CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047184	Rathayibacter sp. VKM Ac-2801 plasmid unnamed, complete sequence	0 crisprs	csa3	0	0	5	0
NZ_CP047183	Rathayibacter sp. VKM Ac-2801 chromosome, complete genome	6 crisprs	csa3,cas3,DEDDh,WYL	0	2	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 8735

Mycobacterium_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104268929.1\|226_430_-	hypothetical protein	NA	NA	NA	NA
WP_056865924.1\|1177_1723_+	hypothetical protein	NA	NA	NA	NA
WP_056865923.1\|1874_2384_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_159917243.1\|2380_3091_+	hypothetical protein	NA	NA	NA	NA
WP_159917245.1\|3159_3618_+	OsmC family peroxiredoxin	NA	NA	NA	NA
WP_055794434.1\|3684_4254_-	uracil-DNA glycosylase	NA	NA	NA	NA
WP_043278972.1\|4269_5430_-	TDT family transporter	NA	NA	NA	NA
WP_020624524.1\|5499_6405_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_056045796.1\|6845_7268_-	hypothetical protein	NA	NA	NA	NA
WP_159424188.1\|7337_8735_-	ParB/RepB/Spo0J family partition protein	S5YZ97	Mycobacterium_phage	2.0e-57	36.7

DBSCAN-SWA_2

13549 : 16232

Cronobacter_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104353510.1\|13549_14845_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	1.0e-71	39.4
WP_104277457.1\|14834_15284_-	translesion error-prone DNA polymerase V autoproteolytic subunit	F1C5A6	Cronobacter_phage	8.5e-26	50.0
WP_104277458.1\|15473_16232_+	ParA family protein	A0A2H4JGZ2	uncultured_Caudovirales_phage	6.3e-05	58.1

DBSCAN-SWA_3

20734 : 21874

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159424211.1\|20734_21874_+	hypothetical protein	V5UQR9	Mycobacterium_phage	1.9e-13	39.3

DBSCAN-SWA_4

37201 : 41639

Aeromonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104305026.1\|37201_37822_-	recombinase family protein	A0A219Y9V9	Aeromonas_phage	1.3e-24	39.4
WP_159917259.1\|38034_38427_-	low molecular weight phosphatase family protein	NA	NA	NA	NA
WP_159917261.1\|38423_39809_-	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	4.7e-06	27.9
WP_159917283.1\|39826_40582_-	aquaporin family protein	NA	NA	NA	NA
WP_159917263.1\|40619_41288_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_055794488.1\|41288_41639_-	helix-turn-helix transcriptional regulator	A0A218MNF3	uncultured_virus	1.4e-07	40.0

DBSCAN-SWA_5

45915 : 50499

Aeromonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159917273.1\|45915_46512_+	recombinase family protein	A0A219YB42	Aeromonas_phage	1.0e-34	46.7
WP_159917275.1\|46708_47332_-	hypothetical protein	NA	NA	NA	NA
WP_159917285.1\|47448_48153_+	SOS response-associated peptidase	V9IQW7	Stenotrophomonas_phage	7.3e-32	41.0
WP_159917277.1\|48157_48733_+	hypothetical protein	NA	NA	NA	NA
WP_104277726.1\|48786_49035_+	hypothetical protein	NA	NA	NA	NA
WP_159917279.1\|49157_49316_+	hypothetical protein	NA	NA	NA	NA
WP_104282270.1\|49320_49530_-	hypothetical protein	NA	NA	NA	NA
WP_104305048.1\|49540_50272_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_104268997.1\|50268_50499_-	glutaredoxin-like protein NrdH	A0A218MND6	uncultured_virus	4.0e-11	45.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP047183

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047183_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047183_1

85829-85956

Orphan

Consensus_repeat	Method
TCGGGTGTCGAGTGCGACAACTTCTGGACAGTGGCGAGCGGCGGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047183_1

>merge|NZ_CP047183|1|85829-85956|CRISPRCasFinder
TCGGGTGTCGAGTGCGACAACTTCTGGACAGTGGCGAGCGGCGGACGGTCGTCCTGTCGACTCTCCAGGAGTTGTCGCATTCGGGTGTCGAGTGCGACCACTTCTGGACAGTGGCGAGCGGCGGACGG

>NZ_CP047183|1|1|85829-85956|CRISPRCasFinder
TCGGGTGTCGAGTGCGACAACTTCTGGACAGTGGCGAGCGGCGGACGG	TCGTCCTGTCGACTCTCCAGGAGTTGTCGCAT
TCGGGTGTCGAGTGCGACCACTTCTGGACAGTGGCGAGCGGCGGACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047183.1\|WP_159911759.1\|95874_96831_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|224137
NZ_CP047183.1\|WP_104238959.1\|89889_90996_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380628
NZ_CP047183.1\|WP_159911761.1\|96842_97649_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340838
NZ_CP047183.1\|WP_159916722.1\|76687_77881_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380502
NZ_CP047183.1\|WP_159911747.1\|80475_85743_+\|cellulase-family-glycosylhydrolase	unknown	unknown	gnl\|CDD\|226217
NZ_CP047183.1\|WP_159911749.1\|86789_87536_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235816
NZ_CP047183.1\|WP_159911755.1\|88771_89818_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP047183.1\|WP_104222625.1\|72743_73181_-\|SseB-family-protein	unknown	unknown	gnl\|CDD\|377787
NZ_CP047183.1\|WP_104282778.1\|85982_86612_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP047183.1\|WP_159911757.1\|91159_92158_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224525
NZ_CP047183.1\|WP_159911745.1\|79278_80175_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381324
NZ_CP047183.1\|WP_159911735.1\|71986_72682_-\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|319798
NZ_CP047183.1\|WP_159911739.1\|74680_75379_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|184875
NZ_CP047183.1\|WP_159911741.1\|75477_76689_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340951
NZ_CP047183.1\|WP_159911763.1\|98055_98730_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047183.1\|WP_104222623.1\|73944_74640_-\|endonuclease-NucS	unknown	unknown	gnl\|CDD\|235114
NZ_CP047183.1\|WP_159911753.1\|87977_88775_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP047183.1\|WP_159911751.1\|87687_87981_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP047183.1\|WP_159911743.1\|77924_79226_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240541
NZ_CP047183.1\|WP_159911737.1\|73399_73825_+\|Lsr2-family-protein	unknown	unknown	gnl\|CDD\|378714

Protein	Function_ID	Function_description	E-value
NZ_CP047183.1\|WP_159911759.1\|95874_96831_-\|glycosyltransferase	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	2.39685e-42
NZ_CP047183.1\|WP_104238959.1\|89889_90996_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380628	cd19973, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate-binding protein. Periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2) receptors such as LsrB and LuxP which are highly homologous to periplasmic pentose/hexose sugar-binding proteins.	1.1422e-116
NZ_CP047183.1\|WP_159911761.1\|96842_97649_-\|glycosyltransferase	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	4.07722e-58
NZ_CP047183.1\|WP_159916722.1\|76687_77881_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|380502	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group belongs to the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.	1.59894e-74
NZ_CP047183.1\|WP_159911747.1\|80475_85743_+\|cellulase-family-glycosylhydrolase	gnl\|CDD\|226217	COG3693, XynA, Beta-1,4-xylanase [Carbohydrate transport and metabolism].	1.36183e-09
NZ_CP047183.1\|WP_159911749.1\|86789_87536_-\|SDR-family-oxidoreductase	gnl\|CDD\|235816	PRK06500, PRK06500, SDR family oxidoreductase.	3.26334e-69
NZ_CP047183.1\|WP_159911755.1\|88771_89818_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	7.33433e-83
NZ_CP047183.1\|WP_104222625.1\|72743_73181_-\|SseB-family-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	2.62709e-10
NZ_CP047183.1\|WP_104282778.1\|85982_86612_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.01338e-06
NZ_CP047183.1\|WP_159911757.1\|91159_92158_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.70586e-96
NZ_CP047183.1\|WP_159911745.1\|79278_80175_+\|aldo/keto-reductase	gnl\|CDD\|381324	cd19098, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein. This family includes a group of uncharacterized AKR superfamily proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance in both health and industrial applications.	4.88179e-126
NZ_CP047183.1\|WP_159911735.1\|71986_72682_-\|HAD-hydrolase-like-protein	gnl\|CDD\|319798	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065. 5'-nucleotidases dephosphorylate nucleoside 5'-monophosphates to nucleosides and inorganic phosphate. Purified Pseudomonas aeruginosa PA0065 displayed high activity toward 5'-UMP and 5'-IMP, significant activity against 5'-XMP and 5'-TMP, and low activity against 5'-CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.76657e-90
NZ_CP047183.1\|WP_159911739.1\|74680_75379_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|184875	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional.	6.75526e-11
NZ_CP047183.1\|WP_159911741.1\|75477_76689_-\|MFS-transporter	gnl\|CDD\|340951	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters. The gene encoding Sinorhizobium meliloti membrane protein MosC is part of the mos locus, which encodes the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine. MosC belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.35013e-65
NZ_CP047183.1\|WP_104222623.1\|73944_74640_-\|endonuclease-NucS	gnl\|CDD\|235114	PRK03298, PRK03298, endonuclease NucS.	5.68083e-169
NZ_CP047183.1\|WP_159911753.1\|87977_88775_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	2.45821e-104
NZ_CP047183.1\|WP_159911751.1\|87687_87981_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	1.87077e-18
NZ_CP047183.1\|WP_159911743.1\|77924_79226_-\|MATE-family-efflux-transporter	gnl\|CDD\|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.72177e-95
NZ_CP047183.1\|WP_159911737.1\|73399_73825_+\|Lsr2-family-protein	gnl\|CDD\|378714	pfam11774, Lsr2, Lsr2. Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organisation and also function as a pleiotropic regulator of gene expression.	4.71322e-46

>NZ_CP047183.1|WP_159911747.1|80475_85743_+|cellulase-family-glycosylhydrolase
MSRARTVLLVTAALVAGLLTAPSAAAAATPATTPVTGFESGSPALATVTGTASTAASDDSTEGDSSLEVSYDVTGGLAELGFDPLQAPVLPAPASALTVDLRGDGSYNTVYLRVRDTSGETFVHRVDAMRSTQWQTLTVDLTAEPAARDGGDGNGVMDAPLTVAGVLVVRNGEQPPTGTFALDDVRADTTGWTLPVAASTYVAAGASAALSFDAGAAGDWELRLADAAGLSRTLTGTAGAAGPVAVDWDGLDDSGAAMSGDVRAVLRQDGSADGSLGAATTTGVPFLLTLAAADDPDATSVVEAFDGGDAGWGVATGSATLRRASAAEAKGGATSTEGTDALAVDYDLTEGMAGITRTAPLDVATGPVTGLKVDLKGDGSYNTVYLRVTDASGEAFTYRMDAMRQTTWTSVPIDLTQDPVLAEGGNADSVLDMPLTLTGFFVVRNGEQSATGSLVLDNLRAVSSRWTMPVADTEFLVPSEGAVVSLAFSAATAGDWMIVLRDGTGRSRSLTGTLAEPGEAAVQWDGKADDGQEMDGPIRSTFLQDSSPDGQFSASRTRSATPTLLTVAAAQPSTTSVVEGFEGAASGWSVAMGSAAISRTSAQKTQGSYAQRIDYDVSSGLVETVQSTPATVIAKPATSLRIDLKGDGTYNTVYTRLRDASGETFTYRLDAMRSTAWATIDVDLTAPAALIEGGDGDQVLDFPVKLSGVIIVRNGSQPATGTVVLDNLRTLASGWSLPAAANAFFTPAASATTSFSFTAAGPGDYRLELRDKEGRLKTITGRAAAAGPVTLPWDGSDDSGTRLRGDVSGVFSQDGTDDGALASNATRSGIPLLLTLAEIDADASLAQSFDSAGTDWVQAAGTATPSTSATRTEGSGALKIAYDLSRADAEIETTTTPVPLLTQPATALKVDLLGDSSWNTVFLKLRDATGEMFFYRVDAMSLSRWTTATIDLRSPAANTHLGNDDGVLDYPVSLVRVNVVRNGASAPATGTVVLDNLRVLDKDWTLPTASAARFSRENAATTTVRFTAGGPGDYALVLLDSAGRTRTFGGTAAAAGEITTTYDGTDDSGAAMSGSIAGRLTWDTTADGALSGAATATRPYLTGVSARVTEASPASISGINSFLTEQDSPAEADRQAALLEDAQVRWAREEFEWKRIEPRKGYYDWAKFDQAVAISQARNVDMIGKLAYSAPWASSAPAGTAAEDAQYYPPRSNADFASYAAATVARYKDRVHVWEVWNEPNTDYYWRGGATAGQYGEMLKAAYTAIKAVDPTATVLVGGLDQFSDPFMAGVLAAGAGDSFDGLAIHTYTVDGAPETGAIPTYLDAAQNFLTRSAPGRSLWITEVSWATCTTCTGATSEADQASYLSRSYLDAAARGIKAIAWYNLVGGPDPQAPLDTFAVTERSGRQKPAYAALKEVGAVLATGTAVGRASATASASPVKVDDLSSTSGWAVAPIGGGTASLAATSAGYSGSGALKLTYDFSGTSKGAQLHTSRTLPGSPTAVSVWVSGDASTSPVYLKLQDATGETFQGLVGNVGGTPWQKMTLFSDGLNANYTHSGGDGDGVWDYPVKLVDAFVYKAMSGITSGTVSIDDVTADYGVNLHGTVLQTPTETVQALYTAGPSTASVQVSGATASVRTTAGSTALTVADGHATATLGRTPAFVVSAPAVTRPGGTTTLDWMTGDGATTSVAVLTASGGVAKQLTSSIRYLAGRQTLAWDGRLTNGAVAPAGSYSMRITTTTLDGRTSVQKVAFTQP
>NZ_CP047183.1|WP_159911745.1|79278_80175_+|aldo/keto-reductase
MQRFGIGLAAVGRPAYITAGRDGDLGPASERSVDALRERTHLLLDAAWDAGVRFLDAARSYGRAEEFLGGWLARHPERRAALTIESKWGYEYVGGWAMDAPVHERKEHSVAMLDRQWPLTLDALGSAPDSYLVHSITPESPALADRPLLDRLRGLAGSGVRVGLSTSGPEQARVIELARAIPESPFSAVQSTWNPLEQSAGRALAAAHDDGWLVVVKEALANGRLVEHPIEHAGAAPDAVALGVALAQPWADVVLSGAATPEQLRANLRARPRELAELSALAVDPARYWAERAALDWT
>NZ_CP047183.1|WP_159911743.1|77924_79226_-|MATE-family-efflux-transporter
MTSALDRSILRLAVPALGSLVAEPLFLLTDSALVGHLGAVPLAGLALGGTVLQTIVGLMVFLAYSTTPRVGRALGEGDERRAVAAGIDGGWLALLLGAGIAVVGALTAPAVVALFGAEPAVAEAGVRYLSVSMAGIPAMLGVFALTGLLRGFQDTRTPLVIAAGGFGLNAALNAVLIYPAGLGITGSALGTVIAQWAMLAAYAGVALRLARRVGAPLRPHLAGLASSAGSGGWMLLRTASLRAAILLAVATATSLGAEELGAFQVAMTLFSTVAFALDAVAIAAQALLGRLLGAGDAEQARAVTKRCVTWGIGAGVVLGALVTGLSGVLPYVFSSDQEVLRLLPAAIAVVGLTAPLGGYVFVLDGVLIGAGDGRYLALSGLANLAAFVPLALLAPTAPAEWRLLALWLAFAVGFLGARAVTLGLRVRSDVWLR
>NZ_CP047183.1|WP_159916722.1|76687_77881_+|substrate-binding-domain-containing-protein
MAVLLVRAGSGHRIERHGRIDSKRAGLSYPEPRGRSTDDERAAPTRRNVEPRKSPRPTLARVASRAGVSPSTASLVFSGSGPVSEATKERVLRAASELDYAGPDPRARSLRRGRSGIVGVVVDERMLHAFRDPIKIAMLDGIADVLGGVDAGILLLTETGDGAGLLATAPVDAMILVGCSPSVDDSVAVLRRRGVPVVVVEGLSELGGAVISLDNREASRTLAEHLRELGHERVAVVSLPFAKDRRRGAIPAGWRASPSITPVDRLLGVQDVFPEASVVAAAASSVDEGVAAGRTLLEGAERPTAVVAQSDLLAAGVILAAEERGLRVPEDLSVVGFDGVQVPGLAAEYDLTTMAQPAVEKGRAAGRAAVALLADEEAEAVCFHAVFHRGNTSAPPR
>NZ_CP047183.1|WP_159911741.1|75477_76689_-|MFS-transporter
MTSTSALTRPQLVAWRNAVFTIFVLSGISIATWVSRTPAIRDELQLSTAGVGLLILSMSIGAIVGLAFSTPVMGAIGARRGMALGLAVSAAGLAVLGVSADVIGVLPAAFAGMAMLGFGNGAVDVMMNVEGAANEKAFGRTLLPLFHAFFSLGTVAGALIGAGASALAVPVAVHLGAIAVVIAVTAVIAIRFVPVREELDTSGAATTVKPPVRERVAASLGVWRDGRLVLIGLIMLGMAFAEGSANDWLTLAMVDGHGTDKTTAAVVFGVFVAAMTVGRVIGGPVLDRFGRVPVLRASAGLAIVGILLFVLAPVDALVVVGAIAWGLGCSLGFPVGMSAAAEGPHSAARVSAVAMLGYVAFLVGPPAIGFLGEHYGLLNALFLVLALVVVAGLASPAARSRRS
>NZ_CP047183.1|WP_159911739.1|74680_75379_-|alpha/beta-fold-hydrolase
MRYRARDGALLHVDEHGAGQGRPMVVVPGEPERHPSYLGSFASIACTRRVLVLHPRGVGGSAELPPAPPATTAADVEDLRRHLGVDELDLAAHDSGCRAVLLAAVDAPERIAHLLLIAPGTAWLGIDDRAPSPQAEHAARAGSDDTAAIRDALQRLDCPAVVLGGEDDPVTGVAALEALTALLPQASLAVIESSGHHPWAEAPAEFAVALRASLSVPPAAPPLGRRPPAAAR
>NZ_CP047183.1|WP_104222623.1|73944_74640_-|endonuclease-NucS
MRLVIARCSVDYTGRLSAHLPLATRLLLVKADGSVLIHSDGGSYKPLNWMSPPCTLITGEPDEEARAAGVTQQWTVAHRKTGDALVVSIHEVLHDSAHELGVDPGLVKDGVESHLQRLLAEQIGLLGEGHTLVRREYMTAIGPVDILARDSSGAAVAVEIKRRGEIDGVEQLTRYLELMNRDPHLFPVTGVFAAQEIKPQARTLAEDRGIRCVVLDYEAMRGTDDSHTRLF
>NZ_CP047183.1|WP_159911737.1|73399_73825_+|Lsr2-family-protein
MTQSIVKGGNVSPGPGRDSPVPRTPGGKVAQKITLVDDIDGTPIDSGDGGTVRFSIEGANYEIDLGPDNIAELHSALEKFVSSARRVGSRPAAATSVATASKSDPKQLKAIREWANANGHPVSDRGRIPSEVQAAYQAAHK
>NZ_CP047183.1|WP_104222625.1|72743_73181_-|SseB-family-protein
MARRGGPPARPARPGPYRNAEAREALEALVAAPTAEAVDRLLEACLDGSLVVDVTGSQPGGVPHVRTVATTTGEQVLPLFTSTDEVRTAVPRQQHPRVQMLVLPGREAFALIRTADFVAVQLDPGSIAQVVTRSFVERALDAERP
>NZ_CP047183.1|WP_159911735.1|71986_72682_-|HAD-hydrolase-like-protein
MSDTTLAATGLDARAGTWSCILFDLDGTITDSAPGITGTLVETFVELGRPVPAPAELLAYVGPPLLEAFRELGGMTVEEAQAALVVYRRRYNAGGLFDSSVYPGLPEVLSRIAEAGVPLSLATSKPESAATRILEHYGLAQYFTVICGASEDEVRSAKADVVEEALRRLRGLGVDLSAPVMVGDREHDVQGAAAHGVPTIMVEWGYGSPLEAVGTIALVSGAEELADLLLP
>NZ_CP047183.1|WP_104282778.1|85982_86612_-|TetR/AcrR-family-transcriptional-regulator
MPRPRTFDEADVVARARTAFAETGYAGTSLDTLLEATGLARQSLYNAFGGKKELFMRAFLSDTAEAVDAVETIRHGTESPLARIRSQLVRVAVEHGAAQSAPSLFTRTAVELSARDPEIAATVATAFDAMRSHYAACIDDARTAGEIDASADPEALGAYFCAVLEGMALLGASGAPRATLLGIGLTSLAAVPITELGRERLGTGEGDWS
>NZ_CP047183.1|WP_159911749.1|86789_87536_-|SDR-family-oxidoreductase
MDAALSGRTALVTGGTSGIGLAVVRRFVQEGAHVFVTGRRQEQLDAVTEELGDAVTVVRADAAEPDGARAVFDAVAARRSGLDAVHANAGGGGFKDLADVTADDIDTAFATNVRGTALTVQGALPHLTDRAAIVVTGSTAGSGTEKSFGLYGASKAAVATMTRTWAAELAPRGVRINTVVPGPTETPGLAALALGDPSALLEQIASGMPLGRLLRPEEIAATVLFLVSDQSSGITGAEILVDGGASIA
>NZ_CP047183.1|WP_159911751.1|87687_87981_-|antibiotic-biosynthesis-monooxygenase
MSARILYAEFTAKPGHEETVAGMIADLAVLVRREPGNIEFTPHRREDDPARFFVYEVYRDEDAFQAHISADYGAEFNRELGPLIVEPHSQLTWLVPV
>NZ_CP047183.1|WP_159911753.1|87977_88775_-|ATP-binding-cassette-domain-containing-protein
MTLIDAAGTAPAATRTPVLQAKRLVKTFGRVVGLDGVSLELYPGEVLAIIGDNGAGKSTLIKCLTGAEIPDEGEILLDGQPVTFKRPQDARGAGIETVYQNLAVSPALDVASNLYLGREKRKKGILGSVFRMLDTAGMRKEARAELTELGISTLQDVTVPVENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRNLRDRGIPVILISHNMPHVFDVADRIHIQRLGKKAATITPQSHSMTDAVAIMTGAATA
>NZ_CP047183.1|WP_159911755.1|88771_89818_-|ABC-transporter-permease
MAQKTTDPNPPTSALDLASEFLDRRTPLDRVRGVLHRYPAVSPAVVLVLAVIVFGLLNDRFLDPSNLSLITQQVAVVGTLAVAQTLIILTAGIDLSVGAVMVLTSMVIAQTATENGLPAIVALLLGLVVGLAAGAFNGLLVTKLRLPPFIVTLGTLNIFVALTLLYSSGSTVRGTDMPALLPSTGGTFDILGVRISYGVLLMLLVYIVIAFILGKTAWGRHVYAVGDDKEAARLAGISVNRVLMSVYLAAGAILAIGAWIQIGRTNAASPNAGADLNLDSITAVVIGGTSLFGGRGTVWGTLLGALIVGVFRNGLSLAGLDVLYQTLAVGVLIIVAVSVDQWIRKVRK
>NZ_CP047183.1|WP_104238959.1|89889_90996_-|sugar-ABC-transporter-substrate-binding-protein
MTNRSPRLTRYIGLGSVAILAALGMTACSSSGPGSSDAGSTAGSGDGVGVTLIVKTTTNPFFVAMEDGAKEAATSAGVNLTLAAGKEDGDEDTQIQAIENAISKGDKGILITPNGPSVVDAIQKARDAGLFVIALDTAPDPADAVDITFATDNFKAGEAIGEWTAAQLDGKKATIAMLDLFDDKVVSVDYNRDQGFLTGMGIDVADDQTNGDEAKTGSYSGGDYEIVGNEATQGAEDGGRTAMETLLSKNPDVNVVYTINEPAAYGAYQALQAAGKEKDVLLVSIDGGCAGVKNVKEGLIGATAQQYPVKMAQLGVEAIAQLAEDGTKPSTSEGLDFFDTGSQLVTDTPVDGLDSITSDDAAGICWGE
>NZ_CP047183.1|WP_159911757.1|91159_92158_+|substrate-binding-domain-containing-protein
MKHVAALAGVGIKTVSRVINGEPNVSAATIERVQAAASQLQYQPDLHAGNLRRSNGRTNTLGLLVGSVANPFSGALHRAVEDLANERGVAVFASSLDDDPARERSSVNAFVSRRVDGLILTTVAPSQAYLGVEVDRGTPAVFVDRVPSGITADAVITDNAAGIARAVGHLASFGHRRIAFLGDRPEIFTAQERERGFLEEMSRLGLPVPPGYVRHGAHDEHAAEEMATALLDLEVPPTAIVGGQNLITIGVLAALRRRGAHGRIALIGFDDIPLAELLEPAVSVIAQNPAVIGRTAAERVFLRLDGEDEPAQTFVIPTELIARGSGEVPCPD
>NZ_CP047183.1|WP_159911759.1|95874_96831_-|glycosyltransferase
MSIVIVTYNSIGVIRSCLDALAGRDESVEILVVDNLSRDETVAVLRAEYPDVHVVENTENAGFSRAVNLGAAHATGRHLLLLNPDAQISAEVVGSLASLLDSDPTIGAVSPLLENEGEDVVIVAAGHAPTVRRMLLHQTGLSRLGRRFPSLEGHYLFAADLHGRPRDVDWVSGGCLMIPLAVWDRVGGLTDRWFMYAEDVEICLRLRAEGLRVVLDPSLHALHAMGGSSSDVDGRVSTAWIVNLFDLYGWRMARSDLQQQVWRAVVLAGMASRMLVYRLSGLRPGRAAASAAQLRRYGIYMRALRAAPLTRDREPFGT
>NZ_CP047183.1|WP_159911761.1|96842_97649_-|glycosyltransferase
MTHNFTPLLGRSAVFIHDFLFLTNPEWFTRRERAYFSLMPLTVRRADVVIASSVAESHRIVRTSAAPSAVPVGLGLNRAFADAEPMAPSGVDGLDGFLLAVGRLNARKNLATTIEAALAAQVLSPSFPLLVVGEASGVPTEFPPAVRAALDDGSVRLLGRIETEELRWLYENAALFLFLTLDEGFGLPTLEALACRTPILASDIPVFREILGEHARLVDPRDVRAIAAAIRELVADPPEPLDPAPVLEYYSWDAVVARLRAAMVAVLP
>NZ_CP047183.1|WP_159911763.1|98055_98730_+|hypothetical-protein
MRARRRTALVRWAVAALGAVVVLDAVVVAQTQVGSDATADFLSSVTALTNILSVVSFAIAGRSAWRSARSGGRRSAAAHGESRAVTAMRTLNAATLLSMSGLFLVIYGPAVLGDPAQLNPGTVVLHVLVPALALIELLAVPGARPVDLRLVWAVMVFPVLWFVYTFVRGALTSRYVYEFLDPELSGGERIIVGMTVLILSIFFLMGVAILSLQRWRTAVRSPLV

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Crispr_ID: NZ_CP047183_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047183_2

327891-328003

Orphan

Consensus_repeat	Method
TGCCGCCCGGCTCCGCTCGCGAGATGCCACTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047183_2

>merge|NZ_CP047183|2|327891-328003|CRISPRCasFinder
TGCCGCCCGGCTCCGCTCGCGAGATGCCACTTCGGTACGCCTCGCCCGGCGTGTCGCGTACTCAACTGGCATCTCGCGGAATGCCGCCCGGCTCCGCTCGCGAGATGCCACTT

>NZ_CP047183|2|2|327891-328003|CRISPRCasFinder
TGCCGCCCGGCTCCGCTCGCGAGATGCCACTT	CGGTACGCCTCGCCCGGCGTGTCGCGTACTCAACTGGCATCTCGCGGAA
TGCCGCCCGGCTCCGCTCGCGAGATGCCACTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047183.1\|WP_159912120.1\|332581_333583_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224525
NZ_CP047183.1\|WP_159912098.1\|315905_316820_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|366120
NZ_CP047183.1\|WP_159912126.1\|336630_336834_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047183.1\|WP_159912122.1\|333584_334604_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
NZ_CP047183.1\|WP_159912128.1\|337204_338401_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|226363
NZ_CP047183.1\|WP_159912112.1\|327282_327879_+\|sugar-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
NZ_CP047183.1\|WP_159912102.1\|318708_320880_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238020
NZ_CP047183.1\|WP_104225080.1\|332146_332572_-\|RbsD-or-FucU-transport	unknown	unknown	gnl\|CDD\|377444
NZ_CP047183.1\|WP_159912106.1\|322284_323514_+\|ornithine--oxo-acid-transaminase	unknown	unknown	gnl\|CDD\|179736
NZ_CP047183.1\|WP_159912116.1\|329759_330641_+\|SMP-30/gluconolactonase/LRE-family-protein	unknown	unknown	gnl\|CDD\|369882
NZ_CP047183.1\|WP_159912114.1\|328074_329514_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP047183.1\|WP_159912130.1\|338517_338913_-\|cation-transport-regulator-ChaB	unknown	unknown	gnl\|CDD\|377614
NZ_CP047183.1\|WP_159912124.1\|334984_336634_-\|trehalose-synthase	unknown	unknown	gnl\|CDD\|200473
NZ_CP047183.1\|WP_159912108.1\|323611_324238_-\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238496
NZ_CP047183.1\|WP_159912100.1\|316854_318516_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380277
NZ_CP047183.1\|WP_159912096.1\|315369_315681_+\|biopolymer-transporter-Tol	unknown	unknown	unknown
NZ_CP047183.1\|WP_159912104.1\|321320_322157_+\|N-dimethylarginine-dimethylaminohydrolase	unknown	unknown	gnl\|CDD\|224747
NZ_CP047183.1\|WP_159916769.1\|325077_326988_+\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|372624
NZ_CP047183.1\|WP_159912110.1\|324234_324780_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047183.1\|WP_159912118.1\|330658_331990_-\|DUF21-domain-containing-protein	unknown	unknown	gnl\|CDD\|224173

Protein	Function_ID	Function_description	E-value
NZ_CP047183.1\|WP_159912120.1\|332581_333583_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.78419e-90
NZ_CP047183.1\|WP_159912098.1\|315905_316820_-\|ROK-family-protein	gnl\|CDD\|366120	pfam00480, ROK, ROK family.	1.03041e-46
NZ_CP047183.1\|WP_159912106.1\|322284_323514_+\|ornithine--oxo-acid-transaminase	gnl\|CDD\|179736	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.	0
NZ_CP047183.1\|WP_159912124.1\|334984_336634_-\|trehalose-synthase	gnl\|CDD\|200473	cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in Trehalose synthetase. Trehalose synthetase (TreS) catalyzes the reversible interconversion of trehalose and maltose. The enzyme catalyzes the reaction in both directions, but the preferred substrate is maltose. Glucose is formed as a by-product of this reaction. It is believed that the catalytic mechanism may involve the cutting of the incoming disaccharide and transfer of a glucose to an enzyme-bound glucose. This enzyme also catalyzes production of a glucosamine disaccharide from maltose and glucosamine. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP047183.1\|WP_159912128.1\|337204_338401_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|226363	COG3844, COG3844, Kynureninase [Amino acid transport and metabolism].	5.84529e-108
NZ_CP047183.1\|WP_159912130.1\|338517_338913_-\|cation-transport-regulator-ChaB	gnl\|CDD\|377614	pfam06150, ChaB, ChaB. This family of proteins contain a conserved 60 residue region. This protein is known as ChaB in E. coli and is found next to ChaA which is a cation transporter protein. ChaB may be regulate ChaA function in some way.	4.41281e-16
NZ_CP047183.1\|WP_159912102.1\|318708_320880_-\|hypothetical-protein	gnl\|CDD\|238020	cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.	4.0683e-10
NZ_CP047183.1\|WP_104225080.1\|332146_332572_-\|RbsD-or-FucU-transport	gnl\|CDD\|377444	pfam05025, RbsD_FucU, RbsD / FucU transport protein family. The Escherichia coli high-affinity ribose-transport system consists of six proteins encoded by the rbs operon (rbsD, rbsA, rbsC, rbsB, rbsK and rbsR). Of the six components, RbsD is the only one whose function is unknown although it is thought that it somehow plays a critical role in PtsG-mediated ribose transport. This family also includes FucU a protein from the fucose biosynthesis operon that is presumably also involved in fucose transport by similarity to RbsD.	7.59398e-37
NZ_CP047183.1\|WP_159912112.1\|327282_327879_+\|sugar-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	5.72849e-96
NZ_CP047183.1\|WP_159912116.1\|329759_330641_+\|SMP-30/gluconolactonase/LRE-family-protein	gnl\|CDD\|369882	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region. This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE.	1.71942e-56
NZ_CP047183.1\|WP_159912114.1\|328074_329514_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.17654e-40
NZ_CP047183.1\|WP_159912108.1\|323611_324238_-\|isochorismatase-family-protein	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	2.46222e-38
NZ_CP047183.1\|WP_159912100.1\|316854_318516_-\|hypothetical-protein	gnl\|CDD\|380277	NF033435, S-layer_Clost, S-layer protein SlpA. In Clostridiodes difficile, the S-layer protein precursor, SlpA, is one member of a large paralogous family of protein that share several cell wall-binding repeats. SlpA is cleaved into a larger and smaller protein. The S-layer protein itself is important to adhesion, and portions of it are highly variable, and then N-terminal and C-terminal are well-conserved.	9.77069e-15
NZ_CP047183.1\|WP_159912104.1\|321320_322157_+\|N-dimethylarginine-dimethylaminohydrolase	gnl\|CDD\|224747	COG1834, COG1834, N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism].	1.52837e-68
NZ_CP047183.1\|WP_159916769.1\|325077_326988_+\|amino-acid-transporter	gnl\|CDD\|372624	pfam13520, AA_permease_2, Amino acid permease.	2.22876e-10
NZ_CP047183.1\|WP_159912122.1\|333584_334604_-\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	4.5442e-101
NZ_CP047183.1\|WP_159912118.1\|330658_331990_-\|DUF21-domain-containing-protein	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	5.47505e-114

>NZ_CP047183.1|WP_159912112.1|327282_327879_+|sugar-O-acetyltransferase
MTLEDQRAHILTGAVYDDMTPELVAARERAVLASNAYNASFGRPPVEREALLRELVASVGGDAHLEPTFRCEFGFNITIGDRFYANFDCILLDGAPITIGDDVLFGPRVSIYTSNHALDPAERAAGACTAKPVVVGDGVWIGGGVTINQGVTIGDGAVIGSGSVVTRDVPPLTIAAGVPARVLRTITPDDRTGYRPAH
>NZ_CP047183.1|WP_159916769.1|325077_326988_+|amino-acid-transporter
MKAWLLEGLRDDSGAHPGPHAATAKTHSWWRVMCLTGVDYFSTLGYQPAIAALAAGLVSPLATIVLVVLTLLGALPVYRRVARESFRGEGSIAMLERLLPWWGGKLFVLVLLGFAATDFMITITLSAADATAHAVENPFAPAWFHGAEVPLTLGLIALLGIVFLRGFREAISIAVVLVAVFLLLNAIVIAVAIGHVAENPVVIGDWWSALTTQHGNPLVMVGIALIVFPKLALGLSGFETGVAVMPQIRGDAGDTEDAPVGRIRGAKRLLITAAVTMSAFLITSSFVTTLLIPQAQFQPGGEANGRALAYLAHEYLGEGFGTVYDVATICILWFAGASALAGLLNIVPRYLPRYGMAPQWAGAVRPLVLVFTVVAFVITILFRADVDAQGGAYATGVLVLITSASVAVFLSAKRKKQRKRAVGFAVIALVFVYTTVVNVIERPDGVRIAAVFIVGILAVSLVSRVHRSFQLRATSVVFDAAAIDFLTTDADDYGVIRILANEPDDGSEAEYRDKLAEEQRDSNLPMRGPVLFLEVHTTDSSDFEEDLVVQGRVCHGFRVLTVTSGNIPNTIATVLLEIRDLTGVIPDVYFEWTEGGPLSNMFRFLITGTGEVAPVTREVLRRAESRRDRRPGVHVG
>NZ_CP047183.1|WP_159912110.1|324234_324780_-|hypothetical-protein
MHLLLRLLDAGPRWGRHTVGASRYGVVRSELVVFAPGTSVEERRRLRLHAAGPQLVLAAMTAGAVGTLALDRLSLLLLAALALPTASLLLLSARSTRRLRCACARRLVIADVDSPAVAELAAIAAVLRRADRLLDDGVLTPLEHEEVWACAHDRVAGRVADRRSQPRAGGSGTSATDGSTS
>NZ_CP047183.1|WP_159912108.1|323611_324238_-|isochorismatase-family-protein
MTTPRRALILVDVQQEYFSGPLEIQYPPHAQSLPRIAAALDSAAAAGLPIAVVQHSAGEGAPIFDPSGPSFALHPEIEKRRSDSWKSVTKQFGTVFAGTDLLDWLREHDVDTITLVGYMTNNCILASAAEAETHGLRAEVLSDATGAIAISNDAGSIDAHSLHTTLMALLNSNFAAVAPTTVWISALKGEYTLPMSNLPESATAGAAR
>NZ_CP047183.1|WP_159912106.1|322284_323514_+|ornithine--oxo-acid-transaminase
MSITDTTTARSAALIAAEEEHAAHNYHPLPVVAATGEGAWITDVEGVRYLDCLAAYSAVNFGHSHPVLLEAAREQLGRVTLTSRAFHNDRLGPFVTALAALAGKDMVLPMNTGAEAVESGIKVARAWGYRVKGVAPGRANIVVAAGNFHGRTTTIISFSDDAEARDGFAPFTPGFRTVPFGDAEALEAAIDDDTVAVLIEPIQGEAGIVVPPADYLPAVREITARRNVLFIADEIQSGLGRTGATFACDLVGVVPDVYLLGKALGGGIVPVSAVVANSDVLGVLQPGQHGSTFGGNPLAAAVGLAVVEMLATGEYQALARERGAQLHARLQALIGRGVVAVRGAGLWAGIDIDPELASGRAVCEALMARGVLAKDTHGSTIRLAPPLVVTATEIDFAVDELEAVLASLR
>NZ_CP047183.1|WP_159912104.1|321320_322157_+|N-dimethylarginine-dimethylaminohydrolase
MTDTAVLAEAPARTSVAKTILMCRPEHFTVVYRINPWMDPQVPTDTSLAVRQWQTLYDTYADLGFTIELIEPEAGLPDMVYAANGGFVIDGIAYGASFTYPERQPEGPAYMDWFRSAGFDVRVPEEVNEGEGDFLLVGERILAGTGFRSASDSHAEVARVFGREVVTLELVNPSFYHLDTAIAVLDETNIAYLPSAFSEEGNRTLRELYPDAILVSEEDASVLGLNSFSDGLNVVIASRATGFERQLRERGYNPIGVDLSELLLGGGGVKCCTLELRR
>NZ_CP047183.1|WP_159912102.1|318708_320880_-|hypothetical-protein
MRTKTLSVSLFLALLLSLFVATPAQAAGSPAAPTNVSVTDNDCTDAVTVSWTPSASATAGYRIHVTSQYSGYYEDGPVYSAELIETGRTTTSTFDLPRSWDSYSFEVSSVSDFNAPYSGGKDGASLVASSTQSAPAEASFDHFWDVPAPGDLSVAADPTSSLATARWDRPSVGSAACNFDLYYYDLDNLNSQYDWDQYPDYEGSLDVDAASIDLNIQPFQRYRFCVWAASLSERPYNESPAFSHSPESCVTFVTGTSAPDSPGYVDGYSSGTAITVTWAAPWNDGGTDITGYRVSRDGTDASGSGPWSTVVAADRRSQTFTNLRPNTSYTFTVQAINAVGTSESATVTRTADPYYAPSVPTRVAGTTNDSVRSATISWAPPESAGNPAITGYRVSRNGVDNAGAGPWSTTVAATARSFTFTHLAAGATYTMSVTAINAGGESAAGSTVVRIGGTALTAATPTVTGTAAVGSTLTASAGTWGPSPVALAYQWRANGTAISGATGTTYRPVSADAGKVITVAVTGSKSGYVSTTRVSSGTPAVTGGAITAATPTISGTAKVGSTLTAKPGTWGPSPVALAYQWKANGTALSGATSATYTPTSATLGKTITVTVTGSKSGFTAVTKTSAKTSAVAAGTLSAATPTISGTAKVGSTLTAKPGTWGPSPVTLTYQWKANGTAISGATSATYKPTSATVGKKITVTVTGKKADYTTATRTSAATAAVVK
>NZ_CP047183.1|WP_159912100.1|316854_318516_-|hypothetical-protein
MPARSLAAIGVSALLLAGLAAGPAVAAPDLPGASAAQEAAAEVVLSGTIALRDADEEHPAPADPSFYVQVQDAEGAVVAEADTGPDFSLTVPGGEPLTLRASLIGSDDWYPTWFGDTPVAEAARTTRGTDESVAISLLRTAELSGSITADAVSGVSSPAFDVQAWWVDGGTYSLLDSVPVTGAPGAARAWDTGDLALPAGDYLLRLVEPGYPAYDDQYFSRLARLDERAVVSVPPGGRSGVDFFPSAYSSDVARLAGTDRYATAVAVTASGFAAGAPVVYLASGANWPDALSAGPAAAKQGGALLLTDPSVLPAVVAAELRRLAPQRIVVVGSALSVSDSVFQQVTALGIPTERIEGVDRYDTSRRIVEDAFPDGSYENVFVATGTNFPDALSVAPIAGRRAEPVLLVDGARSRLDQPTRDTLAGLDPSAVQLLGGAPSISTAVEADLRAAKIADTVSRIAGTDRHDTSRRLNDVFPPSELGDTVYLATATGFADALAVGPVAAKQGAPLYLSEPTCLPRSTRVKMQGHDLDQVLLLGSPLTLSAQVRSLSAC
>NZ_CP047183.1|WP_159912098.1|315905_316820_-|ROK-family-protein
MSATADRPLLVGIETGGTKVVAAVADAADPERILATTTLPTRGPIETLADLAGFVSGHGVDGTVAAVGVASFGPLDIDPGSPAYGHLTSTPKLGWEGTDVLGPIGAAAPGARLALVTDVNGAALGESRWGAGAGVDDFVYLTVGTGVGGGVIAGGRLLAGSGWPEVAHLLPRRHPEDGFAGACPFHGDCLEGLVAGPAISARWGVDGSRLGPEEAAANLRFSSYYLAQLVTTLAYVAGVRLAVVGGGVSKTPGLVPAVEAEVERLMGAPGATGTGGGRIRIVRPALGDESGVRGAISLAESLLG
>NZ_CP047183.1|WP_159912096.1|315369_315681_+|biopolymer-transporter-Tol
MNDEDDERWLVVKGRRWRRTDPSLPEDVVAGLTSHLGRGRSGVRSARLHDDAEAEALARTRVGLAKHGLGERGPAWWDEPEADRLERAREALRALEELDAPED
>NZ_CP047183.1|WP_159912114.1|328074_329514_-|MFS-transporter
MSTSTSPRGPVRSLVPARIDRLPWTRFHWSIVVGLGFSWVLDGLEIQIVASAGFAKEFGLSAFEVGLLGTIYLVGQIAGALIFGRLSDKLGRRKLFILTLVIYLVASGLAGLAPNYVFLAVFRFFAGMGIGGEYAAINSAIDELIPSKYRGRVDIAINGTYWGGAALGSAANLFFLNDALFAENVGWRLGFFLGPILGLAIIYLRRHIPESPRWLMTHGREEEAERTVDEIERRVEAEGGVLEPVDDSKAITVKATESIPFRTIAGVLLRQYPKRTLVGATMMITQSFLYNAIFFTYALVLENFYGVEQSAISYFFFPFAIGNLVGPLVLGHLFDVWGRRKMIFLTYGVSGAVLAVSAVLFSMDVLTATTQTILWCVSFFFASAGASSAYLTVSEIFPLELRSQAISYFFTLGQIAGAVAPALYGALIGDGSDRGPLTIGYFVGAAVMILGGVIALLFGVDAERRSLEDITEPLSTVKS
>NZ_CP047183.1|WP_159912116.1|329759_330641_+|SMP-30/gluconolactonase/LRE-family-protein
MIDATPAGTPTYVLSEAPVWDPDTARLTWVDIEAGAVLSAPVTAEGIGAISRTDVGEQIGAALPLGNGRTLVALTRRLAILEVDGSLTRGSELLPEGHRFNDGTIDPQGRLLVGSLTLGESAGDDVLLRIERDGSVTVLDDDLRLSNGLGFSPDGSVLYSADTESGVIHRRSYADGEHGTREPFVELEKGVFADGLTVDADGRVWVAVWGGSGVRVFEADGSPVEGEGIRIDAPHSSSIAFAGEDLDIAVVTSASRDLSADERARHPHAGGLWIAQPGARGRVATRWVEGPLP
>NZ_CP047183.1|WP_159912118.1|330658_331990_-|DUF21-domain-containing-protein
MDLDTLLNIGLVVLFVLLGGVFAGTEMAIVSLRESQVRAIEAGSERGRRIAELVRNPNTFLSAVQIGVTLAGFFSSAYGASTIAPDLVPPLQSLGLSASAASTVALILMTLVIAYLSLVLGELVPKRLAMQKSVTFTKALAPPLNALARLMRPVIWLLSVSTDAVVRLLGADPREKGESVSADEVRDMISSNTEIHEDSRRLLTDIFRADDRRVAEVMRPRPDVDFLRGALSVAEGYAAVLDQPHSRYPVVGDDFDDVLGFVHVRDLMSAFPEAGRAGTASSVADITRPILAVPGTTKVLAALRTMRQDGHQIAVVIDEYGGTDGIITLEDLLEELVGEIYDEYDGARQAVDAKAAEQLHDVDGGMILEDLAEQLGIELPEGPYETVGGFVLDRIGRVAVVGDSVLVGDHLLRVAETDRYRISRLTLVPQPASEPSGPTTPAV
>NZ_CP047183.1|WP_104225080.1|332146_332572_-|RbsD-or-FucU-transport
MLTTTLLHPEILHALARAGHGSRVLIADGNYPVGTTLGPNSALVHLNLRPDMLTVDEILDALLSAIVVEEATVMTPAPGIDVPAQDAFRRSLDGVPFTSLERHAFYAEARTPDVALTIASGDRRIYANLILTIGVRPADAS
>NZ_CP047183.1|WP_159912120.1|332581_333583_-|substrate-binding-domain-containing-protein
MATYKDLQRLTGLSLSTISKHYNGLPVRPENRAAIEAAAAQVGFRVNGFARGLRSRRSRTVGVLLPALDNEFHLSIIAGLERALHEEGIGVLVGVSRPEPGAAVDLLLEKMVDGIVAVPSAGDVDALRRASEQGTPVVTVDWIDDALVTDRVALDNAGAGASAARHLLDHGHRWIAVLGGEDGVSSTRERTAGFLAALAERGVHPASDAVVRGPLTVESGVAAVERILALRPRPTALFAGNRELTVGALIALGDSGLRVPTDLSVVGFDNVELARVVRPHLTTIAQPTEAIAAEAAALVRLRLESGSEQPGPQERRLPGRLLAGSSVAHLHDL
>NZ_CP047183.1|WP_159912122.1|333584_334604_-|aldo/keto-reductase
MAPTPPSHRVLASGSRIPAIGAGTFGSDRYDAETVGLAVEHSLRAGFRLLDCATVYGNEPRVGRAIADSGVDRDELFVMSKIWNDAHEPAAAVASVERSLADLGLDVLDAVFVHWPFPNHHPPHAETDARDPHARPYVHEAFLETWRALESLVDRGLVRHLGTSNVTIPKLERILADVRIAPQLNEMELHPCFQQPELFRFCLDHRIQPIGYSPLGSPSRPERDRVEGDIVDIEHPAVRAIADERGVHPAVVCLAWAVNRGQIPIPFAVKPEQIDANLAAASLVLTAEEQEALRGAERNNRLIKGQVFLWPGSTGWLDLWDADGTIPGWSGYGSPRATL
>NZ_CP047183.1|WP_159912124.1|334984_336634_-|trehalose-synthase
MRVTDTSDLWWRTAVFYNLDVKTFMDWDDDGVGDLEGLVHRIDYLAELGVSCLWLAPFYRSPGRDNGYDISDFYGVDERFGHHGDVVEVIRTAHDRGMRVIVDLVVNHTSDQHPWFQAARSSPDSPYRDYYVWRDEPPAYQPANVFPDAEDGVWFRDEEAGQYYLHHFYRHQPDLNTENPAVRDEIAKVIGFWLQLGVDGFRVDAVPYLIEPGARDEHEWLRLLRRFVSRRSGEAMLLGEVNVTREEQLGFFGGADADELSMQFDFIGNQRLYLALARQEAAPLVEALASRPEISVGSQWANFARNHDELTLDQLSDDERDEVFAAFAPEQSQRIHGRGIVRRLPPMVDGDPRRVRLVHSLVFSLPGTPVLYYGEEIGMGENADIPGRSAVRTPMQWSSAANGGFSRADAADLIAAPPGGGFGPEHVNAAAQLQDPDSLLAHVKGLAWLYRRSPEIGWGDYTHLPCDEPSVLAHRMSASTGTTVAVHNLASDPRTAHLLLPDAPAGARLVDSLGGESLPLGEDGSVSVSLDGYGARWFRVVTEDSRRLV
>NZ_CP047183.1|WP_159912126.1|336630_336834_-|hypothetical-protein
MTHHEHPHTATPAPEGPAASPTTAGSTSSWSATRGGRTSAPSASPASPLAPTLTPATPASSRTEPRA
>NZ_CP047183.1|WP_159912128.1|337204_338401_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MHPLDAQDPLAHCPELFVRTPEVRSYLDGNSLGRPLRASVARLARFAEEEWGGRLIRGWEEGWLDMPLEVGDALGSAVLGAAAGQTVVADSTTVLLYKLARAAIARQAEQGRDEIVVDTDNFPTDRYVLEGIAAETGSTLRWIDSDPGSGVGPDDLAPVLGERTALVLLSHVAYRSGFLADAAAITAQAHEAGALVLWDASHSVGSVPLELDAWGADLAVGCSYKYLNGGPGAPAWAYVASRHQGSLAQPVQGWMGVADMFEMGPGYRPAEGMRRFLSGTPPITGMLAMQDMIALIASVGMPAVRAKSEAMTAYALELADAWLVPRGVRVATPLDPARRGSHVTIAHESFAGLVPRLQAEGIVPDFRRPDGIRIGLSPLSTTFAELELGLAAVRDSLT
>NZ_CP047183.1|WP_159912130.1|338517_338913_-|cation-transport-regulator-ChaB
MPREEQIPSTIERSDEHAQKLWSAAHDSAVDSYGDGERAHRTAFAALKHEYEKVGDHWERKAESGPSDSRAEGHGRSPGGETAGGVDANATKAHLMDLAKRLDVSGRSRMTKAELVEALQRENTRRTRAAR

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Crispr_ID: NZ_CP047183_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047183_3

337028-337129

Orphan

Consensus_repeat	Method
CGAGTGCGACGACTTCTGGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047183_3

>merge|NZ_CP047183|3|337028-337129|CRISPRCasFinder
CGAGTGCGACGACTTCTGGACAGTGGGCAGAGGCTCGGGTGAGGGCTCGCGAGTGCTCGAGAGTTGTCGCAGTCGACGCCGAGTGCGACGACTTCTGGACAG

>NZ_CP047183|3|3|337028-337129|CRISPRCasFinder
CGAGTGCGACGACTTCTGGACAG	TGGGCAGAGGCTCGGGTGAGGGCTCGCGAGTGCTCGAGAGTTGTCGCAGTCGACGC
CGAGTGCGACGACTTCTGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047183.1\|WP_159912140.1\|345220_346144_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224096
NZ_CP047183.1\|WP_104225080.1\|332146_332572_-\|RbsD-or-FucU-transport	unknown	unknown	gnl\|CDD\|377444
NZ_CP047183.1\|WP_159912126.1\|336630_336834_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047183.1\|WP_159912124.1\|334984_336634_-\|trehalose-synthase	unknown	unknown	gnl\|CDD\|200473
NZ_CP047183.1\|WP_159912130.1\|338517_338913_-\|cation-transport-regulator-ChaB	unknown	unknown	gnl\|CDD\|377614
NZ_CP047183.1\|WP_159912136.1\|342268_343930_+\|DUF222-domain-containing-protein	unknown	unknown	gnl\|CDD\|367155
NZ_CP047183.1\|WP_159912138.1\|344306_345212_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223472
NZ_CP047183.1\|WP_159912128.1\|337204_338401_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|226363
NZ_CP047183.1\|WP_159912116.1\|329759_330641_+\|SMP-30/gluconolactonase/LRE-family-protein	unknown	unknown	gnl\|CDD\|369882
NZ_CP047183.1\|WP_159912114.1\|328074_329514_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP047183.1\|WP_159912142.1\|347479_348526_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|366736
NZ_CP047183.1\|WP_159912144.1\|348989_349586_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378650
NZ_CP047183.1\|WP_159916772.1\|346143_347394_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP047183.1\|WP_159912134.1\|340334_341591_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|273751
NZ_CP047183.1\|WP_159912120.1\|332581_333583_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224525
NZ_CP047183.1\|WP_159912132.1\|339062_340289_+\|DNA-photolyase	unknown	unknown	gnl\|CDD\|223492
NZ_CP047183.1\|WP_159912112.1\|327282_327879_+\|sugar-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
NZ_CP047183.1\|WP_159916769.1\|325077_326988_+\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|372624
NZ_CP047183.1\|WP_159912122.1\|333584_334604_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
NZ_CP047183.1\|WP_159912118.1\|330658_331990_-\|DUF21-domain-containing-protein	unknown	unknown	gnl\|CDD\|224173

Protein	Function_ID	Function_description	E-value
NZ_CP047183.1\|WP_159912140.1\|345220_346144_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.36318e-93
NZ_CP047183.1\|WP_104225080.1\|332146_332572_-\|RbsD-or-FucU-transport	gnl\|CDD\|377444	pfam05025, RbsD_FucU, RbsD / FucU transport protein family. The Escherichia coli high-affinity ribose-transport system consists of six proteins encoded by the rbs operon (rbsD, rbsA, rbsC, rbsB, rbsK and rbsR). Of the six components, RbsD is the only one whose function is unknown although it is thought that it somehow plays a critical role in PtsG-mediated ribose transport. This family also includes FucU a protein from the fucose biosynthesis operon that is presumably also involved in fucose transport by similarity to RbsD.	7.59398e-37
NZ_CP047183.1\|WP_159912124.1\|334984_336634_-\|trehalose-synthase	gnl\|CDD\|200473	cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in Trehalose synthetase. Trehalose synthetase (TreS) catalyzes the reversible interconversion of trehalose and maltose. The enzyme catalyzes the reaction in both directions, but the preferred substrate is maltose. Glucose is formed as a by-product of this reaction. It is believed that the catalytic mechanism may involve the cutting of the incoming disaccharide and transfer of a glucose to an enzyme-bound glucose. This enzyme also catalyzes production of a glucosamine disaccharide from maltose and glucosamine. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP047183.1\|WP_159912134.1\|340334_341591_-\|FAD-binding-protein	gnl\|CDD\|273751	TIGR01678, D-arabinono-14-lactone_oxidase, sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.	6.4817e-44
NZ_CP047183.1\|WP_159912136.1\|342268_343930_+\|DUF222-domain-containing-protein	gnl\|CDD\|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	1.37346e-10
NZ_CP047183.1\|WP_159912138.1\|344306_345212_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.98831e-85
NZ_CP047183.1\|WP_159912122.1\|333584_334604_-\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	4.5442e-101
NZ_CP047183.1\|WP_159912128.1\|337204_338401_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|226363	COG3844, COG3844, Kynureninase [Amino acid transport and metabolism].	5.84529e-108
NZ_CP047183.1\|WP_159912116.1\|329759_330641_+\|SMP-30/gluconolactonase/LRE-family-protein	gnl\|CDD\|369882	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region. This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE.	1.71942e-56
NZ_CP047183.1\|WP_159912114.1\|328074_329514_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.17654e-40
NZ_CP047183.1\|WP_159912142.1\|347479_348526_-\|phosphotransferase	gnl\|CDD\|366736	pfam01636, APH, Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.	1.24234e-09
NZ_CP047183.1\|WP_159912144.1\|348989_349586_-\|hypothetical-protein	gnl\|CDD\|378650	pfam11377, DUF3180, Protein of unknown function (DUF3180). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	0.000457701
NZ_CP047183.1\|WP_159916772.1\|346143_347394_-\|extracellular-solute-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.74158e-72
NZ_CP047183.1\|WP_159912120.1\|332581_333583_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.78419e-90
NZ_CP047183.1\|WP_159912132.1\|339062_340289_+\|DNA-photolyase	gnl\|CDD\|223492	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair].	2.57028e-28
NZ_CP047183.1\|WP_159912112.1\|327282_327879_+\|sugar-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	5.72849e-96
NZ_CP047183.1\|WP_159916769.1\|325077_326988_+\|amino-acid-transporter	gnl\|CDD\|372624	pfam13520, AA_permease_2, Amino acid permease.	2.22876e-10
NZ_CP047183.1\|WP_159912130.1\|338517_338913_-\|cation-transport-regulator-ChaB	gnl\|CDD\|377614	pfam06150, ChaB, ChaB. This family of proteins contain a conserved 60 residue region. This protein is known as ChaB in E. coli and is found next to ChaA which is a cation transporter protein. ChaB may be regulate ChaA function in some way.	4.41281e-16
NZ_CP047183.1\|WP_159912118.1\|330658_331990_-\|DUF21-domain-containing-protein	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	5.47505e-114

>NZ_CP047183.1|WP_159912126.1|336630_336834_-|hypothetical-protein
MTHHEHPHTATPAPEGPAASPTTAGSTSSWSATRGGRTSAPSASPASPLAPTLTPATPASSRTEPRA
>NZ_CP047183.1|WP_159912124.1|334984_336634_-|trehalose-synthase
MRVTDTSDLWWRTAVFYNLDVKTFMDWDDDGVGDLEGLVHRIDYLAELGVSCLWLAPFYRSPGRDNGYDISDFYGVDERFGHHGDVVEVIRTAHDRGMRVIVDLVVNHTSDQHPWFQAARSSPDSPYRDYYVWRDEPPAYQPANVFPDAEDGVWFRDEEAGQYYLHHFYRHQPDLNTENPAVRDEIAKVIGFWLQLGVDGFRVDAVPYLIEPGARDEHEWLRLLRRFVSRRSGEAMLLGEVNVTREEQLGFFGGADADELSMQFDFIGNQRLYLALARQEAAPLVEALASRPEISVGSQWANFARNHDELTLDQLSDDERDEVFAAFAPEQSQRIHGRGIVRRLPPMVDGDPRRVRLVHSLVFSLPGTPVLYYGEEIGMGENADIPGRSAVRTPMQWSSAANGGFSRADAADLIAAPPGGGFGPEHVNAAAQLQDPDSLLAHVKGLAWLYRRSPEIGWGDYTHLPCDEPSVLAHRMSASTGTTVAVHNLASDPRTAHLLLPDAPAGARLVDSLGGESLPLGEDGSVSVSLDGYGARWFRVVTEDSRRLV
>NZ_CP047183.1|WP_159912122.1|333584_334604_-|aldo/keto-reductase
MAPTPPSHRVLASGSRIPAIGAGTFGSDRYDAETVGLAVEHSLRAGFRLLDCATVYGNEPRVGRAIADSGVDRDELFVMSKIWNDAHEPAAAVASVERSLADLGLDVLDAVFVHWPFPNHHPPHAETDARDPHARPYVHEAFLETWRALESLVDRGLVRHLGTSNVTIPKLERILADVRIAPQLNEMELHPCFQQPELFRFCLDHRIQPIGYSPLGSPSRPERDRVEGDIVDIEHPAVRAIADERGVHPAVVCLAWAVNRGQIPIPFAVKPEQIDANLAAASLVLTAEEQEALRGAERNNRLIKGQVFLWPGSTGWLDLWDADGTIPGWSGYGSPRATL
>NZ_CP047183.1|WP_159912120.1|332581_333583_-|substrate-binding-domain-containing-protein
MATYKDLQRLTGLSLSTISKHYNGLPVRPENRAAIEAAAAQVGFRVNGFARGLRSRRSRTVGVLLPALDNEFHLSIIAGLERALHEEGIGVLVGVSRPEPGAAVDLLLEKMVDGIVAVPSAGDVDALRRASEQGTPVVTVDWIDDALVTDRVALDNAGAGASAARHLLDHGHRWIAVLGGEDGVSSTRERTAGFLAALAERGVHPASDAVVRGPLTVESGVAAVERILALRPRPTALFAGNRELTVGALIALGDSGLRVPTDLSVVGFDNVELARVVRPHLTTIAQPTEAIAAEAAALVRLRLESGSEQPGPQERRLPGRLLAGSSVAHLHDL
>NZ_CP047183.1|WP_104225080.1|332146_332572_-|RbsD-or-FucU-transport
MLTTTLLHPEILHALARAGHGSRVLIADGNYPVGTTLGPNSALVHLNLRPDMLTVDEILDALLSAIVVEEATVMTPAPGIDVPAQDAFRRSLDGVPFTSLERHAFYAEARTPDVALTIASGDRRIYANLILTIGVRPADAS
>NZ_CP047183.1|WP_159912118.1|330658_331990_-|DUF21-domain-containing-protein
MDLDTLLNIGLVVLFVLLGGVFAGTEMAIVSLRESQVRAIEAGSERGRRIAELVRNPNTFLSAVQIGVTLAGFFSSAYGASTIAPDLVPPLQSLGLSASAASTVALILMTLVIAYLSLVLGELVPKRLAMQKSVTFTKALAPPLNALARLMRPVIWLLSVSTDAVVRLLGADPREKGESVSADEVRDMISSNTEIHEDSRRLLTDIFRADDRRVAEVMRPRPDVDFLRGALSVAEGYAAVLDQPHSRYPVVGDDFDDVLGFVHVRDLMSAFPEAGRAGTASSVADITRPILAVPGTTKVLAALRTMRQDGHQIAVVIDEYGGTDGIITLEDLLEELVGEIYDEYDGARQAVDAKAAEQLHDVDGGMILEDLAEQLGIELPEGPYETVGGFVLDRIGRVAVVGDSVLVGDHLLRVAETDRYRISRLTLVPQPASEPSGPTTPAV
>NZ_CP047183.1|WP_159912116.1|329759_330641_+|SMP-30/gluconolactonase/LRE-family-protein
MIDATPAGTPTYVLSEAPVWDPDTARLTWVDIEAGAVLSAPVTAEGIGAISRTDVGEQIGAALPLGNGRTLVALTRRLAILEVDGSLTRGSELLPEGHRFNDGTIDPQGRLLVGSLTLGESAGDDVLLRIERDGSVTVLDDDLRLSNGLGFSPDGSVLYSADTESGVIHRRSYADGEHGTREPFVELEKGVFADGLTVDADGRVWVAVWGGSGVRVFEADGSPVEGEGIRIDAPHSSSIAFAGEDLDIAVVTSASRDLSADERARHPHAGGLWIAQPGARGRVATRWVEGPLP
>NZ_CP047183.1|WP_159912114.1|328074_329514_-|MFS-transporter
MSTSTSPRGPVRSLVPARIDRLPWTRFHWSIVVGLGFSWVLDGLEIQIVASAGFAKEFGLSAFEVGLLGTIYLVGQIAGALIFGRLSDKLGRRKLFILTLVIYLVASGLAGLAPNYVFLAVFRFFAGMGIGGEYAAINSAIDELIPSKYRGRVDIAINGTYWGGAALGSAANLFFLNDALFAENVGWRLGFFLGPILGLAIIYLRRHIPESPRWLMTHGREEEAERTVDEIERRVEAEGGVLEPVDDSKAITVKATESIPFRTIAGVLLRQYPKRTLVGATMMITQSFLYNAIFFTYALVLENFYGVEQSAISYFFFPFAIGNLVGPLVLGHLFDVWGRRKMIFLTYGVSGAVLAVSAVLFSMDVLTATTQTILWCVSFFFASAGASSAYLTVSEIFPLELRSQAISYFFTLGQIAGAVAPALYGALIGDGSDRGPLTIGYFVGAAVMILGGVIALLFGVDAERRSLEDITEPLSTVKS
>NZ_CP047183.1|WP_159912112.1|327282_327879_+|sugar-O-acetyltransferase
MTLEDQRAHILTGAVYDDMTPELVAARERAVLASNAYNASFGRPPVEREALLRELVASVGGDAHLEPTFRCEFGFNITIGDRFYANFDCILLDGAPITIGDDVLFGPRVSIYTSNHALDPAERAAGACTAKPVVVGDGVWIGGGVTINQGVTIGDGAVIGSGSVVTRDVPPLTIAAGVPARVLRTITPDDRTGYRPAH
>NZ_CP047183.1|WP_159916769.1|325077_326988_+|amino-acid-transporter
MKAWLLEGLRDDSGAHPGPHAATAKTHSWWRVMCLTGVDYFSTLGYQPAIAALAAGLVSPLATIVLVVLTLLGALPVYRRVARESFRGEGSIAMLERLLPWWGGKLFVLVLLGFAATDFMITITLSAADATAHAVENPFAPAWFHGAEVPLTLGLIALLGIVFLRGFREAISIAVVLVAVFLLLNAIVIAVAIGHVAENPVVIGDWWSALTTQHGNPLVMVGIALIVFPKLALGLSGFETGVAVMPQIRGDAGDTEDAPVGRIRGAKRLLITAAVTMSAFLITSSFVTTLLIPQAQFQPGGEANGRALAYLAHEYLGEGFGTVYDVATICILWFAGASALAGLLNIVPRYLPRYGMAPQWAGAVRPLVLVFTVVAFVITILFRADVDAQGGAYATGVLVLITSASVAVFLSAKRKKQRKRAVGFAVIALVFVYTTVVNVIERPDGVRIAAVFIVGILAVSLVSRVHRSFQLRATSVVFDAAAIDFLTTDADDYGVIRILANEPDDGSEAEYRDKLAEEQRDSNLPMRGPVLFLEVHTTDSSDFEEDLVVQGRVCHGFRVLTVTSGNIPNTIATVLLEIRDLTGVIPDVYFEWTEGGPLSNMFRFLITGTGEVAPVTREVLRRAESRRDRRPGVHVG
>NZ_CP047183.1|WP_159912128.1|337204_338401_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MHPLDAQDPLAHCPELFVRTPEVRSYLDGNSLGRPLRASVARLARFAEEEWGGRLIRGWEEGWLDMPLEVGDALGSAVLGAAAGQTVVADSTTVLLYKLARAAIARQAEQGRDEIVVDTDNFPTDRYVLEGIAAETGSTLRWIDSDPGSGVGPDDLAPVLGERTALVLLSHVAYRSGFLADAAAITAQAHEAGALVLWDASHSVGSVPLELDAWGADLAVGCSYKYLNGGPGAPAWAYVASRHQGSLAQPVQGWMGVADMFEMGPGYRPAEGMRRFLSGTPPITGMLAMQDMIALIASVGMPAVRAKSEAMTAYALELADAWLVPRGVRVATPLDPARRGSHVTIAHESFAGLVPRLQAEGIVPDFRRPDGIRIGLSPLSTTFAELELGLAAVRDSLT
>NZ_CP047183.1|WP_159912130.1|338517_338913_-|cation-transport-regulator-ChaB
MPREEQIPSTIERSDEHAQKLWSAAHDSAVDSYGDGERAHRTAFAALKHEYEKVGDHWERKAESGPSDSRAEGHGRSPGGETAGGVDANATKAHLMDLAKRLDVSGRSRMTKAELVEALQRENTRRTRAAR
>NZ_CP047183.1|WP_159912132.1|339062_340289_+|DNA-photolyase
MFIPTRAAGLEALDDFVARAGSAYARDRNHDLGPSRDNVSGLSPYVRHRLVTEREVVAAVLARHRLTAAEKFVQEVFWRTYWKGWLEQNPEVWRRYRREVAESSAGDPPPGYLDAIGGRSGIDAMDAWVSELVETGYLHNHARMWFASIWIFTLGLPWQLGADFFYRHLLDGDAASNTLSWRWVAGLQTPGKTYLASASNIARYTEGRFSPSGLATTAPALTEEPFPPRAPLKQDDVVGTVGARPGLLLHEEDLEAESLLAEQPGLAERLVASAVAGDAGGRSPSGVSDAVAAFTAAALADAAERTSDASGRPARVLADARPGTVVDWAVSERIDTVVVPYAPVGPVGERVEALRSALADEGIALVTVRRRWDGAAWPSASRGFFPFRKRIPALVRDLVEPADAARLF
>NZ_CP047183.1|WP_159912134.1|340334_341591_-|FAD-binding-protein
MTSRSNWAGTYEYRAAAIIEPESVEEVQRLVRENERVRALGSRHSFNSLPDTPGALLHLGRLASDPVIDAEASTVTVGGATRYGVVAAHLHSNGYALHNMGSLPHISVAGAIATGTHGSGDRNANLSSAVSALELVTADGSLRTIRRGEPGFEGVVVGLGAFGIVTRVTLDIQPTFDVRQDAFVDLPWERVLDDFDAITSSAYSVSLMTHWSSPTVEQLWLKTKVAAGSVADVDATHLGAVAASASLFAVSEGVDSNLNPFGGSVGPWSERLPHFRLDREPSAGDEIQSEYMVPRANVREAIVALRAIGERIDDVLLITELRTMAGDDQWLSPAGGRDSVGVHFTFKKDRAGVDAVLPAVEGALLPLGARPHWGKHFLAGADEIAPLYPHLDEWRTLRSEWDPAGRFASDFLRDRLLG
>NZ_CP047183.1|WP_159912136.1|342268_343930_+|DUF222-domain-containing-protein
MQTLDAVRALAGLAAGLARSSAPVLLASAVALHTAYRAALLVPESFARGSGLSRSEAGDLVERSIRAEFAMALGMSERAASRRLEHARLLIEDLPATRALLSEARILWEAGEVVCAAAASLPASTRAAFDERAAAAALSQTPTQLRRTVARLRDELHEEPFTERHARAREDRSVWLGAEADGMATLCALLPAPVALGAYNRLDRIARSLRDGADAAGIGLGFGATAKASGNASAGAGAGACAHGGAGAGGDVRVAVGAGADAGAGAGAGLGAETGGGAVGNAGISLGDGRTLAQLRADALVDLLIDGDIAGDGSTGEGASGVPASVCGVRADVRLTLAASTAVGLDDAPADLDGYGLVPADVARELVRTAASFTRVLTDPDTGAVASVGRTVRVPPPRMRLQLQLRDRTCRFPGCTRPASTAEADHTLEWRNGGETALGNLASLCVAHHHVRHGDRWTYVLRPDGTVVWTTPTGRRITDRPQALPGAPLMPTQRPTAHSSRESSPEPPPQPPRSSSSRSWSSRPGSSRSSSPRPSPSLLSPTRPRFVDAPPPF
>NZ_CP047183.1|WP_159912138.1|344306_345212_-|ABC-transporter-permease-subunit
MSSSTVTTPAAVAAATARETPRRRPSRRDGSRSGLVVRLVVAIVASAIVFFPLYWMLVIAFSPRGEVFAPGPPRFWPSEISFENFTTVFARFPVGEWFVNSVVIGAFVTVFTVVVNLLAGWGFARLRFPGRNLLFLLALATMMIPVQAIMVAQFKLVTGLQIYGTYWSVILPGAAAAFGIFLARQFFLSIPEELIEAARIDGAGHLRVFLQIVLPLSKPLIAVLILLTLLGSWNDFAWPLIALKDNELFTLPIGLLYLKGQSTPDYSASMALALVSVLPMVLLFLCFQRYFVQGFARSGIR
>NZ_CP047183.1|WP_159912140.1|345220_346144_-|ABC-transporter-permease-subunit
MTATTLRGRAGSSTRPRSARTREALAGLGFVGPNLLLMALFLFVPILWAIQLSFQESRGFGTPEWVGFANYLRMGADPVFWQSLGNTLLFTAVTVPLELAGGLGLAVLLNSVLPARGIFRTVIVLPLVISGVASGMIAVTIFSESSGIVNKVLSSLGASPVAWQSDGSAAMISVMLTAVWLRIGFNMVIYLAGLQSVSPELYEAARIDGATRWQQFRALTVPLVGPSTFFLLIMNVIASFQVFDIVFVMTGGGPGFSTSVLGTYAYRNGFQVREQGYGAALGVVILLVSLAFTYLQWRTSRTRDLVD
>NZ_CP047183.1|WP_159916772.1|346143_347394_-|extracellular-solute-binding-protein
MASTAALTGCSGFGGGGGGGSADGDSITFTTWASESEQAAFESLIADFEAENDGASVELNVVPYDQMFSNIDAQLSSGEAPDVFRVDYGNLGVYSSQEQLLDLTDRIDDFDSFTPAFQEAVSFEGKPYGVPHQTDVSALLVNTQLLAAAGVTDIPTTADEAWTWEEFADVSAKLRASLPAEQYPFAYNWQLGGTPRWLSWLFEADGTLLEEDGTTPAIDSEAGAKALDFTKSFFDNSWVPPTSSVKSATYADSFFTEQTTAMAFAGSFLVPDIDNLADFEWAATPMPVDERGATDLGGNALVATADTDNAELATEFLSFMTQADTMAEFCAATNELPTRSDIDPASIDFAVRPDVMPVFVEQAATITPRDVQQLTSPFLAKISVAMQDQLEEAFVGGRSTEETLSGLDAAIQQATS
>NZ_CP047183.1|WP_159912142.1|347479_348526_-|phosphotransferase
MDTIEEAGAWARTLVRREFGVGLVDLEPVVGGLDHGARVWCASDADGALWSVKASRRDGRFGLALSAGLGEAGVRGIASPRRASDGLPWTEDAGQRVSLAPWILGEDAVETGEDALDWHGFGAVLRSVHDAEPPAVAPPVRRGIRRLRRRPADLLAETDERLTADDAHPRLTAVWNEHRSRLDALALAERRLKRTRTPTSRVPLHGDPHPGNVVIDEAGRPWLIDFDEATVAPREVDLLLIELGVIYSRPITDGQRSAFRSGYGEALIDDERIIRFGCVRAVEDVAATVALALADPGPEEREAAPVPASRLGRAASALPVPTPLDLLAGQLGPHGLVSLVETALRRPA
>NZ_CP047183.1|WP_159912144.1|348989_349586_-|hypothetical-protein
MTQEVQSTRLRSLGSETVFAVTVGVAAAWSAARASELYGGWGVVLAVVAVIVAVLGFRLRRRLEERWSRPSLERLRAEHPDGGVTAVLNTPETLSSLRTLAIAGAAVDLASLRAAKSDAVLLAVVTARALSLFRADADLSPIAFLPLTGGETPESVTGYHHGRALTAPVLTIRQQGVEARIALFPADGPRTITGAPPR

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Crispr_ID: NZ_CP047183_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047183_4

620326-620436

Orphan

Consensus_repeat	Method
AGTGCGACAACTCCTGCACATTCGCGGGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047183_4

>merge|NZ_CP047183|4|620326-620436|CRISPRCasFinder
AGTGCGACAACTCCTGCACATTCGCGGGAGCGCCCGAGCGCTCGACCAGCGAGTGCGCGAAAGTCGTCGCAGTCGAGCGCCAGTGCGACAACTCCTGCACACTCGCGGGAG

>NZ_CP047183|4|4|620326-620436|CRISPRCasFinder
AGTGCGACAACTCCTGCACATTCGCGGGAG	CGCCCGAGCGCTCGACCAGCGAGTGCGCGAAAGTCGTCGCAGTCGAGCGCC
AGTGCGACAACTCCTGCACACTCGCGGGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047183.1\|WP_159912511.1\|608741_610301_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224048
NZ_CP047183.1\|WP_159912535.1\|626628_627612_-\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|235468
NZ_CP047183.1\|WP_159912519.1\|615244_616009_-\|SCO1664-family-protein	unknown	unknown	gnl\|CDD\|274813
NZ_CP047183.1\|WP_159912541.1\|629599_632497_+\|family-43-glycosylhydrolase	unknown	unknown	gnl\|CDD\|350115
NZ_CP047183.1\|WP_159912515.1\|611722_613105_+\|magnesium-chelatase	unknown	unknown	gnl\|CDD\|224160
NZ_CP047183.1\|WP_159912509.1\|607905_608745_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224094
NZ_CP047183.1\|WP_159912521.1\|616819_617506_-\|MSMEG_4193-family-putative-phosphomutase	unknown	unknown	gnl\|CDD\|163560
NZ_CP047183.1\|WP_159912517.1\|613097_615146_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227204
NZ_CP047183.1\|WP_159912513.1\|610520_611579_-\|PQQ-dependent-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|369642
NZ_CP047183.1\|WP_159912539.1\|628961_629603_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047183.1\|WP_104225051.1\|616005_616539_-\|DUF3090-domain-containing-protein	unknown	unknown	gnl\|CDD\|378626
NZ_CP047183.1\|WP_159912537.1\|627652_628552_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380491
NZ_CP047183.1\|WP_159912525.1\|618662_620240_+\|transporter	unknown	unknown	unknown
NZ_CP047183.1\|WP_159912543.1\|635161_636109_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP047183.1\|WP_159912529.1\|621323_623459_+\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
NZ_CP047183.1\|WP_159912531.1\|623586_624093_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235449
NZ_CP047183.1\|WP_159916811.1\|632634_635016_+\|family-43-glycosylhydrolase	unknown	unknown	gnl\|CDD\|350117
NZ_CP047183.1\|WP_159912523.1\|617760_618681_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP047183.1\|WP_159912527.1\|620711_621197_+\|2'-5'-RNA-ligase-family-protein	unknown	unknown	gnl\|CDD\|379265
NZ_CP047183.1\|WP_159912533.1\|624390_626535_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173839

Protein	Function_ID	Function_description	E-value
NZ_CP047183.1\|WP_159912535.1\|626628_627612_-\|malate-dehydrogenase	gnl\|CDD\|235468	PRK05442, PRK05442, malate dehydrogenase; Provisional.	0
NZ_CP047183.1\|WP_159912519.1\|615244_616009_-\|SCO1664-family-protein	gnl\|CDD\|274813	TIGR03843, Phosphatidylinositol_3-_and_4-kinase, conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.	1.65051e-120
NZ_CP047183.1\|WP_159912541.1\|629599_632497_+\|family-43-glycosylhydrolase	gnl\|CDD\|350115	cd09001, GH43_FsAxh1-like, Glycosyl hydrolase family 43 such as Fibrobacter succinogenes subsp. succinogenes S85 arabinoxylan alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been annotated as having beta-1,4-xylosidase (beta-D-xylosidase; xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. This subfamily includes the characterized Clostridium stercorarium F-9 beta-xylosidase Xyl43B. It also includes Humicola insolens AXHd3 (HiAXHd3), a GH43 arabinofuranosidase (EC 3.2.1.55) that hydrolyzes O3-linked arabinose of doubly substituted xylans, a feature of the polysaccharide that is recalcitrant to degradation. It possesses an additional C-terminal beta-sandwich domain such that the interface between the domains comprises a xylan binding cleft that houses the active site pocket. The HiAXHd3 active site is tuned to hydrolyze arabinofuranosyl or xylosyl linkages, and the topology of the distal regions of the substrate binding surface confers specificity. It also includes Fibrobacter succinogenes subsp. succinogenes S85 arabinoxylan alpha-L-arabinofuranosidase (Axh1;Fisuc_1769;FSU_2269), Paenibacillus sp. E18 alpha-L-arabinofuranosidase (Abf43A), Bifidobacterium adolescentis ATCC 15703 double substituted xylan alpha-1,3-L-specific arabinofuranosidase d3 (AXHd3;AXH-d3;BaAXH-d3;BAD_0301;E-AFAM2), and Chrysosporium lucknowense C1 arabinoxylan hydrolase / double substituted xylan alpha-1,3-L-arabinofuranosidase (Abn7;AXHd). A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	1.20421e-113
NZ_CP047183.1\|WP_159912515.1\|611722_613105_+\|magnesium-chelatase	gnl\|CDD\|224160	COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].	2.19847e-96
NZ_CP047183.1\|WP_159912509.1\|607905_608745_+\|ABC-transporter-permease-subunit	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.46953e-77
NZ_CP047183.1\|WP_159912521.1\|616819_617506_-\|MSMEG_4193-family-putative-phosphomutase	gnl\|CDD\|163560	TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.	1.63365e-105
NZ_CP047183.1\|WP_159912517.1\|613097_615146_+\|hypothetical-protein	gnl\|CDD\|227204	COG4867, COG4867, Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only].	0
NZ_CP047183.1\|WP_159912513.1\|610520_611579_-\|PQQ-dependent-sugar-dehydrogenase	gnl\|CDD\|369642	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase. Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold.	8.5694e-69
NZ_CP047183.1\|WP_159912529.1\|621323_623459_+\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP047183.1\|WP_159912537.1\|627652_628552_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|380491	cd06267, PBP1_LacI_sugar_binding-like, ligand binding domain of the LacI transcriptional regulator family belonging to the type 1 periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI transcriptional regulator family belonging to the type 1 periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.	7.35316e-85
NZ_CP047183.1\|WP_159912511.1\|608741_610301_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NZ_CP047183.1\|WP_159912543.1\|635161_636109_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.74592e-42
NZ_CP047183.1\|WP_104225051.1\|616005_616539_-\|DUF3090-domain-containing-protein	gnl\|CDD\|378626	pfam11290, DUF3090, Protein of unknown function (DUF3090). This family of proteins with unknown function appears to be restricted to Actinobacteria.	1.60314e-86
NZ_CP047183.1\|WP_159912531.1\|623586_624093_-\|hypothetical-protein	gnl\|CDD\|235449	PRK05415, PRK05415, hypothetical protein; Provisional.	0.000308846
NZ_CP047183.1\|WP_159916811.1\|632634_635016_+\|family-43-glycosylhydrolase	gnl\|CDD\|350117	cd09003, GH43_XynD-like, Glycosyl hydrolase family 43 protein such as Bacillus subtilis arabinoxylan arabinofuranohydrolase (XynD;BsAXH-m23;BSU18160). This glycosyl hydrolase family 43 (GH43) subgroup includes characterized Bacillus subtilis arabinoxylan arabinofuranohydrolase (AXH), Caldicellulosiruptor sp. Tok7B.1 beta-1,4-xylanase (EC 3.2.1.8) / alpha-L-arabinosidase (EC 3.2.1.55) XynA, Caldicellulosiruptor sp. Rt69B.1 xylanase C (EC 3.2.1.8) XynC, and Caldicellulosiruptor saccharolyticus beta-xylosidase (EC 3.2.1.37)/ alpha-L-arabinofuranosidase (EC 3.2.1.55) XynF. It belongs to the glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) which includes family 43 (GH43) and 62 (GH62) families. It belongs to the GH43_AXH-like subgroup which includes enzymes that have been annotated as having beta-xylosidase, alpha-L-arabinofuranosidase and arabinoxylan alpha-L-1,3-arabinofuranohydrolase, xylanase (endo-alpha-L-arabinanase) as well as AXH activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Bacillus subtilis AXH (BsAXH-m2,3) has been shown to cleave arabinose units from O-2- or O-3-mono-substituted xylose residues and superposition of its structure with known structures of the GH43 exo-acting enzymes, beta-xylosidase and alpha-L-arabinanase, each in complex with their substrate, reveals a different orientation of the sugar backbone. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	3.37555e-151
NZ_CP047183.1\|WP_159912523.1\|617760_618681_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	6.26219e-78
NZ_CP047183.1\|WP_159912527.1\|620711_621197_+\|2'-5'-RNA-ligase-family-protein	gnl\|CDD\|379265	pfam13563, 2_5_RNA_ligase2, 2'-5' RNA ligase superfamily. This family contains proteins related to pfam02834. These proteins are likely to be enzymes, but they may not share the RNA ligase activity.	0.00103971
NZ_CP047183.1\|WP_159912533.1\|624390_626535_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173839	cd01150, AXO, Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.	1.40824e-160

>NZ_CP047183.1|WP_159912525.1|618662_620240_+|transporter
MVAHLLRLRLLLLRNSLTRNVWQLIGVILGGLYAIAVLGLVAAGLVALGGTDPAFANVAIVLGGSALILGWVLGPIFLSGSDQSLDLPTLATFPIPLRTLLLGLAAAGLAGIPGVVTTLGALASAAAWWSRPIGILPGLVAAVIGVATCVVASRLIGALTTGLGSSRRYREVIGGVVLVVVILLGPLFFGLTNVIRDGLDVLPVIAGALGWSPLGAIWAVPGSVVAGDWVAAIARLLIGLATLAVLVWAWARALRHALAEPAASGAHSASGSAGLGLFARFPGTPTGAVAARALGYWWRDPRYSRGLLVIPAVVVLAVFYSAIGSGGDTFVLLSAVLVGLIFGVTLCADVSYDGTAWAAHVSSGVTGSADRAGRVIAAAIIGIPAVVVVAVGTALYAGRADAIPAVLGMALALVLSGFGVSSVASSLVVYPVPAPGDSPLKTPPGSGMISSVVMLGSMAATGLLALPSIVLGAISLIGGDPAFGLIGLAAALVLGTVFALVGIRVGGRIVDRRAPELFAALVTIG
>NZ_CP047183.1|WP_159912523.1|617760_618681_+|ATP-binding-cassette-domain-containing-protein
MDGTTPPGIPQDGTDTELAAAERTAADGTTAELADSARTDSATPAWAAPEASGRHGEVALRIRGLRKRFGDKEAVKDIDLDVPAGSFFGLVGPNGAGKTTTLSMATALLRPDSGVVTIHEVDVWKDTLEAKRLIGVLADGVKLFDRLTGLQLVTYYGLLCGLERPTVVERTNDLLALLGLDPADRTLVVDYSAGMTKKIALACALVRAPRLLVLDEPFESVDPVSAANIRDILTGFVASGGTVIVSSHSMDLVERMCDRVAVIADGRVLASGTLEEVRAGSSLEERFVELVGGRTHQEGPAWLRIS
>NZ_CP047183.1|WP_159912521.1|616819_617506_-|MSMEG_4193-family-putative-phosphomutase
MPTLLLVRHGRTTANTAGILAGRTAGVRLDDVGRAQAARTGERLAAVELAAVVSSPLERCRQTTRFVLDRQTGSPATVIDKGITECDYGDWSGRSLRDLATEPLWATVQNQPSAVVFPGGEGMLAMQARAVSAIRRHDAAMAEEHGDGAVWAAVSHGDTIKAILADALGMHLDLFQRLSVGPASVSIIRYGAGRPEVVAMNTDAGDLSWLRKAAPVADAAVGGGAGHE
>NZ_CP047183.1|WP_104225051.1|616005_616539_-|DUF3090-domain-containing-protein
MPPIVHGFDWPDRVVVGTVGSPGSRSFYLQAKTGPRVVSVGLEKQQSALLAEKIDEILDQLMTAQGNPVSVPAGTPPELVDNDPLDQPVEPEFRVGGLSLGWDPSTAQIVIEAYPLTEAEDDSEEEPEPTEMLQVKIPVGTARAFAKRTLEVVGAGRPLCPRCGEPMDPDGHDCPLA
>NZ_CP047183.1|WP_159912519.1|615244_616009_-|SCO1664-family-protein
MSDPGGLDGELELAGRITIASNATFLAQLGETSVVYKPISGEKPLWDFPDGVLAGREVAAYLVSEALGWNVVPRTWLRDGPLGPGMVQLWQDIDPDQDAVDLVPADTVPDGWRHVLDGSDEEDRDISLVHEDSTALRRMAVFDVVANNADRKGGHVLALPDGHRYGVDHGLTFHSEHKLRTVLWGWIGEPLLEEELAALALLRAQIDGPLGEALSELLTEDEVAAFAKRCERLGSSGRFPGPRGGMPAVPWPLF
>NZ_CP047183.1|WP_159912517.1|613097_615146_+|hypothetical-protein
MADAPRGNRRLKRDARYAKYDGGPDPLAPPVDLKEALDAIGEDVMGGTSPERALREFLRRGTRDREGLDDLAARVAERRRELTQKNNLDGTLREIRELLDKAVLAERKQLARDTQMDDGDRALAEIQLDSLPPSPAAAVSELSDYRWQSPEARADFERIRELLGREMLDQRFEGMKQALENASDEDRAAIDAMLRDLTELLEAHARGEDTPEQFDAFMEQHGEYFPEGPESVDELIDALAARAAAAQRMRNSMTAEQRAELDALAQQAFGTPELMQSLGRLDETLRGLRPGEDWGGSERMDGEQGLGLGDGTGVFQELADLDALADQLAQTDRSSLDDLDLDLLAKRLGEDASVDAQTLKRLERALRDSGTLRRNSDGRLALSPKAMRQLGKALLRDIAETVSGRQGARDVRRAGAAGERSGATRAWEFGDTEAWDIPRTVTNALTRTAGEGRPVGSGVRIRIDDVEVQETEARTQACVALLVDTSFSMAMDGRWVPMKRTALALHTLISSRFRGDALQLVAFGRRAEVMDVEQLVGLDAEWDKGTNLHHALLLANRHFRKHPNAQPVLLIVTDGEPTAHLEPDGGVFFDYPPDPLTVAVSVRELDASLRLGAHTTFFRLGDDPGLARFIDSLARRVGGSVVNPEAEDLGAAVVSSYLGARGAGPGGGGSPGEELFGRGWSF
>NZ_CP047183.1|WP_159912515.1|611722_613105_+|magnesium-chelatase
MRPTPQTLGQLRASGHVQKSLRTEIRDNLLDALREGRDPWPGLHGFAETVIPQVERAVLAGHDIVLLGERGQGKTRLLRTLVGLLDEWTPVIEGSELGEHPYEPITTESRRRAQELGEDLPVAWKPREERYVEKLATPDTSVADLIGDVDPMKVAEGRSLGDPETIHFGLIPRSHRGIVAINELPDLAERIQVAMLNVMEERDIQIRGYVLRLPLDVLVVASANPEDYTNRGRIITPLKDRFGAEIRTHYPTALVDEVAVIRQEADLVATVPDALIEILARFTRALRESSSVDQRSGVSARFAIAGAETIAAAALHRATRRGEEEAVARPIDLETAVDVLGGKIEFESGEEGREDEILDHLLRQATAETVRAHLRGVDLGPLVEAVENGAMITTGEQVTAREFLAGLPLLGEARVYDEVAERLDAVGEGRRAGAVELALEGLYLSRKLSKETGGGEAVYG
>NZ_CP047183.1|WP_159912513.1|610520_611579_-|PQQ-dependent-sugar-dehydrogenase
MTNRTGLAAAALALGALLASCSAAPPSAPLPSGADAPRAVAEGLEAPWSVAFADGVPLVSERDSGRILELAEDGTTRVIGVVDDVVAEGESGLLGLAAAGGVLIAYSTGPDGNRLQRFDLTGSAGSLGLGPARTILDRIPAARTHDGGRIAIGPDGLLYATVGDAGRREAAQDPESLSGKILRMTLDGEAPADNPTPGSLVYSLGHRNPQGLAWSADGTLFASEFGQDTWDELNIIEPGANYGWPVVEGAAGEEGFADPVQQWTPDEASPSGMAVVDEVLYLANLRGEVLRAVPVADPSTSTDYVRGEYGRLRDAVAAPSGDLWFVTSNTGGRGSPGNADDRILSVPPPRAD
>NZ_CP047183.1|WP_159912511.1|608741_610301_+|ATP-binding-cassette-domain-containing-protein
MSAVVVEGLRVAFDGVEVVHGISFRVEPGECVAIVGESGSGKSVTARALLGLSGGAVTGSVRVGGTEVVGAGERELRRLRGGSVGFVPQDALLSLDPLRPIGREIGDVLRLHGRLPAAERAQRTVEALASVGMPEPAERMRERSGDLSGGLRQRALLAAAVALDPPLLVADEPTTALDVTVQARVLELFAEQKARGRALVLVSHDLAVVAGLADRILVLADGRVVEEGTAAEVLRAPRSPEARALVAAVPAGRPRGSRLTDPSAPILPPAAAGETVLAARGLSARFPLAGGGVRTAVDGVDLELRRGETLGLVGESGSGKSTVARLLLALRRPDAGTVELSGEPWSAATERSRRPRRPRIGAVYQDSLSSFDPRWSVGRLLRDAGAASVPELLESVGLDPALERRSPRTLSGGQRQRVSIARALATRPDVLICDEPVSALDVSVQAQILDLLDDLQRRHGLALLLISHDLGVIAHMSDRIAVMREGRIVETGPAASLLAAPQEDYTRRLLAAAPRLDRG
>NZ_CP047183.1|WP_159912509.1|607905_608745_+|ABC-transporter-permease-subunit
MSELELRAARPLRRGASRLRAGEVLAAVFVVLLLLAAVAPGLLAPSDPLAVAPRDAFAPPGAAHLLGTDESGRDVLSRLIAGAGASLLIGASATAIGLVLGAVLGVVAAFGGRVVDGVIGRVLEVLFAFPALLLALLVIVVTGPGVVPATIAVGLSTAPGYARILRTRLLGIRDSGYVEAARVLGHGPVRILVRHVLPNTFGPLAVLATLGVGQAIVWASALSYLGLGAEPPAPEWGAMLSAGRTYLASAWWLTVFPGLAIVLTTIATTVLGGRLRGAR
>NZ_CP047183.1|WP_159912527.1|620711_621197_+|2'-5'-RNA-ligase-family-protein
MRSLEVLLDPESEARVRSQWEALEAAGIPSLALHTSASNRPHLTLVAGPELTAPEPGALGPVPATADLGAVLLFPHAGRFVLAWGVVRSPALDALHARATRLVPGGVGTSLPDAWTPHISVSRRLRAEQLGDAVPLLGEPFTVGLAGVRFWDGDSRTLTDL
>NZ_CP047183.1|WP_159912529.1|621323_623459_+|DNA-helicase-RecQ
MTEPTATALPAPPLADPSADSRGGVGSDAASGTPGFGSSEAQAILEKVFGYGSFRGEQQAIVEQVIGGGDAVVLMPTGGGKSLCYQIPAIVRPGTGVVVSPLIALMQDQVDALRANGVRAEFLNSTQDAGERSRVERAYLDGELDLLYVAPERLGNEGTKQFLARGRIALFAIDEAHCVSQWGHDFRPDYLALGELAERWPDVPRIALTATATEATHREITSRLHLGAARHFVSSFDRPNIQYRIVNKVEPRKQLIDFLRREHAHDAGIVYALSRKSVEATAEALRSAGFDAVAYHAGLDSRVRAAAQSRFLREEGVIVCATIAFGMGIDKPDVRFVAHIDLPKSVEGYYQETGRAGRDGLPSTAWLAYGLQDVVQQRRMIDESPGDLAHRRRMSAHLDAMLALSETVQCRRVNLLAYFGQESTACGNCDTCLEPPASWDGTVAAQKFLSTVVRLKRERNQQFGAGHIIDVLRGKTTPRTTQHQHDGLATWGIGADLSDTQWRGVARQLLAQGLLGVNDDGFGTLVLTPASGSVLSGERKVELRQEPEKPARSSGSSRSGRSTVAELSGEAQPLFERLREWRAAQARAQAVPAYIVFNDATLREIATAEPATMDALSIIGGVGQKKLLTYGEAVLAVVAGESPEIAVPEPGEEAPAPRRAPAARGGSSRSGGAKPSFGRESAGPPVSAAQPPEDDWVPPDEPDWEPGWDSY
>NZ_CP047183.1|WP_159912531.1|623586_624093_-|hypothetical-protein
MSEPPLPPPPPPRPPLRAPQALPQEVAVPPEPRPQQEGRAAQAGSVPQEAVAQAGPLRPPRRIWDLALTIVLILAAAAATLGLSFVGLFFGLAGDACMGSNVCRPGWIEAGVLLAGFGVWLPFLAALIVAVVRLVRRRLAFWVPVVGLALSFSCTLLGAWLAGVGSGS
>NZ_CP047183.1|WP_159912533.1|624390_626535_+|acyl-CoA-dehydrogenase
MVSTAPHPRSAADAADRAATGRTRARRSRSGSIAPTPPVDSLGSEVDARLDEDGAPAVDVAALGETLLGAWREQRLASRALTARPELHRTDGLPMKEHRLRVSEQMHVLAAEGGVHRAFPVDLGGEADHGGNIAGFEELVTADPSLQIKSGVQWGLFGAAVLHLGTRPHHEKWLPGIMSLEIPGAFAMTETGHGSDVASIATTATYEDGEFVLRTPFRAAWKDYLGNAAVDGRAAVVFAQLVTRGVNHGVHAFFVPIRDEQGAFLPGVGGEDDGLKGGLNGIDNGRLHFDGVRVPRENLLNRYGDVAADGTYSSPIASPGRRFFTMLGTLVQGRVSLDGASVAAAKIALTVAVTYGDQRRQFTGGGEREEVLLDYQRHQRRLLPRLATTYAAAFAHEKLLTAFDEVFSGANDTEQSRQDLETLAAGLKALSTWHALDTLQEAREACGGAGFLAENRLTQLRADLDVYATFEGDNTVLLQLVAKRLLTDVGRRFKGAQPAELARYAASQVAGATVDNSGLRRLAQVVADRGSTARSVGQLREDQRELLTGRVESMVAGIASGLRPASKLPSDEAARLFNAHQSELIEAARAHAELLQWEAFTEALAGVEDAGTRTVLTWLRDLFGLGLIEKHLDWYLIHGRLSSQRAVAVTSYIDRLLARIRPHAADLVAAFGYGPEHVRAAIATGAEAERQEEAHAWYEAARASGTLPTPEKRR
>NZ_CP047183.1|WP_159912535.1|626628_627612_-|malate-dehydrogenase
MNQQRTPVTVTVTGAGGAIGYALLFRIASGQLLGPDVPVRLNLLEIPSGLRAAAGTALELQDGAFPLLRGIEATDDPAAAFDGASVALLVGARPRSAGMERADLLAANAGIFGPQGAALNAHAASDIRVLVVGNPANTNAWIARRSAPDIPAGRFTAMTRLDHNRALAQLAAKLDAPVDAIEGVAIWGNHSASQYPDATHATVDGRPVPELVDAEWLHTEFEPRVAKRGAEIIEVRGASSAASAASAAIDHVRDWVDGTEWTSAAVESDGSYGVEEGLISSFPVRSVDGEWRIIEGLEIDAHSRARIDESVLELRAERDQALAFLAS
>NZ_CP047183.1|WP_159912537.1|627652_628552_-|substrate-binding-domain-containing-protein
MSAGATTAEAEQEVVTTECAERPGVIGVLLGDFEPFGTEVLQGVATALRGTRFDLLAGSGGSRRGRAGWEHESLRRLAEARVEGAILVTPSGVITSSDLPLVVVDPLTAQTELHSVATDDFGGAQLATSHLIGLGHRRIGFVAGRPDLESSHRRGAGYQRALADAGLSYDPALVRVGYYRHDPSLVAAHELLLLPDRPTAVFAANDASAIAVIEAARALGLSVPGQLSVVGYDDVPDASRVVPALTTVRQPLHRVGRAAARALLTLIDGGSVAEPHVRLRNKLVLRGSTAPPAEGSGPG
>NZ_CP047183.1|WP_159912539.1|628961_629603_+|hypothetical-protein
MSTRRTPRPLWLVRSGAALAGCLLLSGVAAAAAAADTEFGSDAVDVKVSIAELEQPGLLSMSVDGTESTLTEQGSTPTVRTFTGQLPEVTVTDTRTADEIADDAGWYVLGSASAFTGDADQEDITADHLGWTPTLLDGGDSGLVAEGDQVDTVLDEGDDAVGLLDQELLALSLDSQETATDGSWTVSADLTLKTEADVEPGDYSSVLTLSLFE
>NZ_CP047183.1|WP_159912541.1|629599_632497_+|family-43-glycosylhydrolase
MTRLRAVASTAIGALLATGLLASAAPATAADAWSPKASYTSTDKGDGTYSVPLLNADVPDVSVERVPASENDEGRDIYYMISTTMHLSPGAPIMKSYDLVNWEIVNYVFDRLEIGDRFSLRNGQNSYGNGQWASSLRYHDGRYYAVFNTNNLGGSYLYSTDDIEDGVWTRTALGRAFHDPSLFFDDADGGTPYIFYGSGSTSAVKLSEDLTTVVAEYPNILRTSDYPGAGYLGGLFEGAQVQYIDGQYYIVIITWPSGQGRQVALFRSSELLGRYATADGSNPYEGKGVLNSSGFAQGSLVPIAKEDGSTAWHGMFFRDSFPTGRIPGLIPATWKDGWPTFGTNGSVPVGGSFPKPIRLSPEEELFERQKSIVVSDDFDNDAPAKAYQDESWTIPPAPAYDPSLLGVQLLQNPGAESGTAPWAGQFGATLSADTTDPASGTSALRVGTRTLNGSGPSQVLANKLQRGVTYTVSAKVKYTTGPASVRFNLCADFGAGPVTMASAAVTQGQWTTITGTYTVPETANIGSVKFAVETPWGNPQPASSSTEYLLDDVSLVGAAPTVERPTVAEIEPNGSNLALPWQWNHAPDNRYWSLTEREGWLRLTNGKVLSGTAAHTRLSGSPEMTYLEEARNTLSQRIVAPKQSAEAAFDVSGMKDGDVAGLAAYNRGFSYVAVKRVDGVNTVGVVNRSQPFATTFDQAAVESFLPGTTAALGDASQVRLKADLELSAPAGQLWTTFSYSLDGTSWTKLGSRVGPQTLDGQLTHFMGHRLGLFSYATKTAGGHVDVDEFLLSDTLSSEGKALDRSQLDAAIAHAATLRSGDYPADAWSDLQSVLAKAQAVGTAGSQNQIDAPERALSYQLARLGTLKEASLEVTAAAATRCIAGKVVVTVRATNADDVPVALRMESASGTKTVAALAPGATTSHAFTTRAASVPAAEVVVTATATLDGEPVTTTVRAPHPAASCG
>NZ_CP047183.1|WP_159916811.1|632634_635016_+|family-43-glycosylhydrolase
MRLRLLATAALTALLVAPFAAQTSSAAETELIVNGGFESGISSWFVNNGNAADAGTIATTTDARTGTAAALVSGRTTTGAGAMQDLSGKVTAGQTYQVKAQIKYENAASPATKQFFATMHYGGGTYTNLASVTATKGQWATINGSFTIPAGQSVATARLFFETPWTATPSAAPETHLMDYKLDDVSLVGAAPAAPASRTIEVVGKIPGDHNPLMGWKFGADGFGFVENGRVYMYMTNDTQGYAPNPATGVSAGIDYGKINQITVISSDDLVNWTDHGEIQVAGSTGVAPFTGNSWAPGMAKKTVNGVDKYFLYYANGGGSSNVITGDSPVGPWTSQRTSTLINASTPGAEAVAWKFDPAPLIDDDGQGYLFFGGGPASTALPAAERFNNPKNIRVIELGDDMISTEGTSAVVDAPVAFEAAQVFKRQDKYYLSYSSHFGGNDFGGNQTREPGYPGGGEIGYMISDDPMSWPKEAYAGVMFPNQSRFFGAGTGGNNHQSVFEMGGKYYFTYHAPTLNKRINGDTTQGYRSPHIQELQFNADGTVKQVVGDYKGVDQVKDFDGYRTFPAETIGWSKGIATAPIGTPAAGATQNLVLKDLDNGDWTALSAVDFGDTGAATFTAKAKALQAGGSITVRLDSETGPVAGTVAVNGTTGEWTDVSAALTGATGVHDVYFSYSGPTGDLFELDTFAFTEGEAAPALDITASAATRCIAGKAIVTVQATNGSDVPVGVTFTSTSGTKSFTSVAAGKTVSHAFTTRQANLPAGAVTVDATATMNGAPVETEVSAPYAARPCS
>NZ_CP047183.1|WP_159912543.1|635161_636109_-|LysR-family-transcriptional-regulator
MDLEQLTGFVEVARLGSFTRAAEALHLAQPSLSRRIAALEQDLGSELFHRARSGSTLTPAGELLLPLARRMLADAGSVRRELAELAGLERGRVRFGATPTLCISLVAEVLHAFHAAHPAVELHLAEDGSRSLFDRLARGELDLALVTTSTAAAPGAFTVTPLLVEELVVVSSAAEPPLAATGALDLAAVARLPQIVFNSSYDLRRTTDAAFSAAGLEPDVVLEGAEMDAVLRFAERGLGVAVVPAMVLQGRPGLRSIRIEEPTLEKPTLTRTISLARPADLAPTAAARVMQRTIAATARAFAAQAGGTMRLAGTR

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Crispr_ID: NZ_CP047183_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047183_5

1925035-1925223

Orphan

Consensus_repeat	Method
GCCCTCGAGGCCGAGGTCGCC	CRT

3 spacers

The CRISPR arrays of NZ_CP047183_5

>merge|NZ_CP047183|5|1925035-1925223|CRT
GCCCGCGAGATCGAGGTCGCCCGGGCCGAGGCAGCCCGCCTCGCCCAGGCCAACGAGCTCCTGCGGGCCGAGGTCGCCTCCGAGGTCGACCGGCTCCGCGCGGCCGTCGAGGCCGAGGTCGCCCAGGCGCGCTCGGCGGTCGAGGCCGAGGTGCTCTCGACTCGCGCCGCGCTCGACGCCGAGGTCGCC

>NZ_CP047183|5|1|1925035-1925223|CRT
GCCCGCGAGATCGAGGTCGCC	CGGGCCGAGGCAGCCCGCCTCGCCCAGGCCAACGAG
CTCCTGCGGGCCGAGGTCGCC	TCCGAGGTCGACCGGCTCCGCGCG
GCCGTCGAGGCCGAGGTCGCC	CAGGCGCGCTCGGCGGTCGAGGCCGAGGTGCTCTCGACTCGCGCC
GCGCTCGACGCCGAGGTCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047183.1\|WP_159914315.1\|1932638_1933466_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_CP047183.1\|WP_159916997.1\|1916499_1918716_+\|DUF3416-domain-containing-protein	unknown	unknown	gnl\|CDD\|200482
NZ_CP047183.1\|WP_159914307.1\|1925886_1926612_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|225496
NZ_CP047183.1\|WP_159914301.1\|1921419_1922379_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|225660
NZ_CP047183.1\|WP_159914299.1\|1918712_1921343_+\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445
NZ_CP047183.1\|WP_104223894.1\|1931771_1932503_-\|UMP-kinase	unknown	unknown	gnl\|CDD\|234735
NZ_CP047183.1\|WP_159914309.1\|1926951_1928700_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NZ_CP047183.1\|WP_159914303.1\|1922375_1924172_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047183.1\|WP_159914311.1\|1929551_1930103_-\|DivIVA-domain-containing-protein	unknown	unknown	gnl\|CDD\|188337
NZ_CP047183.1\|WP_159914297.1\|1913701_1916275_-\|alpha-glucan-family-phosphorylase	unknown	unknown	gnl\|CDD\|340852
NZ_CP047183.1\|WP_159916995.1\|1908634_1909738_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP047183.1\|WP_159914293.1\|1911084_1913157_+\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|200465
NZ_CP047183.1\|WP_159914313.1\|1930165_1931104_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_CP047183.1\|WP_104272925.1\|1933647_1934595_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NZ_CP047183.1\|WP_104232499.1\|1931184_1931739_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_CP047183.1\|WP_159916999.1\|1926608_1926845_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047183.1\|WP_159914291.1\|1909796_1911086_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|224029
NZ_CP047183.1\|WP_159914289.1\|1906139_1908638_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP047183.1\|WP_159914295.1\|1913156_1913639_+\|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl\|CDD\|237976
NZ_CP047183.1\|WP_159917001.1\|1928759_1929500_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|275060

Protein	Function_ID	Function_description	E-value
NZ_CP047183.1\|WP_159914315.1\|1932638_1933466_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	1.44519e-114
NZ_CP047183.1\|WP_159914307.1\|1925886_1926612_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	2.86611e-16
NZ_CP047183.1\|WP_159914301.1\|1921419_1922379_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|225660	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones].	1.21828e-42
NZ_CP047183.1\|WP_159914299.1\|1918712_1921343_+\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
NZ_CP047183.1\|WP_104223894.1\|1931771_1932503_-\|UMP-kinase	gnl\|CDD\|234735	PRK00358, pyrH, uridylate kinase; Provisional.	7.75049e-131
NZ_CP047183.1\|WP_159914289.1\|1906139_1908638_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP047183.1\|WP_159916997.1\|1916499_1918716_+\|DUF3416-domain-containing-protein	gnl\|CDD\|200482	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins. GlgE is a (1,4)-a-D-glucan:phosphate a-D-maltosyltransferase, involved in a-glucan biosynthesis in bacteria. It is also an anti-tuberculosis drug target. GlgE isoform I from Streptomyces coelicolor has the same catalytic and very similar kinetic properties to GlgE from Mycobacterium tuberculosis. GlgE from Streptomyces coelicolor forms a homodimer with each subunit comprising five domains (A, B, C, N, and S) and 2 inserts. Domain A is a catalytic alpha-amylase-type domain that along with domain N, which has a beta-sandwich fold and forms the core of the dimer interface, binds cyclodextrins. Domain A, B, and the 2 inserts define a well conserved donor pocket that binds maltose. Cyclodextrins competitively inhibit the binding of maltooligosaccharides to the S. coelicolor enzyme, indicating that the hydrophobic patch overlaps with the acceptor binding site. This is not the case in M. tuberculosis GlgE because cyclodextrins do not inhibit this enzyme, despite acceptor length specificity being conserved. Domain C is hypothesized to help stabilize domain A and could be involved in substrate binding. Domain S is a helix bundle that is inserted within the N domain and it plays a role in the dimer interface and interacts directly with domain B. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP047183.1\|WP_159914311.1\|1929551_1930103_-\|DivIVA-domain-containing-protein	gnl\|CDD\|188337	TIGR03543, divI1A_rptt_fam, DivIVA domain repeat protein. Members of this protein family contain two full and two partial repeats of a domain found at the N-terminus of Bacillus subtilis cell-division initiation protein DivIVA. The portion repeated four times in these proteins includes the motif GYxxxxVD.	3.78781e-59
NZ_CP047183.1\|WP_159914297.1\|1913701_1916275_-\|alpha-glucan-family-phosphorylase	gnl\|CDD\|340852	cd04299, GT35_Glycogen_Phosphorylase-like, proteins similar to glycogen phosphorylase. This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism.	0
NZ_CP047183.1\|WP_159916995.1\|1908634_1909738_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	4.65669e-179
NZ_CP047183.1\|WP_159914293.1\|1911084_1913157_+\|glycogen-debranching-protein-GlgX	gnl\|CDD\|200465	cd11326, AmyAc_Glg_debranch, Alpha amylase catalytic domain found in glycogen debranching enzymes. Debranching enzymes facilitate the breakdown of glycogen through glucosyltransferase and glucosidase activity. These activities are performed by a single enzyme in mammals, yeast, and some bacteria, but by two distinct enzymes in Escherichia coli and other bacteria. Debranching enzymes perform two activities: 4-alpha-D-glucanotransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). 4-alpha-D-glucanotransferase catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. Amylo-alpha-1,6-glucosidase catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. In Escherichia coli, GlgX is the debranching enzyme and malQ is the 4-alpha-glucanotransferase. TreX, an archaeal glycogen-debranching enzyme has dual activities like mammals and yeast, but is structurally similar to GlgX. TreX exists in two oligomeric states, a dimer and tetramer. Isoamylase (EC 3.2.1.68) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen and their beta-limit dextrins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP047183.1\|WP_159914313.1\|1930165_1931104_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	5.64676e-50
NZ_CP047183.1\|WP_104272925.1\|1933647_1934595_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	1.75341e-157
NZ_CP047183.1\|WP_104232499.1\|1931184_1931739_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	8.34656e-89
NZ_CP047183.1\|WP_159914291.1\|1909796_1911086_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	1.24853e-134
NZ_CP047183.1\|WP_159914309.1\|1926951_1928700_-\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	2.08297e-63
NZ_CP047183.1\|WP_159914295.1\|1913156_1913639_+\|Cys-tRNA(Pro)-deacylase	gnl\|CDD\|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	2.39668e-73
NZ_CP047183.1\|WP_159917001.1\|1928759_1929500_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|275060	TIGR04216, halo_surf_glyco, major cell surface glycoprotein. Members of this family are the S-layer-forming halobacterial major cell surface glycoprotein. The highest scores below model cutoffs are fragmentary paralogs to actual members of the family. Modifications include at N-linked and O-linked glycosylation, a C-terminal diphytanylglyceryl modification, and probable cleavage of the PGF-CTERM tail.	0.00082129

>NZ_CP047183.1|WP_159914303.1|1922375_1924172_-|hypothetical-protein
MRFVFAIIATVIAAAMIVLGIGQRTVWAPPESLTAETALDSSAPYAVIGGSTLGANPGRQTITVEGSGDLVVAYAPTSDVLGWVGGSSYDAIGYERADDTLTSAEETGERVQLSSDVETADAAVVDPRGSDLWLEQFEGSGSVTLALDVPEDVSILIASDGTAPAADSVRVSWPVDTATPLAGPLLLGGAVFLLLGLVLYIWAFVHLRRQHGPRRKGPQGRIPRGARRPRPRAGIQASTASPAPSRRRAALVLPVVLGTTVLLSGCSSDYWPDLAAGASEAPTATATATAGAEPVSAEPTPVVTTQQAEDIVAEVADVASRADAARDAGILAERFQGEALTERTTNYDVVAKGGTIDPPQTIPASPVSLVLPQDTESWPRLVTAVVQNSADTTQAPIALMMSQASPRVDYKVDYAISLEANARIPDVAPVTVGTSIVAPDSRLMKLAPQTVGSAYADVLANGDSSQYAELFAADGDTLRGQVGVDKKNADREALPDTASIEFSNAAGTSPTIALATNDSGALVAASIAETSTVRPTAEGSTVSTSGASQTLLGTDKSTTGIETTYGYQLLFYVPPVGSEEKIVMLGWSQGLVSVVQLP
>NZ_CP047183.1|WP_159914301.1|1921419_1922379_-|tetratricopeptide-repeat-protein
MSTVPPLPGNLRGAVDLSSLVNRRTPPAAAGSPAAPAAPGGAPGGNPLLLTAGDAEFDQVVQLSSRVPVIVDLRGSWSDQSQSMTALLEKVVVSYAGAFVLVGVDVESSPQLAQAFQVQSVPTVAAIIGGRPVPLFSGLVAEEQLRDLLDQVLQLAAQNGVTGTVPVEGAAPAEGAEPEPEPLPPHHQEAYDAIDRGDYAAAITEYETAIAQNPRDDLAVAGLAQVRLLARLQGRTLDDIRSTAAAEPSNLDAQLAVADLDVSGGHVEDAFDRLLSMFPRLDADGKAAVRARLLELFEIVGQADPRVTKARARLTGLLY
>NZ_CP047183.1|WP_159914299.1|1918712_1921343_+|1,4-alpha-glucan-branching-protein-GlgB
MSGTTPEGTSPAEEAGLGAHAETVPTTGTSSATTSGRGAHVAEAAPDAPQHPGGDGENARSYAVETVPEAPQPDTADDAATEQPDAAEDADSAPVGSGSEDALHDDAVSASSDAADSVAADSAAPVETTAGSDGTTADPASAAGSVDGTAAIALPDIPEWVLQQLATGSNALPHDVLGQHLVAAPGVSDPVTVVRVRRPLAEKVAVVLATGARVELSHLSDGIWQGFHILGPQAYTVEARYSGGGEWTAEDPYRFSKTVGDFDLYLIGEGRHERLWEALGARHREHEGVWGTSFAVWAPHAQAARVVGDFNDWSGEGHSLRNLGTTGVWEIFVPGVEPGASYKFDLLSRDGHWVRKADPMARATEVPPATASKVPVSHHQWRDSGWMEKRASVDPHTQPLSVYEMHLGSWRPGLGYRDLADPLIEYVTELGFTHVEFMPLAEHPFGGSWGYQVTGYYAPSSRFGTADDLKYLIDRLHQAGIGVIVDWVPGHFPKDDFALARFDGEPLYEHPDWRRGEQMDWGTYVFDFGHTQVRNFLVANALFWLEEFHVDALRVDAVASMLYLDYSRKEGEWLPNQYGGREHLEAISFLQEVNATAYKLHPGIMMIAEESTSWPGVTQPTSSGGLGFGLKWNMGWMHDSLDYMANDPLWRQYHLGEITFSFVYAFSEKFVLPISHDEVVHGKGSLIQKMPGDHWQQLANVRAYLAFMWAHPGKQLLFMGQEFGQYSEWSEERGLDWWILDQPSHRGLSSLVGQLNRVYRDSPSLWELDHEQAGFEWIDGGAAAANVVSFLRKDSEGRPIAVIANFSGSPVHGYRVSLPTAGRWEELVNTDAEIYGGSGVGNFGAVDAREEPWAGRPASAELVLPPLAVLYLRPAD
>NZ_CP047183.1|WP_159916997.1|1916499_1918716_+|DUF3416-domain-containing-protein
MPFGKAQNGKDARRAGRGRAPQEASAPPETAAPAPAAAPEAAPAPPAADSAPAAPLTADAPDVSPAPATTGSGYRVRAERLPIIDPQPRLEDDRWPAKAFVGEVVPFAATAFREGHDLIGVDLLLSSPSGAESEHRMSLLATGTDRYGRLVALDEEGDWSYRIRAFADDWATWLHTAEVKIPAGLDIDVTFAIGEGLLRSGADDSSRPESERSLLSDTAARIGDASLSTEERLAAATGPAVHGALDARPVMSLTSVSEPRTVHVERTRAGVGAWYEFFPRSEGAVRHEDGTVTSGSFRTAIDRLPAVAAMGFDVLYLPPIHPIGRSFRKGPNNTLDAGENDPGSPWAIGSAEGGHDAIHPDLGTEDDFRAFHAAVEDAGLELALDFALQASPDHPWVTSHPEWFTTLPDGSIAYAENPPKKYQDIYPINFDNDPEGIRQESLRVLRHWIDLGVRIFRVDNPHTKPLDFWEWIIHEVNAEHPEVVFLAEAFTRPAIMRALGKVGFQQSYSYFAWRNTKEELGEFFTSISHETADYMRPNLFVNTPDILTEYLQYGGRSAYKVRAALAATASPLWGVYAGYELVENVARPGAEENIDNEKYEYKTRDWAGAEESGRSLAPYITRLNEIRRSHPALGQLRNLHVHGSDDDAILVYSKHLQAAFTGTGTDDTIIVVVNTDPHSARETTVHLDLPAIGLDWSATFEVEDLITGAVWTWGSDDYVRLDSFVEPVHILSVKADER
>NZ_CP047183.1|WP_159914297.1|1913701_1916275_-|alpha-glucan-family-phosphorylase
MKAIRRFIVRSVLPPELSALGDLAGNLRWAWHEPARRLFERVDPELWRRGGADPTALLGAVSPERLAELAGDQGFVDEAWRLRDELERYRAEPRWYQSLPESAPRSIAYFSPEFGIAAALPQYSGGLGILAGDHLKASSDLGVPLTGVGLFYRSGYFSQKLSADGWQVESYPSLDPDGLPLRVVRLADGSPARIVLALPEGRALYARVWRAEVGRVTLLLLDTDIPENEDSLRSVTDRLYGGGGEHRLLQELLLGIGGVRALELWAEVSGGALPEVFHTNEGHAGFQGLERISGLIGAGLDFDQALQVVRASTVFTTHTPVPAGIDRFDRGMIEEYFSTELLPGVQVEDVLALGAEPGDSGTAFNMAYMGLRLAQRSNGVSTLHGEVSRSMFSSLWPGFETAEVPIGSVTNGVHAATWTDPILRRLAEERLGTDDTTTADWASGALGDTELWAARRAMREQLVQDARRRAARSWREQNPGGLPPAWLDELLDPDVLTIGFARRVPTYKRLTLMLHDPERLRALLTHPQHPIQIVIAGKSHPADEEGKRLIQRLVRFAQEPDVRRRIVFLPDYDIAMAQLLYPGTDVWLNNPLRPLEACGTSGMKAALNGSLNLSILDGWWNEYFDGENGWAIPSSDRALDPEARDTLEAEALYELLETEVVPRYYERDHDGVPRRWVRSIRHTLATLSPELSAERMVRQYVEALYSPAAEAGRAVAADHFEPAKELANWKRRVRAGWPGVAVASVESGGIDAVPQRGDRLAVRAGVRLGELSPEDVSVEVVYGTTSADGSLTEVRHHELEVVEESGAVVPADAVGRVPYAGVVTLDRSGSFGYTVRVVPRHPLLARSAELGLAAAAG
>NZ_CP047183.1|WP_159914295.1|1913156_1913639_+|Cys-tRNA(Pro)-deacylase
MARSGPGTPATVALTAASIPFTAHEYRHDPATTRYGLEAAEALGVEPERVFKTLVVDVDGELVVGVVPVTGSLGLKELAAAVGGKRAAMADPALAQRRTGYVLGGISPLGQRTRHRTVIDETVELHDTVLVSGGRRGFDIELAPADLVAATSALLADIAR
>NZ_CP047183.1|WP_159914293.1|1911084_1913157_+|glycogen-debranching-protein-GlgX
MTSHDPLARLGVTVDDQGGGLRVWSESASAVDLLLYDEKDPTWVTRTVPLTRDDDAVWSARSDLLAPGRRYALRVDGPTGPRHRFDPRRALLEPYSRGLHRVAENEWRSVVVDDAFDWGSSSQPGTSMDRTVIYEAHVKGLTRLNPALPVELRGTYAGLAHESTVSALLELGVTAVELLPVHAFVSEQRLLRQGLTNYWGYNTLNFFAPHAAYASSTAQRGGPTAVLREFKGMVKLLHEAGLEVILDVVYNHTAEEGPGGPMSSLRGIDDAGWYRQTPEGHYVDVTGCGNTIDFGRPAAQRLALDSMRYWSGEVGIDGFRLDLAATLGRDEIAHFRSDHPLLRAAVEDPALAGVKMIAEPWDVGMGGWQTGNFPAGWSEWNDRYRDRARNFWLSDIDYARRAGTAPVGIGGFATRLSGSSNTFSAERGPLASVNFVTAHDGFTLADLVSYNVKHNIGNGESNRDGADTNRSFNHGFEGPTTDERITQARRKAMRNLLGTLLLSAGVPMITAGDETGRSQRGNNNAYCQDSDLTWVRWEGLADWQLALRAHTRTLLRLRREHPALRPSRYGSGDASEPGATSMTWFDAHGRGMSEHDWTSAANRTLQYLAASTPVEGEPDRVLLVVHGVEQDTAVVLAEGEGITGYTRLWNSEEPEPLEHGESFEPGQVIRVAGTSMQLFAAHGPAAEQDA
>NZ_CP047183.1|WP_159914291.1|1909796_1911086_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MRLTVVTGTGSLRAPDAGRRAAVIYLDHAATTPLRASALAAFAEASAHAGNPSSVHGSGQEARRRLEDARSALAGVLGCEPIEVILTAGGTEAVNLGIKGLYWQRRSEDPGRVRVLVAEGEHHATLDSAAWLAEHEGAVLEWLPLDDEGTLRPEALAAALEEDPASVALVTVLWVNNEIGTINPIGELAAVCARAGVPLHVDAVAALGHVPLRIAEIRRASGSGRGAGLAAVSVSGHKVGGPIATGALVLARDARVVPVLHGGGQQRGVRSGTQDVPGAAAFAAAAVEADAELPAEAQRLAALRDRLVAGVLAAVPGATLTGPALDSGRRVAANAHLAFPGAQGDSLLFLLDTAGVSVSTGSACTAGIPEPSHVVLALGRSEDEARGVLRMTLGHTSTDADVDALLAALPGAYARAARAGLSNRAVLPA
>NZ_CP047183.1|WP_159916995.1|1908634_1909738_-|tRNA-2-thiouridine(34)-synthase-MnmA
MSGGVDSAVAAARAVEAGHDVVGVHLALSRMPGTLRTGSRGCCTIEDSMDAQRAANVLGIPYYVWDFSERFKLDVVDDFVAEYSAGRTPNPCMRCNERIKFAALLEKALDLGFDAVCTGHYASLRTAGDGSPELHRASDEAKDQSYVLGVLTEQQLRHSMFPLGSTPSKAIVRAEAAERGLSVASKPDSYDICFIPDGDTRGWLAERVAPATGAIVDRDGAVVGSHEGAHGYTVGQRRGLHLGVPAPDGRPRFVLEVRPVSNEVVVGPREALRIGEIAGERFTWAGAAPEDADAPFRCDVQIRAHADPVPASAVVSDVDGRVELVITPDSPLDGVAPGQTAVVYLGTRVLGQCTIDRTVAADAAVLR
>NZ_CP047183.1|WP_159914289.1|1906139_1908638_-|NAD-dependent-DNA-ligase-LigA
MSAVEPAARVEELRARIRSASDDYYAADSSPLSDAEYDALVRELAALEAEHPELGAEDSPTQTVGGIVGAGLAPIYHAERMLSLDNVFSAEELREWCEKTVASADRPVAWLTELKIDGLAISLHYEHGRLVTAATRGDGRTGEDVTVNALRVAGIPERLSGEGHPALVEVRGEVFIPVAAFAELNALQETLRDEAVEEARARWSSRPAATRGAFEEEKARTSALRRFPTFANPRNAASGGLRQQLDKKSGLDLRAGEARVGSLALYVHGIGAWPDPPVATQSEVYGLLSSWGLPVSGHNRVSASVEEVLAFVERFGRERHSVEHEIDGVVVKVDELELHDELGATSRAPRWAIAYKYPPEEVHTKLLDIVVSVGRTGRATPFAQMTKVKVAGSEVRQATLHNADVVKAKGVLIGDTVVLRKAGDVIPEVLGPVVELRDGSEREFVMPTQCPECGTTLAPAKEGDVDLRCPNAESCPAQVRGRVEHIGSRGALDIEALGEVSAAALTQPLVPAEPPLRTEAGLFELTVADLFPIEVVVRDSETGLQKLDAKGDPKVVTPFKRKRQLAKDGAFDPEAGAFAGDAASVPSTNALRLIENIERAKTKELWRLLVSLSIRHVGPVAARALAGYFGSLEAIRGASRDELAAVDGVGGIIADALIAWFEVDWHVEIVERWAAAGVRFATPGHPGPGAADAAGGVLAGLTIVATGSLEGYSREGAQEAILAAGGKAGSSVSKKTDYVAAGPGAGSKLGKAEALGLRIITAAEFHLLVTEGPAAIALPEEASVDAPAEAAAGDADEDVASRSEVENDAVTEDDAAPDAAAPTTEEPTGPDA
>NZ_CP047183.1|WP_159914307.1|1925886_1926612_-|alpha/beta-fold-hydrolase
MSHEIRGGVVLPARREDVELHTSDGLTLVGELALPLEREPVATLVTLHPLPTHGGFMDSHILRKAAARLPALADLAVLRFNTRGTASPRGTSGGAFGHGTDERADVAAALALVAERGLPHPWLVGWSFGTELALKWGREHPVEGAILLSPPLHRTSAEEVAAWGEDGRPLVALVPEFDDYLRPEAAAERFASVPQLDLVAVEGGKHLWVGEAQTRRVLDEIVRVVAPASSPLPTEWAGELG
>NZ_CP047183.1|WP_159916999.1|1926608_1926845_-|hypothetical-protein
MLAGFRRTESHAGREWNVQPVSAARAVKNYLCPGCGLTIDIGQAHLVTWRADGALGDAADLAGRRHWHTHCWRIRGAR
>NZ_CP047183.1|WP_159914309.1|1926951_1928700_-|sodium:proton-antiporter
MDYALLGVVGIITVVTVARFSSRLGIAAPLLLVVIGIGASYLPGVPDIEVEPELILAGVLPPLLYSAAIQVPLTDFRRNLRSIFGLSVLLVVVTALVVGGFLYLVFPDLSLPAAIALGAVVSPTDAVAATSIGKKLGLPPRLVTVLEGESLVNDASALVLLRAATAAAAVVGASVTTDAIDVGEVGVLFVYSVLMAIALGLVMGFLTVFVRSKLRDPVLDTAVSFAVPFLAYIPAEELGASGVLAVVVTGIYTGHNSARFLSPQSRISERVNWRTAQFLLENGVFLLMGAEIKAIVSGVVDPGEFGVGTAVLLGLATVVILIVLRTLFVWPLLLWLRSSGRRAERINRRLAVGVMRLRNSATSDERFRRRQVRAERLYLRRETDLAATTSEAFGWRGGVVLSWSGMRGVVTLAAAQSLPDETPYRSQLILIAFTVAVVTLLLQGATLPALIRLTGIQGTDGEADRRELATLLDEVAATGIQALPEAVAELPDGEAGERVLERVRRDTLTRSQVAWEQVGRAEDAPLGPHAQYLRLRRAVLLAEREALLDARGRGVYASRTLRRAQLMLDAEETRLEMDDSSH
>NZ_CP047183.1|WP_159917001.1|1928759_1929500_-|lytic-transglycosylase-domain-containing-protein
MVAQHPQTSVARTPANRTSGRPAVPHQTPVRRSWARIPVTVLAFTASIAFAMVNVVDPSSGAVASPYYQAPARFNGDSAQRLVVADAVERTVQRDSFGAEAKPTPTPTPTPTPTETQTASATADEEESGSAEAETAAPVQRAAAPDPGSAKAIAYDMIVQRGWADSEYDCLVLLWNRESGWNVYAENKSSGAYGIPQALPGSKMATAGADWATNASTQITWGLGYISGRYGSPCGAWAHSESVGWY
>NZ_CP047183.1|WP_159914311.1|1929551_1930103_-|DivIVA-domain-containing-protein
MTAPFPRARESRPGYDTAEVDSFLASAREAYSQLSGGPADLLAADLRHTAFTLRKGGYSAPHVDAALERLEDAFALRERQYAIAARGEEAWLADARATAQEIVNRLARAPRERFTRAGALTTGYNIRQVDAFADRISGYFRDGSVLTVDDVRTVSFAPQRGGYAEAQVDLLLDTVVDVMLAVR
>NZ_CP047183.1|WP_159914313.1|1930165_1931104_-|phosphatidate-cytidylyltransferase
MVTRDALRARAQQGRADVERQLEATRAQLEATNDRLTARSGRNLVSATAIGLLGGGAMVVSLLLVKELFMVLAGVVVLLAALELSNALRHAGRDIPRVPTGIAAVVAVPAAYYGGLGAAWATVLGGSVLIGLWRLGEQLFRRTASSRRDLVLDIGLGAFVQGYTTFLGAFAIRLVAEPGGQLWAFAFLVLVIVVDTGAYVSGLTWGKHPMAPRISPKKTWEGFAGAAVAGIVVGVVLALLMLGQPWWVGAVFGAVVLLTATLGDLAESLIKRDIGIKDMSSWLPGHGGVLDRLDSILPSAAAAYVLYFLFAH
>NZ_CP047183.1|WP_104232499.1|1931184_1931739_-|ribosome-recycling-factor
MISDVLADAKTKMGKAVEVAKEDFSTVRTGRANPGMFQKVLVSYYGTPTPLSQLASMQNQEARTLVLTPYDKGSLRDIEQAIRDMPNLGANPTNDGTIIRVTLPELTAERRKEFVKIVRTKAEDAKIAVRNIRRKGKDDLDALKGDIGDDELARGEKELEALTKQHVDAIDEALKRKESELLEV
>NZ_CP047183.1|WP_104223894.1|1931771_1932503_-|UMP-kinase
MTETDAMTTGKRRRVLLKLSGEAFGAGTLGVNPDVISALAREIADAATEVEISVVVGGGNFFRGAELSQRGMDRGRADYMGMLGTVMNALALQDFLEQAGAETRVQSAIAMTQVAEPYIPRRAIRHMEKGRVVIFGAGAGLPYFSTDTVAAQRALETHADVVLVAKNGVDGVYDADPRTNPDAKKLDALTYQEALQRGLKVVDSTAFSLCMDNGMPMQVFGMEPSGNVAKAIRGAELGTLVSN
>NZ_CP047183.1|WP_159914315.1|1932638_1933466_-|elongation-factor-Ts
MANFSLADVKTLREQLGTGMVDTKNALVEADGDLDKAVEILRLKGAKGNAKRADRSTSEGLVAAAEKDGVATMIELACETDFVAKGTKFIALADAVLAAVVAAGSTTVEEALAAPADGKTVAGLIDDEAAILGEKVELRRVASVSGEHFAIYLHKTNKDLPPQVGVVVGYAGEDAETARSVAQHISFANPSYLSREDVPQSEVDNERRIVEEISRGEGKPEAALPKIIEGRVNAYFKQVALLDQDYAKDNKLSVSKVLSDAGLTVSGFARFKVGA
>NZ_CP047183.1|WP_104272925.1|1933647_1934595_-|30S-ribosomal-protein-S2
MAVVTMRQLLDSGVHFGHQTRRWNPKMKRFILTERSGSYIIDLQQSLAYIDKTYDFVKETVAHGGTILFVGTKKQAQNAISEQATRVGQPYVNQRWLGGLLTNFQTVSKRLARMKELEELDFDDTSKSGFTKKELLIKKRELDKLHKSLGGIRNLSKTPSALWVVDTKKEHLAIDEAKKLGIPVIGILDTNCDPDEVQYPIPGNDDAIRSVSLLTRIVADAAAEGLIQRHQKPEAEGNVSAVEPLAEWEQELLSTGAPAADVQEPNEQAGAETEKVADAEAETADEAVVEAETPAAEEAPEADVAATSTDETATA

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Crispr_ID: NZ_CP047183_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047183_6

3274657-3274794

Orphan

Consensus_repeat	Method
AAGTTGTCGCACTCGGCGTCGACTGCGACAACTCCTGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047183_6

>merge|NZ_CP047183|6|3274657-3274794|CRISPRCasFinder
AAGTTGTCGCACTCGGCGTCGACTGCGACAACTCCTGGCACCTCGCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCGTCCGCCCGGCCGCCACTCTCCAGAAGTCGTCGCACTCGGCGTCGACTGCGACAACTCCTGGC

>NZ_CP047183|6|5|3274657-3274794|CRISPRCasFinder
AAGTTGTCGCACTCGGCGTCGACTGCGACAACTCCTGGC	ACCTCGCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCGTCCGCCCGGCCGCCACTCTCCAG
AAGTCGTCGCACTCGGCGTCGACTGCGACAACTCCTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047183.1\|WP_159916177.1\|3267053_3267608_+\|peptidase	unknown	unknown	unknown
NZ_CP047183.1\|WP_159916201.1\|3288548_3289274_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047183.1\|WP_159916195.1\|3280616_3281804_+\|FAD-binding-monooxygenase	unknown	unknown	gnl\|CDD\|169028
NZ_CP047183.1\|WP_159917180.1\|3284960_3286310_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP047183.1\|WP_104226358.1\|3273655_3274555_+\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
NZ_CP047183.1\|WP_159916191.1\|3279139_3280030_-\|DUF808-family-protein	unknown	unknown	gnl\|CDD\|377542
NZ_CP047183.1\|WP_159916185.1\|3270149_3271202_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238568
NZ_CP047183.1\|WP_159916179.1\|3267757_3267961_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047183.1\|WP_159916173.1\|3265693_3266383_+\|sortase	unknown	unknown	unknown
NZ_CP047183.1\|WP_159916181.1\|3267980_3268166_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047183.1\|WP_167302081.1\|3269109_3270180_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|376439
NZ_CP047183.1\|WP_104223405.1\|3283016_3283958_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP047183.1\|WP_159916193.1\|3280099_3280558_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP047183.1\|WP_159916197.1\|3281814_3282855_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380488
NZ_CP047183.1\|WP_159916183.1\|3268357_3269113_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP047183.1\|WP_159916187.1\|3271502_3273590_+\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224748
NZ_CP047183.1\|WP_159916175.1\|3266379_3266916_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|131283
NZ_CP047183.1\|WP_159916189.1\|3275024_3278699_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373145
NZ_CP047183.1\|WP_104223406.1\|3283957_3284875_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP047183.1\|WP_159916199.1\|3286408_3288172_+\|beta-galactosidase	unknown	unknown	gnl\|CDD\|366567

Protein	Function_ID	Function_description	E-value
NZ_CP047183.1\|WP_159916175.1\|3266379_3266916_+\|signal-peptidase-I	gnl\|CDD\|131283	TIGR02228, Signal_peptidase_I_W, signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.	3.812e-14
NZ_CP047183.1\|WP_159917180.1\|3284960_3286310_+\|extracellular-solute-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.1245e-61
NZ_CP047183.1\|WP_104226358.1\|3273655_3274555_+\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	9.20385e-99
NZ_CP047183.1\|WP_159916191.1\|3279139_3280030_-\|DUF808-family-protein	gnl\|CDD\|377542	pfam05661, DUF808, Protein of unknown function (DUF808). This family consists of several bacterial proteins of unknown function.	1.62478e-108
NZ_CP047183.1\|WP_159916197.1\|3281814_3282855_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|380488	cd01574, PBP1_LacI, ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	3.11687e-109
NZ_CP047183.1\|WP_159916199.1\|3286408_3288172_+\|beta-galactosidase	gnl\|CDD\|366567	pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35.	6.83297e-133
NZ_CP047183.1\|WP_167302081.1\|3269109_3270180_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	8.99335e-76
NZ_CP047183.1\|WP_104223405.1\|3283016_3283958_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.47253e-68
NZ_CP047183.1\|WP_159916193.1\|3280099_3280558_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.44849e-16
NZ_CP047183.1\|WP_159916185.1\|3270149_3271202_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238568	cd01148, TroA_a, Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	3.13964e-80
NZ_CP047183.1\|WP_159916183.1\|3268357_3269113_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	2.90368e-102
NZ_CP047183.1\|WP_159916187.1\|3271502_3273590_+\|acyltransferase-family-protein	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	7.31952e-51
NZ_CP047183.1\|WP_159916195.1\|3280616_3281804_+\|FAD-binding-monooxygenase	gnl\|CDD\|169028	PRK07588, PRK07588, FAD-binding domain.	3.45295e-76
NZ_CP047183.1\|WP_159916189.1\|3275024_3278699_+\|hypothetical-protein	gnl\|CDD\|373145	pfam14587, Glyco_hydr_30_2, O-Glycosyl hydrolase family 30.	1.92427e-16
NZ_CP047183.1\|WP_104223406.1\|3283957_3284875_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.67911e-64

>NZ_CP047183.1|WP_104226358.1|3273655_3274555_+|cation-transporter
MGHSHGVPAGSAAARHRRPLVAAFVLTAAFMVVEFAVGVATGSLALLSDAAHMGTDVLALGMSIAAISLAARPAAKGRTYGSYRLEVLAALANGLLLFAVAAFVIVEAVRRFAEPPAVPGGPLLITAVVGLAVNLVSLRLLSAGAKESITLRGASLEVLGDALGSIGVIVAAIVLLTTGWAWADPIVGVLIGLLILPRTWSLTRQALGILMESAPAHVDLAALERDVCAVPGVLALHDLHVWTITSGMESATGHVVVAPDADYRTALSRVLAVLRERHGIDHATIQCEPEAFPETTHRV
>NZ_CP047183.1|WP_159916187.1|3271502_3273590_+|acyltransferase-family-protein
MSRDSARTAPSGRSALVRKADASGYRPEIEGLRAVASLLVATFHIWLGRVSGGVDVFFVVAGFLTTLTLLGQIRRFGRVRPIAFLRRLASRLFPAAAVVLVVVAALAPLLLRPSQLLQTFTEVLASTFSVENVALARAGVDYLAQDDFHTPVQNFWAMSAQGQFYLIWLALVLVASLAAVLLRRRAQLPRFLLALVAALTVLSFAFSVVLVGIDQPTAYYSTLARSWEFGLGSLAALVLPGLAIPAALRTVAGWLGLIGVVSCGFVLQVSSAFPGAAALWPTLSAVLVLIAGTGPAPERGVGWLLALRPLVRLGGLSYGLYLWHWPILVFWRERTGEDPTVLAGLGIIAAAILLAAVSKRFLEDPLHRRAPAERPHRLRALAPAALLAVAALVGVTGLTGTNAAITADLTRAHALPVSTEGCVGAAALANACPDSWTSSLPAVDASEDGSVLNTDECSTGNSGTELKECRFGDPAGLRVLLIGNSHAASFFPALRGVAEERGWDLHTYYKTGCVFSTAERRDDSASARRSCDVWNEKLQEVLASQEPYALAVTAYSAKKSVFVDASGTPDEQAGIDGFHESWAPLIARGSTVVAIRDNPVLPSLSLLACAEEPGSAADCSVPLDEAFADRELMAAAAEGWPGAAAVDLTRWFCDDRGCPLVIGGVKVYRDLGHLTESYARTLTPYLREALDPLVG
>NZ_CP047183.1|WP_159916185.1|3270149_3271202_-|ABC-transporter-substrate-binding-protein
MSTHRRRPAALALAALTLLALTGCGASEPIEPESTAAAGEGTTSYPLTVDNCGASTTVTAPPQRVVSLDQDSTEILLSLGLEDRMVGTASWTDPVLETLASANESVPRLADNAPTYEVLLGADPDFVTASFGRHYAPEGVASRERLAETGIGSYLSPTDCDGGASVNGGSGTRTVPLTVEVLYQEIHELAEVFDVQQRGDALVAQLQERAAAATDGVDLGGRSVAFWFADTKTPYMAGGYNFASMLGTTTGMTNVFAERTDDWAAVGWESVVAADPDLLVLGDLQRDRFPGDRLHDKTAFLRSDPLTSSLPAVQDGRFIALHGAELNPSIRFVDGLEKIRAWWDENGASL
>NZ_CP047183.1|WP_167302081.1|3269109_3270180_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MVGRERGLALSTVLVRRVPRGLVAAALVVGGLLALALSVGVAVTLGPADVSLVNVRDILLNHLGLASVPVRAAEDAIVWQERLPRALVAAACGAGLGVCGVILQSLLRNPLADPFVLGVSSGASTGAVLVGVLGVGGGVVGLSGGAFVGALVAFGFVLLLTRFSAGGTSGVILAGVASTQLFSALTSLIVFALADSDETRGVMFWLLGSLEGMRWDDVALSGGVVLLGSVVCLAAARTLDAFAFGEDVAASLGVHVRRTRLLLLVVTALLTATLVSIAGAIGFVGLVLPHAARLVFGQRHSRVIPATILLGAVFLVWVDAGSRVAFAPTPLPVGVGTALVGVPVFMLLLLRRRGRS
>NZ_CP047183.1|WP_159916183.1|3268357_3269113_-|ATP-binding-cassette-domain-containing-protein
MTLEADRVSWRRGGRLVVDGVSLRPAPGSTVGLLGPNGSGKSSLLRLLQGTAAPDAGVVTLDGAPLRSLRRREVARAVATVTQQAETEADLPVRDVVRLGRTPHRSLLGGDTAEDLRAIERALEQVGLEAKADHLWHTLSGGERQRAHIARALAQEPRELLLDEPTNHLDIRHQLELLALVRALPVTTVVALHDLNLAALFCDALLVLREGRVVAGGTPEDVLTPALIADVYGVRARVVVDAGRPHVLFDS
>NZ_CP047183.1|WP_159916181.1|3267980_3268166_-|hypothetical-protein
MSRDDVAPGRFARFVKWVNKADGWEPEYLRGRVVAKKDGEWIVTVDGEERRIVKKEWSVYR
>NZ_CP047183.1|WP_159916179.1|3267757_3267961_-|hypothetical-protein
MLPDRRTPEVREARPGVFVLELRRTRRRPAEELGVLIRTGATWTVLGPEGVLSDVPSFHDAVAALRE
>NZ_CP047183.1|WP_159916177.1|3267053_3267608_+|peptidase
MVSRAGLAGLVAGALVLGAAATATAVLLDRASVSARVASGTVIATFSGTGATTVPVPVAGLVPGGTARRLLDLTNAGTLPMSALQLQATTGTDLSDGLQLAIERCSQSWSADAATCPGTVTTVSADRPAASRLDLPGSPALAVGATDHLRLTVRLSDSAPSAAQSTSATLTVTVVGVQRPGRQL
>NZ_CP047183.1|WP_159916175.1|3266379_3266916_+|signal-peptidase-I
MKVLRALLGCLVAIVAVAGLAVFVLSALGLVRLVPVLSNSMAPGMPVGSLAVTLPVDQAAIRAGDVIVFTDPDDPGRRVIHRVTLVYSEEEAAALRGREPGQLALTTKGDNNESADPWIVTIADERIWRESSVVPLLGWPSIGLAHPEARFALFAAGGAVIVGALLIAIWRRPAEVAP
>NZ_CP047183.1|WP_159916173.1|3265693_3266383_+|sortase
MPHARALVAVLAAVLLAPAASAEPVGLLDVRELSAPGSLTDLAPGDRAEWAVEVTSTGLAPQGVSVAFAVDGGTLAQDPRDGLQLSVELCDSAFTVAEVVDGARTVERYLCPDDAVPLGSGPAATLGRLDGVRPLERGATVGVRVRVLFPESAGNETELAAASLRVLVGTTEEDPSAAPGPGSFPGAAGGGLAVTGRDLGAALLGGMLALGSGVLLAAAARRRHRREQA
>NZ_CP047183.1|WP_159916189.1|3275024_3278699_+|hypothetical-protein
MSMSFRRVAALATSAALATGALLAIPAAAAPAQAADAFRITPNPAAAGEAFEGWGTSLVWFANATGNYPEALREDLYQKVFGDSGLDLNIARYNIGGGNASDVKDYLRPGGAVEGWWKPNPAGDASTYGGTSTKLADRDALQAKWNADDPASYDWTADETQRWWVERLAEEKQISHWEAFSNSAPYFMTESGYVSGGFDANSEQLKPAAEEQFAKYLVKVTEHMEDEYGIEFDTLDPFNEPNTNYWGTQLSNGVPTGGRQEGMHVGPTRQAGLIPDVTAALDASTTEAGLAAMDETNPDIFATNWAAYSAAIRAEVDRMNVHTYGTSGRLKVRDLAKQADTDLWMSEIEGNWVTGFDPTNMENGLGIAGRINDDLRELEPKAWVLWQPVEDYYNMQQPKPKGENLNWGSVYIDLDCKPYQENGTEVWKSVRRVADAGGDSTKAPVCGVETNSKFNTIRNFTKFIHEGDHLMPSNDTSSTAAVRGDGSGATVVHTNSTAAEKTVVLDLSRFGTIADTATVTPYVTTKASSAAAPTSNALVAKTPVAVDRISRTATITVPAKSVTSFSIDGVSGVADSAPALRDGHRYQLVGTQSGKALTGNPSGAATTITGLATDSATAAKQTWTVREVAAGEREATRRVVLVNGDGRVLGATTAGTDLRSLTVDAAKTTAATRWIVNTTDGVNVSLVNESIAQSLDVNGGSSADNASVGVYTSNGGANQSWSLRDLAPAAGQTIAIRTTAGVAPTLPASITPQYSWGAGAPLAVTWQRPADSAYGATGRVEVPGTATDLYGQTITVTALVDVGGLTATDPVSVTAAAGASVAGVKASAPTTVPARVGASASTFPVPVVWDWTPLTTASLAQPGQVTVSGTATADGATLPATLTVLVTQGTLRNFNPDAGIVATASSSESGYGPERTRNGVDGDKGWSNWTSGTKAAQSSLTYTFPSTHQVEKVSVQFLADGGTSWAKTYQLQYQAADSTTWTAVPGYESAVALASPAGGTAPTLVASFAPVTAKAFRVVMNAYDNTHLIVAETKLYESVASPAAVATLGALRVGGVGIAGFDPARTSYAVTVEGTAMPAIQAVATDSAATVRITQPTTANGGVATIAVRAADGSVTSTTTVTVTLKAPVALAVAVTAATRCTAGTVTLTVAAKNQSGVPVSMTIATPSGSKQVTGVAPGASGSAAFTTRAASVPAGQATVTATGTVDGKQVTSVATGAYAARSC
>NZ_CP047183.1|WP_159916191.1|3279139_3280030_-|DUF808-family-protein
MSVGLLAVVDDILTAALKASAKTAGVVIDDAAVTPQYVQGLTPARELPVVGRIALGSLFNKFVIIIPLALLLSAFAPQVLPYLLILGGAFLCFEGAEKVLEWFGVSHGGHETEARDEKKLVFGAIRTDLILSTEIMLIALDGLDPDFGIWPTLGALLVIGLGMTLLVYGAVALLVKIDDVGLRLMKNAARGVRRTGARIVASMPAVFRAISIIGTLAMLWVGGHLVVANLAETVWHGPYDLVHVVTHAVEGAGPVVVWLADTFVSMIFGLVLGLVIAAVVMGVSRLRTRDKAASGH
>NZ_CP047183.1|WP_159916193.1|3280099_3280558_-|MarR-family-transcriptional-regulator
MAAESRDGDLGIRTRVRQVTERQRLFEQSLSRSLSVDAPGLSAMTHLLAAGPLTPTELARRLGISTAATTLVLNRLEAAGHVRRDRHPSDGRKLIVTATDRSAARAQARVAPLIAGVEELVASLDPAESAAVLSFLDRLLAVYDEATEEPRA
>NZ_CP047183.1|WP_159916195.1|3280616_3281804_+|FAD-binding-monooxygenase
MRVLISGASIAGPALAFWLHRYGWETTIVERAPALRLGGQNIDVRGAGREVARRMGLEDDIRAATTGEVGTRFIGRGGRTLAEFPAGTSDSGGATAELEILRGDLAELLVARTAEHTEYRFGDRITGLDQTRGGVVASFAHASDERFDLVVAADGIGSSTRRLVVGDEPEIRSLGLEISWATIPRTAADDDWWRWYVAGRGRSITLRPDPHGTLRVAFSYLSDRTVRRGVDEQRARLREVFGDAGWEAQRALDGIDAADDLYSEAVGQVRAPRWSSGRAVLVGDAAYCASPVSGMGTSLSLTGAYVLAGELAAHVDPRDGLADYERRLRPYVDQAQSLPPGTPRLAHPRTRAGVAVLGAGVRLAATPLAGRLAGRFFTPPAEAIDLPDYGHLEQA
>NZ_CP047183.1|WP_159916197.1|3281814_3282855_-|substrate-binding-domain-containing-protein
MALETDRPSPSTRPRRGVSMADVARRANVSGQTVSRVSNGKQNVDGETRERVLEAMRALGYRPNSAARALRTGRFHSIGVIMFTLSSFGNMRTLDAIAIAAADAGYSITLIPVSHPTQGEVSVAFHRLSEEAVDGVIIIVEAHLLDEADIVLPPDLPVVVVDSAGGEKHPVVDTDQMSGARQAVEHLLGLGHRTVHHIAGPDRSYSAERRHEAWESTLIERGAPVPEVLVGDWSTDSGYRLGKRLAADPEVTAIFAANDQMALGVLRALHEAGRAVPGEVSVAGFDDMQESASFWPPLTTVRQFFGDTGRRSVDILLRELESGERTGVSLVPTRLIVRESTGPAPA
>NZ_CP047183.1|WP_104223405.1|3283016_3283958_+|sugar-ABC-transporter-permease
MTTTSPPVPLSEVAPPASPLAAPKSRAKSEWKGLAFVAPFLVVFLLVFIAPVVYSIYLSLFREQLVGGNSFVGFANYAAIFTDPNFWEGFGRVLLFLVVQVPVMLVLALVAALAIDSGRLHGTGFFRIVVFLPYAVPAVVAVLMWGFIYGDNFGLAANVNDLLGSDVVQPFSRDWILASIGNIVTWEFVGYNMLIFYSALKTIPGELYEAAEIDGAGPMRVIRSIKLPALRGAIVIATIFSIIGSFQLFNEPNILRTLAPNIITTYFTPNMYAYNLSFAGQQYNASATVAIVMGVITAVIAYVVQLRGARKEN
>NZ_CP047183.1|WP_104223406.1|3283957_3284875_+|carbohydrate-ABC-transporter-permease
MALATAPRTPARAPKRPAARRGSSVQPKKSIAFTLLMSVFILYSLVPLAWLVINATKTQAGLLSSFGLWFDGDFVFFQNIADTLSYRDGIFLRWLGNTLLYVVVGAGGATLLATLAGYGLAKFRFTGRKAVFAVVLGAIAVPGTALAVPTFLMFSQLGLTNTPWAIIIPSLISPFGLYLVWVYAVESVPTELLEAARMDGAGEFRTFFTISIRLLAPGIVTVLLFSVVATWNNYFLPLIMLSDPTWYPLTVGLNQWNAQATGVSAQPIYNLVITGSLLTIIPIVVAFLGLQRFWQSGLSAGSVKG
>NZ_CP047183.1|WP_159917180.1|3284960_3286310_+|extracellular-solute-binding-protein
MKIARSALRRTLTVAAVAALAAGSLAACSSTSGGGTTTSAGSAADLDAALEAGGKITYWSWTPSAEAQVAAFEEAYPKVDVELVNAGTNKDEYTKLENAIKAGSGAPDVVQIEYYAMPQFALSDSLLDLSQYGMGDLEDKYSASTWGSVNIDGKLVGLPQDSGPMALFYNKTVFDQYGIAVPATWDEYVAAAEKLHTADPSKYITADTGDAGFATSMIWQAGGEPFTTDGTDVKIDLADEGTAKWTGVWNQLVEKKLLSDTPAWGDEWYKGLADGSIASLVTGAWMPGVLESSVPDASGDWAVAPIPTYDGTAVSAENGGGGQSVTKQSENPALAAAFLRWLNSDQASVDVFLQSGGFPSTTADLDSSDFTGQESEYFGGQKINEVLTQASKDVRSGWSYLPYQVYANSVFGDTVGQAYANGTSLDQGLADWQSKLVQYGNAQGFTVSE
>NZ_CP047183.1|WP_159916199.1|3286408_3288172_+|beta-galactosidase
MTTAPESRFAIGADDFELDGRPHRILSGALHYFRIHPDLWADRIRKARLMGLNTIETYVAWNAHEPRRGEWREDAGLDLGRFLDLIAAEGMHAIVRPGPYICAEWDNGALPAWLFRDPEVGVRRSEPNYLAAVSDYLRRVYSIVAPRQIDVGGPVVLVQIENEYGAYGSDKEYLAELVRVTRDSGITVPLTTIDQPTPQMLADGSLPGLHLTGSFGSRTTERLATLREFQPTGPLMCMEFWCGWFDDWGTQHHTTDADASAQELDTLLAAGGSVNIYMFHGGTNFGLTSGANDKGRYAAITTSYDYDAPLDEGGDPTAKFWAFRDVIARYAPVPEEVPAVRPPAPALTAPLVPGPALLGLGQAFGTAAHLDAMASFDDLGHDDGFVLFTTTLDGASAPARLVVGEEVRDRAWVLLDGVPVGVLARDHHERALTLPSGRGELAILVENQGRVNYGTRIGEHKGLIGGVTLDGAELTGWAARPLALECLPDLAVAAPAFSAGPQLASGSFDLDEQADLYVDTLHWGKGLVWVNGFLLGRYWRRGPQRTLIVPSPVTRAGRNRVVVLELEGIAEPEIRLLSGAELGHTEI
>NZ_CP047183.1|WP_159916201.1|3288548_3289274_+|hypothetical-protein
MKAKALLRTTLIGGALLLALSGCAGTATSGSTLRPFTPTLPSSSAAPSATATAAAPAADTAQKTGDQVAAVLTGVQFVPGEYASIQEMLDSIYPGLTATDASCLSPFGLGWDTAQPAAGLSYGTSADRSMTAVVSSTGTADAAASLLASATDATTRCASGSALFAMQGVPVETTVERTEQTLTGADETLGWKVSGAVGGKPFSLVGITARVGGDAVALVGWDPATNTSYVPRATQLVVDGL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	CP058906	Micromonospora phage pMLP1, complete sequence	38533-38556	3	0.875
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	CP003954	Rhodococcus opacus PD630 plasmid 5, complete sequence	4304-4327	3	0.875
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MF140398	Mycobacterium phage Amohnition, complete genome	36572-36595	3	0.875
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MN234199	Mycobacterium phage Ekdilam, complete genome	36021-36044	3	0.875
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	NZ_JX627580	Methylobacterium oryzae CBMB20 plasmid pMOC1, complete sequence	122417-122440	3	0.875
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MK511056	Pseudomonas phage BR293, partial genome	3002-3025	3	0.875
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MK511055	Pseudomonas phage BR204, partial genome	3014-3037	3	0.875
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	NZ_CP042998	Aquisphaera giovannonii strain OJF2 plasmid pOJF2_1, complete sequence	45648-45671	3	0.875
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	KC736071	Mycobacterium phage WIVsmall, complete genome	22050-22073	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	NZ_CP010991	Pseudonocardia sp. EC080625-04 plasmid pFRP1-2, complete sequence	47741-47764	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	NZ_CP018080	Sulfitobacter sp. AM1-D1 plasmid unnamed4, complete sequence	108376-108399	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MH051248	Mycobacterium phage BigPhil, complete genome	28470-28493	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MN369739	Mycobacterium phage Kenuha5, complete genome	31744-31767	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MN369749	Mycobacterium phage MinionDave, complete genome	33672-33695	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MT684597	Mycobacterium phage Mandlovu, complete genome	32296-32319	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MK494110	Mycobacterium phage SwagPigglett, complete genome	33579-33602	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MT553345	Mycobacterium phage LastJedi, complete genome	28165-28188	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MN585973	Mycobacterium phage StAnnes, complete genome	34110-34133	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MH155865	Mycobacterium phage BobaPhett, complete genome	33783-33806	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MG962361	Mycobacterium phage Alexphander, complete genome	32985-33008	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	KM597530	Mycobacterium phage Bipolar, complete genome	31948-31971	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MT522000	Mycobacterium phage Soul22, complete genome	32881-32904	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MT684593	Mycobacterium phage Moonbeam, complete genome	33189-33212	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MN369755	Mycobacterium phage Minnie, complete genome	33217-33240	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MK016496	Mycobacterium phage IrishSherpFalk, complete genome	33055-33078	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MN735431	Mycobacterium phage Hegedechwinu, complete genome	31485-31508	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MN586005	Mycobacterium phage Lorde, complete genome	31710-31733	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	KM101122	Mycobacterium phage Hades, complete genome	32522-32545	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	NC_041989	Mycobacterium phage Shauna1, complete genome	31623-31646	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MH155866	Mycobacterium phage Byougenkin, complete genome	32568-32591	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	KF017004	Mycobacteriophage Velveteen, complete genome	28470-28493	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MH371115	Mycobacterium phage Clifton, complete genome	28122-28145	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MH651178	Mycobacterium phage KristaRAM, complete genome	34079-34102	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MK524517	Mycobacterium phage James, complete genome	32661-32684	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MH669001	Mycobacterium phage EleanorGeorge, complete genome	32206-32229	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MT889380	Mycobacterium phage Coco12, complete genome	32545-32568	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MH077580	Mycobacterium phage Melissauren88, complete genome	33132-33155	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MT684595	Mycobacterium phage Mova, complete genome	32327-32350	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MK016494	Mycobacterium phage Filuzino, complete genome	31891-31914	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	KM215148	Mycobacterium phage Cerasum, complete genome	28488-28511	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MT310893	Mycobacterium phage DRBy19, complete genome	32570-32593	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	NC_011288	Mycobacterium phage Fruitloop, complete genome	33127-33150	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	NC_031262	Mycobacterium phage Brocalys, complete genome	27771-27794	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	A81401	Sequence 1 from Patent WO9907861	1264-1287	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	KY965064	Mycobacterium phage Pippy, complete genome	29728-29751	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	KX576644	Mycobacterium phage WillSterrel, complete genome	33088-33111	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	KY702574	Mycobacterium phage Kingsley, complete genome	31278-31301	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	NC_013936	Mycobacterium phage Ardmore, complete genome	31457-31480	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	KJ025956	Mycobacterium phage Saal, complete genome	32524-32547	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MN369752	Mycobacterium phage Flathead, complete genome	34147-34170	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	KR824843	Mycobacterium phage Ovechkin, complete genome	33516-33539	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	KY385384	Mycobacterium phage SimranZ1, complete genome	32167-32190	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MK494118	Mycobacterium phage Cornucopia, complete genome	33419-33442	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	AF030986	Mycobacterium phage Ms6 integrase (int) gene, complete cds	1264-1287	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MN310548	Mycobacterium phage Juice456, complete genome	34087-34110	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MH590602	Mycobacterium phage Gorge, complete genome	32704-32727	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MH727548	Mycobacterium phage Galactic, complete genome	33346-33369	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MF668270	Mycobacterium phage Emma, complete genome	33233-33256	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MF668287	Mycobacterium phage Wachhund, complete genome	32644-32667	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	JN020142	Mycobacterium phage Mutaforma13, complete genome	33737-33760	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MN586001	Mycobacterium phage Donkeykong, complete genome	32673-32696	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	KF114874	Mycobacterium phage Bobi, complete genome	34466-34489	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	NC_042323	Mycobacterium virus Mozy, complete genome	35197-35220	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	KM652553	Mycobacterium phage CaptainTrips, complete genome	32897-32920	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	JN699012	Mycobacterium phage SG4, complete genome	32220-32243	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MN586004	Mycobacterium phage Strokeseat, complete genome	32353-32376	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MN585987	Mycobacterium phage Enby, complete genome	31735-31758	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MH155871	Mycobacterium phage Mattes, complete genome	32661-32684	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MT684601	Mycobacterium phage Hlubikazi, complete genome	32354-32377	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MT114167	Mycobacterium phage Phanphagia, complete genome	31620-31643	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MH077585	Mycobacterium phage TChen, complete genome	34149-34172	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	MH825707	Mycobacterium phage MilleniumForce, complete genome	33435-33458	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	JF937093	Mycobacterium virus DLane, complete genome	32822-32845	4	0.833
NZ_CP047183_5	5.2\|1925113\|24\|NZ_CP047183\|CRT	1925113-1925136	24	KX808131	Mycobacterium phage SuperGrey, complete genome	33191-33214	4	0.833
NZ_CP047183_5	5.1\|1925056\|36\|NZ_CP047183\|CRT	1925056-1925091	36	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	282803-282838	10	0.722

1. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to CP058906 (Micromonospora phage pMLP1, complete sequence) position: , mismatch: 3, identity: 0.875

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgaggtggaccggctccgcgcc	Protospacer
 ******* **************

2. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to CP003954 (Rhodococcus opacus PD630 plasmid 5, complete sequence) position: , mismatch: 3, identity: 0.875

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgaggtcgaccggctcggcgca	Protospacer
 ***************** ****.

3. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MF140398 (Mycobacterium phage Amohnition, complete genome) position: , mismatch: 3, identity: 0.875

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgaggtcgaccggctgcgcgcc	Protospacer
 **************** *****

4. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MN234199 (Mycobacterium phage Ekdilam, complete genome) position: , mismatch: 3, identity: 0.875

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgaggtcgaccggctgcgcgcc	Protospacer
 **************** *****

5. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to NZ_JX627580 (Methylobacterium oryzae CBMB20 plasmid pMOC1, complete sequence) position: , mismatch: 3, identity: 0.875

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgtgctcgaccggctccgcgcg	Protospacer
 *** * *****************

6. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MK511056 (Pseudomonas phage BR293, partial genome) position: , mismatch: 3, identity: 0.875

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagctggaccggctccgcgcg	Protospacer
 ***** * ***************

7. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MK511055 (Pseudomonas phage BR204, partial genome) position: , mismatch: 3, identity: 0.875

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagctggaccggctccgcgcg	Protospacer
 ***** * ***************

8. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to NZ_CP042998 (Aquisphaera giovannonii strain OJF2 plasmid pOJF2_1, complete sequence) position: , mismatch: 3, identity: 0.875

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgaggtcgcccggctccgagcg	Protospacer
 ********* ********* ***

9. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to KC736071 (Mycobacterium phage WIVsmall, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

10. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to NZ_CP010991 (Pseudonocardia sp. EC080625-04 plasmid pFRP1-2, complete sequence) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
ctcgacgtcgaccggctccgcgcc	Protospacer
..*** *****************

11. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to NZ_CP018080 (Sulfitobacter sp. AM1-D1 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgaggtcgaccagctccgcggc	Protospacer
 ************.********

12. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MH051248 (Mycobacterium phage BigPhil, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

13. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MN369739 (Mycobacterium phage Kenuha5, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

14. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MN369749 (Mycobacterium phage MinionDave, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

15. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MT684597 (Mycobacterium phage Mandlovu, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

16. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MK494110 (Mycobacterium phage SwagPigglett, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

17. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MT553345 (Mycobacterium phage LastJedi, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

18. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MN585973 (Mycobacterium phage StAnnes, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

19. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MH155865 (Mycobacterium phage BobaPhett, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

20. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MG962361 (Mycobacterium phage Alexphander, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

21. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to KM597530 (Mycobacterium phage Bipolar, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

22. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MT522000 (Mycobacterium phage Soul22, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

23. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MT684593 (Mycobacterium phage Moonbeam, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

24. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MN369755 (Mycobacterium phage Minnie, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

25. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MK016496 (Mycobacterium phage IrishSherpFalk, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

26. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MN735431 (Mycobacterium phage Hegedechwinu, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

27. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MN586005 (Mycobacterium phage Lorde, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

28. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to KM101122 (Mycobacterium phage Hades, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

29. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to NC_041989 (Mycobacterium phage Shauna1, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

30. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MH155866 (Mycobacterium phage Byougenkin, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

31. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to KF017004 (Mycobacteriophage Velveteen, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

32. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MH371115 (Mycobacterium phage Clifton, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

33. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MH651178 (Mycobacterium phage KristaRAM, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

34. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MK524517 (Mycobacterium phage James, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

35. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MH669001 (Mycobacterium phage EleanorGeorge, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

36. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MT889380 (Mycobacterium phage Coco12, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

37. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MH077580 (Mycobacterium phage Melissauren88, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

38. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MT684595 (Mycobacterium phage Mova, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

39. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MK016494 (Mycobacterium phage Filuzino, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

40. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to KM215148 (Mycobacterium phage Cerasum, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

41. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MT310893 (Mycobacterium phage DRBy19, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

42. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to NC_011288 (Mycobacterium phage Fruitloop, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

43. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to NC_031262 (Mycobacterium phage Brocalys, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

44. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to A81401 (Sequence 1 from Patent WO9907861) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

45. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to KY965064 (Mycobacterium phage Pippy, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

46. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to KX576644 (Mycobacterium phage WillSterrel, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

47. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to KY702574 (Mycobacterium phage Kingsley, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

48. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to NC_013936 (Mycobacterium phage Ardmore, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

49. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to KJ025956 (Mycobacterium phage Saal, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

50. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MN369752 (Mycobacterium phage Flathead, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

51. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to KR824843 (Mycobacterium phage Ovechkin, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

52. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to KY385384 (Mycobacterium phage SimranZ1, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

53. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MK494118 (Mycobacterium phage Cornucopia, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

54. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to AF030986 (Mycobacterium phage Ms6 integrase (int) gene, complete cds) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

55. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MN310548 (Mycobacterium phage Juice456, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

56. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MH590602 (Mycobacterium phage Gorge, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

57. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MH727548 (Mycobacterium phage Galactic, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

58. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MF668270 (Mycobacterium phage Emma, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

59. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MF668287 (Mycobacterium phage Wachhund, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

60. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to JN020142 (Mycobacterium phage Mutaforma13, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

61. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MN586001 (Mycobacterium phage Donkeykong, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

62. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to KF114874 (Mycobacterium phage Bobi, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

63. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to NC_042323 (Mycobacterium virus Mozy, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

64. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to KM652553 (Mycobacterium phage CaptainTrips, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

65. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to JN699012 (Mycobacterium phage SG4, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

66. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MN586004 (Mycobacterium phage Strokeseat, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

67. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MN585987 (Mycobacterium phage Enby, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

68. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MH155871 (Mycobacterium phage Mattes, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

69. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MT684601 (Mycobacterium phage Hlubikazi, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

70. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MT114167 (Mycobacterium phage Phanphagia, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

71. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MH077585 (Mycobacterium phage TChen, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

72. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to MH825707 (Mycobacterium phage MilleniumForce, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

73. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to JF937093 (Mycobacterium virus DLane, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

74. spacer 5.2|1925113|24|NZ_CP047183|CRT matches to KX808131 (Mycobacterium phage SuperGrey, complete genome) position: , mismatch: 4, identity: 0.833

tccgaggtcgaccggctccgcgcg	CRISPR spacer
gccgagttcgaccggctccgcgac	Protospacer
 ***** ***************

75. spacer 5.1|1925056|36|NZ_CP047183|CRT matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 10, identity: 0.722

cgggccgaggcagcccgcctcgcccaggccaacgag	CRISPR spacer
aatgccgatgcagcccgcctcgcccacgcccttggc	Protospacer
 . ***** ***************** ***  .*.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047184

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP047183

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection