CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047392	Serratia marcescens strain 1602 plasmid pKPC-2-HENAN1602, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP047391	Serratia marcescens strain 1602 chromosome, complete genome	0 crisprs	RT,DEDDh,DinG,csa3,cas3,WYL,casR	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2131844 : 2163071

Moraxella_phage(33.33%)

protease,coat

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033638278.1\|2131844_2132780_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_159360905.1\|2132800_2135143_-	fimbria/pilus outer membrane usher protein	NA	NA	NA	NA
WP_033638279.1\|2135291_2136056_-	molecular chaperone	NA	NA	NA	NA
WP_033646335.1\|2136080_2136635_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_071998115.1\|2136634_2137138_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_033638282.1\|2137140_2137680_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_060387634.1\|2137954_2139391_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_033638759.1\|2139492_2142123_-	PqiB family protein	NA	NA	NA	NA
WP_039567108.1\|2142091_2143339_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_033638286.1\|2143594_2144092_+	GAF domain-containing protein	NA	NA	NA	NA
WP_033638287.1\|2144188_2144899_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_033646333.1\|2144918_2146967_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	5.7e-85	33.7
WP_033638291.1\|2147276_2148155_+\|protease	protease HtpX	NA	NA	NA	NA
WP_049196132.1\|2148392_2149100_+	hypothetical protein	NA	NA	NA	NA
WP_033646331.1\|2149200_2150595_-	MFS transporter	NA	NA	NA	NA
WP_048321503.1\|2150826_2151618_+	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_048321504.1\|2151664_2152468_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_033646329.1\|2152470_2153334_-	2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA
WP_101426834.1\|2153335_2154472_-	2-aminoethylphosphonate ABC transport system ATP-binding subunit PhnT	G3M9Y6	Bacillus_virus	1.3e-25	33.7
WP_033646327.1\|2154468_2155479_-	2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_033638301.1\|2155654_2156374_-	phosphonate utilization transcriptional regulator PhnR	NA	NA	NA	NA
WP_033646326.1\|2156529_2157633_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA
WP_033646325.1\|2157642_2158452_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA
WP_086579715.1\|2158516_2159914_-	L-cystine transporter	NA	NA	NA	NA
WP_033638305.1\|2160089_2160638_-	metal-dependent hydrolase	A0A127AVX7	Bacillus_phage	6.4e-07	35.8
WP_033638306.1\|2161061_2161727_-	hexitol phosphatase HxpB	NA	NA	NA	NA
WP_033646324.1\|2161790_2163071_-\|protease	protease	NA	NA	NA	NA

DBSCAN-SWA_2

2180072 : 2186210

Escherichia_phage(42.86%)

integrase

attL 2173030:2173043|attR 2181818:2181831

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2173030:2173043	attL	NA	NA	NA	NA
WP_072274560.1\|2180072_2181275_+\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	7.1e-136	60.1
WP_071532844.1\|2181238_2181487_-	hypothetical protein	A0A1P8DTG1	Proteus_phage	1.6e-13	53.0
WP_159360846.1\|2181669_2182317_-	DNA methyltransferase	G8C7S6	Escherichia_phage	1.0e-88	74.9
2181818:2181831	attR	NA	NA	NA	NA
WP_159360847.1\|2182313_2182508_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_159360848.1\|2182733_2182952_-	hypothetical protein	NA	NA	NA	NA
WP_159360849.1\|2182994_2183138_+	hypothetical protein	NA	NA	NA	NA
WP_159360850.1\|2183134_2183632_-	hypothetical protein	A0A192Y6E0	Salmonella_phage	9.5e-10	50.0
WP_159360851.1\|2183692_2183881_-	hypothetical protein	NA	NA	NA	NA
WP_159360852.1\|2184223_2184430_-	restriction alleviation protein, Lar family	NA	NA	NA	NA
WP_159360853.1\|2184416_2184914_-	hypothetical protein	A0A077SLQ8	Escherichia_phage	1.9e-50	55.3
WP_159360854.1\|2184910_2185387_-	hypothetical protein	A0A220NRQ7	Escherichia_phage	2.3e-13	54.9
WP_159360855.1\|2185370_2186210_-	chromosome partitioning protein ParB	K7PKM7	Enterobacterial_phage	1.8e-77	59.3

DBSCAN-SWA_3

2189661 : 2231092

Cronobacter_phage(36.84%)

coat,terminase,tRNA,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159360860.1\|2189661_2190363_-	phage repressor protein C	G9L676	Escherichia_phage	3.6e-95	75.1
WP_159360861.1\|2190442_2190670_+	DNA-binding protein	G9L677	Escherichia_phage	7.6e-23	71.6
WP_159360862.1\|2190696_2190990_+	hypothetical protein	I6PCV6	Cronobacter_phage	1.2e-09	43.8
WP_060425671.1\|2191123_2191306_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_159360863.1\|2191302_2192325_+	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	1.1e-44	79.3
WP_159360864.1\|2192321_2193296_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	7.2e-62	37.6
WP_159360865.1\|2193292_2193649_+	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	6.3e-40	66.4
WP_159360866.1\|2193645_2194044_+	antitermination protein Q	S5M7R9	Escherichia_phage	4.9e-33	55.3
WP_060387656.1\|2194245_2194425_+	hypothetical protein	NA	NA	NA	NA
WP_072265526.1\|2194404_2194668_-	DUF1883 domain-containing protein	NA	NA	NA	NA
WP_043147346.1\|2194815_2195112_+	hypothetical protein	H6WRZ3	Salmonella_phage	5.4e-29	67.3
WP_159360867.1\|2195113_2195644_+	glycoside hydrolase family protein	H9C184	Pectobacterium_phage	5.4e-80	80.6
WP_159360868.1\|2195640_2196015_+	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_154618056.1\|2196322_2196544_+	hypothetical protein	NA	NA	NA	NA
WP_060387659.1\|2196618_2196816_+	hypothetical protein	NA	NA	NA	NA
WP_060387832.1\|2197068_2197323_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.3e-23	64.3
WP_060387660.1\|2197362_2198013_+	hypothetical protein	I6S676	Salmonella_phage	3.5e-89	74.3
WP_159360869.1\|2198044_2198488_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	3.5e-48	71.6
WP_159360870.1\|2198491_2199982_+\|terminase	terminase	A0A1W6JNY3	Morganella_phage	6.0e-241	80.9
WP_159360871.1\|2199992_2201420_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	5.4e-167	64.1
WP_080430359.1\|2201487_2202375_+\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	2.0e-106	65.3
WP_159360872.1\|2202405_2203791_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	6.5e-157	60.8
WP_159360873.1\|2203794_2204232_+	hypothetical protein	F1C5E0	Cronobacter_phage	1.3e-42	64.1
WP_043147354.1\|2204242_2205319_+\|coat	phage coat protein	F1C5E1	Cronobacter_phage	1.0e-154	75.4
WP_159360874.1\|2205328_2205730_+	hypothetical protein	NA	NA	NA	NA
WP_103687071.1\|2205729_2206110_+	hypothetical protein	F1C5E2	Cronobacter_phage	7.2e-50	77.8
WP_043147357.1\|2206204_2206552_+	hypothetical protein	G0ZNE2	Cronobacter_phage	3.4e-30	60.3
WP_159360875.1\|2206553_2206922_+	HK97 gp10 family phage protein	F1C5E3	Cronobacter_phage	1.4e-45	73.8
WP_043147359.1\|2206918_2207302_+	hypothetical protein	G0ZNE4	Cronobacter_phage	5.4e-45	64.6
WP_159360876.1\|2207326_2208085_+	DNA breaking-rejoining protein	G0ZNE6	Cronobacter_phage	1.1e-81	74.2
WP_159360877.1\|2208136_2208811_+	hypothetical protein	G0ZNE7	Cronobacter_phage	2.6e-66	55.8
WP_060387676.1\|2209008_2209308_+	DUF1902 domain-containing protein	NA	NA	NA	NA
WP_060387677.1\|2209317_2209602_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_159360878.1\|2209677_2209881_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_159360879.1\|2209987_2210188_+	hypothetical protein	NA	NA	NA	NA
WP_060432063.1\|2210306_2210756_+	hypothetical protein	Q5G8W9	Enterobacteria_phage	6.3e-53	68.9
WP_159360880.1\|2210845_2214238_+	tape measure protein	Q5G8W8	Enterobacteria_phage	1.2e-207	52.5
WP_060428211.1\|2214295_2214763_+	hypothetical protein	A0A173GC35	Salmonella_phage	1.1e-52	64.7
WP_060428209.1\|2214763_2215234_+	DUF1833 domain-containing protein	R9TPR6	Aeromonas_phage	1.3e-45	56.9
WP_060428233.1\|2215253_2215658_+	hypothetical protein	F1C5F2	Cronobacter_phage	8.7e-46	64.7
WP_159360881.1\|2215605_2218098_+	MoaD/ThiS family protein	A0A1B1W274	Salmonella_phage	9.3e-255	55.1
WP_060452929.1\|2218098_2220405_+	hypothetical protein	A0A1B1W279	Salmonella_phage	1.4e-10	52.5
WP_060437140.1\|2220405_2221311_+	hypothetical protein	NA	NA	NA	NA
WP_033637997.1\|2221456_2221879_+	translesion error-prone DNA polymerase V autoproteolytic subunit	F1C5A6	Cronobacter_phage	3.0e-33	55.0
WP_159360882.1\|2221878_2223147_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	5.2e-177	71.5
WP_159360883.1\|2223143_2223851_-	hypothetical protein	A0A2H4J5W2	uncultured_Caudovirales_phage	8.9e-70	55.2
WP_025159696.1\|2224118_2226047_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.5e-132	37.7
WP_048233542.1\|2226050_2226602_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.6e-16	33.7
WP_004931418.1\|2226700_2226898_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_004931417.1\|2226941_2227298_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_151498502.1\|2227364_2227460_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_049212647.1\|2227706_2228690_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	2.2e-34	38.9
WP_049212648.1\|2228704_2231092_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.8e-05	25.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage