CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047359	Rickettsia japonica strain LA16/2015 chromosome, complete genome	2 crisprs	DEDDh	0	1	0	0

Cas Category Instructions

Results visualization

1. NZ_CP047359

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047359_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047359_1

307358-307458

Orphan

Consensus_repeat	Method
TAACTTTAATATATTATGTTTATAAGGTTTTTAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047359_1

>merge|NZ_CP047359|1|307358-307458|CRISPRCasFinder
TAACTTTAATATATTATGTTTATAAGGTTTTTAAAAGTGTTTCTAGCATATTAATATCTCAATACTAACTTTAATATATTATGTTTATAAGGTTTTTAAAA

>NZ_CP047359|1|1|307358-307458|CRISPRCasFinder
TAACTTTAATATATTATGTTTATAAGGTTTTTAAAA	GTGTTTCTAGCATATTAATATCTCAATAC
TAACTTTAATATATTATGTTTATAAGGTTTTTAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047359.1\|WP_024704380.1\|298804_300532_-\|potassium-transporter	unknown	unknown	gnl\|CDD\|235131
NZ_CP047359.1\|WP_159344230.1\|313939_320905_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|273608
NZ_CP047359.1\|WP_081497949.1\|298197_298440_+\|palindromic-element-RPE1-domain-containing-protein	unknown	unknown	gnl\|CDD\|273412
NZ_CP047359.1\|WP_024704385.1\|310538_312017_-\|UbiD-family-decarboxylase	unknown	unknown	gnl\|CDD\|223121
NZ_CP047359.1\|WP_004997291.1\|300528_300855_-\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NZ_CP047359.1\|WP_014121125.1\|312171_313746_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182731
NZ_CP047359.1\|WP_012151363.1\|301009_301249_+\|BolA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223349
NZ_CP047359.1\|WP_024704382.1\|302908_303193_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047359.1\|WP_014014834.1\|298332_298812_-\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|226329
NZ_CP047359.1\|WP_024704381.1\|302021_302303_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047359.1\|WP_014121121.1\|306128_306776_+\|septum-formation-inhibitor-Maf	unknown	unknown	gnl\|CDD\|234957
NZ_CP047359.1\|WP_014121123.1\|308936_309539_-\|phospholipase-D-family-protein	unknown	unknown	gnl\|CDD\|197267
NZ_CP047359.1\|WP_014121127.1\|321234_323469_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP047359.1\|WP_014121122.1\|306909_307341_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|274124
NZ_CP047359.1\|WP_004997244.1\|308601_308889_+\|phasin-family-protein	unknown	unknown	gnl\|CDD\|378164
NZ_CP047359.1\|WP_014121128.1\|324412_325192_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP047359.1\|WP_014014852.1\|325438_325747_+\|RadC-family-protein	unknown	unknown	gnl\|CDD\|224914
NZ_CP047359.1\|WP_014014843.1\|307508_308426_-\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
NZ_CP047359.1\|WP_158309290.1\|325225_325339_-\|palindromic-element-RPE4-domain-containing-protein	unknown	unknown	gnl\|CDD\|274777
NZ_CP047359.1\|WP_010977828.1\|305901_306117_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954

Protein	Function_ID	Function_description	E-value
NZ_CP047359.1\|WP_024704380.1\|298804_300532_-\|potassium-transporter	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	9.64277e-116
NZ_CP047359.1\|WP_159344230.1\|313939_320905_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.8586e-48
NZ_CP047359.1\|WP_081497949.1\|298197_298440_+\|palindromic-element-RPE1-domain-containing-protein	gnl\|CDD\|273412	TIGR01045, Uncharacterized_protein_RP474, Rickettsial palindromic element RPE1 domain. This model describes protein translations of the first family described, RPE1, of Rickettsia palindromic elements (RPE). In Rickettsia conorii, 19 copies are found within protein coding regions, where they encode an insert relative to homologs from other species but do not disrupt the reading frame. Insertion is always in the same reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.	1.09493e-13
NZ_CP047359.1\|WP_024704385.1\|310538_312017_-\|UbiD-family-decarboxylase	gnl\|CDD\|223121	COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism].	0
NZ_CP047359.1\|WP_004997291.1\|300528_300855_-\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	2.47366e-44
NZ_CP047359.1\|WP_012151363.1\|301009_301249_+\|BolA-family-transcriptional-regulator	gnl\|CDD\|223349	COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal transduction mechanisms].	1.87249e-24
NZ_CP047359.1\|WP_014121125.1\|312171_313746_-\|hypothetical-protein	gnl\|CDD\|182731	PRK10788, PRK10788, periplasmic folding chaperone; Provisional.	2.8404e-18
NZ_CP047359.1\|WP_014014834.1\|298332_298812_-\|SH3-domain-containing-protein	gnl\|CDD\|226329	COG3807, COG3807, Uncharacterized protein conserved in bacteria [Function unknown].	9.43176e-83
NZ_CP047359.1\|WP_014121121.1\|306128_306776_+\|septum-formation-inhibitor-Maf	gnl\|CDD\|234957	PRK01526, PRK01526, Maf-like protein; Reviewed.	8.96535e-145
NZ_CP047359.1\|WP_014121127.1\|321234_323469_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	1.59172e-176
NZ_CP047359.1\|WP_014014852.1\|325438_325747_+\|RadC-family-protein	gnl\|CDD\|224914	COG2003, RadC, DNA repair proteins [DNA replication, recombination, and repair].	8.21463e-27
NZ_CP047359.1\|WP_014121122.1\|306909_307341_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	1.42119e-54
NZ_CP047359.1\|WP_014121123.1\|308936_309539_-\|phospholipase-D-family-protein	gnl\|CDD\|197267	cd09170, PLDc_Nuc, Catalytic domain of EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins. Catalytic domain of an EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins. Nuc is an endonuclease cleaving both single- and double-stranded DNA. It is the smallest known member of the phospholipase D (PLD, EC 3.1.4.4) superfamily that includes a diverse group of proteins with various catalytic functions. Most members of this superfamily have two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in a single polypeptide chain and both are required for catalytic activity. However, Nuc only has one copy of the HKD motif per subunit but form a functionally active homodimer (it is most likely also active in solution as a multimeric protein), which has a single active site at the dimer interface containing the HKD motifs from both subunits. Due to the lack of a distinct domain for DNA binding, Nuc cuts DNA non-specifically. It utilizes a two-step mechanism to cleave phosphodiester bonds: Upon substrate binding, the bond is first attacked by a histidine residue from one HKD motif to form a covalent phosphohistidine intermediate, which is then hydrolyzed by water with the aid of a second histidine residue from the other HKD motif in the opposite subunit.	1.26643e-65
NZ_CP047359.1\|WP_014121128.1\|324412_325192_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	3.60795e-160
NZ_CP047359.1\|WP_014014843.1\|307508_308426_-\|tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	7.0419e-130
NZ_CP047359.1\|WP_010977828.1\|305901_306117_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	1.11247e-43
NZ_CP047359.1\|WP_158309290.1\|325225_325339_-\|palindromic-element-RPE4-domain-containing-protein	gnl\|CDD\|274777	TIGR03777, RPE4, Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.	0.00627452
NZ_CP047359.1\|WP_004997244.1\|308601_308889_+\|phasin-family-protein	gnl\|CDD\|378164	pfam09361, Phasin_2, Phasin protein. This entry describes a group of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins.	3.19135e-05

>NZ_CP047359.1|WP_014121122.1|306909_307341_-|RNA-polymerase-binding-protein-DksA
MLETPKLPMGYKPSQDEEYMCPNHLEYFRQKLLRWKEDLLKESQETLNNLKEENLKESDLNDCATHETERAFELRSRNRYCKLMSKIEEALSRIKNGEYGYCEETGDPIGIKRLEARPIAALCIEAQERHENYERSHLDEPGN
>NZ_CP047359.1|WP_014121121.1|306128_306776_+|septum-formation-inhibitor-Maf
MKQNRKNLPIILASSSPARIELLNRIKIIPSQIIPADIDETPNLRELPAPLAMRLAYEKAIKIASQIEESAIIIAADTVAAVGRRILPKATTYEEVKNCIKMLSGRRHRVYTGLCIIKKENDQLTVRQKIVQTIVKFKKLSEEEVNFYCSLDEGIDKAGGCKISGYAEAFISFISGSYSNVMGLPLFETVNALTSLGFRCSSVMPAKMNYCHSAT
>NZ_CP047359.1|WP_010977828.1|305901_306117_+|translation-initiation-factor-IF-1
MSKDDLIQFTGTVLELLPNATFRVKLENDHVIIAHTSGRMRKNRIRILLGDKVMVEMTPYDLTKGRVIHRH
>NZ_CP047359.1|WP_024704382.1|302908_303193_-|hypothetical-protein
MFTQVTNLTGGINITCGKAVDLMFTGPSSVSGAIGSSTSKVGDITISGDVLNCTGGINAGYVILINGGDIKFKGTTNSLDISEGSSFSLFAFKS
>NZ_CP047359.1|WP_024704381.1|302021_302303_-|hypothetical-protein
MPRATTKFHYKTKIVSENFKGSSSNSSAEYTNAALVQAPINYGSHKFNDDVWLQKAVIGTNAITFAPKKTAFIASDLGANTISCRSSNNDVYL
>NZ_CP047359.1|WP_012151363.1|301009_301249_+|BolA-family-transcriptional-regulator
MAISVEELEKILKESFPNSTMKITDLVGDQDHYALEISDVQFNGLSLINQHKLVKNALSEILNKKLHAITIKTIAVPEK
>NZ_CP047359.1|WP_004997291.1|300528_300855_-|ribosome-silencing-factor
MKKETEELKLFILECLSEKKAEDIEVIDLTGKHKLADYIIFASGRSTKNVGAIAEYVALELKNNAGINSNIEGLGKSEWVLIDAGTILINIFYPEVREHFKLEEIWKR
>NZ_CP047359.1|WP_024704380.1|298804_300532_-|potassium-transporter
MNDHILINVIILLGTAVFIVAILKRLRLSPVLGYLIAGAAIGDHGLKIVTYDQTKLLGELGVVFLLFAIGLELSFERLKAMRRYVFGLGSLQVLTTAIVIAGAMVLIDGNSSAAIITGGGLALSSTALVMQVIEENRSQSTQIGRVSLAILLLQDLAVVPLLVIVPLLAGNNKASLAAALGIALLKAVTALLTIFIVGRVFLRPVFSFISSESNNASELPISMTLLIVLSAAWATETFGLSLALGAFVAGVLVAETEFRLQAEESIYPFKSLFLGLFFMTVGMNIDALEMYEKISHILTLSIALIGIKTLIITAFCILFGFNKGVAFYSGLLLSQGGEFGFILFSLGKDSGVLEESTADILLLVVTFTMALTPLLAALGQKIAEKVDKGLGKTPTQMIELGARDLTNHIIIAGLGNTGKMVARVLEAEGISYVILDLDDERVKEELSNGLPVFKGDVSQADTLKALGTERAFAIILTMNNQVTIKKSLKTISGNYQDIPVVVKLKNLKNAREFYDLGATTIIPESYETGLQIGGTVLKNIGISEQEINRIKVQFRLGNYIIEKKEDALSEAEDND
>NZ_CP047359.1|WP_014014834.1|298332_298812_-|SH3-domain-containing-protein
MIKILITLIIVILSTTINADNKKLPIPRFVSIKSNEVNARSGPTTKSTVEWVFVKKGEPVEITAEYKQWRQVRDINGEGGWIHSSVLSGKRSVVITSDKEIELTKSADPKSRVIAKLMPKVRCSLKKCKKQFCQITCKDYTGWISKKVIWGVYDDNDRY
>NZ_CP047359.1|WP_081497949.1|298197_298440_+|palindromic-element-RPE1-domain-containing-protein
MTYLNKEELEENTEHSTVAYIKVREDASTGLTYKLPLEGGYARSLLIPIIIIIHSPNYFLGNPTCVILTCNLAELFFTFF
>NZ_CP047359.1|WP_014014843.1|307508_308426_-|tyrosine-recombinase-XerC
MLDTSIQALINKWQKYLVLQRNYSNHTAISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSEDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGKGSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYGLPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYPIKK
>NZ_CP047359.1|WP_004997244.1|308601_308889_+|phasin-family-protein
MKSYMNPEFYMSSMKNIPSVDLASITNTMQRAMNILLITNQIATESMQSLLKKNSEIIQNNVNTILNTTKEAATSKDFKQASECHQKCLKSIYIF
>NZ_CP047359.1|WP_014121123.1|308936_309539_-|phospholipase-D-family-protein
MKRKNNKFIEISIAFILGMALGIYGQNPDYFTNLISQKSLALSTLQIKHYNISELSRSKVSTCFTPPAGCTKFIANQIDKAEESIYMQAYGMSDALITTALINAQARGVKVRILLDRSNLKQKFSKLHELQRAKIDVGIDKVPGIAHNKVIIIDKKKVITGSFNFTAAADKRNAENVIIIEDQELAESYLQNWLNRKASN
>NZ_CP047359.1|WP_024704385.1|310538_312017_-|UbiD-family-decarboxylase
MSFKDLPEFLKFLEKNGELKRIALEVKTNLEITEISRRVLAQGGSALLFENVIKVDGIKSDIPVLTNLYASINRICMGLKLKSPKELRELGVLLAFLKQPQPPASFKDTLSMLPLAKRIFAMSPKTVSKAACHEIVIDKPNINILPIQRCWPDDISPLITWGIVFTRGPTKDKIDNYNLGIYRMQVISENKLLMRWLKLRGGAEHHKRWKEAKKEPFPTAIVIGANPAVTLAAVMPIPENISEYNFAGLLGNKKVELVQCKTIDLKVPAHSEIVLEGYVSLEEYLPEGPFGDHTGYYNDVEEFPVFTVTAITMKKNPVYLSTYTGAPPDEPSILGEALNEIFIPILQQQFPEIVDFWLPPEGCSYRVAVVSIKKSYPGHAKRIMLGIWSYLRHFMYSKFVIVVDDDIDVRNWQEVIWAIATRSDPRRDTSFIDNSPIDYLDFASPESGLGSKMGIDATDKIYPETNRKWGKKIEMSQEVIDKVNSMWNSLKI
>NZ_CP047359.1|WP_014121125.1|312171_313746_-|hypothetical-protein
MLDNIRKTADSFIMRVLFAMIAFAFIGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAKSLEINSISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVKESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKVMTDNIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKANIKDLKVSVTQDELLEFYNENKDEFGDQSFEAVQQQLHDLLKAQKIDILNMEFAKKLEDETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAENADSIFELSEGELSYPIETEDKSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKRNIADVNLKIIKDLAKEYNSDQENIKELKATGIKISKKSYIRSEMENDLTLTPEILLSIFNTTIGSNTPVFQVGDEVYFAHIKSSSVDELTAKNIHVNSEKNIIYNIKNSVIDELINYTIIQNDMQVKANFSK
>NZ_CP047359.1|WP_159344230.1|313939_320905_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MANISPKLFQKAIQQGLKAALFTTSTAAIMLSSSGALGVAAGVIATNNDAAFSNDAAANNWNQITARGEADGNPAGGPQNNWAFTYGGDYTITADVVNCIIKAINVANTNPVGLNIAQNTVVGSIITGGNLLPVTITAGKSLTLNGNNAVAANHGFNAPADNYTGLGNITLGGVNAELIIQSATPANITLAGNIDGGGIITVKTDAAINGTIGNTNALATINVGAGKATLGGAVIKATTTKLTNAASVLTLTNANAVLTGEIDNTTGGDNVGVLNLNGALSQVSGNIGNTNTLATINVGAGKATLEGAVIKATTTKLTNAASVLTLTNANTVLTGEIDNTTGGDNVGVLNLNGALSQVSGNIGNTNTLATINVGAGKATLEGAVIKATTTKLTNAASVLTLTNANAVLTGEIDNTTGGDNVGVLNLNGALSQVSGNIGNTNALATVNVGAGLLQVQGGVVKANAINLTDNASAVTFTNPVVVTGALDNTGNANNGIATFTGNSTVTGNIGNTNALATVNVGAGLLQVQGGVVKANAINLTDNASAVTFTNPVVVTGALDNTGNANNGIATFTGNSTVTGNIGNTNALATVNVGAGLLQVQGGVVKANAINLTDNASAVTFTNPVVVTGALDNTGNANNGIATFTGNSTVTGNIGNTNALATVNVGAGLLQVQGGVVKANAINLTDNASAVTFTNPVVVTGALDNTGNANNGIATFTGNSTVTGNIGNTNALATVNVGAGLLQVQGGVVKANAINLTDNASAVTFTNPVVVTGALDNTGNANNGIATFTGNSTVTGNIGNTNALATINVGAGTATLEGAVIKATTTKLTNAASVLTLTNANAVLTGEIDNTTGGDNVGVLNLNGALSQVSGNIGNTNALATINVGAGTATLEGAVIKATTTKLTNAASVLTLTNANAVLTGEIDNTTGGDNVGVLNLNGALSQVSGNIGNTNALATINVGAGTATLEGAVIKATTTKLTNAASVLTLTNANAVLTGEIDNTTGGDNVGVLNLNGALSQVSGNIGNTNALATINVGAGTATLGGAVIKATTTKLTNAASAVTFTNPVVVTGALDNTGNANNGIATFTGNSTVTGNIGNTNALATVNVGAGLLQVQGGVVKANAINLTDNASAVTFTNPVVVTGALDNTGNANNGIATFTGNSTVTGNIGNTNALATVNVGAGLLQVQGGVVKANAINLTDNASAVTFTNPVVVTGALDNTGNANNGIATFTGNSTVTGNIGNTNALATVNVGAGVTLKAGGSLAANNIDFGARSILEFNGPLDGGGNIIPYYFKGAIANGNNAILNVNTKSLTAYHSTIGTVAEINIGAGNLFTIDASAGDVTILNAQDINFRVPDSALVLSNFTGVGAKNILLAADLVAPGADEGNVVFDGGVNGLNIGSNVAGTARNIGDGGGNKFNTLLIYNAVTITDDVNLEGIQNVRIENNADFTSSTAFNAGIIQINDATYTIDANNGNLNIPAGNIQFAHADAQLILQNSSGNDRTITLGANIDPDNDNEGVVILNSVTAGKKLTIAGGKTFGGAHKLQTIVFKGAGDCSAAGTTFNTTNIELDITGKLELGAAKANVVLFNDAVQLTQTGHIGGFLDFNAKNGTVILNNNVSVAGAVQNTGGTNNGTLIVLGASNLNRVNGIAMLKVGAGNVTIAKGGNVKIGEIQGTGTNTLTLPANFNLTGSINKTGGQALKLNFTNGGSVKGVVGTAANSVGDITTAGATSFASSVNAKGTATLGGTTSFANTFTNTGAVTLAKGSITSFAKNVTATSFVANSATINFGNSLAFNSNITGSGTTITLGANHVTYTGTGSFTDTLTLNTTFDGAAKSGGNILIKSGSTLDLSGVSTLALVVTATNFDMNNISPDTKYTVISAETAGDLKPTPKENVKITINNDNRFVDFTFDASTLTLFAEDIAADVIDEDFAPGGPLVSIPNAANIKKSLELMEDAPNGSDARQAFNNFGLMTPLQEADATTHLIQDVVKPSDTIAAVNNQVVASNISSNITALNARMDKVQVANKGPVSSGDEDMDAKFGAWISPFVGNAKQKMCNNISGYKSDTTGGTIGFDGFVSDDLALGLAYTRSDTDIKLKNNKTGDKNKVESNIYSLYGLYNVPYENLFVEAIASYSDNKIRSKSRRVIATALETVGYQTANGNYKSESYTGQLMAGYTYMMPENINLTPLAGLRYSTIKDKGYKETGTTYQNLTVKGKHYNTFDGLLGAKVSSNINVNEIVLTPELYAMVDYAFKNKVSAIDARLQGMTAPLPTNSFKQSKTSFDVGVGVTAKHKMMEYGINYDTNIGSKYFAQQGSVKVRVNF
>NZ_CP047359.1|WP_014121127.1|321234_323469_-|DNA-translocase-FtsK
MLYYINKILSNNKVQAVILGIIGLGIVTVLTSYNIDDPSFNSVTTDYHSNLVGIFGSYLSDCLYQFFGLAAFIIPLACFVWGRNCWYGRYRGSFVRMFVMLLALVSSSTLLSKIKLEFIPANAGGAIGIIASNFFERFTNQLYLLLIFFTFIILVVLFEIKFTSLSNFIIKLGKFLIYRIQSFLHNVFSRLSSIRLFPTKNNDKINITSSYQKPVSEKVKFPEEARSVSANPIKFFSKPVSPKISQSEIAELPPISLLRDPENHHVKGASSSELKQKAEELLTVLNDFGVKGQIININQGPVVTQYEFEPAAGTKTSRVVGLSDDIARSLSALSTRIAVIPGKNVLGIELPNKQREFFCLKELIETPEYQDKSTLLPLVLGKDLAGKPLIADLAKMPHLLVAGTTGSGKSVGINAMIVSLLYRYTPEECRFIMIDPKMLELSAYDGIPHLLTPVVTEPSKAVVALKWAVKEMENRYRMMSNIGVKNIAGYNAKILEAVKEKRVIERSIQTGFDPETGKPIYETVTMNMEKLPYIVVIVDEMADLMLVAGKDIEMLIQRLAQMARAAGIHIIMATQRPSVDVITGVIKANFPSRISFKVTSKIDSRTILGEQGSEQLLGMGDMLFMGSTSKISRVHGPFVNEAEIEQITEYLKESGTPEYISAVTEQPEEDDSSIDIGDGTSDEVLYKKAVQIVRYERKSSISYIQRSLRIGYNKAANLVEKMEKEGIVSPPNHTGKREILLPER
>NZ_CP047359.1|WP_014121128.1|324412_325192_+|type-I-methionyl-aminopeptidase
MTIKIHTGKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNGLCHNFITSHNAVPAPLNYKGFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRLIQVTYDAMMKGIEVVRPGAKLGDIGHAIQSYAEKHNYSVVRDYTGHGIGRVFHDEPSILNYGRSGTGLTLEEGMFFTVEPMINAGHYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKDGFEIFTLSPKKLDYPPY
>NZ_CP047359.1|WP_158309290.1|325225_325339_-|palindromic-element-RPE4-domain-containing-protein
MIAGSSLFKCFLDPVVKTRDDTECVFGSTQQCPAGMT
>NZ_CP047359.1|WP_014014852.1|325438_325747_+|RadC-family-protein
MLENNLLEFSNDEIDTHHYIGHRKRVKERFVAAGAEHFSDYELLEVMLFSAIPRKDIKPLAKKLLDHFDITDLINLDKERLLSIKGTNENLYINFALLELIN

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Crispr_ID: NZ_CP047359_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047359_2

902849-902950

Orphan

Consensus_repeat	Method
ATTGCAGCAAAAATTATATCAAGAATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047359_2

>merge|NZ_CP047359|2|902849-902950|CRISPRCasFinder
ATTGCAGCAAAAATTATATCAAGAATTGTTCAGTGATCTAAACATTCCTTTTGAAGAACTAATTGCAAAAAAGGAATTGCAGCAAAAATTATATCAAGAATT

>NZ_CP047359|2|2|902849-902950|CRISPRCasFinder
ATTGCAGCAAAAATTATATCAAGAATT	GTTCAGTGATCTAAACATTCCTTTTGAAGAACTAATTGCAAAAAAGGA
ATTGCAGCAAAAATTATATCAAGAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047359.1\|WP_014120715.1\|905475_906990_+\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
NZ_CP047359.1\|WP_014120716.1\|907685_908489_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
NZ_CP047359.1\|WP_024704512.1\|897248_897620_-\|NADH-quinone-oxidoreductase-subunit-A	unknown	unknown	gnl\|CDD\|180638
NZ_CP047359.1\|WP_024704514.1\|910069_910909_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226605
NZ_CP047359.1\|WP_014120712.1\|901311_902232_+\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NZ_CP047359.1\|WP_024704513.1\|903446_904610_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375184
NZ_CP047359.1\|WP_014120709.1\|896013_896742_-\|NADH-quinone-oxidoreductase-subunit-C	unknown	unknown	gnl\|CDD\|235691
NZ_CP047359.1\|WP_014120719.1\|910905_911628_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224026
NZ_CP047359.1\|WP_014120707.1\|894377_894650_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198395
NZ_CP047359.1\|WP_014120717.1\|909147_910065_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225531
NZ_CP047359.1\|WP_014120721.1\|912153_912594_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP047359.1\|WP_014014181.1\|894739_895915_-\|NADH-dehydrogenase-(quinone)-subunit-D	unknown	unknown	gnl\|CDD\|180385
NZ_CP047359.1\|WP_024704511.1\|893571_893820_-\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|172864
NZ_CP047359.1\|WP_014120711.1\|897777_899013_-\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|225844
NZ_CP047359.1\|WP_014014179.1\|893812_894316_-\|NADH-quinone-oxidoreductase-subunit-NuoE	unknown	unknown	gnl\|CDD\|181024
NZ_CP047359.1\|WP_004995979.1\|899013_899487_-\|DUF2155-domain-containing-protein	unknown	unknown	gnl\|CDD\|227106
NZ_CP047359.1\|WP_109559307.1\|907087_907234_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|365912
NZ_CP047359.1\|WP_024704515.1\|911707_912130_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047359.1\|WP_014120714.1\|904617_905400_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|168626
NZ_CP047359.1\|WP_004995988.1\|896719_897244_-\|NADH-quinone-oxidoreductase-subunit-B	unknown	unknown	gnl\|CDD\|235797

Protein	Function_ID	Function_description	E-value
NZ_CP047359.1\|WP_014120715.1\|905475_906990_+\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	2.54597e-172
NZ_CP047359.1\|WP_014120716.1\|907685_908489_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	4.8123e-91
NZ_CP047359.1\|WP_024704512.1\|897248_897620_-\|NADH-quinone-oxidoreductase-subunit-A	gnl\|CDD\|180638	PRK06602, PRK06602, NADH:ubiquinone oxidoreductase subunit A; Validated.	5.28337e-55
NZ_CP047359.1\|WP_024704514.1\|910069_910909_+\|ABC-transporter-permease	gnl\|CDD\|226605	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only].	1.60997e-103
NZ_CP047359.1\|WP_014120712.1\|901311_902232_+\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	6.67141e-152
NZ_CP047359.1\|WP_024704513.1\|903446_904610_+\|hypothetical-protein	gnl\|CDD\|375184	pfam17422, DUF5410, Family of unknown function (DUF5410). This is a family of unknown function found in Rickettsia.	4.47172e-172
NZ_CP047359.1\|WP_014120709.1\|896013_896742_-\|NADH-quinone-oxidoreductase-subunit-C	gnl\|CDD\|235691	PRK06074, PRK06074, NADH dehydrogenase subunit C; Provisional.	2.03153e-89
NZ_CP047359.1\|WP_014120719.1\|910905_911628_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224026	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only].	8.62833e-118
NZ_CP047359.1\|WP_014120707.1\|894377_894650_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198395	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria. The family includes a group of uncharacterized bacterial proteins with a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI and catalytic GIY-YIG domain of nucleotide excision repair endonuclease UvrC.	4.50965e-41
NZ_CP047359.1\|WP_014120717.1\|909147_910065_+\|hypothetical-protein	gnl\|CDD\|225531	COG2984, COG2984, ABC-type uncharacterized transport system, periplasmic component [General function prediction only].	4.93049e-101
NZ_CP047359.1\|WP_014120721.1\|912153_912594_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	3.95998e-08
NZ_CP047359.1\|WP_014014181.1\|894739_895915_-\|NADH-dehydrogenase-(quinone)-subunit-D	gnl\|CDD\|180385	PRK06075, PRK06075, NADH-quinone oxidoreductase subunit D.	0
NZ_CP047359.1\|WP_024704511.1\|893571_893820_-\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|172864	PRK14388, PRK14388, membrane protein insertion efficiency factor YidD.	5.06168e-55
NZ_CP047359.1\|WP_014120711.1\|897777_899013_-\|O-antigen-ligase-family-protein	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	6.58093e-45
NZ_CP047359.1\|WP_014014179.1\|893812_894316_-\|NADH-quinone-oxidoreductase-subunit-NuoE	gnl\|CDD\|181024	PRK07539, PRK07539, NADH-quinone oxidoreductase subunit NuoE.	3.59859e-91
NZ_CP047359.1\|WP_004995979.1\|899013_899487_-\|DUF2155-domain-containing-protein	gnl\|CDD\|227106	COG4765, COG4765, Uncharacterized protein conserved in bacteria [Function unknown].	4.62197e-76
NZ_CP047359.1\|WP_109559307.1\|907087_907234_+\|hypothetical-protein	gnl\|CDD\|365912	pfam00157, Pou, Pou domain - N-terminal to homeobox domain.	0.00983943
NZ_CP047359.1\|WP_014120714.1\|904617_905400_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|168626	PRK06603, PRK06603, enoyl-[acyl-carrier-protein] reductase FabI.	0
NZ_CP047359.1\|WP_004995988.1\|896719_897244_-\|NADH-quinone-oxidoreductase-subunit-B	gnl\|CDD\|235797	PRK06411, PRK06411, NADH-quinone oxidoreductase subunit NuoB.	2.04327e-112

>NZ_CP047359.1|WP_014120712.1|901311_902232_+|site-specific-tyrosine-recombinase-XerD
MAFIAQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKQKLSELNITTENIRDWIEYLASNDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHCSHNNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKERVIVINEQAVISIAKYLAIRDVFVNKAKPSNLIYLFPSSALAGYMTRQNFAILLKSAALYAGLNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALLHHPLNKN
>NZ_CP047359.1|WP_004995979.1|899013_899487_-|DUF2155-domain-containing-protein
MKLLKIIFIITICINFPIFAENLESVTTTEDIENDVFIPLDENHPILNPNDNINDSSEFKNYTNGKIIALNNITATSEEIDFKVGEEKYFGNIKIKLHKCIKNLDPYNEDNYLLMTITEYKIDEDPNLLFQGWMISSSISLSTFEHPIYEIFAKDCF
>NZ_CP047359.1|WP_014120711.1|897777_899013_-|O-antigen-ligase-family-protein
MQYLISSLIFLIPSLGMLAGLSTAATVTIFLLISFLRSINSHCERLKGAWQSSNNVIPWLDHGIQKIKKDWIPLQAHGMTMLFTAWCFISCLFAIHLINSLATFTQVFILLFLGFAVSNSSPFQNRLQLKKALIFGILTAILLFFIEYSSHGFLTRIFKTSFGLYMLDRGCALLSITAWVAIIILLSNDKKRHALMLYILVLYLLSISDSLASFLGFGIGGVIFILTRFMKPIFFKLIAISLITGSLLFPVIAKQIEPQDLSEQYLATQPSAAHRLFIWHFVANKIIEKPILGYGLASSKYIEADDSEMIDYNGEKWHPLPLHPHNNILQITLELGIIGLILFLCLVYKYLKQISNLKNKNFKAISYACFINYYIIGMISYNIWQIWWISSGIWVLVLMKLLVKPDIVIDN
>NZ_CP047359.1|WP_024704512.1|897248_897620_-|NADH-quinone-oxidoreductase-subunit-A
MLQNSELLQEYLPIAIFFCIAVLVSGLIMILPNLLSTKKYNKDKLEPYECGFEPFSDARAKFDIRFYLVAILFIIFDLEIAFLVPWAISLNTIGKIGFFSMMFFLFVLIIGFIYEWKKGALDW
>NZ_CP047359.1|WP_004995988.1|896719_897244_-|NADH-quinone-oxidoreductase-subunit-B
MKNNFYQEDELLSNELSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKYDARQTH
>NZ_CP047359.1|WP_014120709.1|896013_896742_-|NADH-quinone-oxidoreductase-subunit-C
MTLDKLIERLAAKSSILITPITVKDYLAYKIEPNFLLPFLKVLKESEELRFTLLTDLFGADFPQNNVVNSVGLGHKEQDAKPITNRKATSDNVGKSKSIDYKRFEVVYNLLSLKLNKRLIIKVYISEKETIPSAMNIFSAACWYEREVYDMYGVNFEGNDDKRRILTDYEFEGHPLRKDFPLTGYTQVKYDEKLKKVAYEPVDLDIEYRDFDFSSHWHSPSYVLPGDEKATDVIPAKSGIQK
>NZ_CP047359.1|WP_014014181.1|894739_895915_-|NADH-dehydrogenase-(quinone)-subunit-D
MTNNTKTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAKFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIEKMPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR
>NZ_CP047359.1|WP_014120707.1|894377_894650_-|GIY-YIG-nuclease-family-protein
MYWVYILCSNKHGTLYIGITNNIIRRAYEHKQTIIKGFTAKYNIIKLVYKEEFTDIQEALTRETNLKKWQSSVKIELIEKTNPEWKDLIK
>NZ_CP047359.1|WP_014014179.1|893812_894316_-|NADH-quinone-oxidoreductase-subunit-NuoE
MNTKITNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPYIRAYEVATFYTMFNLKRVGKYHIQVCTTTPCWLRGSDDIMKICEKKLGVKLKETTEDQKFTLSEIECLGACVNAPVVQINDDYYEDLTQKKMGKIIDKLQND
>NZ_CP047359.1|WP_024704511.1|893571_893820_-|membrane-protein-insertion-efficiency-factor-YidD
MTRILLLLLRFYQYFISPLLGNNCRFHPTCSEYAKEAISMHGSIKGLWLTFKRIIKCQPFCDGGYDTVPISIKNSKTLNKKI
>NZ_CP047359.1|WP_024704513.1|903446_904610_+|hypothetical-protein
MATKNKKETVNTETKNLANLVIQEIGNKNFDFVVLQKMQQAFSTASKQKQREAFISLLDKKLNKEQLHKLNQAIMENANELMPDNDPNFVCRTPNNKVFQEILLLEAKRSGMKAKFNDKGELQSLDVKDITQEILDHYRILQEKFYPKRDSIDLIDSRIAQSINFLLYAPLFRESDIYTTLGLKSAEIEREIQDPNGKYAKQLVDAKIGTNINFNTKENLENKAHEGKETKISSIIEKAITKLKKDKKVNIEDKRQGAIKRHLSKSLEGASDYILTFKKNALVDVIYQGLDKRQAWWSKIVNYIGIKSYSISKKNLEKIGTIINSEMKNSHTPLKIEVQEQLKQISKELNRLNNLVLPLEAKKVQAKSKKPPVPPKPEHLKKRNHGL
>NZ_CP047359.1|WP_014120714.1|904617_905400_-|enoyl-ACP-reductase-FabI
MTTGLLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSGVLEKRVKPLAEEIGCNFVSELDVTKPKSISNLFDDIKEKWGNFDFLLHGMAFADKNELKGRYVYTSLENFHNSLHISCYSLLELARSAEALMHNGGSIVTLTYYGAEKVIPNYNVMGVAKAALEASIKYLANDMGENHIRVNAISAGPIKTLASSAIGDFSTMLKSHAATAPLKRNTTQEDVGGAAVYLFSELSKGVTGEIHYVDCGYNIMGSNKL
>NZ_CP047359.1|WP_014120715.1|905475_906990_+|apolipoprotein-N-acyltransferase
MYKPKIICLLLGILSGLVFAPTFFIPALLTLSYLCYIVQKSENWYEATKFGYLFGFGHFLSGIYWISIGVSVYIADFWWAIPFALFGLPIVLACFISASCTLSFFAKNNKYYQFIFCLCWVLFEWVRSWIFTGFPWNLIGYAFSFSDILIQPLSIIGIYGLSFIVIYISTSAYPLFSKQFTQLKILLASSVLVLTIIVIYGAVRLSNNHTNFTDIKVRLVQPSIPQTEKWNEEEFWHNLMLHINLSENLEPTDLIIWSEAALVVPDDIPQVKSKLLKMLNSTNAILITGGISDNKKQGDEFELYSAMYALDKNNHKLFEYHKSHLVPFGEYMPLKKILPFKKLTHGLMDYKEGNGGLVYLEKYNLKIKPLICYESIFSDFVRTNNEIADVIINITNDAWYGKSSGPYQHFHISRSRAVENGLPMIRVANNGISAIVDPFGRTIKKLNLNEINYTQDLIPKKLISPTIFSQFGNFTILLLIVFILLINYLLALILDNQRVLALLY
>NZ_CP047359.1|WP_109559307.1|907087_907234_+|hypothetical-protein
MNDSIKHPDKLASERLKERRLAVGITQKELGQAFSVLVLSKLKNMKKV
>NZ_CP047359.1|WP_014120716.1|907685_908489_+|N-acetylmuramoyl-L-alanine-amidase
MSKSKAIENNGISNTNSPNGKYMAPRPEGVKPTCVVITYSVSKDIKAVLEVLDERGASVHYIIDKDGTQKEYHNDLTDQAFYAGKSSWKGEVGVNKFGIGVMLINDAKSDFPEEQIGKLKEFLKDVAERYPNLDLKHDLVGLGEVTVNREGNAHIAPGSKFPWKELAEAGFGRYFETTQEQKSELLLSLDSTGEKVNTLQENLKEYGYGVESTSTFDQFTQQAVRVFNDRYGTGLPNEEPPISWTEAGQDVLSQLLGQTVLEQTENA
>NZ_CP047359.1|WP_014120717.1|909147_910065_+|hypothetical-protein
MFISNIFQKFFSFLFVLFITAAVYADQKKVAVIVPLEHAAMTEIISGIKESLKDIDAEIIVKNAHADSNILLAIIKQIKDQDIDIIIPIGTTASQTVISHITNKPIVCAAAMINSKNLPLVTGVNDEIQITDTISKLPFLQNITLIYSSSEKVIPEVEMLKLYAGKNNISLHTVMIQNFNDMPMAVKNAPENTQSFIILKDHLIVSGINILKQEAFKRRIPIIASDEGSVISGATIAVGVQEKQIGVEAGLMAKKILQGIEPKDIPFGDMKDLTLFINLKSFVKQDILTKENLSVLPFARKELEE
>NZ_CP047359.1|WP_024704514.1|910069_910909_+|ABC-transporter-permease
MNILVTALEQSLIMLPLILGIYISYRILKITDLTVDGTYVLGAAVFARSLSFGLFPALIFAVIAGGIIGSIVSVMQKNNRINGLIAGILASFMLYSVNLQIMQRPNISVLGMPTLLSVLDLENWLIPLVIINCLIICSVIILLKGKLGLFLRAFGFNKDLLINLGKPAELYRTIGFSISNCLAALTGTLSAQVNGFADINMGFGVALVGIGAIVIGRHILIHANNFNVFKEIFSCLIGILFYFIALGFLLRIGIDPINLKLILGIVLFISLSSVKREAL
>NZ_CP047359.1|WP_014120719.1|910905_911628_+|ATP-binding-cassette-domain-containing-protein
MKPYLYAENIQFKVKERIEPIIAETTLNIAKEEFVVILGHNGSGKSTLAKILAGYLKPTSGKVCLDQVRIDKIPKGQKASTLVTLTQKAEERLFTELTLEENIILWESRFSSNERLASSELLELTGAPKRFLPLLSQPLGKFSGGEKQIILLALIIAHPPKILFLDEHTANLDPKASLEVMKKTAEIIEKHKITSVMITHNLEDAVNYGKRLIVLDSGKVVLDYLKPPGFSLKELKEILN
>NZ_CP047359.1|WP_024704515.1|911707_912130_-|hypothetical-protein
MGAKSANNYKDMDVNDYNYDLPDEEGVAKNTHEKLLKDVMQRLKNGEDKDGIINTLIEISINEDTRAELIEKVLNYNVNDNNPVAAPTLVTPVATPIVVPAPSTSTEEKLSAEVKTRLTIEKIRMILLISYFFIRLLTRM
>NZ_CP047359.1|WP_014120721.1|912153_912594_-|ankyrin-repeat-domain-containing-protein
MDVNTKDGKGRIPIHYATYSKQHEITQILLQPGSEIDTVDNYGGTPFFYLLLKHESGQNKTLLDFFLNNKVNLNINACGESIFNHALTSRDKWLLEKLISKGADIGQGVLLHNPFDHSIAELVKIGVDKEKIIYALKNIILILMSN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047359_1	1.1\|307394\|29\|NZ_CP047359\|CRISPRCasFinder	307394-307422	29	NC_042028	Acinetobacter phage AB1, complete genome	29746-29774	6	0.793

1. spacer 1.1|307394|29|NZ_CP047359|CRISPRCasFinder matches to NC_042028 (Acinetobacter phage AB1, complete genome) position: , mismatch: 6, identity: 0.793

gtgtttctagcatattaatatctcaatac	CRISPR spacer
gtgtttcaagcatcttaatatctccaaga	Protospacer
******* ***** ********** * .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage