CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019399	Pseudomonas chlororaphis strain R47 chromosome, complete genome	3 crisprs	DinG,csa3,cas3,PD-DExK,DEDDh,WYL,RT	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019399_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019399_1

413907-414022

Orphan

Consensus_repeat	Method
GGGCTCGTCGCTGTGAGCGTGATGAGCCCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019399_1

>merge|NZ_CP019399|1|413907-414022|CRISPRCasFinder
GGGCTCGTCGCTGTGAGCGTGATGAGCCCGGGTGTTAAAGAGGGAATCCCCGGCCTGCCTGTACCAAGGTTCCCGAAACGGGTGGGGCTCGTCGCTGAGAGCGTGATGAGCCCGGG

>NZ_CP019399|1|1|413907-414022|CRISPRCasFinder
GGGCTCGTCGCTGTGAGCGTGATGAGCCCGGG	TGTTAAAGAGGGAATCCCCGGCCTGCCTGTACCAAGGTTCCCGAAACGGGTG
GGGCTCGTCGCTGAGAGCGTGATGAGCCCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019399.1\|WP_016702609.1\|413259_413700_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019399.1\|WP_009046542.1\|425465_426668_+\|3-oxoadipyl-CoA-thiolase	unknown	unknown	gnl\|CDD\|181242
NZ_CP019399.1\|WP_124301059.1\|426809_427925_+\|bifunctional-transcriptional-activator/DNA-repair-protein-Ada	unknown	unknown	gnl\|CDD\|225080
NZ_CP019399.1\|WP_009046532.1\|411376_411790_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP019399.1\|WP_009046535.1\|416037_417123_-\|nitrogen-regulation-protein-NR(II)	unknown	unknown	gnl\|CDD\|226370
NZ_CP019399.1\|WP_124301055.1\|417481_418894_-\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP019399.1\|WP_124301058.1\|423112_423907_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|236162
NZ_CP019399.1\|WP_110176436.1\|405180_405936_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223904
NZ_CP019399.1\|WP_007930832.1\|412805_413261_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	unknown	unknown	gnl\|CDD\|223297
NZ_CP019399.1\|WP_007929941.1\|414604_416041_-\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|273818
NZ_CP019399.1\|WP_124301054.1\|409695_411225_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NZ_CP019399.1\|WP_009046537.1\|419089_419989_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176139
NZ_CP019399.1\|WP_124301056.1\|420101_421823_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173843
NZ_CP019399.1\|WP_009046533.1\|412102_412585_+\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|180234
NZ_CP019399.1\|WP_009046529.1\|406930_408241_-\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NZ_CP019399.1\|WP_124301057.1\|421855_423043_+\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP019399.1\|WP_009046541.1\|423903_425430_+\|3-hydroxyacyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236211
NZ_CP019399.1\|WP_041985460.1\|408272_409559_-\|murein-hydrolase-activator-EnvC	unknown	unknown	gnl\|CDD\|227278
NZ_CP019399.1\|WP_007930824.1\|411791_412046_+\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|274017
NZ_CP019399.1\|WP_124301053.1\|406008_406767_-\|divergent-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|377404

Protein	Function_ID	Function_description	E-value
NZ_CP019399.1\|WP_124301058.1\|423112_423907_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|236162	PRK08138, PRK08138, enoyl-CoA hydratase; Provisional.	5.31143e-161
NZ_CP019399.1\|WP_009046542.1\|425465_426668_+\|3-oxoadipyl-CoA-thiolase	gnl\|CDD\|181242	PRK08131, PRK08131, 3-oxoadipyl-CoA thiolase.	0
NZ_CP019399.1\|WP_124301059.1\|426809_427925_+\|bifunctional-transcriptional-activator/DNA-repair-protein-Ada	gnl\|CDD\|225080	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism].	2.81408e-81
NZ_CP019399.1\|WP_009046532.1\|411376_411790_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	6.79697e-24
NZ_CP019399.1\|WP_009046535.1\|416037_417123_-\|nitrogen-regulation-protein-NR(II)	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	1.36849e-164
NZ_CP019399.1\|WP_124301055.1\|417481_418894_-\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.428e-152
NZ_CP019399.1\|WP_110176436.1\|405180_405936_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	2.22267e-23
NZ_CP019399.1\|WP_124301054.1\|409695_411225_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_CP019399.1\|WP_007929941.1\|414604_416041_-\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
NZ_CP019399.1\|WP_007930832.1\|412805_413261_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	1.05147e-88
NZ_CP019399.1\|WP_009046537.1\|419089_419989_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176139	cd08448, PBP2_LTTR_aromatics_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type regulator similar to CbnR which is involved in the regulation of chlorocatechol breakdown. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.05672e-89
NZ_CP019399.1\|WP_124301056.1\|420101_421823_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173843	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.	4.27213e-148
NZ_CP019399.1\|WP_009046533.1\|412102_412585_+\|protein-export-chaperone-SecB	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	4.26189e-83
NZ_CP019399.1\|WP_009046529.1\|406930_408241_-\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.95839e-143
NZ_CP019399.1\|WP_124301057.1\|421855_423043_+\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	2.41457e-149
NZ_CP019399.1\|WP_009046541.1\|423903_425430_+\|3-hydroxyacyl-CoA-dehydrogenase	gnl\|CDD\|236211	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated.	0
NZ_CP019399.1\|WP_041985460.1\|408272_409559_-\|murein-hydrolase-activator-EnvC	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	6.03157e-100
NZ_CP019399.1\|WP_007930824.1\|411791_412046_+\|glutaredoxin-3	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	1.27223e-49
NZ_CP019399.1\|WP_124301053.1\|406008_406767_-\|divergent-polysaccharide-deacetylase-family-protein	gnl\|CDD\|377404	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).	2.57061e-92

>NZ_CP019399.1|WP_016702609.1|413259_413700_+|hypothetical-protein
MHGSEEKDRPHSTPEADVRPKLMLRVFGSLAIFGVMVGLMIGRLTTPDPTELQEVQVQPNALVVWFNNEPKVHGEHIDGAVALLFEAEGRAQKGQLKINDKDANWRVRTTEEGLLLNVVAARALHGEWSGSEVDGRWRLELQLREE
>NZ_CP019399.1|WP_007930832.1|412805_413261_-|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL
MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRHADLASCLESLGHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPAEQRLRLPMREGCRSLNLSNTVAVAVYEAWRQLGFK
>NZ_CP019399.1|WP_009046533.1|412102_412585_+|protein-export-chaperone-SecB
MTDQQNTAATEDESAPQFSLQRIYVRDLSFEAPKSPAIFRQQWEPSVGLDLNTRQKALEEGFHEVVLTLSVTVKNGEEVAFIAEVQQAGIFLIKNLDDASMSHTLGAFCPNILFPYAREALDSLVTRGSFPALMLAPVNFDALYAQELQRLQAAGEGTVQ
>NZ_CP019399.1|WP_007930824.1|411791_412046_+|glutaredoxin-3
MAAVVVYSSDYCPYCSRAKYLLENKGVAFEEIKVDGKPQVRAEMAQKAGRTSVPQIWIGSTHVGGCDDLFALERAGKLDALLAA
>NZ_CP019399.1|WP_009046532.1|411376_411790_+|rhodanese-like-domain-containing-protein
MVAHLIQFATEHYLLVGAFVILLALLIAHELSRGGRSLSTRELTALVNSEQGVVIDIRPSKDFAAGHIVGALNIPQDKLAARVGELEKHKAKTIILVDALGQHAGTHARELMKSGFTAAKLSGGVGSWKADNLPLVK
>NZ_CP019399.1|WP_124301054.1|409695_411225_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MTTTPKPLVLMILDGFGHSESHESNAIYAAKKPVLDRLYASVPNGLISGSGMDVGLPDGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFENPTICAAVDKAVAADKAVHILGLLSDGGVHSHQDHLVAMAELAFKRGAEKIYLHAFLDGRDTPPKSAASSIELLDETFKTLGKGRIASLIGRYFAMDRDNRWDRVAQAYNLIVDGNGEFNAATAQEGLQAAYERGESDEFVKATTLGEPVKVEDGDAVVFMNFRADRARELSRVFVEDDFKEFARARQPKLAGFVMLTQYAASIPAPSAFAPGSLENVLGDYLAKNGKTQLRIAETEKYAHVTFFFSGGREEPFPGEERILIPSPKVATYDLQPEMSAPEVTDRIVDAIENQRYDVIVVNYANGDMVGHSGVFDAAVKAVECLDLCVGRIVDALEKVGGEALITADHGNVEQMSDAATGQAHTAHTSEPVPFIYVGKRNLKVREGGVLADVAPTMLKLLGLPQPAEMTGTSILV
>NZ_CP019399.1|WP_041985460.1|408272_409559_-|murein-hydrolase-activator-EnvC
MLRALITLALICLLQPAFADERAQTQQQLDATRQDIAELKKLLGKLQEEKSGVQKDLRGTETEMGKLEKQVDALQKELKKSESELQRLDEEKKKLQSARIEQQRLIAIQARAAYQNGRQEYLKLLLNQQNPEKFARTLTYYDYLSQARLEQLKNFNETLRQLANVEKEISLQQAQLLVQKSSLDTQREELDKVRKERQVALAKLNDDVKARGDKLKAREQDQADLGKVLKTIEETLARQAREAEQARQKALIAQQEAEKKRLREAQASADDSPRKPPRAAPGPLVSSAGASYGGPFASSRGKLPWPVDGRLLARFGESRGDDARTKWDGVMISASAGSQVHAVHGGRVVFADWLRGAGLLVILDHGNGYLSLYGHNQTLLKEAGDVVKAGESISTVGSSGGQGAPALYFAIRQQGRPSDPAQWCRAQG
>NZ_CP019399.1|WP_009046529.1|406930_408241_-|S41-family-peptidase
MLHLSRLTSLALTIALVIGAPLAFAAETAQSTAATTTKAPLPLEELRTFAEVMDRIKAAYVEPVDDKTLLENAIKGMLSNLDPHSAYLGPEDFAELQESTSGEFGGLGIEVGAEDGIIKVVSPIDDTPASKAGIQAGDLIVKINGQPTRGQSMTEAVDKMRGKIGQKITLTLVRDGGAPFDVTLARATIQVKSVKSQLLESGYGYIRITQFQVKTGEEVSKALAKLRKDNGKKLNGIILDLRNNPGGVLQSAVEVVDHFITKGLIVYTKGRIANSELRFSATGKDESEAVPMVVLINGGSASASEIVAGALQDQKRAVLMGTTSFGKGSVQTVLPLNNDRALKITTALYFTPNGRSIQAQGIVPDIEVRRAKITNEAQDNEYFKEADLQGHLGNGNGGADKPTASGSKPKPMPQDDDYQLAQALSLLKGLSITRSK
>NZ_CP019399.1|WP_124301053.1|406008_406767_-|divergent-polysaccharide-deacetylase-family-protein
MIGLLCLLAFTSTQAAEPAARKAYLSLIIDDLGQNLPRDRRVLALPGPVTTAIMPDTPHAAEFAREAHRAGKIVILHMPMDPATGPFAWHPELPIEELERRLNAAFKAVPYTSGINNHMGSRMTSQPQAMSWLMAELQRRHKFFVDSRTSAKTVAAAEAQKIGLASVSRDVFLDDERTEDAISHQLQTAIDLARKQGSAVVIGHPYPQTLAVLERELPRLKAQGIDWIDIELMISVRSNRAMVGHGKDGVYR
>NZ_CP019399.1|WP_110176436.1|405180_405936_+|ABC-transporter-substrate-binding-protein
MFKRLLLVLASASVLFAAGARAAQTPDTSLVLLTENFPPYNMARNGKNFAQGENINGIAVDIVREMFKRAGINYSLTLRFPWERIYKLALEQPGYGVFVTARLPDREPLFKWVGPIGPDDWILLARDDSKIALQSLEQARKYRIGAYKGDAIAETLAKQGLKPQVVLKDQDNARKLVGGQIDLWATGDPAGRYLARQEGVTGLKTVLRFHSTQLYLALNKEVPDETVARLQAALDQLREEGVVEEIMGRYL
>NZ_CP019399.1|WP_007929941.1|414604_416041_-|nitrogen-regulation-protein-NR(I)
MSRSETVWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQQPDVIISDIRMPGASGLDLLARIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRANQHAQEQQGLEVIPALARTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLDEIGDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETLVHAGKFREDLFHRLNVIRIHIPRLSDRREDIPTLAKHFLSRAAQELAVEPKLLKSETEEYLKNLPWPGNVRQLENTCRWITVMASGREVHISDLPPELLSLPQDSAPVTNWEQALRQWADQALARGQSSLLDSAVPSFERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGMKVDGGDDDDSDEG
>NZ_CP019399.1|WP_009046535.1|416037_417123_-|nitrogen-regulation-protein-NR(II)
MTISDQLHRLLLDNLTTATILLNADLRLEYMNPAAEMLLAISGQRSHGQFISELFTESAEALSSLRQAVEQAHPFTKREAMLTALTGQTLTVDYAVTPILSNGDTLLLLEVHPRDRLLRITKEEAQLSKQETSKMLVRGLAHEIKNPLGGIRGAAQLLARELPDENLKDYTNVIIEEADRLRNLVDRMLGSNKLPSLAMCNVHEVLERVSSLVEAESQGCITLVRDYDPSIPDVLIDREQMIQAVLNIVRNAMQAISSQNELRLGRICLRTRTMRQFTIGHVRHRLVTKIEIIDNGPGIPAELQETIFFPMVSGRPDGTGLGLAITQNIISQHQGLIECDSHPGHTTFSIFLPLEQGAPST
>NZ_CP019399.1|WP_124301055.1|417481_418894_-|MHS-family-MFS-transporter
MNAAQHAAAHKKARKAGIASFIGTTIEWYDFYAYGIAAALVFGKVFFPADLPAGTATLLSFLTLWAGFIARPVGGIIFGHLGDKIGRKTTLVITLIMMGVATTCIGLLPSYLQIGIWAPIALVVLRIIQGIAVGGEWGGAILIASESAPKGKGILYAAFAQQGSPAGNLLATLVFFGLSALPAPDFLLWGWRIPFLLSAALVLVGMVIRLKLEESDDMKRLIQQKKTVKLPILEVLRNHWQIVLLGAGVLPIIHVTYFKSTFALSWATKELGYSQSTFLSVIVIALVVQFITQPLGALLVSRMDMRKAVVLMLLPEFLLMPAMFFAVETGIYWIAVLGMCLATVPHSMFYGAVGGILARAFPTKVRYSGLSISYQLCSLLVGGATPVLAQGILNNTGSIVGVAIASACYALVSLVCMLLLLKRIGHNAADLSTAEQADADELAREPRATPLIEDPATLPPSIDKDAQPAH
>NZ_CP019399.1|WP_009046537.1|419089_419989_-|LysR-family-transcriptional-regulator
MDLKQLRYFVAVAEELHFGRAAARLFISQPALSFDIKKLESQLDVQLLTRNNKSVSLTNAGQVLLDEARYLLLRAEQARRLTLRSAQGFVGRLSIGFVNSILHRGLPQAVRTFEQDHPDTEIVLMEMNSAEQAQALQRGQIDIGFVHWSHFPESIRGEPVLAEPFLCCLPQGHRLAGESRIDLAQLANDDFILFPRNVSPHYHDLIIARCVAAGFSPRIRHETRLWQTVVAMVAYEMGVALVPQTLAGTWKEGVHYCEISGDGALSEIHAIRHADKPSAAAESFLTVLKALQKPVAPGL
>NZ_CP019399.1|WP_124301056.1|420101_421823_+|acyl-CoA-dehydrogenase-family-protein
MTALPEPAQDTLNIPDSRGLNLFDCDAGLAALLKVYLPPQLFAQWLPTLRQLGGRAGGELDVLALSADKNPPQLRPRTRRGEDLQSIYKHPDFIALERAAYAELGLASMSHCPEPVLPLVKYALTFLFVQAEFGLCCPVSMTDSLTRTLRKFGSPELVARYLPSLASRDFDRLFQGAMFMTEQAAGSDVSRTETRARLENGEWRLFGDKWFCSNPDADLAMVLARPEDAPEGMKGVSLFLLPKLRPDGSRNAYRILRLKDKLGSRSMASGEISLDGATAYLIGEVGRGFQQMADMINMSRLSNGVRAAGLMRRGVNEALYVARHRRAFGRHLIEMPLMQRQLLKMMLPAEQARSMFMQIATLLPRADAGDEAARKCVRILTPLIKFRACRDARRVTGDAMEVRGGVGYIEEWSDARLVRDAHLGSIWEGTSNIVALDIARAVTREQALEPLRHYLAGLLAEADLPAASQRLFETVLQRAVAAIEKVAQERRDDQVRLAGSALYHTATAIFMAWEASRQAPDYRRLALAHLLLQHKLLPRDPLRPEPALEPELLALLANESPLSKADAMQLLPA
>NZ_CP019399.1|WP_124301057.1|421855_423043_+|CoA-transferase
MNHAKGALAGLKVIDLSRVLGGPYCSQALADHGAEVIKLEPLSGDETRGWGPPFEGADASYFRGVNRNKQGIAVDLSRPAGITLLMRLLEDADVLIENFKPGTLERWGIGYAEVLSQRFPTLIHCAISGFGGDGPLGGLPGYDAVIQAMAGLMSVNGEAESGPLRIGLPIVDMVTGLNALAGILLALNERHRSGLGQSLDITLYDCGVSLLHPHLANYFAAGKTPLRTGNAHPNIAPYDSYRTGTEPIFLAVGNDRQFAKLCEQLDASALLDDPRFADNGRRSVNREALKQALEARLAEHDGTLLAQRLIRLGVPCGSIASIDKVVEHPHTRHRGLLVEIGDYRGVGSPVKLSRTPASYRSAPPALGANTREVLEGLGLDDQTIESLFEHGIVRE
>NZ_CP019399.1|WP_124301058.1|423112_423907_+|enoyl-CoA-hydratase/isomerase-family-protein
MSPESVSPQPQVLLEHPAPGVALLRLNRPQALNALNMALREELAEHFRRLDACPQTRVVVLTGGDTVFAAGADLGELVNASALQLYARHAERHWQAISACRKPVIAAVNGYALGGGCELAMHCDLIVAGHSARFAQPEIKVGVMPGAGGTQRLLRAVGKFQALRLLLTGCQVPADEALRLGLVSEVVADSETLPRALALATSIAGMPPLAVAQIKEVVLAGMDLPLEQALVLERKAFQLLFGSHDQREGMQAFLEKRKPEYQGK
>NZ_CP019399.1|WP_009046541.1|423903_425430_+|3-hydroxyacyl-CoA-dehydrogenase
MTAQPLQRIGLVGTGAMGRGIAQVMAMAGLKVFLFDARPGAAGTAREQLATIFAQQIEKARITPQDAAAAMLNLEVVDSLEALRDCQLVIEAIVENLEAKQQLFRQLEEVLAPSAILASNTSSLSITAIASVCRHPERVAGLHFFNPVPRMRIVEVVDGLATSVGARLQELVRAIGYYPARAKDSPGFIVNHAGRAFGTEALRILSEGVAPAWRIDALLRDSAGFAMGPFELLDLIGLDISVPVMESIYRQFYEEPRYRPHPVLRLMQAGGHLGRKSGQGFYLYDEPGDTRRPPQAVPHCAVLPPVWIVADDEVGRLRLLDLLERLGAKVENGLRPSTSALCLVAPLGDDATEAALRHATDPSRTVAIDTLTTLDSQRCLMLNPATREDMQHAAHALFSADGGTVTLIRDSCGFIVQRTLASIVNLACDIAQQGIASVADIDAAVRLGLGYPLGPLEWGDQLGPERLLQILERLHALTGDPRYRPSGWLRRRALLGLSLRQPENPLPA
>NZ_CP019399.1|WP_009046542.1|425465_426668_+|3-oxoadipyl-CoA-thiolase
MLDAYIYSGLRTPFGRHGGSLASVRPDDLVGPLLVRLLETSGLPVEALEEVILGCTNQAGEDSRNLARNALLSAGLPWRVPGQTVNRLCASGLSAVIDAARAITCGEGRLYLAGGVESMSRAPFIMAKAESAYSRTLDVADSTIGARFANPKLVERYGNHSMPETGDNLARRFAISREDADRFAAASQARYQEALLAGGLDDEIMAVEVPIGRKGQSLTVCDDEHPRPRSDLAALSRLPTLFAEGVVTAGNASGINDGAAVLLLGSREIGMEHGVAPMARILSSASVGVEPQFMGIGPHRAILLALQRARIGLEQLDLIEINEAFAPQVLACLKALNLDFDDPRVNPNGGAIAIGHPLGASGARLVLSACRTLQRNHQRYAVVSLCVGVGQGVAMVIERA
>NZ_CP019399.1|WP_124301059.1|426809_427925_+|bifunctional-transcriptional-activator/DNA-repair-protein-Ada
MDNAPLLFQLPDDDTLYRALLERDPAYDGFAFVGVKSTGVFCRLTCAARKPKRENTVFFSSIKACVEAGFRACLRCRPLEQTGVQEPLVKQLLALLEHNADKRWYEGDLIELGFDPSTVRRAFKRHFGVTFLEMARLRRIGEGMQQLAGGASVIDAQISASFDSDSGFRSAFTRLLGQPPSNLRGRELLKADWLQTPIGVMLAVADAQALHLLEFFDRPALATELKRLQEHTGSTIGFGRFAPIDQIESELRRFFAGESASFATPLALNASAFTRTVWQALRAIPPGVTRSYAEVASSIGSASAVRAVARANGANQIAIVIACHRVIGSDGSLTGYGGGLWRKRWLLEHERRLYSQIQARQHLRADEPVAG

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Crispr_ID: NZ_CP019399_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019399_2

3205713-3205870

Orphan

Consensus_repeat	Method
GGGCGCCGCGGTTTGTCTGGTGCTGCGCGTTATCGTTCATCGCGGGCAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019399_2

>merge|NZ_CP019399|2|3205713-3205870|CRISPRCasFinder
GGGCGCCGCGGTTTGTCTGGTGCTGCGCGTTATCGTTCATCGCGGGCAAGCCTCGCTCCTACACAAGCATGTGCATTCTCTGTAGGCGCGAGGCTTGCCCACGATGGGGGCGCCGCGGTTTGTCTGGTGCTGCGCGTTATCGTTCATCGCGAGCAAGC

>NZ_CP019399|2|2|3205713-3205870|CRISPRCasFinder
GGGCGCCGCGGTTTGTCTGGTGCTGCGCGTTATCGTTCATCGCGGGCAAGC	CTCGCTCCTACACAAGCATGTGCATTCTCTGTAGGCGCGAGGCTTGCCCACGATGG
GGGCGCCGCGGTTTGTCTGGTGCTGCGCGTTATCGTTCATCGCGAGCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019399.1\|WP_124301521.1\|3202564_3203518_-\|D-2-hydroxyacid-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|240646
NZ_CP019399.1\|WP_124301520.1\|3198697_3200494_-\|malto-oligosyltrehalose-trehalohydrolase	unknown	unknown	gnl\|CDD\|274114
NZ_CP019399.1\|WP_124301522.1\|3203540_3204566_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP019399.1\|WP_009048832.1\|3210186_3210642_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176854
NZ_CP019399.1\|WP_009048829.1\|3206864_3207248_-\|copper-homeostasis-periplasmic-binding-protein-CopC	unknown	unknown	gnl\|CDD\|377255
NZ_CP019399.1\|WP_124301519.1\|3196607_3198701_-\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|237737
NZ_CP019399.1\|WP_124301518.1\|3193824_3196611_-\|malto-oligosyltrehalose-synthase	unknown	unknown	gnl\|CDD\|237740
NZ_CP019399.1\|WP_016704757.1\|3211170_3211701_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019399.1\|WP_124301523.1\|3205133_3205583_-\|DUF411-domain-containing-protein	unknown	unknown	gnl\|CDD\|225564
NZ_CP019399.1\|WP_124301516.1\|3191203_3193372_-\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|131155
NZ_CP019399.1\|WP_124301527.1\|3212877_3213795_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161
NZ_CP019399.1\|WP_007928588.1\|3214216_3214405_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019399.1\|WP_009048834.1\|3211762_3212758_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381302
NZ_CP019399.1\|WP_124301525.1\|3207305_3208235_-\|copper-resistance-protein-B	unknown	unknown	gnl\|CDD\|377498
NZ_CP019399.1\|WP_009048837.1\|3214424_3214805_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223806
NZ_CP019399.1\|WP_124301524.1\|3205946_3206861_-\|copper-homeostasis-membrane-protein-CopD	unknown	unknown	gnl\|CDD\|224195
NZ_CP019399.1\|WP_009048831.1\|3208231_3210064_-\|copper-resistance-system-multicopper-oxidase	unknown	unknown	gnl\|CDD\|273649
NZ_CP019399.1\|WP_053268952.1\|3200508_3202077_-\|glycogen-synthase-GlgA	unknown	unknown	gnl\|CDD\|234809
NZ_CP019399.1\|WP_016704753.1\|3204699_3205137_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|224159
NZ_CP019399.1\|WP_124301517.1\|3193485_3193803_-\|DUF2934-domain-containing-protein	unknown	unknown	gnl\|CDD\|378572

Protein	Function_ID	Function_description	E-value
NZ_CP019399.1\|WP_124301521.1\|3202564_3203518_-\|D-2-hydroxyacid-dehydrogenase-family-protein	gnl\|CDD\|240646	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	2.59225e-176
NZ_CP019399.1\|WP_124301520.1\|3198697_3200494_-\|malto-oligosyltrehalose-trehalohydrolase	gnl\|CDD\|274114	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP019399.1\|WP_124301522.1\|3203540_3204566_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.34852e-27
NZ_CP019399.1\|WP_009048832.1\|3210186_3210642_-\|SRPBCC-family-protein	gnl\|CDD\|176854	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	3.72284e-14
NZ_CP019399.1\|WP_009048829.1\|3206864_3207248_-\|copper-homeostasis-periplasmic-binding-protein-CopC	gnl\|CDD\|377255	pfam04234, CopC, CopC domain. CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm.	2.84936e-24
NZ_CP019399.1\|WP_124301519.1\|3196607_3198701_-\|4-alpha-glucanotransferase	gnl\|CDD\|237737	PRK14507, PRK14507, malto-oligosyltrehalose synthase.	1.91035e-164
NZ_CP019399.1\|WP_124301518.1\|3193824_3196611_-\|malto-oligosyltrehalose-synthase	gnl\|CDD\|237740	PRK14511, PRK14511, malto-oligosyltrehalose synthase.	0
NZ_CP019399.1\|WP_124301523.1\|3205133_3205583_-\|DUF411-domain-containing-protein	gnl\|CDD\|225564	COG3019, COG3019, Predicted metal-binding protein [General function prediction only].	2.75858e-55
NZ_CP019399.1\|WP_124301516.1\|3191203_3193372_-\|glycogen-debranching-protein-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP019399.1\|WP_124301527.1\|3212877_3213795_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.7193e-97
NZ_CP019399.1\|WP_009048834.1\|3211762_3212758_-\|aldo/keto-reductase	gnl\|CDD\|381302	cd19076, AKR_AKR13A_13D, AKR13A and AKR13D families of aldo-keto reductase (AKR). Schizosaccharomyces pombe aldo-keto reductase YakC is a founding member of aldo-keto reductase family 13 member A1 (AKR13A1). It catalyzes the reversible reduction of ketones to the respective alcohols using NADP(+) as a hydride donor. Rauvolfia serpentina PR is a founding member of aldo-keto reductase family 13 member D1 (AKR13D1). It catalyzes the NADPH-dependent reduction of the aldehyde perakine to yield the alcohol raucaffrinoline in the biosynthetic pathway of ajmaline in Rauvolfia, a key step in indole alkaloid biosynthesis. This family also includes Arabidopsis thaliana aldo-keto reductases, ALKR1-6.	0
NZ_CP019399.1\|WP_124301525.1\|3207305_3208235_-\|copper-resistance-protein-B	gnl\|CDD\|377498	pfam05275, CopB, Copper resistance protein B precursor (CopB). This family consists of several bacterial copper resistance proteins. Copper is essential and serves as cofactor for more than 30 enzymes yet a surplus of copper is toxic and leads to radical formation and oxidation of biomolecules. Therefore, copper homeostasis is a key requisite for every organism. CopB serves to extrude copper when it approaches toxic levels.	3.0478e-123
NZ_CP019399.1\|WP_009048837.1\|3214424_3214805_-\|hypothetical-protein	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	0.000613861
NZ_CP019399.1\|WP_124301524.1\|3205946_3206861_-\|copper-homeostasis-membrane-protein-CopD	gnl\|CDD\|224195	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism].	7.39954e-32
NZ_CP019399.1\|WP_009048831.1\|3208231_3210064_-\|copper-resistance-system-multicopper-oxidase	gnl\|CDD\|273649	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_CP019399.1\|WP_053268952.1\|3200508_3202077_-\|glycogen-synthase-GlgA	gnl\|CDD\|234809	PRK00654, glgA, glycogen synthase GlgA.	0
NZ_CP019399.1\|WP_016704753.1\|3204699_3205137_-\|DedA-family-protein	gnl\|CDD\|224159	COG1238, COG1238, Predicted membrane protein [Function unknown].	1.86287e-36
NZ_CP019399.1\|WP_124301517.1\|3193485_3193803_-\|DUF2934-domain-containing-protein	gnl\|CDD\|378572	pfam11154, DUF2934, Protein of unknown function (DUF2934). This bacterial family of proteins has no known function.	3.69048e-11

>NZ_CP019399.1|WP_124301523.1|3205133_3205583_-|DUF411-domain-containing-protein
MHNTLRLAALSALLVGSLAQAADLIPIDVHRDANCGCCKKWIEHLQANGFKVNDHVESNMSEVKQRLGVAPRLASCHTAVINGKFVEGHVPADQVLALSKRDDLLGVAAPGMPMGSPGMEMDGMPADAYQVIGLTKDGKDVVVADYPTH
>NZ_CP019399.1|WP_016704753.1|3204699_3205137_-|DedA-family-protein
MILTACLGLFLAAFGAATLLPLQSEAVLVGLLLNGQFNLWLLLAVATLGNVLGSLVNWWLGQRLERYKDRRWFPVGPRHLQTARNHYQRYGHWSLLLSWLPIIGDPLTLVAGVMGEPLKRFLLVVTLAKGARYGVLAWMTLGWVG
>NZ_CP019399.1|WP_124301522.1|3203540_3204566_-|alpha/beta-hydrolase
MSLSPTRWSLTRWLPALLLTAALPALAAQGPAYGPELQGFDYPYPLQHFAFESQGQALQMGYMDVPAKGTPNGRSVLLMHGKNFCGATWDSSIKALSDAGYRVIAADQIGFCTSSKPEHYQYSFQQLAQNTRQLLDRLGIQQISLLGHSTGGMLATRYALQYPEQVQQLALVNPIGLEDWKALGVPYRSVDQWYARELKLSAEGIRNYERSTYYGGRWKPEFERWVDMLAGLNQGPGHTRVAWNSALIYDMIFTQPVYYEFKDLKMPTLLLIGTADTTAIGSDIAPPAVKARIGNYQVLGKQVAGLIPHSTLIEFPGLGHAPQMEEPAQFHQALLGWLASH
>NZ_CP019399.1|WP_124301521.1|3202564_3203518_-|D-2-hydroxyacid-dehydrogenase-family-protein
MSVQIAVIDDWQDVARDVVDWSLLSGIGQVSFIHDYPSDTVAMSERLAPFEVICVMRERSRFDAALLRSLPRLKLLLTGGMRNAAIDLAAAASLGIQVCGTDSYKHAAPELTWALIMAQTRNLLSEASALRAGLWQQGLGGDLHGKTLGILGLGSIGQRVAQFGQVFGMRVIAWSENLTAERAAAAGVTYVNKQQLFEQADVLSVHLVLSERSRGLVDAQALAWMKPSALLVNTARGPIVDEAALISALERGRLAGAALDVFEQEPLPLDHPLRRLPNVLATPHVGYVSQQNYRQFFTQMIEDIQAWAAGQPIRQLG
>NZ_CP019399.1|WP_053268952.1|3200508_3202077_-|glycogen-synthase-GlgA
MTSAVLQTQGKHPLPLAGETASTSILAPGGKTSLPLIHHNPNRKKVLFVTSEIADLVKTGGLGDVSAALPRAMAHLHDVRLLIPGYRQVMHSENPIHIIGELGGHAALPACKIGRMDMPDGLVIYVLICPELYEREGTPYGANNGRDWPDNHIRFARLGLAAADIAANLAQIHWCPDLVHAHDWPAGLAPAYMHWRGQRTPTLFTIHNLAYQGVVSLASCPELGIPEHALQQEGMEFYGKLSFLKAGMAYASHITTVSATYAQEITTPAFGCGLDGFLASKTQQGLLSGIPNGIDESWDAATDPHLSTPFAIGDWQGKAANAAHVRRMFGLDPGSGPLFAVVSRLVYQKGLDLTEGVAEYIVKSGGQIAIIGRGEPEEEQAMRALAARFPGRIGVNIGFNETDARRMFAGSDFLLMPSRYEPCGLSQMYAQRFGSLPVARNTGGLADTIENGVTGFLFDESTVASYEEALSRAFKVFAYPQLLNAMRCRAMAAPFNWCKAVEPYAELYEQLVAKALGKSAKP
>NZ_CP019399.1|WP_124301520.1|3198697_3200494_-|malto-oligosyltrehalose-trehalohydrolase
MPSRTLETWPHGTVPLDAQRTRFALWAPDAQHVSVELEHGVSLPMLPQANGWFMVVGHCPPGTRYRFNIDNEIRVPDPASRAQDGDVHGPSLVVDPRAYRWQHPHWQGRPWHQAVIYELHVGVLGGYREVEKHLPRLAQLGITAIELMPLAEFPGDRNWGYDGVLPYAPEASYGSPDDLKHLIDCAHGLDLAVMLDVVYNHFGPDGNYLQHYAKAFFREDRHTPWGAAIDFRRQPVRDFFIDNALMWLLEYRFDGLRLDAVHAIDDPDFLSELAQRVRQRIDPARQVWLTVENEYNQASLLEQHFDAQWNDDGHNALHVLLTGETDAYYADFAKRPTEKLARCLSQGFAYQGHVTRHGTARGEPSGHLPPSAFVLFLQNHDQIGNRAFGERLVRLAEPQALRAATVLLLLSPMIPLLFMGDELAAPQPFLFFTSHHGELADAVREGRRGEFAAFSAFADPHKREQIPDPNAPDTFLASRPQADPAQGEQTLALYRQLLQLRREHIVPYLPGAEALGAEVLAEGALCARWRLGNGQELRIDLNLSPHQVEQRPSNAAQRLFDYPAQAFERLQQGHLAPYSALVSLGAAAPLPDLDGERP
>NZ_CP019399.1|WP_124301519.1|3196607_3198701_-|4-alpha-glucanotransferase
MSDAQLEILASRAGLAVDWIDANGRPQRVEPRVLRSVLASLGHPADNDQQIEASLRQLLQVQQSRQLPPLLTADAGQGLDLGHYFAPDTPCEIRLEDGSVLNLKLDANSMLPGLVPVGYQEVSIAGQHFTLAVAPERCYSVADAVDQATPRAWGLSVQLYSLRRSGDGGYGDTGALEDLVRVAGERGAEAIAISPLHAMFSSDTGRYSPYSPSSRLFLNSLYAAPGTILGERAWRSAIDASGLGPQLQQLEQQPMVDWPVAAQARQKVLRALYEGFCQGEHPLHQDFASFRHASGEALENHCRFEAIQAQRAARGESLDWREWPDAWRTPRSPALAHFAVEHASDIGFYAFCQWLIARCLERVQSTARSSGMGIGLIADLAVGADGGGSQAWSRQDELLAALTVGAPPDILNRQGQGWGISAFSPEGLVRNGFHAFIEMLRANFAHAGGLRIDHVMGLQRLWVIPLGAPPCDGAYLYYPVDDLLRLLTLESHRHQAIVLGEDLGTVPDGLREKLSARAMLGMRVLLFEQEHGTHFRPILDWPDNALATTSTHDLPTLNGWWQGRDIDWSARLGLVDASGETHWREHRQREREGLRHALSRDPQNFREAPHIATHEADQVVDASVRFLGHTRAPLVLLPLEDALGIDEQANLPGTLDSHPNWRRRLAGSSAALLDDPDAARRLELLACARLQAHERDR
>NZ_CP019399.1|WP_124301518.1|3193824_3196611_-|malto-oligosyltrehalose-synthase
MNQATTRPVRATLRLQFHRGFSLDDAVPLVPYFARLGISHLYASPLLCARAGSMHGYDVVDPTRVNPELGGEAALERLVRSLRQHDMGLLLDIVSNHMAVGGADNPWWQDLLRWGRLSPYGEFFDIQWHSPDPLMEGQLLLPFLGSDYGVALQEGTLRLCFDAERGEFHVEHYQHHFPICPSDYGELLRVPGELDAESAERLKPLADAFSTLRYQPDAHTQAEPLQRQLQDAASAPQVRAAIEQQLAQYDARQPEGFARLHALLEQQSYRLASWRTAADDINWRRFFDINELGGLRVERPAVFEATHGKIFQLIAAGLVDGLRIDHIDGLADPRGYCRKLRRRVDALRPGQHLPIYVEKILGTGETLRRDWCVDGSTGYEFMNQLSLLQHDPQGAEPLAELWSRHSERPAAFLEEARLARQQLLNGSLASDFESVAQALLQVARNDVMSRDLTLGAIRRALQELIVHFPVYRTYIGACGRSAADEAFFQQALQGARDTLGEADWPVLAYLQQWLGGRGWRQLPPGRQRKVLKHACVRFQQLTSPTAAKAVEDTALYRSAVLLSRNDVGFSTEQFCAPVEAFHAVCRERLATFPDNLLASATHDHKRGEDARARLAVLSELSPWYVAQVEHWRRLAQALRSDPQAPGAGDELILYQALLGSWPLELHSDDSQGLRDYARRLWQWQEKALREAKLHSSWAAANEAYESAVHQFIERLLLSPEGLPLRSAIGAAVQRIAPAGALNGLAQSLLRMTVPGVPDLYQGNEFWDFSLVDPDNRRPVDFATRQQALDPCGETMELLANWRDGRIKQALIAATLERRGEYPQLFRRGTYQPLEVQGRHADKVLAFMREHQGQRAVVIVPRLVAGLLESGAHPRVDAPDWGDTRVHLPFAAPGQNLKGLFSTGAVTPHKDLMISSALRDFPVNLFIQT
>NZ_CP019399.1|WP_124301517.1|3193485_3193803_-|DUF2934-domain-containing-protein
MSTDDKRIREFAYQIWESEGRPDGQEHRHWEMARKLAEAEALAPSKPPRATRAASAKPGKPAAKPKAVAKPAAAAPLVPPGEKVPPGGKSSTAKKPRAPRKPAAS
>NZ_CP019399.1|WP_124301516.1|3191203_3193372_-|glycogen-debranching-protein-GlgX
MTTSKTATTPKTSPATEPSRIREGLPFPLGATWDGLGVNFALFSANATKVELCLFDATGEVELERIELPEYTDEIFHGYLPDAHPGLIYGYRVHGPYDPANGHRFNPNKLLIDPYAKQLVGELKWSEALFGYTIGHPDADLSFDERDSAPFVPKCKVIDPAHTWGHDHRVSVPWDKTIIYETHVRGFTMRHPSVPEAVRGTFAGLMIDDVLEHIRKLGVSSVELLPIHAFVNDQHLLHKGMTNYWGYNSIAFFAPDPRYLASGKIAEFKEMVAHLHEAGLELILDVVYNHTAEGNEQGPTLSMRGIDNASYYRLMPDDKRFYINDSGTGNTLDLSHPCVLQMVTDSLRYWATEMHVDGFRFDLATILGRYHDGFDERHSFLVACRQDPVLRQVKLIAEPWDIGPGGYQVGGFPPGWVEWNDKFRDTVRAFWKGDDGQLADFAARMTASGEMFNQRGRRPYTSVNFVTAHDGFTLHDLVSYNDKHNEANDEDNQDGSNHNLSWNHGVEGPTDDPQINALRLRQMRNFFATLLLAQGTPMLVAGDEFARTQHGNNNAYCQDSEIGWVNWDLDDDGKSLLKFVKRLVKLRMAYPILRRGRFLVGNYNEDIGVKDVTWLAPDASEMTTEQWQDSHGRCLGMLLDGRAQETGIRRPGADATLLLVVNAHHDIVNFCLPEVPDGGFWTCMLDTNQPSVKGQERFEFGHQYSVTGRSLLLFELQHEGED
>NZ_CP019399.1|WP_124301524.1|3205946_3206861_-|copper-homeostasis-membrane-protein-CopD
MGELINVALRFALYLDLMLLFGLALFGLYGLRGAQSRRRFRRPLATTLVLGALLSGAALLQLVLSMSGATRLAELDPALVPVLVLETDVGQSWLLRLAALLLAGVLLLFSSGWSRFTLYGLILCTATALASLAWGGHGAMSEGGQRYLHLGSDILHLLGAGAWLGALAAFALLLRRGACEGEQQAGHLLDALKGFASLGTLIVVSLSLSGVLNYLLIVGPDLATLSASTYGLLLSLKVAVFASMLVFAALNRFHLVPQLEQALHRASPQAALPALRRSMLLELAAALLIVGLVAMLGILSPAPE
>NZ_CP019399.1|WP_009048829.1|3206864_3207248_-|copper-homeostasis-periplasmic-binding-protein-CopC
MSYLKHLAIAVTFGAGLTLAGVAQAHPKLLASTPAEGAKGAAPAKIELQFSEPLTTKFSGARLLMTGMPGMSHAPMPVKASVAGGSDPKSMIISPATPLPKGSYKVEWRAVSADTHPITGNLTFEVN
>NZ_CP019399.1|WP_124301525.1|3207305_3208235_-|copper-resistance-protein-B
MMPKNALTLFAALLGLSAGPLQAAESMDHSSMDHSSMPASSMPGNPMPGMDHSQMTGMDGKPLQTMEPAAPTQSRTPIPVLTDADRRAAFPPMAGHGVHDKAINSLWLVDRLEYQDADDGSALAWEMNGWIGGDIDRLWLRSEGERTNGRTENAQVEALWGHAIGPWWDVVSGVRQDFKPGAPQTWAALGLQGMALYNFESQATAYLGEGGQSALGLQAEYDILLTNRLILQPNAEVSLYGKNDPQRGIGSGLSSLEAGLRLRYELHRQFAPYVGVTWSRSYGKTADYAREEGEDSSEARLVLGVRLWF
>NZ_CP019399.1|WP_009048831.1|3208231_3210064_-|copper-resistance-system-multicopper-oxidase
MHVKPTRRSFIKGLAAGGVLAGTGLWQQPLWARSEDGQLPALSGQQFDLFIGESQVNYSGTSRTAMTINGGLPGPLLRWREGDTVTIRVRNRLKEDTSIHWHGLILPANMDGVPGLSFHGIAPDGLYEYRFKVRQNGTYWYHSHSGLQEQAGVYGPLVIEAREPEPFQYDRDYVVMLSDWSDEAPERLMHILKKQPGYYNFHKRTVGDFIEDVSRDGWAATLADRKMWAQMKMTPTDLADVSGYTYTYLINGQSPGGNWTGLFKPGEKLRLRLINGSAMSYFDLRIPGLKMTVVAADGQYVQPVSVDELRIAVAETYDVLVEPGSQEAYTLFAQAMDRSGYARGTLSQRPGLSATVPPLDPRPLISMADMGMDHGSMAGMDMGAMPGMDHGQMQGMDHSQMQGMDSSNMAGMDHSGMAGMSGMDHGAMGGAMQSHPASEDGNPLVDMQTMSPTPKLADPGIGLRNNGRRVLTYADLRSTFEDPDGREPSRTIELHLTGHMEKFSWSFDGIKFSDAEPLRLTYGERVRITLVNDTMMTHPIHLHGMWSDLEDEQGRFLVRKHTIDMPPGSKRSYRVTADALGRWAYHCHLLFHMEMGMFREVRVDEAGSAA
>NZ_CP019399.1|WP_009048832.1|3210186_3210642_-|SRPBCC-family-protein
MEQRQQHLLDELIFHELYIDAPIDTVYYYVTQPDRWHEWHPASLRADTGLAGSLPAGHRFSKTIDLLGLQIHMSCRVLVAVFPKEFKIVFSSPPADGSIHYQLCKYGDGTLFKRTLHYCSDLNLVSLRPRIEHLSQLAMVNLKRNLEKIAH
>NZ_CP019399.1|WP_016704757.1|3211170_3211701_+|hypothetical-protein
MTIGYVGGWTSKAGLLVQDTGTRGKPVSQSVKVKQMLALVGQNPLALNVFKMDEMKLHKQIKGFDPENISAKQLGNMSTFLKQKGLISDVTAMTLLNAGDKFDRFGVQSDPDAKFNALEYFAIQLDNIQTNNLKGNKYASYLIPEYKKAIYVLQNLQSYGKGNGTTVTDKNHSAKA
>NZ_CP019399.1|WP_009048834.1|3211762_3212758_-|aldo/keto-reductase
MQTRQLGKNGPQVSAIGLGCMGMTDFYTTGTDTREATATLHRALELGINLLDTADMYGPHSNEILIGQAIRGKRDQVFLASKFGIVRDPGDPAARGVNGRPDYIRQAIDGTLQRLGVETLDLYYQHRIDPDVAIEETVGAMAELVQAGKVRYLGLSEASAATLERAHKVHPISALQSEYSLWSRDQEDNGCLAACQRLGIAFVPYSPLGRGFLTGALKSPEDFAADDYRRFSPRFQGENFTKNLLLVEQVKQLAVAKGITTGQLALAWVLAQGDYLIPIPGTKQRKYLEENVAALQVHLSADELLALERIFSPDATAGERYPQAVMALLDR
>NZ_CP019399.1|WP_124301527.1|3212877_3213795_+|LysR-family-transcriptional-regulator
MDRFNAMRVFTRIVDLGGFAKAADSLQMPRASVTVLIKQLEAHLGVQLLLRTTRQVTPTLDGAAYYQRCVRLLADLEETEAVFSVARHNPRGTLRIDMPAGIGRLVVIPALPAFSERYPLIDLEIGLNDRPVDLIREGVDCVLRGGLCLDDSLVARPLLALEQVTCASPAYLRQRGVPQSLDDLAGHQMIEYFSSVSGKRYGLEFEVQGQVLLPELPKQVSVNSADGYLAACEAGYGLVQTPYYHVAQQLAEGRLIEVLRHIPPPRMPLSALYPPHRHLSTRVRVFVDWLVELFAQLGIHNTRLA
>NZ_CP019399.1|WP_007928588.1|3214216_3214405_+|hypothetical-protein
MTQKQRLIYSIVISLVVLGIMLGLSYLQNAGMITEKMFQYIAIGVAVTVVVINGVMRRKVKP
>NZ_CP019399.1|WP_009048837.1|3214424_3214805_-|hypothetical-protein
MYDPQLPTDGHTAQPASSLNAGAGVFGKQAERNRNERIRHLLKSFGLRTSLIRLKVIDALLQAAENQRALGVRGIHSHLLELDIPLSFLSVREVLKRLCSEGVITLNADKSFSLHQQAEAILDGRD

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Crispr_ID: NZ_CP019399_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019399_3

5754841-5754992

Orphan

Consensus_repeat	Method
CCAAGGCCACCACGGACCTGTAGGAGCGAGGCTTGCCCGCGATAGCGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019399_3

>merge|NZ_CP019399|3|5754841-5754992|CRISPRCasFinder
CCAAGGCCACCACGGACCTGTAGGAGCGAGGCTTGCCCGCGATAGCGGTACCTCAGACACACCGCATAGCCCCAATCGCCGGCAAGCCTGGCTCCTACAGAAGCCAAGGCCACCACGGACTTGTAGGAGCGAGGCTTGCCCGCGATAGCGGT

>NZ_CP019399|3|3|5754841-5754992|CRISPRCasFinder
CCAAGGCCACCACGGACCTGTAGGAGCGAGGCTTGCCCGCGATAGCGGT	ACCTCAGACACACCGCATAGCCCCAATCGCCGGCAAGCCTGGCTCCTACAGAAG
CCAAGGCCACCACGGACTTGTAGGAGCGAGGCTTGCCCGCGATAGCGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019399.1\|WP_009050581.1\|5753422_5754820_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP019399.1\|WP_009050586.1\|5760375_5761014_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP019399.1\|WP_124302104.1\|5761041_5761476_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240046
NZ_CP019399.1\|WP_053269817.1\|5764585_5764882_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380355
NZ_CP019399.1\|WP_028683290.1\|5762539_5764159_+\|FMN-binding-glutamate-synthase-family-protein	unknown	unknown	gnl\|CDD\|239202
NZ_CP019399.1\|WP_009050572.1\|5744176_5744551_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|235094
NZ_CP019399.1\|WP_009050576.1\|5747515_5748235_+\|MtnX-like-HAD-IB-family-phosphatase	unknown	unknown	gnl\|CDD\|319826
NZ_CP019399.1\|WP_009050582.1\|5755052_5756087_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP019399.1\|WP_028683288.1\|5759826_5760336_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP019399.1\|WP_009050574.1\|5745111_5745978_-\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|366126
NZ_CP019399.1\|WP_016703457.1\|5764227_5764512_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP019399.1\|WP_016703444.1\|5748227_5749622_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|223238
NZ_CP019399.1\|WP_009050573.1\|5744583_5744982_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|185011
NZ_CP019399.1\|WP_124302101.1\|5750514_5751642_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379214
NZ_CP019399.1\|WP_009050578.1\|5749618_5750500_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224561
NZ_CP019399.1\|WP_016703453.1\|5761712_5761985_-\|type-B-50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
NZ_CP019399.1\|WP_124302100.1\|5746502_5747285_-\|MipA/OmpV-family-protein	unknown	unknown	gnl\|CDD\|377682
NZ_CP019399.1\|WP_009050584.1\|5758875_5759793_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176132
NZ_CP019399.1\|WP_124302102.1\|5751638_5753426_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236901
NZ_CP019399.1\|WP_124302103.1\|5756454_5758767_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|235367

Protein	Function_ID	Function_description	E-value
NZ_CP019399.1\|WP_009050581.1\|5753422_5754820_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP019399.1\|WP_009050586.1\|5760375_5761014_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	5.54499e-47
NZ_CP019399.1\|WP_124302104.1\|5761041_5761476_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240046	cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	4.16719e-48
NZ_CP019399.1\|WP_053269817.1\|5764585_5764882_+\|cupin-domain-containing-protein	gnl\|CDD\|380355	cd02226, cupin_YdbB-like, Bacillus subtilis YdbB and related proteins, cupin domain. This family includes bacterial proteins homologous to YdbB, a Bacillus subtilis protein of unknown function. It also includes protein Nmb1881 From Neisseria meningitidis, also of unknown function. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	0.000146084
NZ_CP019399.1\|WP_028683290.1\|5762539_5764159_+\|FMN-binding-glutamate-synthase-family-protein	gnl\|CDD\|239202	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.	7.98097e-178
NZ_CP019399.1\|WP_009050572.1\|5744176_5744551_+\|EamA-family-transporter	gnl\|CDD\|235094	PRK02971, PRK02971, 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional.	2.47159e-06
NZ_CP019399.1\|WP_009050576.1\|5747515_5748235_+\|MtnX-like-HAD-IB-family-phosphatase	gnl\|CDD\|319826	cd07524, HAD_Pase, phosphatase, similar to Bacillus subtilis MtnX; belongs to the haloacid dehalogenase-like superfamily. Bacillus subtilis recycles two toxic byproducts of polyamine metabolism, methylthioadenosine and methylthioribose, into methionine by a salvage pathway. The sixth reaction in this pathway is catalyzed by B. subtilis MtnX: the dephosphorylation of 2- hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HKMTP- 1-P) into 1,2-dihydroxy-3-keto-5-methylthiopentene. The hydrolysis of HK-MTP-1-P is a two-step mechanism involving the formation of a transiently phosphorylated aspartyl intermediate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.55453e-32
NZ_CP019399.1\|WP_009050582.1\|5755052_5756087_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.89945e-25
NZ_CP019399.1\|WP_028683288.1\|5759826_5760336_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.25779e-15
NZ_CP019399.1\|WP_009050574.1\|5745111_5745978_-\|fatty-acid-desaturase	gnl\|CDD\|366126	pfam00487, FA_desaturase, Fatty acid desaturase.	3.0259e-19
NZ_CP019399.1\|WP_016703457.1\|5764227_5764512_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	1.02503e-26
NZ_CP019399.1\|WP_016703444.1\|5748227_5749622_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|223238	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism].	3.22268e-107
NZ_CP019399.1\|WP_009050573.1\|5744583_5744982_+\|EamA-family-transporter	gnl\|CDD\|185011	PRK15051, PRK15051, 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional.	9.62894e-08
NZ_CP019399.1\|WP_124302101.1\|5750514_5751642_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379214	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions.	5.70681e-06
NZ_CP019399.1\|WP_009050578.1\|5749618_5750500_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	6.89738e-21
NZ_CP019399.1\|WP_016703453.1\|5761712_5761985_-\|type-B-50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	2.29455e-47
NZ_CP019399.1\|WP_124302100.1\|5746502_5747285_-\|MipA/OmpV-family-protein	gnl\|CDD\|377682	pfam06629, MipA, MltA-interacting protein MipA. This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex.	5.02608e-32
NZ_CP019399.1\|WP_009050584.1\|5758875_5759793_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176132	cd08441, PBP2_MetR, The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold. MetR, a member of the LysR family, is a positive regulator for the metA, metE, metF, and metH genes. The sulfur-containing amino acid methionine is the universal initiator of protein synthesis in all known organisms and its derivative S-adenosylmethionine (SAM) and autoinducer-2 (AI-2) are involved in various cellular processes. SAM plays a central role as methyl donor in methylation reactions, which are essential for the biosynthesis of phospholipids, proteins, DNA and RNA. The interspecies signaling molecule AI-2 is involved in cell-cell communication process (quorum sensing) and gene regulation in bacteria. Although methionine biosynthetic enzymes and metabolic pathways are well conserved in bacteria, the regulation of methionine biosynthesis involves various regulatory mechanisms. In Escherichia coli and Salmonella enterica serovar Typhimurium, MetJ and MetR regulate the expression of methionine biosynthetic genes. The MetJ repressor negatively regulates the E. coli met genes, except for metH. Several of these genes are also under the positive control of MetR with homocysteine as a co-inducer. In Bacillus subtilis, the met genes are controlled by S-box termination-antitermination system. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.93436e-124
NZ_CP019399.1\|WP_124302102.1\|5751638_5753426_+\|HAMP-domain-containing-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	2.08726e-53
NZ_CP019399.1\|WP_124302103.1\|5756454_5758767_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	gnl\|CDD\|235367	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional.	0

>NZ_CP019399.1|WP_009050581.1|5753422_5754820_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MTHNLLVVDDEPKLCDLLSSALSQDGIQVFTAGNGLHALKVLEQEEIDLVISDWRMPGMDGPQLLAEVKQRYPQIPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKALQFRDILKDNQRMRAELDEHRQIDSLVGDSPTFRRVLQAVDSVRESNATILLTGESGTGKEMVARAIHQHGNRANKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDEVGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYRLNVFPIPLPALRERVEDIAPLARHFAHTLGATAGKRITGFSPQALQAMANYAWPGNIRELQNCVERATIVAAGAVIEESDLPGYLFSSPPLNAGASALPGDSLSVPSDLDAALAEVEKAYILAALQQSNGVQAAAAQLIGISERSFWYRLKKLGIQVDKIVR
>NZ_CP019399.1|WP_124302102.1|5751638_5753426_+|HAMP-domain-containing-protein
MTRKDLRTPRPFAISRWSLQRKLVLAFWMVSVIPTMIAAELAATTLSQIFDSNVRIWLQESTKIVEDEITETLRDNARIAQLFLRYARPPTDRNAAKHDKLTADIADSMGIDVVALIRKRDHQVVFSTAADDIVGQISLAHNAVLQTLQVGGVATGAVVSTFQTTLDGIDYQLLIATYLDASFLTSVADVHSLDLRLYLAKANDFAEIFATQRFEDHPTQVPEKIENILRDTRQPTEQFTSRYSGLYRPIFNDSGELVGVIFSGLLRHSSLVGLVNQSNLFILIFLLSSAASLAVGWLVSKRLTMPLRGLSKGVQAVIAGDYRQRVPVIGGDELAELSSTFNHMSERLGELQHLEAQLRRRDRLHALGEVAMGLAHEIRNPLGIIKTATQLLHRRADLPEGDKRHLEYVISEVSRINDLITDFLDFAKPSAPIRSTLLARPLVEELIGFCEPELASHKIDAQIDDQAPGATLYADARQLKQACLNLILNAIDAMPAGGRLTLGIAQDAEHTILRVTDTGQGIEPDMLERIFTPFVTTKASGTGLGLAKVFSIMENHDGHIECSSEIDAGATFSLYIPAKGEDDEEDDENEQKAQP
>NZ_CP019399.1|WP_124302101.1|5750514_5751642_+|GNAT-family-N-acetyltransferase
MITSQVFSSIQAIDRSAWNDCFPGALENWDYYLAVQDAGIEDFTWRYLAVFEDEKLVAAAPAFITRYRLDTTVSGPAKRLSERLQRWWPGLLQLPLYAIGSPVAEQCHAGTASHIPAVRRQTLLGQLLHLARRDADAQGIGLLAVKDAASQDRQWAASCQAFGLQAMPSLPSALLPVPFGSQDAYLGTLGKSTRKDLRRKLRAPGPRIEWRRNIDDVLPQVMRLYEATLRRSDLQFERLPAPYFTGILQHLGERAACVLYWVDQQLVAFNLVLLDEHRLIDKFFAHDLEISREHNLYLRSWMANVDYCIQHRIALYECGQAGYASKLRLGCSFTGNSLFFQHRNPLLDTLLKGLKYVLRPDRTDPAMAAALSESS
>NZ_CP019399.1|WP_009050578.1|5749618_5750500_+|alpha/beta-fold-hydrolase
MTAQIDPGAGIDLGQGDAGFILGNGEVAVLLIHGLTGTPTELRRVAVGLAQAGCTVYVPTLAGHCGNNADLQATGWQDWYEGVRRTFVGIRQRHRQVFVGGLSMGAVMSMYLASEHPGQVSGLLMYSTTLKYDGWSINKLAFLTPLLMKIPFGVHICSFEEKPPYGIKNKRLRAVVERQMKAGESSSAGLLTMEGVTVRELHRMNAVVKKRMPSITTPALVLHSIEDDITSRWNADYVERKLGGPVVKVLLDNCYHMITVDLQYRRVVELSADFIERQAGPRPAVYDDQRQFA
>NZ_CP019399.1|WP_016703444.1|5748227_5749622_+|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MSDIRIATAEDQVLLEKEAKYCSYGDTVHYIEPPRIFSRCEGSYVWDTSDQAYLDLQMWYSAVNFGYANPRLNNALKQQIDTLPQIASQYLHKGKIELSEMIAVDAKKKFGLDGRVHFNVGGSQSIEDSLKVVRNATHGKSLMFAFEGGYHGRTLGASSITSSYRYRRRYGHFGERANFIPFPYHFRGPKGMTKEEYGSHCVQQFARLFETEYNGVWDPKVGQSEYAAFYVEPIQGTGGYVIPPMNFYSELKHVLDQHGILMVVDEIQMGFYRTGKLWSIEHFDVKPDVIVFGKALTNGLNPLGGIWAREELINPKVFPPGSTHSTFASNPLGTAVGLEMFKMTSEIDYGAMVMEKGKYFLAGLQDLQKRYPIIGDVDGLGLALRCEICTTDGFTPDKATLDYMVEEGMKGDIEINGQRLGLILDVGGYYKNVITLAPSLEISYAEIDLGIALLDRLLDRAMKR
>NZ_CP019399.1|WP_009050576.1|5747515_5748235_+|MtnX-like-HAD-IB-family-phosphatase
MMHWHIVCDFDGTITRTDVIDNVLQRFADPSWEDIEQQWLDGHIGSRECLSRQLALVKASPAELLACFDSVEIDPDFPDFVDHVIGLGASLEVVSDGIEQGIARILARHYVSLLPILANRLRQVDQNSWRIDFPHASDACRAASGNCKCKSTPKGKRVLVIGDGQSDMCVAASADFVFAKGRLAEYCQRNAIPHATFDSFAELPALLALLPNEAANAGAFALDNTTEHCVPTQELFHHV
>NZ_CP019399.1|WP_124302100.1|5746502_5747285_-|MipA/OmpV-family-protein
MFSFTRSALLAVLLSLGAACGAFAEEGGQDGLSGSLGLGIGYQPHDPSGSRHDTVPLPYVDLEWGDVSLDTDDGLTWDAFKGNGFSAGPYINYLPGRNANGSLRGLRDVPNMADVGGYIQYAPDDFWRLFASIGSAVAAGEGQGGLLGKVGGEIGYPLGLGIIGSNNLTAHFADARQTQTFFGISDAEAQATGIGRYSAGGGLQNLTLTQNLQVPLGGNWSWMTSASWIHLTGSAADSTLVRERGEVNQGQVQTALSYQF
>NZ_CP019399.1|WP_009050574.1|5745111_5745978_-|fatty-acid-desaturase
MARPAYRLLAHSLWDIVPILMALAHFSFVLWLVLAFHSLSWWVILPAALLYAVSLSWSINSISHNQIHNAYFSLPWLNRAFDLLLSVTIGFSQTLYRDIHNRHHRGNSDRPGADGTTVDPLSIYLHGRNGQPDNVWAYTFLSFFRDDPKAIYQEMQRKRPADARWVKVEIGVTVLAYVALALYDWHALLVLLPFWYLGQSLSSLNGYYEHLGGNPDLPIAWGVSSYSRLYNLIWMNNGYHAEHHYRPKMHWTRVKAFHREIREQQRAAGVKVIPLAHGLGFLLKHPKP
>NZ_CP019399.1|WP_009050573.1|5744583_5744982_+|EamA-family-transporter
MTAQTHGWLHGRLGTLVLWALLIGFESAGQIATKVGGDQLGQMDFNLQWLAAVAVNPGVLLAIACYIGAFFVWMLILRRSSLSLAFPLSSLVFVVVLLGSWLGLGEQISLLHWVGVLVIIGGIALLAEGEEA
>NZ_CP019399.1|WP_009050572.1|5744176_5744551_+|EamA-family-transporter
MTLTVILLVAFSIVLDVIGQLCFKLGLDRLPELEGGFRLNAFWGQVFNAPLLWCGIGAYVIEFFVWLEALSRAPLSLLFPAAALAYCGVVLAGKLILGENVSRRRWLGTLVITLGVMLVCVAST
>NZ_CP019399.1|WP_009050582.1|5755052_5756087_-|alpha/beta-hydrolase
MWARFFSTTVFLAALLLGLPSQAASRCDVNVPTQRVELEQVSLAYQSIGRASDPALLLVMGLGGQLIHWPDEVVVALCQQGFRVIRYDNRDVGLSTWRQAPANANLTFEVLRYKLGLPVAAPYSLTDMADDALGLMNALQVEQFHVLGASMGGMIAQHLAAMAPQRVESLTLIMTSSGAEGLPAPNAALVQLLSRRGAPNREVALEQQADLLAALGSPQVTDDRQALLHQAAEAYDRAFNPEGVKRQIMAILAEPSRVALLNQLRVPTLVVHGTADPLLPVMHGVHLAAHIQGSQLKLIPGLAHRFQEAFKAPLLAAVLPYLQSHREDTSHWAQIDPLPAPNLL
>NZ_CP019399.1|WP_124302103.1|5756454_5758767_-|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase
MALAHTLGFPRIGADRELKKALEAYWKGDLDWQALQDVGRQLRARHWQLQKDAGIDLLPVGDFAWYDQVLTHSLAFGVVPERFDSSKDAQGRPTLDTLFAMARGASAGCCGGDQAKTQYAQELTKWFDTNYHYLVPEFSADQSFKLSWEQLFDEVDEAHALGHRVKPVIIGPLTYLWLGKAKGNDFDKLELLERLLPVYGEILNRLKAQGVEWVQIDEPILTLDLPQAWKGAFERAYHILQYSPLKKLVATYFSGLQDNLGLAVGLPVDGLHIDAVRAPEQLTQVLDRLPTYKILSVGLVNGRNVWRCELEQALQQLQAAQERFGDNLWVSSSCSLLHSPVDLAREDQLDAELKSWLAFAVQKCGEISVLRDALNDPQAPAVQAALAASRQVQASRAQSPRIHKAEVQARLKAVSAADSQRHSPFAQRIAQQHARLKLPVFPTTTIGSFPQTASIRLARQAFKQGKLSNNDYTDAMRCEIRHAVQVQERLGLDVLVHGEAERNDMVEYFAEQLDGYLFTRFGWVQSYGSRCVKPAVIYGDLSRPQAMTVDWISYAQSLTDKVMKGMLTGPVTMLMWSFPREDVSREVQARQLALALRDEVVDLEKAGIKIVQIDEAAFREGLPLRRADWQPYLDWAVEAFRLTASGVRDDTQIHTHMCYSEFNDVIQAIAAMDADVITIETSRSDMELLEAFEAFDYPNDIGPGVYDIHSPRVPDTAEMVKLMSKAARRIPAERLWVNPDCGLKTRAWPETEAALVNMVAAARQLRNQQA
>NZ_CP019399.1|WP_009050584.1|5758875_5759793_+|LysR-family-transcriptional-regulator
MLEIRHLKTLHALREADSLVEAAERLHLTQSALSHQFKELEERMGMPLFVRKTKPVRFTSAGLRLLQLADATLPLLRAAERDISRLAGGTAGRLHMAIECHSCFQWLMPTIDQFRDAWPEVELDLASGFSFAPLPALARGDLDLVVTSDPVELAGITYVPLFTYEAMLAVANQHRLASKPYIVPEDLLSETLITYPVERDRLDIFTRFLEPADIEPAQVRTSELTVMMMQLVASGRGVCGMPHWALHEYSSRGYVKAKRLGEKGLFATLYAAIRADMLDAPYMRDFLLTAKDTSFSTLDGVSAVR
>NZ_CP019399.1|WP_028683288.1|5759826_5760336_-|GNAT-family-N-acetyltransferase
MSIQHLDASHAAAYRALMLEAYERHPQAFTSSVAERAAMPLSWWESRLSSPLDLLLGAFEGGELVGIVGLAFEVREKARHKATLFGLYVAQPYRHGGLGYRLVQALLQEARQRPGVRLVQLTVTAGNDAALALYQRCGFVQFGLEPLAVRVGVEYFDKLHLWREVVSPL
>NZ_CP019399.1|WP_009050586.1|5760375_5761014_-|LysE-family-translocator
MIPLHDMLIFIAAALLMVLTPGPNMIYLISRSICQGRRAGVTSLVGVVAGFFVHLFAAAIGLTAVFMAVPVAYEVLKWVGALYLMWLAWQALKPGARSPFEAQQLPPDSSRKLILMGFLTSALNPKIAVFYLSVFPQFISPEHGSVFTQSIILGLTQISVSFSVNLLIALFASGIAAWFVHNPLWLATQRYFMGFVLAGLAVRLLLEQRQTA
>NZ_CP019399.1|WP_124302104.1|5761041_5761476_-|NUDIX-domain-containing-protein
MTLSSATSPLIRIAAALLIGPDGRTLLVRKRGTQAFMQPGGKIEPSELPAQALARELEEELGLRIDPADARYLGRFCAPAANEPGFVVEAELFRLDLDTDEVRPAAEIEEVRWIDPEAGDELTLAPLTRDLILPFYRASQLASA
>NZ_CP019399.1|WP_016703453.1|5761712_5761985_-|type-B-50S-ribosomal-protein-L31
MKANIHPAYRTVLFHDTAADVYFLIGSTVDTDRTQRHSDGNTYPYVALDVSSASHPVYTGQQRKTQSEGRIAGFNKRFASFGSSGKTGNA
>NZ_CP019399.1|WP_028683290.1|5762539_5764159_+|FMN-binding-glutamate-synthase-family-protein
MSLSLLSRYAFFAACVIFTLASLPFLEHDWLWPFTLVTFLLSLLGIFDLLQSPHAVRRNYPILGNIRYLVEGIRPEIRQYLLESDSDALPFSRAQRSLVYSRAKNESADKPFGTLIDVYQSGFEFIGHSMRPAPLSDPSTFRVTVGGPQCKQPYSASVFNISAMSFGSLSANAIRALNQGAKLGNFAHDTGEGSISPYHRENGGDLTWELGSGYFGCRTSDGRFDPERFAQQAQNPQVRMIEIKMSQGAKPGHGGILPKHKVTQEIADTRGIRMGEDCISPSSHSAFSTPIEMMHFIQQLRELSGGKPVGFKFCLGHPWEFMGIAKAMLETGILPDFIVVDGKEGGTGAAPVEFTDHIGAPMREGLLFVHNTLVGLNLRDKIKLGASGKIVSAFDIASVLAIGADWANSARGFMFAIGCIQSQSCHTNKCPTGVATQDNLRQRALVVPDKAQRVFSFHRNTLKALAEMLAAAGLNHPSQLEARHLVRRMSATEIKLFSQLHVFLKPGELLTGAVTGEFYSRMWQLARADSFEPNSEAAA
>NZ_CP019399.1|WP_016703457.1|5764227_5764512_+|antibiotic-biosynthesis-monooxygenase
MLKVIAEDFIKPEHLDTVRPWYAELLEKTRQEPDCIAYDLFVDQQDPGHFIFIEQWPDRAALKAHCQTEHFTRLVPQINAFQARECRVLLMDEF
>NZ_CP019399.1|WP_053269817.1|5764585_5764882_+|cupin-domain-containing-protein
MPLLSFDSLSSQLPTSWKSSVVGQVGPARIKVLRMDQQAHAEESHDYNEALLVTHGCLRLGIAGSQVRVNAGQMYLVEAGLPHAVLPGSHGTLVIIDI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1318341 : 1426504

111

Pseudomonas_phage(40.35%)

tail,lysis,holin,tRNA,plate,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162098622.1\|1318341_1319157_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	6.6e-08	33.0
WP_009047204.1\|1319256_1319661_-	SufE family protein	NA	NA	NA	NA
WP_103330486.1\|1319657_1320863_-	cysteine desulfurase	Q2XUY6	environmental_halophage	1.2e-71	37.4
WP_009047206.1\|1320939_1321974_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_009047207.1\|1322008_1322371_-	ArsC family reductase	NA	NA	NA	NA
WP_016705305.1\|1322597_1324244_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_009047209.1\|1324353_1325553_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_038630713.1\|1325592_1328295_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_009047211.1\|1328342_1329125_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_007924078.1\|1329532_1330273_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_009042383.1\|1330477_1331344_+	elongation factor Ts	NA	NA	NA	NA
WP_007924076.1\|1331552_1332296_+	UMP kinase	NA	NA	NA	NA
WP_009047212.1\|1332292_1332850_+	ribosome recycling factor	NA	NA	NA	NA
WP_009047213.1\|1332866_1333622_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	1.0e-18	38.8
WP_028681758.1\|1333621_1334428_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_124301186.1\|1334424_1335615_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_016705310.1\|1335667_1337020_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_009047217.1\|1337094_1339482_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_007924063.1\|1339527_1340031_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_009047218.1\|1340034_1341090_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_007924058.1\|1341199_1341640_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_007924057.1\|1341636_1342413_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_164485210.1\|1342412_1343546_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_016705311.1\|1343557_1344190_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.7e-27	38.9
WP_009047221.1\|1344259_1347784_+	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	1.4e-195	38.0
WP_038630718.1\|1347924_1348872_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_038630719.1\|1348991_1350320_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_007924045.1\|1350594_1352226_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	6.9e-158	53.5
WP_124303477.1\|1352231_1353077_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	9.4e-50	42.8
WP_009047225.1\|1353234_1354524_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	9.0e-137	59.2
WP_007924039.1\|1354696_1354975_+	cell division protein FtsB	NA	NA	NA	NA
WP_124303479.1\|1354971_1355679_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_009047227.1\|1355848_1356745_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_007924035.1\|1356851_1357964_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	8.3e-30	27.2
WP_162473255.1\|1358046_1358898_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_007924033.1\|1358950_1359424_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_009047228.1\|1359420_1360479_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_009047229.1\|1360466_1361216_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-68	52.6
WP_172833404.1\|1361257_1361893_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.3e-40	51.2
WP_007924027.1\|1362102_1362936_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	6.3e-06	33.3
WP_007924026.1\|1363042_1364047_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
WP_007924025.1\|1364548_1364872_-	ferredoxin family protein	NA	NA	NA	NA
WP_038630722.1\|1365014_1367594_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	3.1e-27	23.5
WP_164485924.1\|1367781_1368516_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	4.1e-126	91.5
WP_038630724.1\|1369071_1369500_+\|tail	tail fiber assembly protein	NA	NA	NA	NA
WP_080768771.1\|1369663_1369852_+	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	4.5e-13	82.9
WP_009047292.1\|1369860_1370442_+	DUF642 domain-containing protein	NA	NA	NA	NA
WP_009047293.1\|1370544_1370892_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	1.0e-50	87.7
WP_041985726.1\|1371058_1371823_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	2.0e-06	26.3
WP_081362548.1\|1372048_1372573_+	hypothetical protein	NA	NA	NA	NA
WP_041985721.1\|1372576_1373185_+\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	1.8e-47	59.1
WP_007924012.1\|1373198_1373531_+\|plate	phage baseplate protein	A0A2H4JI46	uncultured_Caudovirales_phage	2.1e-37	69.1
WP_124301188.1\|1373527_1374523_+\|plate	baseplate J/gp47 family protein	A0A2H4JC04	uncultured_Caudovirales_phage	8.9e-108	62.3
WP_124301189.1\|1374519_1375254_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	3.4e-40	51.4
WP_038581744.1\|1375250_1375781_+\|tail	tail fiber protein	A2I2X8	Vibrio_virus	3.4e-50	61.9
WP_124301190.1\|1375907_1376690_+\|tail	phage tail protein	NA	NA	NA	NA
WP_038581740.1\|1376692_1376995_+	hypothetical protein	Q8H9M8	Vibrio_phage	1.8e-11	64.6
WP_041985711.1\|1377081_1377303_+	hypothetical protein	NA	NA	NA	NA
WP_041985709.1\|1377305_1378472_+\|tail	tail protein	B0ZSG8	Halomonas_phage	1.4e-125	57.5
WP_038581734.1\|1378471_1378978_+\|tail	phage major tail tube protein	Q6R4W3	Vibrio_virus	2.6e-23	35.7
WP_016701995.1\|1379104_1379716_+\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	1.5e-25	36.4
WP_124301191.1\|1379844_1382052_+\|tail	phage tail tape measure protein	A0A2H4JAA5	uncultured_Caudovirales_phage	7.2e-09	49.3
WP_016702001.1\|1382051_1382435_+\|tail	phage tail protein	A0A2H4JAC8	uncultured_Caudovirales_phage	4.0e-40	59.8
WP_009042420.1\|1382427_1382640_+\|tail	tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	6.9e-18	61.4
WP_016702002.1\|1382649_1383666_+	hypothetical protein	A0A2H4JH05	uncultured_Caudovirales_phage	1.0e-106	56.6
WP_124301192.1\|1383808_1384393_+	hypothetical protein	B5TK65	Pseudomonas_phage	3.1e-76	72.5
WP_007923975.1\|1384389_1384572_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	6.5e-25	93.3
WP_038630744.1\|1384571_1386068_+\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	2.0e-257	91.0
WP_007923973.1\|1386134_1386482_+\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	2.9e-58	93.9
WP_007923972.1\|1386478_1386775_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	2.3e-43	94.9
WP_124301193.1\|1386905_1388981_+\|tail	phage tail protein	B5TK70	Pseudomonas_phage	1.8e-38	48.2
WP_016702007.1\|1388967_1390206_+	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	5.7e-181	75.7
WP_009047313.1\|1390209_1391250_+	hypothetical protein	B5TK72	Pseudomonas_phage	3.8e-162	82.7
WP_009047314.1\|1391366_1391876_+\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	2.2e-78	88.8
WP_009047315.1\|1391875_1392274_+	phage GP46 family protein	B5TK74	Pseudomonas_phage	1.7e-65	89.4
WP_038630748.1\|1392263_1393304_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	3.0e-167	87.3
WP_053268352.1\|1393291_1393891_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	2.5e-105	91.0
WP_124301194.1\|1393902_1394757_+	hypothetical protein	B5TK77	Pseudomonas_phage	1.5e-23	76.4
WP_124301195.1\|1394761_1395403_+	hypothetical protein	B5TK78	Pseudomonas_phage	1.4e-37	51.9
WP_038630754.1\|1395534_1396455_+	hypothetical protein	B5TK77	Pseudomonas_phage	7.4e-24	61.1
WP_124301196.1\|1396454_1396934_+	hypothetical protein	A0A291LAV4	Bordetella_phage	1.3e-11	52.1
WP_124344844.1\|1397093_1397996_+\|tail	phage tail protein	B5TK81	Pseudomonas_phage	2.4e-35	37.6
WP_124301198.1\|1398005_1398476_+\|tail	phage tail protein	Q9ZXK5	Pseudomonas_virus	6.6e-21	47.3
WP_080710484.1\|1398547_1399288_+	hypothetical protein	B5TK77	Pseudomonas_phage	2.1e-21	65.8
WP_051673120.1\|1399290_1399722_+	hypothetical protein	Q9ZXK5	Pseudomonas_virus	2.2e-23	38.4
WP_023969836.1\|1399767_1400331_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	3.7e-87	83.3
WP_038630760.1\|1400312_1400849_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	6.3e-60	71.3
WP_023969838.1\|1400931_1401432_+	CinA family protein	B5TK85	Pseudomonas_phage	1.0e-72	86.1
WP_007923942.1\|1401515_1402568_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	4.4e-113	60.9
WP_009047326.1\|1402576_1403044_+	recombination regulator RecX	NA	NA	NA	NA
WP_016702021.1\|1403089_1404205_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_009047328.1\|1404688_1404883_+	hypothetical protein	NA	NA	NA	NA
WP_007923938.1\|1404884_1405307_-	quorum-sensing-regulated virulence factor family protein	NA	NA	NA	NA
WP_016702022.1\|1405496_1406207_+	DTW domain-containing protein	NA	NA	NA	NA
WP_009047330.1\|1406541_1407192_+	response regulator transcription factor	NA	NA	NA	NA
WP_009047331.1\|1407268_1407631_+	diacylglycerol kinase	NA	NA	NA	NA
WP_009047332.1\|1407627_1408554_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009047333.1\|1408687_1409467_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_038630763.1\|1409539_1410235_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_038630765.1\|1410321_1411092_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_009047336.1\|1411225_1411687_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	8.5e-37	51.3
WP_009047337.1\|1411753_1412464_-	RNA-binding protein S4	NA	NA	NA	NA
WP_009047338.1\|1412546_1413020_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_016702026.1\|1413126_1414464_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_009047341.1\|1414795_1416697_+	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	4.8e-78	34.8
WP_016702028.1\|1416896_1417172_-	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_038581682.1\|1417669_1418965_-	virulence factor family protein	NA	NA	NA	NA
WP_009047343.1\|1418964_1421613_-	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
WP_124301199.1\|1422551_1423616_+	DNA polymerase IV	NA	NA	NA	NA
WP_038630767.1\|1423817_1424771_-	hypothetical protein	NA	NA	NA	NA
WP_124301200.1\|1424788_1426504_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_2

2273470 : 2357060

uncultured_Caudovirales_phage(63.89%)

tail,portal,holin,tRNA,head,integrase,plate,protease,capsid,terminase

attL 2270643:2270659|attR 2302827:2302843

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2270643:2270659	attL	NA	NA	NA	NA
WP_124344873.1\|2273470_2274490_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_124344874.1\|2274592_2275690_+\|integrase	site-specific integrase	L7TP61	Pseudomonas_virus	4.3e-156	73.8
WP_124334366.1\|2275967_2276417_+	hypothetical protein	NA	NA	NA	NA
WP_124334367.1\|2276462_2276735_-	pyocin activator PrtN family protein	A0A2K8HN48	Pseudomonas_phage	5.9e-22	60.7
WP_124344876.1\|2276731_2278888_-	DNA cytosine methyltransferase	Q5QF27	Pseudomonas_virus	1.4e-254	60.2
WP_124344877.1\|2280088_2280310_-	hypothetical protein	NA	NA	NA	NA
WP_124344878.1\|2280306_2280711_-	hypothetical protein	NA	NA	NA	NA
WP_124344879.1\|2280759_2281077_-	pyocin activator PrtN family protein	NA	NA	NA	NA
WP_124344880.1\|2281235_2281520_-	phage antirepressor KilAC domain-containing protein	NA	NA	NA	NA
WP_124344881.1\|2281530_2282121_-	hypothetical protein	NA	NA	NA	NA
WP_164487390.1\|2282117_2282294_-	hypothetical protein	NA	NA	NA	NA
WP_124344882.1\|2282461_2283787_+	hypothetical protein	NA	NA	NA	NA
WP_124344883.1\|2283851_2284577_-	peptidase S24	A8CGC0	Salmonella_phage	6.0e-29	37.9
WP_124344884.1\|2284655_2284916_+	hypothetical protein	A0A0D4DBS7	Acinetobacter_phage	7.2e-09	44.7
WP_164487391.1\|2285249_2285768_+	hypothetical protein	NA	NA	NA	NA
WP_124344886.1\|2285760_2285988_+	TraR/DksA family transcriptional regulator	A2I309	Vibrio_virus	3.2e-05	39.5
WP_124344887.1\|2285977_2288194_+	conjugal transfer protein TraC	A0A2D1GN57	Marinobacter_phage	3.2e-190	47.1
WP_124344888.1\|2288186_2288549_+	hypothetical protein	NA	NA	NA	NA
WP_124344889.1\|2289067_2289412_+\|holin	pyocin R2, holin	A0A2H4J893	uncultured_Caudovirales_phage	1.4e-44	82.4
WP_124344890.1\|2289557_2290157_+\|terminase	terminase small subunit	A0A2H4JG15	uncultured_Caudovirales_phage	2.9e-61	67.4
WP_124344891.1\|2290161_2292183_+\|terminase	phage terminase large subunit family protein	A0A2H4J898	uncultured_Caudovirales_phage	0.0e+00	83.9
WP_124302631.1\|2292184_2292391_+	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	2.2e-21	72.1
WP_124344892.1\|2292390_2293872_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	5.7e-244	84.4
WP_124344893.1\|2293868_2295014_+\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	2.4e-141	70.6
WP_124344894.1\|2295010_2295355_+\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	1.5e-46	86.0
WP_124344895.1\|2295518_2296514_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	8.5e-167	87.3
WP_124344896.1\|2296516_2296831_+	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	3.7e-28	58.7
WP_124344897.1\|2296827_2297490_+	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	4.0e-72	63.3
WP_124344898.1\|2297482_2298013_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	2.4e-43	55.2
WP_124344899.1\|2298009_2298591_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	5.1e-55	65.1
WP_124344900.1\|2298634_2298850_+	hypothetical protein	NA	NA	NA	NA
WP_009047523.1\|2298852_2299179_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	6.2e-34	65.1
WP_124344901.1\|2299175_2300057_+\|plate	baseplate J/gp47 family protein	A0A2H4JFK9	uncultured_Caudovirales_phage	7.6e-111	69.3
WP_038630873.1\|2300058_2300667_+\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	1.4e-79	72.2
WP_159298932.1\|2300659_2302219_+\|tail	phage tail protein	A0A077K818	Ralstonia_phage	4.4e-69	53.7
WP_124303961.1\|2302230_2302662_+\|tail	phage tail protein	Q9ZXK5	Pseudomonas_virus	5.0e-23	46.8
WP_124303960.1\|2302759_2303926_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	2.9e-182	81.8
2302827:2302843	attR	NA	NA	NA	NA
WP_124303959.1\|2303938_2304448_+\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	4.3e-66	73.1
WP_075118901.1\|2304475_2304772_+\|tail	phage tail assembly protein	A0A2H4J873	uncultured_Caudovirales_phage	2.7e-20	57.4
WP_124344902.1\|2304903_2307444_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	2.8e-81	37.8
WP_124303957.1\|2307453_2308299_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	6.6e-88	58.2
WP_039967809.1\|2308273_2308480_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	7.1e-20	68.7
WP_124303956.1\|2308537_2309590_+	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	9.3e-148	74.9
WP_124303955.1\|2309613_2310165_+	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	5.5e-67	68.7
WP_124344903.1\|2310435_2310660_+	hypothetical protein	NA	NA	NA	NA
WP_159298933.1\|2310709_2311237_-	hypothetical protein	NA	NA	NA	NA
WP_159298934.1\|2312084_2313215_+	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	4.2e-21	28.0
WP_159298935.1\|2313216_2314023_+	hypothetical protein	NA	NA	NA	NA
WP_124344908.1\|2314886_2315549_+	hypothetical protein	NA	NA	NA	NA
WP_038631251.1\|2316274_2316913_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_038631253.1\|2317007_2317862_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_038631255.1\|2317914_2318403_-	hypothetical protein	NA	NA	NA	NA
WP_110177236.1\|2318660_2320223_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_110177237.1\|2320226_2320817_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_101282064.1\|2321004_2321841_+	arylamine N-acetyltransferase	NA	NA	NA	NA
WP_009048082.1\|2321853_2322276_-	DUF4952 domain-containing protein	NA	NA	NA	NA
WP_009048083.1\|2322337_2322757_-	hypothetical protein	NA	NA	NA	NA
WP_009048084.1\|2322996_2324535_+	purine permease	NA	NA	NA	NA
WP_009048085.1\|2324590_2325748_-	MFS transporter	NA	NA	NA	NA
WP_053268595.1\|2326656_2326890_+	hypothetical protein	NA	NA	NA	NA
WP_023968605.1\|2326896_2327091_-	hypothetical protein	NA	NA	NA	NA
WP_038631265.1\|2327225_2328422_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_007923725.1\|2328757_2330773_+	excinuclease ABC subunit B	NA	NA	NA	NA
WP_007922014.1\|2331013_2332495_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_009048089.1\|2333428_2333968_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_038631269.1\|2333997_2334831_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_009048091.1\|2334879_2335317_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_009048092.1\|2335435_2336395_+\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA
WP_007922004.1\|2336516_2336963_+	Hsp20 family protein	A0A1D8KN82	Synechococcus_phage	2.9e-18	37.0
WP_038631271.1\|2337148_2337847_+	DUF1266 domain-containing protein	NA	NA	NA	NA
WP_124301283.1\|2337843_2340528_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_038631275.1\|2340524_2342216_-	molecular chaperone HscC	M4R062	Micromonas_pusilla_virus	1.1e-78	38.9
WP_038631277.1\|2342324_2345603_-	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	3.8e-14	31.2
WP_124301284.1\|2345684_2346575_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009043027.1\|2346720_2348139_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_009048098.1\|2348149_2348794_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_053268603.1\|2349022_2350105_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_007921989.1\|2350159_2351272_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_009048100.1\|2351456_2352467_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_124301285.1\|2352669_2355267_+	FimV family protein	NA	NA	NA	NA
WP_016704911.1\|2355345_2356005_-	aminopeptidase P family protein	NA	NA	NA	NA
WP_038631281.1\|2356235_2357060_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA

DBSCAN-SWA_3

3933888 : 3976485

uncultured_Caudovirales_phage(28.57%)

transposase,tail,integrase,lysis

attL 3931983:3931998|attR 3937612:3937627

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3931983:3931998	attL	NA	NA	NA	NA
WP_038632844.1\|3933888_3934827_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_103331553.1\|3935006_3936041_+	DNA-binding protein	NA	NA	NA	NA
WP_124345034.1\|3936037_3937396_-	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	1.7e-48	28.3
WP_009049342.1\|3937527_3938367_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	3.9e-64	46.8
3937612:3937627	attR	NA	NA	NA	NA
WP_016702449.1\|3938660_3938849_+	hypothetical protein	NA	NA	NA	NA
WP_007921741.1\|3939004_3939286_+	hypothetical protein	NA	NA	NA	NA
WP_007921740.1\|3939298_3939529_-	hypothetical protein	NA	NA	NA	NA
WP_038632853.1\|3939597_3940521_-	c-type cytochrome	NA	NA	NA	NA
WP_038636667.1\|3940517_3941189_-	cytochrome c4	NA	NA	NA	NA
WP_009049346.1\|3941373_3941724_-	hypothetical protein	NA	NA	NA	NA
WP_007921735.1\|3941900_3942203_+	DUF1883 domain-containing protein	NA	NA	NA	NA
WP_007921734.1\|3942237_3942408_+	hypothetical protein	NA	NA	NA	NA
WP_124345035.1\|3942510_3943227_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_124345036.1\|3943216_3943891_+	DNA oxidative demethylase AlkB	NA	NA	NA	NA
WP_101282644.1\|3943978_3945052_+	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	6.0e-17	51.1
WP_009049350.1\|3945015_3945504_-	GyrI-like domain-containing protein	NA	NA	NA	NA
WP_124313697.1\|3945553_3946537_-	oxidoreductase	NA	NA	NA	NA
WP_124313698.1\|3946864_3947929_+	nitronate monooxygenase	NA	NA	NA	NA
WP_164486786.1\|3948147_3948870_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009049354.1\|3948870_3949551_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_038632869.1\|3949554_3950643_+	molybdenum ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.8e-22	32.7
WP_124313700.1\|3950905_3952546_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	2.2e-23	24.7
WP_009049357.1\|3952616_3952826_+	hypothetical protein	NA	NA	NA	NA
WP_009049358.1\|3953069_3953390_-	YbjQ family protein	NA	NA	NA	NA
WP_124313701.1\|3953600_3953927_+	isochorismate lyase	NA	NA	NA	NA
WP_016704205.1\|3953990_3954191_-	hypothetical protein	NA	NA	NA	NA
WP_009049361.1\|3954305_3954509_-	hypothetical protein	NA	NA	NA	NA
WP_009049362.1\|3954915_3955275_+	osmotically-inducible lipoprotein OsmE	NA	NA	NA	NA
WP_124301723.1\|3955509_3956715_+\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	3.3e-109	53.7
WP_103331776.1\|3957039_3957552_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_009049364.1\|3957976_3958408_-	RcnB family protein	NA	NA	NA	NA
WP_124301722.1\|3958523_3958997_+	hypothetical protein	NA	NA	NA	NA
WP_016703118.1\|3959463_3959871_-	hypothetical protein	NA	NA	NA	NA
WP_115344067.1\|3960018_3960207_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_038632879.1\|3960127_3960445_+	hypothetical protein	NA	NA	NA	NA
WP_009049368.1\|3960746_3961076_+	hypothetical protein	NA	NA	NA	NA
WP_080710562.1\|3961246_3961675_+	N-acetyltransferase	A0A1X9I6I8	Streptococcus_phage	1.0e-20	34.8
WP_124301723.1\|3961724_3962930_-\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	3.3e-109	53.7
WP_038632885.1\|3963095_3963482_-	DUF5329 domain-containing protein	NA	NA	NA	NA
WP_124345037.1\|3963550_3964006_-	hypothetical protein	NA	NA	NA	NA
WP_174248204.1\|3964096_3964489_+	hypothetical protein	NA	NA	NA	NA
WP_007921689.1\|3964804_3964954_-	hypothetical protein	NA	NA	NA	NA
WP_038578458.1\|3965147_3965384_-	YceK/YidQ family lipoprotein	NA	NA	NA	NA
WP_028682452.1\|3967197_3967494_+	hypothetical protein	NA	NA	NA	NA
WP_124299702.1\|3968770_3969121_+	hypothetical protein	NA	NA	NA	NA
WP_124315155.1\|3969481_3970273_-	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_124315156.1\|3970556_3971102_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_124340311.1\|3971112_3971895_+	hypothetical protein	NA	NA	NA	NA
WP_135006675.1\|3971879_3972248_+	hypothetical protein	NA	NA	NA	NA
WP_124315159.1\|3972275_3972512_+	hypothetical protein	NA	NA	NA	NA
WP_124315160.1\|3972577_3973372_-	DNA adenine methylase	C7BGE1	Burkholderia_phage	1.5e-102	66.5
WP_124315161.1\|3973523_3974066_-\|lysis	lysis protein	B5TK84	Pseudomonas_phage	6.5e-28	47.8
WP_159298961.1\|3974065_3974617_-	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	7.2e-67	68.1
WP_159298962.1\|3974640_3975693_-	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	3.2e-148	74.9
WP_039967809.1\|3975749_3975956_-\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	7.1e-20	68.7
WP_159299221.1\|3975930_3976485_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	8.0e-66	63.9

DBSCAN-SWA_4

4434722 : 4440981

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009049761.1\|4434722_4435115_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.7e-59	84.6
WP_009049762.1\|4435118_4435481_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.9e-44	75.0
WP_009049763.1\|4435480_4435780_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.1e-32	69.7
WP_016701877.1\|4435776_4436112_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.9e-46	82.0
WP_038633620.1\|4436108_4437110_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.8e-164	84.1
WP_038633623.1\|4437199_4438207_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_038633625.1\|4438305_4439700_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_009049768.1\|4439700_4440981_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.1e-101	55.1

DBSCAN-SWA_5

6040614 : 6050819

Pseudomonas_phage(77.78%)

tail,integrase

attL 6033591:6033606|attR 6056655:6056670

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
6033591:6033606	attL	NA	NA	NA	NA
WP_159299134.1\|6040614_6041856_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	2.6e-64	37.7
WP_159299135.1\|6042034_6042577_+	hypothetical protein	NA	NA	NA	NA
WP_159299136.1\|6042681_6042951_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_159299137.1\|6042950_6043250_+	hypothetical protein	NA	NA	NA	NA
WP_159299138.1\|6043246_6043930_+	KilA-N domain-containing protein	H6WRZ8	Salmonella_phage	9.3e-40	58.4
WP_146218544.1\|6043926_6044409_+	hypothetical protein	A0A1B0VP73	Pseudomonas_phage	2.1e-46	67.1
WP_159299139.1\|6044405_6044717_+	hypothetical protein	NA	NA	NA	NA
WP_159299140.1\|6044713_6044959_+	hypothetical protein	NA	NA	NA	NA
WP_110176164.1\|6044955_6045285_+	hypothetical protein	NA	NA	NA	NA
WP_174248227.1\|6045567_6045795_+	hypothetical protein	A0A1B0VRK9	Pseudomonas_phage	2.6e-31	85.3
WP_110176165.1\|6045791_6046673_+	toprim domain-containing protein	A0A1B0VML8	Pseudomonas_phage	2.6e-143	88.7
WP_159299141.1\|6046659_6048453_+	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	0.0e+00	90.0
WP_159299142.1\|6048449_6048812_+	hypothetical protein	NA	NA	NA	NA
WP_159299143.1\|6049119_6049725_+	hypothetical protein	A0A1B0VMK2	Pseudomonas_phage	5.0e-53	53.2
WP_159299144.1\|6049837_6050218_+	hypothetical protein	A0A1B0VML3	Pseudomonas_phage	1.0e-35	63.1
WP_135006935.1\|6050228_6050819_+\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	2.2e-58	62.5
6056655:6056670	attR	NA	NA	NA	NA

DBSCAN-SWA_6

6581053 : 6641649

Burkholderia_phage(25.0%)

transposase,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009046547.1\|6581053_6582259_+\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	4.4e-109	53.7
WP_009045922.1\|6582333_6582780_-	response regulator	NA	NA	NA	NA
WP_101283763.1\|6583033_6584974_+	CBS domain-containing protein	NA	NA	NA	NA
WP_041984830.1\|6584970_6585678_+	3'-5' exonuclease	NA	NA	NA	NA
WP_041984832.1\|6585952_6586471_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_124302214.1\|6586467_6587454_+	FecR family protein	NA	NA	NA	NA
WP_124302215.1\|6587684_6590114_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_081359566.1\|6590178_6591312_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_009045929.1\|6591308_6591497_+	hypothetical protein	NA	NA	NA	NA
WP_028684196.1\|6591474_6591897_-	hypothetical protein	NA	NA	NA	NA
WP_110175316.1\|6592008_6592638_+	glutathione S-transferase	NA	NA	NA	NA
WP_101283779.1\|6592844_6594221_-	cell envelope integrity protein CreD	NA	NA	NA	NA
WP_124302216.1\|6594501_6595923_-	two-component system sensor histidine kinase CreC	NA	NA	NA	NA
WP_041984848.1\|6595922_6596603_-	two-component system response regulator CreB	W8CYM9	Bacillus_phage	1.5e-29	36.1
WP_007926027.1\|6596672_6597173_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_124345211.1\|6597482_6598370_+	acyltransferase	NA	NA	NA	NA
WP_009051218.1\|6598370_6598943_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_009045939.1\|6599313_6600513_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	6.5e-12	29.3
WP_009051219.1\|6600694_6601552_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_009051220.1\|6601712_6602345_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_038636201.1\|6602478_6605496_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_009051222.1\|6605492_6605822_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_009051223.1\|6605978_6607229_-	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_009051224.1\|6607252_6608506_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.9e-99	53.0
WP_124345212.1\|6608949_6609693_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_009051226.1\|6609917_6610958_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_124302219.1\|6611125_6612571_+	cytosine permease	NA	NA	NA	NA
WP_124302220.1\|6612567_6613392_+	carbon-nitrogen hydrolase	M1HUK8	Acanthocystis_turfacea_Chlorella_virus	1.5e-20	36.7
WP_124302221.1\|6613529_6614354_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_009051230.1\|6614482_6615583_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_009051232.1\|6615867_6617163_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_038636189.1\|6618005_6618776_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_124302222.1\|6618791_6620012_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_038636183.1\|6620011_6621961_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_009051236.1\|6622124_6624185_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_003228980.1\|6624200_6624731_-	hypothetical protein	NA	NA	NA	NA
WP_007926352.1\|6624893_6625871_-	membrane dipeptidase	NA	NA	NA	NA
WP_009051237.1\|6626098_6626500_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_009051238.1\|6626730_6626985_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	1.7e-23	64.3
WP_050899134.1\|6626923_6627292_+	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	5.0e-32	70.1
WP_038636180.1\|6627325_6627742_+	DUF3010 family protein	NA	NA	NA	NA
WP_016704212.1\|6627840_6628788_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_016704214.1\|6628981_6629926_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009051243.1\|6629999_6630887_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_038636178.1\|6631085_6632051_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_009051245.1\|6632199_6632676_+	thioesterase family protein	NA	NA	NA	NA
WP_038636176.1\|6632841_6634005_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_007925996.1\|6634362_6634623_+	hypothetical protein	NA	NA	NA	NA
WP_038636173.1\|6634685_6635132_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_009045963.1\|6635132_6636227_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_009051249.1\|6636798_6638175_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_009051250.1\|6638601_6639558_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_007925985.1\|6639628_6640474_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_016704219.1\|6640470_6641649_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.9e-26	37.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019399

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection