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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP047220 Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed3, complete sequence 1 crisprs NA 0 1 1 0
NZ_CP047221 Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP047218 Sphingobium yanoikuyae strain YC-JY1 chromosome, complete genome 1 crisprs RT,csa3,cas3,DEDDh,WYL,DinG 0 0 8 0
NZ_CP047222 Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed4, complete sequence 0 crisprs RT 0 0 0 0
NZ_CP047223 Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed5, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP047219 Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed1, complete sequence 0 crisprs RT 0 0 0 0

Results visualization

1. NZ_CP047220
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047220_1 56914-57003 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP047220_1 1.1|56938|42|NZ_CP047220|CRISPRCasFinder 56938-56979 42 NZ_CP047220 Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed3, complete sequence 56938-56979 0 1.0
NZ_CP047220_1 1.1|56938|42|NZ_CP047220|CRISPRCasFinder 56938-56979 42 NZ_AP017658 Sphingobium cloacae strain JCM 10874 plasmid pSCLO_4, complete sequence 34773-34814 1 0.976
NZ_CP047220_1 1.1|56938|42|NZ_CP047220|CRISPRCasFinder 56938-56979 42 NZ_CP053024 Sphingobium yanoikuyae strain YC-XJ2 plasmid p-C-Sy, complete sequence 10482-10523 1 0.976
NZ_CP047220_1 1.1|56938|42|NZ_CP047220|CRISPRCasFinder 56938-56979 42 NZ_CP005192 Sphingobium sp. MI1205 plasmid pMI3, complete sequence 31147-31188 2 0.952
NZ_CP047220_1 1.1|56938|42|NZ_CP047220|CRISPRCasFinder 56938-56979 42 NZ_CP005087 Sphingobium sp. TKS plasmid pTK3, complete sequence 20315-20356 2 0.952
NZ_CP047220_1 1.1|56938|42|NZ_CP047220|CRISPRCasFinder 56938-56979 42 NC_020562 Sphingomonas sp. MM-1 plasmid pISP1, complete sequence 159529-159570 2 0.952
NZ_CP047220_1 1.1|56938|42|NZ_CP047220|CRISPRCasFinder 56938-56979 42 NC_019376 Sphingobium fuliginis ATCC 27551 plasmid pPDL2, complete sequence 34847-34888 2 0.952
NZ_CP047220_1 1.1|56938|42|NZ_CP047220|CRISPRCasFinder 56938-56979 42 NZ_CP005193 Sphingobium sp. MI1205 plasmid pMI4, complete sequence 18238-18279 2 0.952
NZ_CP047220_1 1.1|56938|42|NZ_CP047220|CRISPRCasFinder 56938-56979 42 NC_020563 Sphingomonas sp. MM-1 plasmid pISP4, complete sequence 33102-33143 2 0.952
NZ_CP047220_1 1.1|56938|42|NZ_CP047220|CRISPRCasFinder 56938-56979 42 NZ_CP005088 Sphingobium sp. TKS plasmid pTK4, complete sequence 56281-56322 2 0.952
NZ_CP047220_1 1.1|56938|42|NZ_CP047220|CRISPRCasFinder 56938-56979 42 NZ_CP041020 Sphingobium fuliginis ATCC 27551 plasmid pSF3, complete sequence 43053-43094 2 0.952
NZ_CP047220_1 1.1|56938|42|NZ_CP047220|CRISPRCasFinder 56938-56979 42 NZ_CP041021 Sphingobium fuliginis ATCC 27551 plasmid pSF4, complete sequence 5424-5465 2 0.952
NZ_CP047220_1 1.1|56938|42|NZ_CP047220|CRISPRCasFinder 56938-56979 42 NZ_CP041021 Sphingobium fuliginis ATCC 27551 plasmid pSF4, complete sequence 24899-24940 2 0.952
NZ_CP047220_1 1.1|56938|42|NZ_CP047220|CRISPRCasFinder 56938-56979 42 NZ_CP015989 Sphingobium sp. EP60837 plasmid pEP2, complete sequence 169570-169611 2 0.952

1. spacer 1.1|56938|42|NZ_CP047220|CRISPRCasFinder matches to NZ_CP047220 (Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed3, complete sequence) position: , mismatch: 0, identity: 1.0

accgaccccaaaactcaccgaaggctaccctaaaactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccctaaaactcacgc	Protospacer
******************************************

2. spacer 1.1|56938|42|NZ_CP047220|CRISPRCasFinder matches to NZ_AP017658 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_4, complete sequence) position: , mismatch: 1, identity: 0.976

accgaccccaaaactcaccgaaggctaccctaaaactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaaaactcacgc	Protospacer
******************************.***********

3. spacer 1.1|56938|42|NZ_CP047220|CRISPRCasFinder matches to NZ_CP053024 (Sphingobium yanoikuyae strain YC-XJ2 plasmid p-C-Sy, complete sequence) position: , mismatch: 1, identity: 0.976

accgaccccaaaactcaccgaaggctaccctaaaactcacgc	CRISPR spacer
accgaccccaaaactcaccaaaggctaccctaaaactcacgc	Protospacer
*******************.**********************

4. spacer 1.1|56938|42|NZ_CP047220|CRISPRCasFinder matches to NZ_CP005192 (Sphingobium sp. MI1205 plasmid pMI3, complete sequence) position: , mismatch: 2, identity: 0.952

accgaccccaaaactcaccgaaggctaccctaaaactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaacactcacgc	Protospacer
******************************.** ********

5. spacer 1.1|56938|42|NZ_CP047220|CRISPRCasFinder matches to NZ_CP005087 (Sphingobium sp. TKS plasmid pTK3, complete sequence) position: , mismatch: 2, identity: 0.952

accgaccccaaaactcaccgaaggctaccctaaaactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaacactcacgc	Protospacer
******************************.** ********

6. spacer 1.1|56938|42|NZ_CP047220|CRISPRCasFinder matches to NC_020562 (Sphingomonas sp. MM-1 plasmid pISP1, complete sequence) position: , mismatch: 2, identity: 0.952

accgaccccaaaactcaccgaaggctaccctaaaactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaacactcacgc	Protospacer
******************************.** ********

7. spacer 1.1|56938|42|NZ_CP047220|CRISPRCasFinder matches to NC_019376 (Sphingobium fuliginis ATCC 27551 plasmid pPDL2, complete sequence) position: , mismatch: 2, identity: 0.952

accgaccccaaaactcaccgaaggctaccctaaaactcacgc	CRISPR spacer
accgaccccaaagctcaccgaaggctacccgaaaactcacgc	Protospacer
************.***************** ***********

8. spacer 1.1|56938|42|NZ_CP047220|CRISPRCasFinder matches to NZ_CP005193 (Sphingobium sp. MI1205 plasmid pMI4, complete sequence) position: , mismatch: 2, identity: 0.952

accgaccccaaaactcaccgaaggctaccctaaaactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaacactcacgc	Protospacer
******************************.** ********

9. spacer 1.1|56938|42|NZ_CP047220|CRISPRCasFinder matches to NC_020563 (Sphingomonas sp. MM-1 plasmid pISP4, complete sequence) position: , mismatch: 2, identity: 0.952

accgaccccaaaactcaccgaaggctaccctaaaactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaacactcacgc	Protospacer
******************************.** ********

10. spacer 1.1|56938|42|NZ_CP047220|CRISPRCasFinder matches to NZ_CP005088 (Sphingobium sp. TKS plasmid pTK4, complete sequence) position: , mismatch: 2, identity: 0.952

accgaccccaaaactcaccgaaggctaccctaaaactcacgc	CRISPR spacer
accgaccccaaaactcaccgaaggctaccccaacactcacgc	Protospacer
******************************.** ********

11. spacer 1.1|56938|42|NZ_CP047220|CRISPRCasFinder matches to NZ_CP041020 (Sphingobium fuliginis ATCC 27551 plasmid pSF3, complete sequence) position: , mismatch: 2, identity: 0.952

accgaccccaaaactcaccgaaggctaccctaaaactcacgc	CRISPR spacer
accgaccccaaagctcaccgaaggctacccgaaaactcacgc	Protospacer
************.***************** ***********

12. spacer 1.1|56938|42|NZ_CP047220|CRISPRCasFinder matches to NZ_CP041021 (Sphingobium fuliginis ATCC 27551 plasmid pSF4, complete sequence) position: , mismatch: 2, identity: 0.952

accgaccccaaaactcaccgaaggctaccctaaaactcacgc	CRISPR spacer
accgaccccaaagctcaccgaaggctacccgaaaactcacgc	Protospacer
************.***************** ***********

13. spacer 1.1|56938|42|NZ_CP047220|CRISPRCasFinder matches to NZ_CP041021 (Sphingobium fuliginis ATCC 27551 plasmid pSF4, complete sequence) position: , mismatch: 2, identity: 0.952

accgaccccaaaactcaccgaaggctaccctaaaactcacgc	CRISPR spacer
accgaccccaaagctcaccgaaggctacccgaaaactcacgc	Protospacer
************.***************** ***********

14. spacer 1.1|56938|42|NZ_CP047220|CRISPRCasFinder matches to NZ_CP015989 (Sphingobium sp. EP60837 plasmid pEP2, complete sequence) position: , mismatch: 2, identity: 0.952

accgaccccaaaactcaccgaaggctaccctaaaactcacgc	CRISPR spacer
accgaccccaaagctcaccgaaggctacccgaaaactcacgc	Protospacer
************.***************** ***********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 24677 : 60694 31 Megavirus(16.67%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP047218
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047218_1 2105794-2105894 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1938987 : 1947910 9 Burkholderia_virus(16.67%) tRNA,protease NA
DBSCAN-SWA_2 2749174 : 2760016 17 Pseudomonas_phage(33.33%) tail,head,capsid,protease,portal NA
DBSCAN-SWA_3 2955686 : 2961310 8 uncultured_Mediterranean_phage(66.67%) NA NA
DBSCAN-SWA_4 3112212 : 3147348 42 Paracoccus_phage(30.0%) tail,tRNA,head,capsid,protease,integrase,terminase,portal attL 3105778:3105794|attR 3128852:3128868
DBSCAN-SWA_5 4161528 : 4201045 35 Escherichia_phage(33.33%) transposase,integrase attL 4164103:4164117|attR 4204078:4204092
DBSCAN-SWA_6 4531027 : 4547571 12 Stenotrophomonas_phage(20.0%) transposase,integrase attL 4530238:4530252|attR 4546574:4546588
DBSCAN-SWA_7 4719370 : 4749966 38 Escherichia_phage(60.0%) transposase NA
DBSCAN-SWA_8 4821246 : 4919198 101 uncultured_Caudovirales_phage(33.33%) transposase,integrase attL 4876027:4876086|attR 4915163:4916043
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage