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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP047321 Staphylococcus aureus strain RJ1267 chromosome, complete genome 10 crisprs WYL,csa3,DEDDh,cas3,DinG 7 2 15 1
NZ_CP047322 Staphylococcus aureus strain RJ1267 plasmid unnamed, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP047321
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047321_1 151682-151766 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047321_2 686014-686164 Orphan NA
2 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047321_3 1704597-1704682 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047321_4 1708616-1708860 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047321_5 1922681-1922759 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047321_6 2030454-2030535 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047321_7 2089247-2089332 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047321_8 2094650-2094730 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047321_9 2253266-2253358 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047321_10 2526539-2526640 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP047321_1 1.1|151708|33|NZ_CP047321|CRISPRCasFinder 151708-151740 33 NZ_CP047321.1 1492790-1492822 0 1.0
NZ_CP047321_1 1.1|151708|33|NZ_CP047321|CRISPRCasFinder 151708-151740 33 NZ_CP047321.1 2694532-2694564 0 1.0
NZ_CP047321_1 1.1|151708|33|NZ_CP047321|CRISPRCasFinder 151708-151740 33 NZ_CP047321.1 1402511-1402543 0 1.0
NZ_CP047321_1 1.1|151708|33|NZ_CP047321|CRISPRCasFinder 151708-151740 33 NZ_CP047321.1 1779234-1779266 0 1.0
NZ_CP047321_3 3.1|1704627|26|NZ_CP047321|CRISPRCasFinder 1704627-1704652 26 NZ_CP047321.1 2694484-2694509 0 1.0
NZ_CP047321_6 6.1|2030478|34|NZ_CP047321|CRISPRCasFinder 2030478-2030511 34 NZ_CP047321.1 1402510-1402543 0 1.0
NZ_CP047321_6 6.1|2030478|34|NZ_CP047321|CRISPRCasFinder 2030478-2030511 34 NZ_CP047321.1 1492790-1492823 0 1.0
NZ_CP047321_1 1.1|151708|33|NZ_CP047321|CRISPRCasFinder 151708-151740 33 NZ_CP047321.1 2089166-2089198 1 0.97
NZ_CP047321_3 3.1|1704627|26|NZ_CP047321|CRISPRCasFinder 1704627-1704652 26 NZ_CP047321.1 2126229-2126254 1 0.962
NZ_CP047321_7 7.1|2089277|26|NZ_CP047321|CRISPRCasFinder 2089277-2089302 26 NZ_CP047321.1 1922678-1922703 1 0.962
NZ_CP047321_7 7.1|2089277|26|NZ_CP047321|CRISPRCasFinder 2089277-2089302 26 NZ_CP047321.1 2126285-2126310 1 0.962
NZ_CP047321_7 7.1|2089277|26|NZ_CP047321|CRISPRCasFinder 2089277-2089302 26 NZ_CP047321.1 2694484-2694509 1 0.962
NZ_CP047321_8 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder 2094676-2094704 29 NZ_CP047321.1 1050029-1050057 1 0.966
NZ_CP047321_8 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder 2094676-2094704 29 NZ_CP047321.1 2580155-2580183 1 0.966
NZ_CP047321_8 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder 2094676-2094704 29 NZ_CP047321.1 2580210-2580238 1 0.966
NZ_CP047321_3 3.1|1704627|26|NZ_CP047321|CRISPRCasFinder 1704627-1704652 26 NZ_CP047321.1 1922678-1922703 2 0.923
NZ_CP047321_3 3.1|1704627|26|NZ_CP047321|CRISPRCasFinder 1704627-1704652 26 NZ_CP047321.1 2126173-2126198 2 0.923
NZ_CP047321_3 3.1|1704627|26|NZ_CP047321|CRISPRCasFinder 1704627-1704652 26 NZ_CP047321.1 2126285-2126310 2 0.923
NZ_CP047321_4 4.4|1708805|37|NZ_CP047321|CRT 1708805-1708841 37 NZ_CP047321.1 809442-809478 2 0.946
NZ_CP047321_4 4.4|1708805|37|NZ_CP047321|CRT 1708805-1708841 37 NZ_CP047321.1 2663451-2663487 2 0.946
NZ_CP047321_4 4.4|1708805|37|NZ_CP047321|CRT 1708805-1708841 37 NZ_CP047321.1 2663507-2663543 2 0.946
NZ_CP047321_4 4.4|1708805|37|NZ_CP047321|CRT 1708805-1708841 37 NZ_CP047321.1 2663563-2663599 2 0.946
NZ_CP047321_5 5.1|1922704|33|NZ_CP047321|CRISPRCasFinder 1922704-1922736 33 NZ_CP047321.1 2030174-2030206 2 0.939
NZ_CP047321_7 7.1|2089277|26|NZ_CP047321|CRISPRCasFinder 2089277-2089302 26 NZ_CP047321.1 2126229-2126254 2 0.923
NZ_CP047321_8 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder 2094676-2094704 29 NZ_CP047321.1 367656-367684 2 0.931
NZ_CP047321_8 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder 2094676-2094704 29 NZ_CP047321.1 1704716-1704744 2 0.931
NZ_CP047321_8 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder 2094676-2094704 29 NZ_CP047321.1 151669-151697 2 0.931
NZ_CP047321_8 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder 2094676-2094704 29 NZ_CP047321.1 562007-562035 2 0.931
NZ_CP047321_8 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder 2094676-2094704 29 NZ_CP047321.1 885100-885128 2 0.931
NZ_CP047321_8 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder 2094676-2094704 29 NZ_CP047321.1 1228832-1228860 2 0.931
NZ_CP047321_8 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder 2094676-2094704 29 NZ_CP047321.1 1903150-1903178 2 0.931
NZ_CP047321_8 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder 2094676-2094704 29 NZ_CP047321.1 2030441-2030469 2 0.931

1. spacer 1.1|151708|33|NZ_CP047321|CRISPRCasFinder matches to position: 1492790-1492822, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

2. spacer 1.1|151708|33|NZ_CP047321|CRISPRCasFinder matches to position: 2694532-2694564, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

3. spacer 1.1|151708|33|NZ_CP047321|CRISPRCasFinder matches to position: 1402511-1402543, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

4. spacer 1.1|151708|33|NZ_CP047321|CRISPRCasFinder matches to position: 1779234-1779266, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

5. spacer 3.1|1704627|26|NZ_CP047321|CRISPRCasFinder matches to position: 2694484-2694509, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

6. spacer 6.1|2030478|34|NZ_CP047321|CRISPRCasFinder matches to position: 1402510-1402543, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

7. spacer 6.1|2030478|34|NZ_CP047321|CRISPRCasFinder matches to position: 1492790-1492823, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

8. spacer 1.1|151708|33|NZ_CP047321|CRISPRCasFinder matches to position: 2089166-2089198, mismatch: 1, identity: 0.97

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacatagagaaattggattcccaat	Protospacer
************ ********************

9. spacer 3.1|1704627|26|NZ_CP047321|CRISPRCasFinder matches to position: 2126229-2126254, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgcctgcttctatgttggggccccg	Protospacer
***** ********************

10. spacer 7.1|2089277|26|NZ_CP047321|CRISPRCasFinder matches to position: 1922678-1922703, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcgg	CRISPR spacer
cggggccccaacacagaggctggcgg	Protospacer
*****************.********

11. spacer 7.1|2089277|26|NZ_CP047321|CRISPRCasFinder matches to position: 2126285-2126310, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
******************** *****

12. spacer 7.1|2089277|26|NZ_CP047321|CRISPRCasFinder matches to position: 2694484-2694509, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.************

13. spacer 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder matches to position: 1050029-1050057, mismatch: 1, identity: 0.966

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacagacaatgca	Protospacer
********************.********

14. spacer 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder matches to position: 2580155-2580183, mismatch: 1, identity: 0.966

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaagcaatgca	Protospacer
*********************.*******

15. spacer 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder matches to position: 2580210-2580238, mismatch: 1, identity: 0.966

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaagcaatgca	Protospacer
*********************.*******

16. spacer 3.1|1704627|26|NZ_CP047321|CRISPRCasFinder matches to position: 1922678-1922703, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcctctgtgttggggccccg	Protospacer
********.***.*************

17. spacer 3.1|1704627|26|NZ_CP047321|CRISPRCasFinder matches to position: 2126173-2126198, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgcctgcttttatgttggggccccg	Protospacer
***** ****.***************

18. spacer 3.1|1704627|26|NZ_CP047321|CRISPRCasFinder matches to position: 2126285-2126310, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** ******.*************

19. spacer 4.4|1708805|37|NZ_CP047321|CRT matches to position: 809442-809478, mismatch: 2, identity: 0.946

ctgttgaaattggtgatccaatttctctatgttgggg	CRISPR spacer
ctgtagaaattggtgttccaatttctctatgttgggg	Protospacer
**** ********** *********************

20. spacer 4.4|1708805|37|NZ_CP047321|CRT matches to position: 2663451-2663487, mismatch: 2, identity: 0.946

ctgttgaaattggtgatccaatttctctatgttgggg	CRISPR spacer
ctgttgaaattggtgttccaatttctcaatgttgggg	Protospacer
*************** *********** *********

21. spacer 4.4|1708805|37|NZ_CP047321|CRT matches to position: 2663507-2663543, mismatch: 2, identity: 0.946

ctgttgaaattggtgatccaatttctctatgttgggg	CRISPR spacer
ctgttgaaattggtgttccaatttctctatgttgagg	Protospacer
*************** ******************.**

22. spacer 4.4|1708805|37|NZ_CP047321|CRT matches to position: 2663563-2663599, mismatch: 2, identity: 0.946

ctgttgaaattggtgatccaatttctctatgttgggg	CRISPR spacer
ctgttgaaattggtgttccaatttctctgtgttgggg	Protospacer
*************** ************.********

23. spacer 5.1|1922704|33|NZ_CP047321|CRISPRCasFinder matches to position: 2030174-2030206, mismatch: 2, identity: 0.939

ccaacttgcacactattgtaagctgactttcca	CRISPR spacer
ccaacttgcacattattgtaagctgacttacca	Protospacer
************.**************** ***

24. spacer 7.1|2089277|26|NZ_CP047321|CRISPRCasFinder matches to position: 2126229-2126254, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcgg	CRISPR spacer
cggggccccaacatagaagcaggcgg	Protospacer
*************.****** *****

25. spacer 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder matches to position: 367656-367684, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

26. spacer 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder matches to position: 1704716-1704744, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcaaaaagaaattctacagacaatgca	Protospacer
****.***************.********

27. spacer 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder matches to position: 151669-151697, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

28. spacer 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder matches to position: 562007-562035, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcaaaaagaaattctacagacaatgca	Protospacer
****.***************.********

29. spacer 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder matches to position: 885100-885128, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaggaaattctacagacaatgca	Protospacer
********.***********.********

30. spacer 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder matches to position: 1228832-1228860, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

31. spacer 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder matches to position: 1903150-1903178, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

32. spacer 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder matches to position: 2030441-2030469, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP047321_7 7.1|2089277|26|NZ_CP047321|CRISPRCasFinder 2089277-2089302 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP047321_7 7.1|2089277|26|NZ_CP047321|CRISPRCasFinder 2089277-2089302 26 NZ_CP034332 Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence 3359-3384 5 0.808
NZ_CP047321_7 7.1|2089277|26|NZ_CP047321|CRISPRCasFinder 2089277-2089302 26 NZ_CP022605 Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence 715511-715536 5 0.808
NZ_CP047321_8 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder 2094676-2094704 29 MN693281 Marine virus AFVG_25M371, complete genome 6448-6476 7 0.759

1. spacer 7.1|2089277|26|NZ_CP047321|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.***************** 

2. spacer 7.1|2089277|26|NZ_CP047321|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
gtaggcccagacacagaagctggcgg	Protospacer
  .***** .****************

3. spacer 7.1|2089277|26|NZ_CP047321|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
tcagggccaaacacagaagctggcgg	Protospacer
. .** ** *****************

4. spacer 8.1|2094676|29|NZ_CP047321|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 7, identity: 0.759

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
cacttagaagaaatcctacaaacaatgca	Protospacer
. .. *.*******.**************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 788327 : 835291 53 Staphylococcus_phage(61.54%) transposase,protease,tRNA,coat,integrase,terminase attL 808234:808249|attR 835919:835934
DBSCAN-SWA_2 930689 : 979545 48 Staphylococcus_phage(37.5%) integrase,transposase,tRNA attL 961975:961992|attR 970183:970200
DBSCAN-SWA_3 991707 : 1029055 41 Staphylococcus_phage(87.88%) transposase,protease NA
DBSCAN-SWA_4 1032215 : 1044944 6 Staphylococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_5 1170744 : 1179787 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_6 1248924 : 1257236 7 Caulobacter_phage(16.67%) tRNA NA
DBSCAN-SWA_7 1530270 : 1536768 10 Staphylococcus_phage(66.67%) transposase NA
DBSCAN-SWA_8 1795474 : 1803947 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_9 1937954 : 2018868 112 Staphylococcus_phage(83.33%) integrase,transposase,protease,head,tail,capsid,portal,holin,terminase attL 1996743:1996759|attR 2025791:2025807
DBSCAN-SWA_10 2058316 : 2072170 20 Staphylococcus_phage(85.71%) coat,integrase,terminase attL 2065728:2065743|attR 2071796:2071811
DBSCAN-SWA_11 2123095 : 2137882 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_12 2149854 : 2157674 10 Pandoravirus(16.67%) NA NA
DBSCAN-SWA_13 2243316 : 2314415 103 Staphylococcus_phage(50.0%) integrase,transposase,head,tRNA,tail,plate,portal,holin,terminase attL 2238532:2238548|attR 2272022:2272038
DBSCAN-SWA_14 2516389 : 2556923 55 Staphylococcus_phage(80.0%) coat,transposase,integrase,terminase attL 2525722:2525736|attR 2557910:2557924
DBSCAN-SWA_15 2760355 : 2801562 33 Staphylococcus_phage(31.25%) transposase NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP047321.1|WP_001790641.1|2134141_2134243_-|hypothetical-protein 2134141_2134243_- 33 aa aa NA NA NA 2123095-2137882 yes