAYLLFLVAPPSGGPTSTRRSLVRLAVTGVVAALVGTGLLLLVGPEALAAAATPLRAAVTGTPAAVPVAIAAVLASVLALVVLAGRDASALVRLADEGEIPEPLARRNRRTGAPSAAQLVVCLVSVLAVVILDAEALLAFAVGAALVASIVRRLERGAAGARWPAIAAAAVALLLLLALPSATAAAVAIVLAGLLIVRAFRR
>NZ_CP047176.1|WP_159906217.1|1223552_1224779_-|ROK-family-protein
MSEGTSFSFQRRRNALEVLGQAWSGSPLTASDLIERTGLTRSTVIAVCDDLIELGWIQELENQRAAGDYVKGRPARRYALRRDAGVVVGVDAGQHSVGVFVADLLGETLARRTEHVAHEDVTRRSRLADIERVLDRTLAEAGIADSGVLAITFGVPAPVDALGRSPQGDNDFWGVMNPGLADRFADRGWQAVVDNDANLAALAEGWRGAAVASDDYVALLSGERLGGGVVLGGRLLRGARGLTGEMRYLDLVEGVGSAEGIAALARLWAHEALAVPGHPATLLDHSGAPGAEQVFAAAEAGDALARDIVDRLAERLTNVAATLANLLDVSLIVVGGALAASAGPLLAEVAERLVGRVHAPAPRILPSTLGDQAVALGAVRSGLDRVRADPLALRLPGRALDEVTAAGA
>NZ_CP047176.1|WP_159906219.1|1224898_1226182_+|extracellular-solute-binding-protein
MPLAPPTAGGLSRRALLAAAGAGAAALGLSACASPSASGGVTEITFFQSKPEVIGYFGDVIERFHASQSRIRVVHDFSSNLSAGFVRSNPPDLGCLNYNFEVARFVERGALSDLSDLPEAKRINPAIQPLIEQTASYPDRTSVLPYSLMMAAVLYNRDIFAAQGLEVPTTWTEFLAVCDALTAAGITPIYSTYKDPWTVAQGLFDYSVGGTVDLDSFFTQLKEQGADVGASSPVSFEKDFAAPVDQMLQVAAYSNPNAASRGYGDGNLAFSNGEAAMLLQGPWALSEIAKTAPDLSIGAFPLPMTDDPDDRRVRVNVDLALWIPEASDKKEAAREFLAFLMQPEIIDAYNADNNAFGVTTDAPAVTQPTLVELQEFYDRAAFSLGASQLVPQNIPLQNYLQGIVLGSDPASTLRTIDADWARIAFRS
>NZ_CP047176.1|WP_159906221.1|1226240_1227173_+|ABC-transporter-permease-subunit
MALSTPTRAEARPTEAPRPAAPHRRRPRTDRTFLLYLLPALVLFTLAITLPALMGIFFSFTDSIGFGEWSFIGFTNYVALFSDPAIAASYGFTVLLALVTVLAVNVVAFLLAIALTSQIRGKVALRAVFVLPMVVSGIIIAFVFNFLFSNSLPAFAESIAFTPLASSMLADPNLAWLAIVIVTAWQAVPSALLIYIAGVLSIPGDVYEAASLDGASSWGQLRSITLPLVAGYVVINLVIGFKNFLNSYDIIVGLTDGGPGTSTRSVAMTIFTGFTSGDYAYQMANATIFFLIALVIALVQLRISRGKAAF
>NZ_CP047176.1|WP_159906223.1|1227172_1228072_+|ABC-transporter-permease-subunit
MTSQVPLAPSLPGTRAAVDADARRGSRRTRSSLILTLVLAICALSVIGPLWVTLTMAFKTTAQAVDGNAFSIPLPFSVDGFVQAWNLTDFPRGFAISVLVSAITVGGTIVLSALAAFAISRNWSKRFYRWSFFYLLAAMFLPFPVLALSQVSLTGLVGLDNPIGVAILHVMFQLSFSVMLFTAFLRSLPEELEESARLDGATTNQVFWRLVFPLLAPMSATVGIFAFLASWNDFMMPSLITSDPSLQTLPVLQKIFQTQFSNDYNVAFASYLMAMAPAIIVYLFTQRWVMSGVTQGAIK
>NZ_CP047176.1|WP_159906225.1|1228460_1230110_+|alpha-amylase
MTETVLSRSGTKDDALWWRQAAVYQIYPRSFADANGDGIGDLAGIIQRISYLRELGIDAVWLSPFYPSALADGGYDVADYRDVDPRIGTLAEFDEMTALLHDAGIRVIVDIVPNHSSDLHPWFQEALAAPKGSPERERYVFRDGRGESGELPPSDWESVFGGPAWEAVGDGQWYLHLFAKEQPDWNWDNREIRDDFLETLRFWSDRGVDGFRIDVAHSLVKDLTEPLAASADLVEQRLDGSHPFWDRDAVHEVYAEWRALFDSYDPPRTAVAEAWVDASRRARYASPEGLGQAFNFDLLEADLDADTFRRLISFNLELAAESGSSTTWVLSNHDVVRHATRYGLPSQGGAPVAPAKQWLLSGGEEPALDREKGLRRARAATLLLLALPGSAYLYQGEELGLHEVAGIPDAERQDPTFFRSGGSDVGRDGCRVPLPWESTGTSFGFGPGGAHLPQPAWFADASVAAEELREESTLSLYRRALALRHALQTEEQLEWRDSEEGVLDFARPNGWRSVTNLGGTDAALPAGEILLASGPVDGVLPPDTTVWLH

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Crispr_ID: NZ_CP047176_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047176_3

1528523-1528646

Orphan

Consensus_repeat	Method
ACGGGCTGTGGCGCAGCTTGGTAGCGCACTTGACTGGGGGTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047176_3

>merge|NZ_CP047176|3|1528523-1528646|CRISPRCasFinder
ACGGGCTGTGGCGCAGCTTGGTAGCGCACTTGACTGGGGGTCAGGTGAGTTGGAGCGGCAATATGGCTCGAAAACTAAACAACGGGATGTGGCGCAGCTTGGTAGCGCACTTGACTGGGGGTCA

>NZ_CP047176|3|3|1528523-1528646|CRISPRCasFinder
ACGGGCTGTGGCGCAGCTTGGTAGCGCACTTGACTGGGGGTCA	GGTGAGTTGGAGCGGCAATATGGCTCGAAAACTAAACA
ACGGGATGTGGCGCAGCTTGGTAGCGCACTTGACTGGGGGTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047176.1\|WP_159906746.1\|1526070_1527591_+\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|179525
NZ_CP047176.1\|WP_159906762.1\|1536190_1537258_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378942
NZ_CP047176.1\|WP_159910171.1\|1525298_1526096_+\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|236546
NZ_CP047176.1\|WP_159906754.1\|1530896_1531373_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|239942
NZ_CP047176.1\|WP_159906750.1\|1530095_1530314_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP047176.1\|WP_159906740.1\|1521647_1522472_+\|segregation/condensation-protein-A	unknown	unknown	gnl\|CDD\|224273
NZ_CP047176.1\|WP_159910169.1\|1519759_1520668_+\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NZ_CP047176.1\|WP_159906738.1\|1520776_1521664_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224113
NZ_CP047176.1\|WP_159906760.1\|1535283_1536075_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047176.1\|WP_167305280.1\|1528912_1530103_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|334163
NZ_CP047176.1\|WP_159910170.1\|1524067_1525141_+\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|235824
NZ_CP047176.1\|WP_159906744.1\|1523029_1524025_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP047176.1\|WP_159906758.1\|1533805_1535287_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|225982
NZ_CP047176.1\|WP_159906742.1\|1522461_1523046_+\|SMC-Scp-complex-subunit-ScpB	unknown	unknown	gnl\|CDD\|377219
NZ_CP047176.1\|WP_159906752.1\|1530291_1530885_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379809
NZ_CP047176.1\|WP_159906764.1\|1537261_1538728_-\|PrgI-family-protein	unknown	unknown	unknown
NZ_CP047176.1\|WP_159906736.1\|1519133_1519763_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239516
NZ_CP047176.1\|WP_159906756.1\|1531461_1533249_-\|TraM-recognition-domain-containing-protein	unknown	unknown	gnl\|CDD\|378923
NZ_CP047176.1\|WP_159906748.1\|1527776_1528370_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379534
NZ_CP047176.1\|WP_159910173.1\|1533245_1533806_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047176.1\|WP_159906746.1\|1526070_1527591_+\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|179525	PRK03003, PRK03003, GTP-binding protein Der; Reviewed.	0
NZ_CP047176.1\|WP_159906762.1\|1536190_1537258_+\|hypothetical-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	2.84294e-05
NZ_CP047176.1\|WP_159910171.1\|1525298_1526096_+\|(d)CMP-kinase	gnl\|CDD\|236546	PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed.	1.08934e-58
NZ_CP047176.1\|WP_159906754.1\|1530896_1531373_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	5.14454e-13
NZ_CP047176.1\|WP_159906750.1\|1530095_1530314_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	2.27891e-07
NZ_CP047176.1\|WP_159906740.1\|1521647_1522472_+\|segregation/condensation-protein-A	gnl\|CDD\|224273	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair].	7.4744e-47
NZ_CP047176.1\|WP_159910169.1\|1519759_1520668_+\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	2.72913e-137
NZ_CP047176.1\|WP_159906738.1\|1520776_1521664_+\|AAA-family-ATPase	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	2.1717e-82
NZ_CP047176.1\|WP_167305280.1\|1528912_1530103_-\|site-specific-integrase	gnl\|CDD\|334163	pfam00589, Phage_integrase, Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.	1.03194e-22
NZ_CP047176.1\|WP_159910170.1\|1524067_1525141_+\|prephenate-dehydrogenase	gnl\|CDD\|235824	PRK06545, PRK06545, prephenate dehydrogenase; Validated.	5.76911e-124
NZ_CP047176.1\|WP_159906744.1\|1523029_1524025_+\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	8.19879e-81
NZ_CP047176.1\|WP_159906758.1\|1533805_1535287_-\|ATP-binding-protein	gnl\|CDD\|225982	COG3451, VirB4, Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion].	4.45907e-10
NZ_CP047176.1\|WP_159906742.1\|1522461_1523046_+\|SMC-Scp-complex-subunit-ScpB	gnl\|CDD\|377219	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB. This is a family of prokaryotic proteins that form one of the subunits, ScpB, of the segregation and condensation complex, condensin, that plays a key role in the maintenance of the chromosome. In prokaryotes the complex consists of three proteins, SMC, ScpA (kleisin) and ScpB. ScpB dimerizes and binds to ScpA. As originally predicted, ScpB is structurally a winged-helix at both its N- and C-terminal halves. IN Bacillus subtilis,one Smc dimer is bridged by a single ScpAB to generate asymmetric tripartite rings analogous to eukaryotic SMC complex ring-shaped assemblies.	1.90193e-56
NZ_CP047176.1\|WP_159906752.1\|1530291_1530885_-\|hypothetical-protein	gnl\|CDD\|379809	pfam16259, DUF4913, Domain of unknown function (DUF4913). This family consists of uncharacterized proteins around 150 residues in length and is mainly found in various Arthrobacter species. The function of this family may be functional in enableing the growth of Arthrobacter sp. strain JBH1 with nitroglycerin as the sole source of carbon and nitrogen.	0.00213692
NZ_CP047176.1\|WP_159906736.1\|1519133_1519763_+\|NUDIX-domain-containing-protein	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	8.33084e-45
NZ_CP047176.1\|WP_159906756.1\|1531461_1533249_-\|TraM-recognition-domain-containing-protein	gnl\|CDD\|378923	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG. This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.	7.41267e-31
NZ_CP047176.1\|WP_159906748.1\|1527776_1528370_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|379534	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region. This domain is a tetracycline repressor, domain 2, or C-terminus.	5.37025e-05

>NZ_CP047176.1|WP_159906748.1|1527776_1528370_-|TetR-family-transcriptional-regulator
MDARQKRSQVSLHRAIIDLATAGEVSGLTISDITDRAGVNRSTFYAHASSAAELLCAALNAELDAIRDDYLDTLRGGAATDTTIRQGTARILAHLELHRDLYMRAFDSPGGDSGLRAMLAVHFRAAVIATLETGTLDLPESEVLGTFLADGTASFLAAGSTGLMEEWLRLPAPRSPDTYLAAYRRLLPSWWPFATQG
>NZ_CP047176.1|WP_159906746.1|1526070_1527591_+|ribosome-biogenesis-GTPase-Der
MAQDTRAGDDELNYPDDDLVERLGDLDEQLAASRAQALRSGLQDYDLDDEDLTLLEYAGGDSDEVIYLPALPVVAIVGRPNVGKSALVNRILGRREAVVEDTPGVTRDRVSYKAEWLDRAFTIVDTGGWEPDARGIDASVAMQAEIAIDLADAVIFVVDANVGATATDEHVVKLLRKTKKPVFLAANKVDDARQEPNAASLWSLGLGEPYPVSAVHGRGVADLLDTVLKKLPLESAVAKREIGGPRRVAILGRPNVGKSSLLNKAAGEERVVVNELAGTTRDPVDEQVEIAGKVWRFVDTAGIRRRVHLQQGADFYASLRTSTALEKAEVAVVVIDVSQPISEQDVRIIDLVLESGRALVLAFNKWDLLDDERRRYLEREIEKDLAHVAWAPRVNISARTGRHLEKLVPALELALESWDTRIPTGKFNAFLAELTAAHPHPLRGGKQPRVLFGTQASSRPPTFVLFTTGFLDPGYRRYIQRRLREIYGFEGSPVNVNMRVREKRVR
>NZ_CP047176.1|WP_159910171.1|1525298_1526096_+|(d)CMP-kinase
MTPARRAQQSIPEDGGSAVERTRGTRIDEAADFGAATVVAVDGPAGSGKSSVSREAARRLDFEFLDTGAAYRALAWHGLDIGLDFSDQNAVVDALDGFDYSIGTDPETYSVWVGRTEVTAAIREPRVTAQVSAVAKVPEVRRRITLLFRRIIGETRKAGIIVEGRDITTVVAPTAPVRILLTASEEARMARRSREVTTESAEATGLALRSRDRADSQVVDFMNAAEGVTLLDSTHLDFEQTVDAVIAEVRSSRARADHGTGHTRR
>NZ_CP047176.1|WP_159910170.1|1524067_1525141_+|prephenate-dehydrogenase
MRTTGTVRVVGSGLLGASIGLGLASRGVDVVLDDASPASLSLAIDYGAGRAASAEDEPALIVVCVPPDVVASVVERELAAHPTAVVTDVASVKMQPLRELRARGVDLVRYIGSHPMAGRERGGPVAARGDLFVGRPWVLCRDGETTPEALARVEALALDLGAAIVEMDPEEHDLSVGLVSHVPQVISSLLGQRLLDAPDDALRLAGQGVRDVTRLAASAPELWVQILGANRDHVVSVLDAFRDDVAAVADALRELDAPGARRLLAEHLAAGNAGVARLPGKHGQAQRFSTLIVLIDDLPGTLARLLVEIGEAGVNLEDVRLEHAEGRRVGLAEISVVPEAVGPLTDELTSRGWRIAG
>NZ_CP047176.1|WP_159906744.1|1523029_1524025_+|pseudouridine-synthase
MVNSASSEGERLQKVLAAAGVASRRVVEEMIVARRIRVNGEVAAELGRRIDPAADLIEVDGVAVQLDTSRRYVMLNKPIGVVSSLADENGRPDLRTYTQNFEERLFNVGRLDAETSGLLVLTNDGELAHVLAHPSFGVTKTYIAKVHGQVLPQTIAALTAGIELEDGPIAADKARLLGRPEGRSNASLVEITLHSGRNRIVRRMMAEVGHPVIELVRRQFGPLHLGTLRSGDLRDLTRAELGALLTISRQGGEAPSTSRQASAEEKPRAARPARSDRPARDDRPARDDRPARDDRPARDDRQRARTSSTGGDRRDSPPRRSGVDKQRRPDR
>NZ_CP047176.1|WP_159906742.1|1522461_1523046_+|SMC-Scp-complex-subunit-ScpB
MTADTGAGTVAFEIDRAIEAILMVADEPQSLVALATALSRPIAVVRQSIERLVADFDGETGGVRRGFELREVGGGWRVYVRREYDPVVSDFVLTQNPTKLSQAALETLAVIAYKQPISRGQVAQIRAVNVDSVARTLLGRGLIAEIGNDPETGAILYGTTEQLLVHLGLTSLDELPKISPLLSDGRDGFDGQLG
>NZ_CP047176.1|WP_159906740.1|1521647_1522472_+|segregation/condensation-protein-A
MARSPEVVLEAPPAEGGFRVALSNFEGPFDLLLSLIAKQQVDITEIALSAVTDEFLSYLHGIDTLEGLDRASEFLVVAATLLDLKIAGLLPQGELVDAEDAALLEARDLLFARLLQYRAFKQVSAWIAERMEIETARHVRQVPLEEEFRAKKPELVWTLSAEDFSALAALALAPREIPTVGLDHLHAPLISIREQAAHLVRVLRERTTATFRELIADAGEKGVVVARFIAVLELYRHAAIAFEQPEPLGELTLQWVAESWSDASLAHLGADYDG
>NZ_CP047176.1|WP_159906738.1|1520776_1521664_+|AAA-family-ATPase
MTRKTDDKAELTGLEAPTLGPTGRPLRDFPLPVELTGHGPARIISLCNQKGGVGKTTTTINLGATLAEYGRRVLAIDFDPQGALSAGLGVATYDAITVYDLLLGTVKDPAEAIQSTNVPGLDIIPANIDLSAAEVHLVNEVAREQILARVLRKVSADYDVILIDCQPSLGLLTVNALTASHGVLIPLECEFFALRGVALLIETIDKVRDRLNPVIELDGILPTMYDSRTLHSREVLDRVVDAFGDSVLETVIGRTVKFPDASVSGVPITQFAPEHNAAKAYRKLARELISRGAVA
>NZ_CP047176.1|WP_159910169.1|1519759_1520668_+|site-specific-tyrosine-recombinase-XerD
MTPRACADAFLRQSSVERGLSAHTIAAYRRDLELYLGWLGEQGVDDLATLRRADVGAFASWLAARTERPLAASSRARILSSVRGLHRFALEEGIVADDVAHDVVPPKLPMTLPKAITVEQMAALLDAARGEELADLRDRALLELLYATGARISEAVDLNVDDVFDAEVVRLTGKGSKQRMVPLGRFAREAVDDYLVRARPELSRRGRATPALFLGVRGSRLSRQSAWLVIRAVAGKAGLDREISPHTFRHSFATHLLAGGADVRVVQELLGHASVATTQIYTLVTADSLRDVYTTAHPRARR
>NZ_CP047176.1|WP_159906736.1|1519133_1519763_+|NUDIX-domain-containing-protein
MSEPLADERVEPEILTSERVFDGMVWGVRAETFRYGADVLRREFLDHTGAVAVLAIDERDRVALIKQYRHPVRSREWEIPAGLLDIEGEDALLAAQRELAEETDLQAGRWDLLSEFATSPGGSDEAIRIYLARDLSATDSVFEREAEEADMELRWVDLDEAVDAVLARRVQNPSLTIAVLAAHAFRARGWAGLGDAASPWTRHPRARRG
>NZ_CP047176.1|WP_167305280.1|1528912_1530103_-|site-specific-integrase
MADPRNRRMPPVGVKLTTDVERRVDGYRARVRWTDPSTHKRVGRVSHVRTAEEVEEFFEQMRAATETGTDTTVTLADYAASIGERWQRGLDPTSTAELYDTGLRLRVLPALGHIRVAKITAGMIDRTIDTWETEHSASTIKNSIAPLVRVLDEAVRDDLISINPAKHRARRNLGKNVTQTTGALRQYALPDLQTLQKLAAACGEVHQSYSDHVMLAALLAARGSEVAGLRAGDVDWENRIVWIRRQHYPGRGGLVIKQTKGRRDRPVPMLDALEPILGRLTADKKPDDPLLRGPRGGVLTTATVRDATHWDDLVAKLGFDNLTRHGLRHTGATWMADAGIALHVLQEILGHQSIETTKGYLHPDHRHLAEAARQANQFLSAAPTRRDPIRRDGPHL
>NZ_CP047176.1|WP_159906750.1|1530095_1530314_-|helix-turn-helix-domain-containing-protein
MNVQPRIDDGIGNVETLWCARDVAEFLNVSQATLSRWRRAKVGPPFLQVGGISRYNPSSVRAWVKANEQAHG
>NZ_CP047176.1|WP_159906752.1|1530291_1530885_-|hypothetical-protein
MEDINEAPEFDEPEPRQLNEDDYDKHRLVDTGLIAEPPHPVNWNLLTADEAGAEWIELDQWVHWLRRTYGLPASVIPPFWYRHPELLWELSALHLHWLCAYDPDQNGSAPLGWHRDFADTRQRLRDWVAASGTRLDRDRPTRQTTWPGEEPGPAIDDVVLADRSADFEAFVTADVAKRQAAEDEFYASLDDERPTED
>NZ_CP047176.1|WP_159906754.1|1530896_1531373_-|single-stranded-DNA-binding-protein
MAIRTQQSISGFIASDPQLNYTSKGEARFYARIGQEHFRREADGTFTRLEPTFHDLVAFRATAERAHERFAKGDSFVAEGYVHPYTSERDGQSTDVEEFVAKKIGHDLARTTYEVDRTRRAPTAVEQVAPNREPADRSATEHANARRTSPDNAPAIGL
>NZ_CP047176.1|WP_159906756.1|1531461_1533249_-|TraM-recognition-domain-containing-protein
MNPSQQRQGGSVGDELTNAALIGLVGIFGVALILRAAGSVAAFLSGTPQPASGLASGLAVLANPGDPATALGAHSLSPIVYWGTTVILLASLATAGTWVWVRFRRHTRKVDADPRRLIGTATAHDVTKAASAKALLRRASTLRPSLDRPAPGDVGYRIGTSKGRDVWASVEDSILLIGPPRSGKGLHLVINAILDAPGAVVTTSTRPDNLTATLRARERDGRPIAVFDPQHLAEGIPAGMRWSPIRGCDDPLTAMIRATGLAAATGLSSGGVESGGFWEGKTRTALQALLHAAALDQRPPSELFRWTLDPTAAAEAVAILTNSAQAATGWADSLGAMIDSDPKTRDSIWQGVALALGALADPRVLDAVSPGPGEGFDPETFIRERGTLYLLATGAGAGASAALVAALVEDLIETARRIAARSPGARLDPPLLLALDEIGNLAPLPSLPTLMAEGGGTGITTMPVLQSLAQARDKWSDNAAGAIWDASIVKIILGGASNSRDLQDLSTLIGERDEYTDSVTLGDHGSRSNQRSIRRVPILPPDRIRTLPFGTGVTLLRSAPPIITDLRAWTSRPDSAQLKEERAGIEARLRRPAGS
>NZ_CP047176.1|WP_159910173.1|1533245_1533806_-|hypothetical-protein
MHRKPLRRSTWQEPEQTPIALPRAVVTVTDDGELDVTVDGTAFPPPTDGQAWTRSSFGTLLDAISEARATAVRIEVRETDGSVFTDIIRTRRRITPGPAAPESGKQGGKHATRTRTPELIEVTADGYVPGEDVAVAVIASHTDAAWTGRARTLLDKTHLDPVLRDGTGEVVLLGRISGTVHVRRLP
>NZ_CP047176.1|WP_159906758.1|1533805_1535287_-|ATP-binding-protein
MNEREQLHTSVLVAPASERRRLRKQRRQAAAHLQAEQRRTEIAEVKAKAEAERAERRATAYLPAAGEPGPAALRSPGRFRLPRHQDTSATLAGAYPFVAEGGLGADGVFVGQDLYSGGSFVYDPWVLYARGIITAPNVVLAGIVGSGKSSLAKSLYTRSIPFGRRVYVPGDPKGEHTAVAEAVGGRAIVLGHGLNTRLNPLDEGHRPSGLSNEQWAITVASRRRDLIGSLAETVLARGLTPLEHTAIDLALTQTVRENTVPILPMVVDRILRPTADVDDRLADDGRLAGHALRRLVAGDLAGLFDGPSTVTFDPSLPMISLDLSRVTENSTLISVLMTCSSAWMESALLDPNGGQRWVIYDEAWRLMSHPALLRRMDAHWRLARHYGIANMLIFHKLSDLDNVGDAGSAMRSLANSLLANAETRIVYRQESDQLGPTAQALGLTGTEQKLLPSLGVGQGLWRIKDRAFVTQHQLHPAELELFDTSSRLTQGVK
>NZ_CP047176.1|WP_159906760.1|1535283_1536075_-|hypothetical-protein
MPTFNDPLADAADASEALRGLAHASRTFDNPADTYAVFGDVISGVRSLRQVLDQLADAHLTHRERAHDDSGNHAAGAESALTSADELHQAGTLLDQVHDRLDAAFGHSGKIAWHPEPALEGAPLSEPAARRWVSVVFLQGEDADGVLDLIDRDGTDAAIEHLKRFDYGDETTSAAMENGYVYEEPPAGPLDRVVADGDYILTSNGAMGHVSLLRALPVPPDPPLAGSSATHRREATRTSPVADRDWFAGPAGGTASVGRELSL
>NZ_CP047176.1|WP_159906762.1|1536190_1537258_+|hypothetical-protein
MSASQYRGQLERKRKQRIEAEKKAGEYRTKESKKRAEAAKARQSASKTKSETTAKSKLREADRKDQEAETAGKEAGRLQSKAAGYSKEESALLTKLTRAEQSEADAAERRRKREQQQADRRTAADRATLESRISGTESAVDQVLRQLPSPKPEKLRVLILGASSEGDLRVGREQKRIRAAVESALHRDQIELDVRPAATTHDLLDGITKFRPHVVHFSGHSNEDLIVFEDERDAPHTGVIVTARAFANAIRATDEPPLLVLLNSCKSAAQIDDLVDQVVPFAIGMADSIDDADAINYAAQFYAAIANGQSVNSAHLAGQVRLELDGLDSADLPTLAWAADVDPTTTILVRPTDPA
>NZ_CP047176.1|WP_159906764.1|1537261_1538728_-|PrgI-family-protein
MTTKNERAMSSELVPVKFSRLTRRGVLLGLSLSQLITLATGILSIVGALYAGGGILLAYTAPVWVLAAALTWTPIAGRPAVEWLPVAFWWLWRSTGGQLLYRRRVVTPRPVGTLALPGDTARLREYTDPDTNAGMIHDPHQQTLTVVCEVSHPAFVLLDPGEQERRVTSWGRVLATVCRSGRIATLQVLERTLPDSGTGLAEWWASHGISNDSWAATTYAELIDRAGPAGERHATTLSLSLDMKAAARQIRTAGGGIRGGAAVLRQEMSTLVAALRSADLTPSRWLTPGQIAVILRGAYDPAIAATLERHGELGQNLATAGPVAVNESWTRLRTDSAHHTTLWISEWPRSMVYPGFLSPVLLSTGIKRSFSLICTPMRSDQAARDIRKKKVEHISDAAQRAKIGQIEDAALTAEYQDVLQQEADLTAGHGVLRYTGLISVSAPTVDELEAAVAAIEQAAIQASCETRPLVGQQAAAFTAAALPLCRTV

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Crispr_ID: NZ_CP047176_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047176_4

3350713-3350856

Orphan

Consensus_repeat	Method
TTCGGCTCGCAGAAACCCGTTCGGCTCGCAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047176_4

>merge|NZ_CP047176|4|3350713-3350856|CRISPRCasFinder
TCCGGCTCGCAGAATCACGTTCGGCTCGCAGAAACCCGTTCGGCTCGCAGAATCCCGCGATTCCGACGAGCCGAAGCAGATTCGACGAGCCCGAGCCACTCCGGAGGCACCTTCGGCTCGCAGAAACCCGCTCGGCTCGCAGAA

>NZ_CP047176|4|4|3350713-3350856|CRISPRCasFinder
TCCGGCTCGCAGAATCACGTTCGGCTCGCAGAA	ACCCGTTCGGCTCGCAGAATCCCGCGATTCCGACGAGCCGAAGCAGATTCGACGAGCCCGAGCCACTCCGGAGGCACC
TTCGGCTCGCAGAAACCCGCTCGGCTCGCAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047176.1\|WP_159910339.1\|3351042_3352209_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP047176.1\|WP_159910338.1\|3341710_3343450_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP047176.1\|WP_159909599.1\|3349642_3350680_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224525
NZ_CP047176.1\|WP_159909606.1\|3360908_3362654_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|235758
NZ_CP047176.1\|WP_159909603.1\|3358437_3359112_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP047176.1\|WP_159909594.1\|3344730_3345540_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|379468
NZ_CP047176.1\|WP_159910340.1\|3357414_3358290_-\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|225057
NZ_CP047176.1\|WP_159909593.1\|3343633_3344734_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP047176.1\|WP_159909597.1\|3347972_3348890_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223472
NZ_CP047176.1\|WP_159909595.1\|3345664_3346957_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP047176.1\|WP_159909600.1\|3352205_3353399_+\|DUF993-family-protein	unknown	unknown	gnl\|CDD\|368783
NZ_CP047176.1\|WP_159909602.1\|3355850_3357236_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367829
NZ_CP047176.1\|WP_159909592.1\|3336585_3341463_-\|DUF1080-domain-containing-protein	unknown	unknown	gnl\|CDD\|366896
NZ_CP047176.1\|WP_159909598.1\|3348886_3349525_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047176.1\|WP_159909605.1\|3359842_3360832_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP047176.1\|WP_159909601.1\|3353395_3354232_+\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|224007
NZ_CP047176.1\|WP_159909591.1\|3335865_3336444_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP047176.1\|WP_159909604.1\|3359090_3359825_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047176.1\|WP_159909596.1\|3346986_3347976_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224096
NZ_CP047176.1\|WP_159909607.1\|3363043_3364747_-\|TIGR04141-family-sporadically-distributed-protein	unknown	unknown	gnl\|CDD\|275009

Protein	Function_ID	Function_description	E-value
NZ_CP047176.1\|WP_159910339.1\|3351042_3352209_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	3.08007e-47
NZ_CP047176.1\|WP_159910338.1\|3341710_3343450_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	5.5929e-137
NZ_CP047176.1\|WP_159909599.1\|3349642_3350680_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.59434e-90
NZ_CP047176.1\|WP_159909606.1\|3360908_3362654_+\|FAD-binding-protein	gnl\|CDD\|235758	PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	8.92371e-176
NZ_CP047176.1\|WP_159909603.1\|3358437_3359112_+\|hypothetical-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	0.0074301
NZ_CP047176.1\|WP_159909594.1\|3344730_3345540_+\|oxidoreductase	gnl\|CDD\|379468	pfam14100, PmoA, Methane oxygenase PmoA. This family is a putative methane oxygenase.	3.11924e-49
NZ_CP047176.1\|WP_159910340.1\|3357414_3358290_-\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|225057	COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only].	1.16244e-23
NZ_CP047176.1\|WP_159909597.1\|3347972_3348890_+\|ABC-transporter-permease-subunit	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	6.67458e-86
NZ_CP047176.1\|WP_159909593.1\|3343633_3344734_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.66521e-54
NZ_CP047176.1\|WP_159909595.1\|3345664_3346957_+\|extracellular-solute-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.45807e-40
NZ_CP047176.1\|WP_159909596.1\|3346986_3347976_+\|ABC-transporter-permease-subunit	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	5.76605e-76
NZ_CP047176.1\|WP_159909600.1\|3352205_3353399_+\|DUF993-family-protein	gnl\|CDD\|368783	pfam06187, DUF993, Protein of unknown function (DUF993). This family consists of several hypothetical bacterial proteins of unknown function.	0
NZ_CP047176.1\|WP_159909602.1\|3355850_3357236_+\|hypothetical-protein	gnl\|CDD\|367829	pfam04122, CW_binding_2, Putative cell wall binding repeat 2. This repeat is found in multiple tandem copies in proteins including amidase enhancers and adhesins.	2.82064e-11
NZ_CP047176.1\|WP_159909592.1\|3336585_3341463_-\|DUF1080-domain-containing-protein	gnl\|CDD\|366896	pfam02057, Glyco_hydro_59, Glycosyl hydrolase family 59.	3.10222e-72
NZ_CP047176.1\|WP_159909607.1\|3363043_3364747_-\|TIGR04141-family-sporadically-distributed-protein	gnl\|CDD\|275009	TIGR04141, conserved_hypothetical_protein, sporadically distributed protein, TIGR04141 family. This model describes a sporadically distributed conserved hypothetical protein in which complete members average over 500 amino acids in length, although matching sequences frequently are truncated or broken into tandem ORFs. Regular co-clustering with known markers of mobility (integrases, transposases, phage proteins, restriction enzymes, etc.) suggests this family also is part of the mobilome. The function is unknown.	2.25089e-78
NZ_CP047176.1\|WP_159909605.1\|3359842_3360832_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.57561e-46
NZ_CP047176.1\|WP_159909601.1\|3353395_3354232_+\|TIM-barrel-protein	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	5.47751e-32
NZ_CP047176.1\|WP_159909591.1\|3335865_3336444_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.8128e-07

>NZ_CP047176.1|WP_159909599.1|3349642_3350680_+|substrate-binding-domain-containing-protein
MAQKDRTAAVTLHDVARESGVSLATASRALNGSARKVNDAYRARVIEAATRLGYSTNLSAQAVAKGTTSTVALLVSDIADPYFSSIASGVLAAAEAAGLVVTIGVTHRDPQRELELVRTLRGGRPRVMLLAGSRFDDESSRDALVAELEAFERSGGRVVMLSQRSLPFPTVQLDNRAGARALAVELVALGYRRFAIVHGPATLLTSADRVQGFADGLAEHGVSVDPALVVETAFTRDGGHAATLRLLDEHADDIDLVFAVNDVMAIGASSALRERGVEPGAGIGVAGFDDIPTLRDVSPAITTVAVPLTEIGRRAIAMALDEGADGDSSVVLPTAVVVRESTPGR
>NZ_CP047176.1|WP_159909598.1|3348886_3349525_+|hypothetical-protein
MSTSRARRAARDARAAAADGTALRWPGAANKFALFAEVLFTGVLVTVLALPLVTLPLALAVGARHLRRFVLDEPSTLGAALAEARAGLLRSLPIGLGLVVASAALALDLALVAGGALPGAAAVGVVCAALLATGLVVLLTACAAWQPDSRWVPLLQEAAVRSVRDLRGSGAVLVALVLAAVVTWQLAPLIVPALGCTVFAAVAVRFSRTPVE
>NZ_CP047176.1|WP_159909597.1|3347972_3348890_+|ABC-transporter-permease-subunit
MTTFDTTLPSADTQVLTEPAPRPRAKRKRPTTATLLWIAAMIVLTAIVLYPLVWMGAAAFKPNSEFGGQTSLLPQNPTIDNFVKVFAGVGGVPLWQFFLNSTVLAIGSVIGVVISSSMAAYAFARLDFRGRPLYFALMIGTLLLPMHVLLIPQYTIFRTLGMMDTYWPLLIGKFLATEAFFVFLMVQFIRNLPRELDEAARIDGAGHVRIFGSITIPLIRPALITSSIFAFIWSWNDFLGPLLYLNTPDKQPLPLALRVYNDQTSASDYGATIAVSVLALLPVLIFFIVFQRFLVDGVATQGLKG
>NZ_CP047176.1|WP_159909596.1|3346986_3347976_+|ABC-transporter-permease-subunit
MTTTSTPSGTAASGRVAPTPGRTSTPRPAGGEARRRPRRDTLAGYAFLSPWLIGFVGLTLGPMLMSLYFAFTDYNLFTSPEWVGLANFERLLGDPKFIQSVQLTLAYVFIGTPVKLAAALVVAMLLNYSAKGTGFFRSAFYAPSLIGASVSIAIVWRAMFSTGGPVDSGLQIFGIEIGGWVGVPALILPMMIILAVWQFGAPMVIFLAGLKQVPAELYEAAMMDGAGPWRKFRSVTLPMLSPVIFFNLLLEMINAFQVFASAYIIGNGTGGPAGATNFYTVYLYTRAFTNNQMGYASAMAWVLLLFVGLLAFVLFKTQKSWVHYSGDTK
>NZ_CP047176.1|WP_159909595.1|3345664_3346957_+|extracellular-solute-binding-protein
MFRTHSTRVAAVALMASAALALTACSGGGSGASATLDPDEEITLNYTFWGNDDRAARYDQAIALFEEEHPNITINSTFTDYGGYWEKRQTEAAGGGLPDVMQFDYTYLRQYGDNGLLGDLSEYFGGAVDESTISEDLLATGVLDGATYAIPTGYSAWAIFQNQDLLTANGLEPYAGGGSWDDYAAYVADVTAKTGGSVYGGTDYTGRIQNFELQLRAEGKELFTEDGELAFTEDDLASFWEQGDEMRTTTGVPAARLQELLPKSGFGAGIATSEMSWSNFLGGYIGDSGASEIVMTAPPTADEGSKDLYQKVGLMQAISSSTEHPEAAATFLDFLINSPDVGEIFGATLGIPASSEQLAGANLEGADKQVSDYLDSVEDRIGEAPAAPVAGYGAIEANFLDLGTSLGLGAVSVDEAVTQFFDETAVTLDN
>NZ_CP047176.1|WP_159909594.1|3344730_3345540_+|oxidoreductase
MIDGIAQLVTDDPATPPRDSPRPYLHPLRTPGGVVVSDLRPPDHDWHLGLSLTVANVSIGDEPQDANFWGGVTWVAGEGYRRLDNNGSQRVLEQTGGALHLGWFDAGGRLLLREQRRHEVHRPAAGVAVLGIESEWTPEVPGLRFGSPTTAGRPDAGYGGLFLRLAPSFAEARVLTPRGETTADAARGADAPWVALATGAATVAIAASATNPVAPSPFFVRTDPTPMLCAAPFFHRAWPLDAPARWSWRVLVADGRLTSDELTTLLPVF
>NZ_CP047176.1|WP_159909593.1|3343633_3344734_+|Gfo/Idh/MocA-family-oxidoreductase
MDADTLPPLRVGIIGTGGVAHLHAAALTGRDDTRIVAAIDTDAERARLFAAQYGIPASGTSFADLPEVDVLHLCTPPGVHAEQAEAAFALGAHVVVEKPPALSLAEVDRMLAAAARADRRLAVVFQQRTGTAAAHVRGLLRSGALGRPLVARCDTLWYRDDDYFAVPWRGRWDTEGGGTTFGHGIHQLDLLAHLLGDVDEVTGQAWRLGREIETEDVSTAVLRFASGAVASVLTSALSPRQSSSIRIDTERATVELEHLYGHGHAHWRLTPAPHVDPAEAAGWAFPADEVASGHQPYLDAVYAALRTGAPLPDVADAPTRSLEIVEALYLSTQRGGAVRIEELREDPGLRSAVRADVVDLRPEARA
>NZ_CP047176.1|WP_159910338.1|3341710_3343450_-|ATP-binding-cassette-domain-containing-protein
MRIDRHRPARSSLRLLGRYRKRIGVAVLFFAVKDTPLWLLPVVTGAIVDVVVAGGPSSTLWLWTAIALVALLQNYPNHVMYTRLYMSSVRQTGKDLRNALAARLQNLSIGFHTRASASIVQTKVVRDVENIETMLQQVAHPLLSAVMVAIGALVMTALNVPGFLPVYALAIPLAVLLRAFLTKRSRRGNELFRREVEQFSARVGEMATLIPITRAHGLESTAVDRVAAGAEGVRSAGYSLDLLNGRFASLSWVGLQLLGVACLVAAAWASISGWVPITAGQVVLLSSYFALLTGAVTNLLMLLPIIARGTESVRSIGELLEDPDLEHNEGKARVDELRGAIRLDRVGYRYDGEVVAIDDVSLDVQPGETVAFVGSSGSGKSTMLNLVLGFLRPTSGRILLDGRDAESLDLRSVRRFVSVVPQDSVLFEGSIRENVAYGLGAVGDERITAALRDANALDFVDALPEGWDTVVGERGARLSGGQRQRIAIARALVRDPRVLVLDEATSALDPESEALVREALERLMRGRTTLVVAHRLSTIRSADRIVVLEHGSVVEVGSHAELLAARGRYATLHAVQAGS
>NZ_CP047176.1|WP_159909592.1|3336585_3341463_-|DUF1080-domain-containing-protein
MLTRSSRRDPDRSSSRRRGGWGSRLVAASALGVLLATGLTPGAQAAPTDVQAVTVTAADVAAAAESVNALTFKGFGILSANSTSALLLDYKSQHPEKYWELVETLFGGEHPIMTTIKIEMGNDRNTSTGPNASTMRSRDEYPNVLREPGFQLAADAQSVAEGDVHVSILRWSRPTWVTSDADQYVWFKNTVLAAYREYGVMVDSINPDTNETTAPSAALYKTFSAWLRTDTKGYEGATAGDPNSGFATPEEGDLYRAIRTVAADTVGTPPTSFGDQLNSATDSSLRDAVDIVGFHYATSDDANGNLKKFARTYDREIWNSEGQATFSNSADRPNNTNADGQGGTGTEFGGTNSALEMSNWVTSGFAKSLRTLNIFQPAIGSFYDGFQYSSKELVSARDPWSGWLYYDGGLAAVEQYTQFAQLGWENEDNTAGVWRGIPQASGNALGGGNPPSGASTGAVSYTTLAAPDASDFSTVIVNDSPYTKTYAITADGLALGADRTMEVWETRAADAGEAYDANYVVPVAELAADANGTYTVTVKPWSTATATTLDHATAGAGGALTARDGYGSTLPTSPEYTDADGGRDVLDTDASGDVNGVTTDSVLYADDFDYTEAADIRSYDPATGALGDSGESFLASRGAAEKPAGTPSVQPEDDGAIPRYTNDTNGAFESVATADPARDRVLRQQVGPGMAGSAWNSGDPKTTIGDYRWANYRASVDVLFEDGAGRYATIGAREQGGTANGQNVSAAELKVDANGAWSLLRYGTAVASGTASATPATAFKSGTGVWNRIAVQVAGDRYTAYLNGVEVAAYTDPTPQAAGRVQLGSAFTFTQFDDLTIEPVAGYTPYYTSVVDGMHQTSWSDSSTPVLVFDEQWTHVNGQGMFEWQRTASKSTGKGAALTYSFTGTGLDVLGSNTGAATLDVTVDGVRLASGAPTWAAGSERTAFTLRGLADGAHTVVLETANDGVLNIDAVAVVTANADSSAVDTTALEAALATAEEYEEAEWSPQSWAPFASIVSAASSAVADPAAFGLDAEGAAAQTARLAKAASQLVPQGVSSDVRDLGLVSVTASAGLPATLTVDGVDQAVTWDAGAAQALAATAELGSVVVTGRTTQKVASSGVFQRFTVKMLVTPADLRYFIDSGSSGSAAGSAHAAVKAAQPGILNGAADQKWDGVAAGSTWGYSTTSTGAVVPGSPADWSSSYVPADFNRPVVTHLTLPAGTYDIVSVQAPRAGLTTNLASTVTVAGVSKRVTAVSTGAATPIRQQVTLSAPGVVDVAFGTDGTSGYNARLALVYVQSVTRDLGFQGALTTDAPLPATVTVDGAATAVTWDADSAAQTRSLYAPVTVRGTLANGAAVSARYEIVPEGLVYYIDSGTAATSSPQYGAVKASFPSLLNATSDQASTGAGQWGFLADGMKVKSGTDVNDKYSTGLYQDTTQLIYRLPLAAGTYTLTGGFTEWWGLSRTMNHTVSVDGRELVKGNVPLSGTSTPLAADLTFTLAQAGTVEYRVTNEGAGGEKPVLSWLAVAASAPAIPDLDVAVQSRCVAGKVQLGVTATNTADVPVAITMTTPYGAKSFASVAPGANAFHSFTTRAKSVPADAVDLSVTAVLDGESVSREQSEEYPAASC
>NZ_CP047176.1|WP_159909591.1|3335865_3336444_-|helix-turn-helix-domain-containing-protein
MASAAPLLRAARRSRHLTQDQLAQRTGLDQARVSRSESDHESPRFDTVDRLLAGAGHRLYAAPTRRDDAATVAVRIRVSLERGDRLAAMRHLIQLNDDLLAEKGLVRGVLAVTAPESTGQKVWDAAIAALASWRLGQEGVPLPEWVAEPSRTLSRSRVLRIDPADPVPGAADVPEAFLQHGVLVWRDTFASV
>NZ_CP047176.1|WP_159910339.1|3351042_3352209_+|Gfo/Idh/MocA-family-oxidoreductase
MNGVSGRMGYRQHLVRSILAIREQGGVLLSDGTRVQVEPLLVGRSEAKLAELAAKHGLEHWTTDLDAALADPAWPIYADFLVTKARVPAIKKAIAAGKDIYTEKPTAESYAEALEIAEAAKAAGIKNGVVHDKLYLPGLQKLKRLIDSGFFGRILSVRGEFGYWVFEGDWQDAQRPSWNYRSEDGGGIIVDMFPHWNYVLENLFGPIEGVYAKATIHIHTRVDEQGEPYTATADDAAYAIFDVAGGITVQLNSSWAVRVDRPELVEFQVDGTLGSAVVGLFGAKVQPRVATPKPTWNPDLPETHDYSGDWQELPVNDVFENGFKTQWEQFIRHVVEDAPHEYDFFAGARGVRLAELGLESSRDGRRIDVAALDAAADAEALASVEVVK
>NZ_CP047176.1|WP_159909600.1|3352205_3353399_+|DUF993-family-protein
MTDVTLLSTDATLSAFELGGAPAFVRPRAPLASRVAYAAAHVVPLVHGENVPGHPAQVDWDATLAFRHHVWSWGLGVADAMDTAQRNMGMDWSATQELIRRSAAEAASVNASVVVGINTDQLTDEVVPLQGVIDAYLEQLAFAEDAGAGVVMMASRHLARAATSAADYERVYAAVLSRASRPVVLHWLGEAFDSVLAGYFGSSDVAEASETVIRIIEAHLPSVSGIKMSLLDAEAEIAVRARLPLGATLYTGDDFNYVGLIEGGTDADGVTRHSDALLGAFAAVAPNASAAIQALDAGDVESYRRILGPTEALSRQVFAAPTQYYKTGVAFLSWLNGHQQAFSMVGGLHSARSLPHLSEIVRLASEAGALERPELAAARWTQLLALSGVDALRTVLV
>NZ_CP047176.1|WP_159909601.1|3353395_3354232_+|TIM-barrel-protein
MTHPRLSLNQATIKYAPLATALDVTAAAGYSSIGLWREPVAEVGLAEAVRLVADSGLRVSSLCRGGFFTLAEGPERRAALDDNRRAIDEAAALGAPALVLVAGGLPAGSRDLVGARSRVQDALVELAPAAVAAGVQLAIEPLHPMFASDRAVVSTLKQALDLAAPFDPAAVGVVVDTFHVWWDPEVLPQIIRAGAEKRIASYQVCDWATPLASDVLLSRHYVGDGVIDFTVLTEAVVAAGYTGDIEVEIFNQAVWDAEYAAVATRVAADFAERVAPHL
>NZ_CP047176.1|WP_159909602.1|3355850_3357236_+|hypothetical-protein
MNLRRITLGLCSIALGALLAAGITADPASAEVAPPGTISGTVTAPADVPGEHRYYIAAWDLGSTEFGFAQAAAGTELVLGRGETATYTLKEDPESGNYFGEGTWKVRVLASPVAGGTPEIGDEYWKDADRFSTATNATVPAGRGLTGVDFSPSAYAFTSTRIAGDDRYGTSVASTQVFAPGIPVLYIASGEKWADALSAGPAATHQYGALLLTDPDALPSAVALEIKRLAPVRTIVVGSDLTVSDAVYEEIDAIVGEITRVGGTDRYDTSRKVISGAYRFSSSHFYEVHLATGNNFPDALSIAGASARIGGPVLLVDGAEQGLDDKTRDILTQMHPYHAYVLGETPSISAGIEDDLVSSGLVDSAERIGGRDRYETSRLINEEWPAWQLEDTTYLATGEDFADALSGATAAAFEHSSVSLSRPDCVPAATVASLKSASIDTVKVLGSERTLSRTAGSITPC
>NZ_CP047176.1|WP_159910340.1|3357414_3358290_-|Rieske-2Fe-2S-domain-containing-protein
MREMKFVKLVTRLEDAAALDPLVGRVRTVVNRVIRPQPVRDVLHGVPVGHPVHPLLVLIPAGAWLSAAVLDLLPGNERASRALIGVGVVSVLPTAAAGYTDWSELHEQQMRVGLVHAGANVIATALYAASFVQRGRGHRVSGKVLSMVGLAVVSGGGYLGGHLSYRQAAGVNHAEDVPHRFPTGWQLVGPLEDLPERKSVKKDVAGMPLLVFRRGDRVNVLSNVCSHLSGPLDDGEVTEEGGEACVACPWHSSVFSLETGEVLRGPATSPQPRFETRITEGRVEVLLPNAG
>NZ_CP047176.1|WP_159909603.1|3358437_3359112_+|hypothetical-protein
MDGFVTTDEAARRLGVSPRRVVDMLTTAQLTGEKVHRSWLVSAAAVGERERLNHAPGRPISAVTARALVSALSDGDRLTSRQEAIIRRRTAEQLVAAVSRSVRVERFATRRPELAADNMHPTGESAIARLSARAGEGLVGQAKRLHGYPRGMTYDELVDHAMLVRDDETGGITLHRFVDEIFPWSETPAALIAIDSARDGQARVRRAGLDAVERLRNSWLADRT
>NZ_CP047176.1|WP_159909604.1|3359090_3359825_+|hypothetical-protein
MAGRSHVVEAPRDSPWPLVFELAAATPPGSWMLVGGLMVHLHALRAGVDAIRPTSDVDVLLDISSNSVLDVAGPLTSLGFSARTPSQGTPLHRFVRDDRDVVDVMVSRDVRTRTRWQRIPLLRSPGAAQALMRRDVYTLTSGGDSAAVDVPDELGAIIAKSAAYSIDSRDPHRHLDDLAVLAAAAGTPRVLALDSLTRKDRSHLRRVLPRLSDDQHPSWRVLDQYDRALGQRVWRAISAACSPG
>NZ_CP047176.1|WP_159909605.1|3359842_3360832_-|LysR-family-transcriptional-regulator
MNFEQLTGFVEVARLSSFTRAAEELHLAQPSLSRQIASLEQDLGSELFHRARTGSTLTPAGELLLPLARRMLADAESVRRELAELAGLERGRVRFGATPTLCISLVAEVLHAFHAAHPAIELHLAEDGSRSLFDRLARGELDLALVTTSTAAFGGAFTVTPLLVEELVVVSSAAEPPLTDGDALDLAAVARLPQIVFNSSYDLRRTTDAAFSSAGLVPDVVLEGAEMDAVLRFAERGLGIAVVPAMVLQGRPGLRSIRIEEPDGPRLTRTISLARPADLAPTAAVRVMQRTIAATARAFAAQAGGTMRVAEGTSPADGGVARGQAAVDR
>NZ_CP047176.1|WP_159909606.1|3360908_3362654_+|FAD-binding-protein
MSTSAPTTERRISTSVLVIGTGGSGLRAAIELAEAGVDVLALGKRSKSDAHTSLAAGGINAALATMDPDDSWQQHAADTITESYLLANPHTVEIVTKNAARGIQDLERYGMPFAREDDGRISQRFFGAHTYRRTAFAGDYTGLEIQRTLVNRAAQLEIPILDTVYVTRILVNEDGAVFGAYGFDLVDGTRYLIHADAVILAAGGHNRIWRRTSSRRDENTGDSFRLAVEAGGRLRDPELVQFHPSGIIEPENAAGTLISEAARGEGGILRNGLGERFMGKYDPERLELSTRDRVALACYTEIKEGRGTPNGGVWLDVSHLPRETIMTRLPRVYQTMLELQMLDITKDPIEIAPTAHYSMGGVWVRSDDHSTNVPGLYAIGEASSGLHGANRLGGNSLIELLVFGRIVGQAAAEYSSSLTAQTRSAASVQVARDEIAHLLAADGEENVRALQRAIRNTMTEHAGVVRDEAGLLAGLAELDAIEARIADIGIHPDIAGFQDLAHAFDLKSAAMAARATLEAALERRESRGCHNRSDYPDIDPALQVNLVWSPRTGITREEIPAVPEEIQALIGEVETAGKLLE
>NZ_CP047176.1|WP_159909607.1|3363043_3364747_-|TIGR04141-family-sporadically-distributed-protein
MQSKYRKKDGFTSVRVEVGSRSGLLISGKTEGKDVSWAPVLRGLTSEQIDLSNVTAAAVLIIPVAKKSKIPAVEKIAQKVAFVETNTGQVPSTDAPDEDNVDLTLNDEKRLEPEAAWVLTYGMGFQLLDQDRVDTGFGQRIAIRSANPKDLNSVTRVTLDERSRVERSTIPAGAHLRGFGLGDLGELVTRLVASAKIPGLSSGDKVIKVRGADALSIPLSKNPATLLKDLKVIEKLQDKPPASRELGFLEQLALVKDQELITLLDGLLLQAIGEPENPLLALSWPHEKIDENGTPSSFKLMGFGRSEPQDDVPTLPSILTPIRAVSTNERQQQLERTAVMLFRDSDGKDPISPRIPARRWLAFQAEVDDRRFNLHDGKWYAMEKSYAEQVKERTAEIFELGPGVSKIPNWPASASDEASYNTLLAQELGGVCLDRKLMRSDFHKHGIEACDVLLEDGTFIHVKNIESSSPASHLLAQALVSTEVLTFDKVAQQDFRKKVKKAGWDPKKYSGRPKRVVLVVARRGATITPDSLFTFTQVNLSRQVAQLGAQGVEVFIAPIERASAEQK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

837362 : 845011

Streptococcus_phage(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159905779.1\|837362_838298_+	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	4.2e-83	53.9
WP_159910110.1\|838294_838909_+	serine O-acetyltransferase	A0A191KBJ5	Streptococcus_virus	2.7e-06	27.8
WP_159905780.1\|838905_840372_-	deoxyribodipyrimidine photo-lyase	A0A1V0S949	Catovirus	4.4e-47	29.1
WP_159910111.1\|840450_840831_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_159905781.1\|841187_841895_+	WYL domain-containing protein	A0A1B0RXM1	Streptococcus_phage	9.1e-06	25.5
WP_159905782.1\|841971_842346_+	VOC family protein	NA	NA	NA	NA
WP_159905783.1\|842713_843421_-	winged helix family transcriptional regulator	W8CYM9	Bacillus_phage	6.1e-10	40.4
WP_159905784.1\|843845_844481_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_159910112.1\|844579_845011_+\|tRNA	tRNA-specific adenosine deaminase	S4VYT2	Pandoravirus	7.7e-08	40.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047176

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection