CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047394	Bacillus vietnamensis strain 151-6 chromosome, complete genome	0 crisprs	DinG,WYL,RT,csa3,cas3,DEDDh	0	0	3	0
NZ_CP047395	Bacillus vietnamensis strain 151-6 plasmid p6, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1993487 : 2000693

Tupanvirus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142245382.1\|1993487_1994297_+	sulfotransferase family 2 domain-containing protein	A0A288WG17	Bacillus_phage	1.5e-36	36.1
WP_034760031.1\|1994471_1995566_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A2P1ELS7	Moumouvirus	2.3e-96	47.8
WP_034760029.1\|1995555_1996548_+	SDR family NAD(P)-dependent oxidoreductase	A0A2K9L4W2	Tupanvirus	9.4e-17	26.8
WP_159361894.1\|1996544_1997366_+	sugar nucleotide-binding protein	A0A2L2DJC0	Acanthamoeba_polyphaga_mimivirus	2.2e-35	34.5
WP_034760025.1\|1997362_1998244_+	NAD-dependent epimerase/dehydratase family protein	A0A222YY99	Synechococcus_phage	5.6e-21	27.4
WP_159361895.1\|1998296_1999178_-	glycosyltransferase	NA	NA	NA	NA
WP_159361896.1\|1999276_2000050_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_034760020.1\|2000096_2000693_-	adenylyl-sulfate kinase	A0A2K9L0F0	Tupanvirus	2.1e-24	40.2

DBSCAN-SWA_2

2566539 : 2576250

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034758733.1\|2566539_2568402_+	DNA ligase D	A0A068CDF3	Rhizobium_phage	2.2e-11	25.7
WP_034758730.1\|2568432_2569428_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_034758728.1\|2569890_2571138_-	HDOD domain-containing protein	NA	NA	NA	NA
WP_159362127.1\|2571350_2572640_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	5.1e-39	27.7
WP_034758721.1\|2572806_2573277_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.9e-44	60.0
WP_079531916.1\|2573293_2574487_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.6e-117	52.5
WP_034758717.1\|2574503_2575160_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	4.6e-44	44.3
WP_082197426.1\|2575173_2576250_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	9.8e-60	38.7

DBSCAN-SWA_3

3334313 : 3376409

Salmonella_phage(25.0%)

transposase,bacteriocin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159362473.1\|3334313_3334553_-\|protease	ATP-dependent Lon protease	NA	NA	NA	NA
WP_159362474.1\|3335471_3336047_-	dihydrofolate reductase	NA	NA	NA	NA
WP_159362475.1\|3337189_3338086_-	class A beta-lactamase	A0A1B0VBP7	Salmonella_phage	3.1e-59	45.8
WP_159362476.1\|3338176_3339019_+	sialate O-acetylesterase	NA	NA	NA	NA
WP_159362477.1\|3339015_3339555_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_159362478.1\|3340097_3341258_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.8e-83	42.3
WP_159362479.1\|3341629_3343198_-	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA
WP_159362480.1\|3345160_3347065_-\|bacteriocin	putative thiazole-containing bacteriocin maturation protein	NA	NA	NA	NA
WP_159362481.1\|3347201_3347471_-\|bacteriocin	heterocycloanthracin/sonorensin family bacteriocin	NA	NA	NA	NA
WP_159362482.1\|3347675_3348617_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA
WP_061809474.1\|3348712_3349018_+	hypothetical protein	NA	NA	NA	NA
WP_159362483.1\|3349065_3350385_-	CBS domain-containing protein	NA	NA	NA	NA
WP_079533635.1\|3350694_3350943_-	hypothetical protein	NA	NA	NA	NA
WP_079533637.1\|3351191_3351524_+	hypothetical protein	NA	NA	NA	NA
WP_159362484.1\|3351658_3351808_+	hypothetical protein	NA	NA	NA	NA
WP_071618904.1\|3352004_3353240_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_159362485.1\|3353566_3354142_+	suppressor of fused domain protein	NA	NA	NA	NA
WP_079533653.1\|3354307_3354988_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_159362486.1\|3355157_3355523_-	HxlR family transcriptional regulator	NA	NA	NA	NA
WP_159362487.1\|3355719_3356352_+	3-hexulose-6-phosphate synthase	NA	NA	NA	NA
WP_159362488.1\|3356359_3356917_+	6-phospho-3-hexuloisomerase	NA	NA	NA	NA
WP_159362489.1\|3357087_3358206_-	alanine dehydrogenase	NA	NA	NA	NA
WP_159362490.1\|3358448_3359777_+	cytosine permease	NA	NA	NA	NA
WP_159362491.1\|3360476_3362030_-	hypothetical protein	NA	NA	NA	NA
WP_159362492.1\|3362695_3363085_-	hypothetical protein	NA	NA	NA	NA
WP_159362493.1\|3363408_3364215_-	hypothetical protein	NA	NA	NA	NA
WP_159362494.1\|3364862_3365513_-	hypothetical protein	NA	NA	NA	NA
WP_159362495.1\|3365502_3366351_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_159362496.1\|3366350_3366698_-	helix-turn-helix domain-containing protein	A0A059T669	Listeria_phage	9.9e-06	30.2
WP_159362497.1\|3367270_3367693_-	hypothetical protein	NA	NA	NA	NA
WP_159362498.1\|3368007_3368946_-	ribose ABC transporter substrate-binding protein RbsB	NA	NA	NA	NA
WP_159362499.1\|3368956_3369910_-	ribose ABC transporter permease	NA	NA	NA	NA
WP_159362500.1\|3369902_3371393_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-13	24.4
WP_159362501.1\|3371411_3371798_-	D-ribose pyranase	NA	NA	NA	NA
WP_159362502.1\|3371794_3372685_-	ribokinase	NA	NA	NA	NA
WP_159362503.1\|3373905_3374145_+	hypothetical protein	NA	NA	NA	NA
WP_159362504.1\|3374225_3374501_-	hypothetical protein	NA	NA	NA	NA
WP_071618904.1\|3375173_3376409_-\|transposase	IS110 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP047395

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8015 : 36834

Bacillus_phage(54.17%)

integrase,protease,holin,portal,capsid,terminase,tail,head

attL 14203:14217|attR 37468:37482

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159363368.1\|8015_8786_+	AAA family ATPase	A0A0K2FLP4	Brevibacillus_phage	2.8e-16	26.3
WP_159363369.1\|8785_9190_+	hypothetical protein	NA	NA	NA	NA
WP_159363370.1\|9248_9458_+	hypothetical protein	NA	NA	NA	NA
WP_159363371.1\|9807_10275_+	hypothetical protein	NA	NA	NA	NA
WP_159363372.1\|10240_10852_+	hypothetical protein	NA	NA	NA	NA
WP_159363373.1\|10863_11142_-	hypothetical protein	NA	NA	NA	NA
WP_159363374.1\|11144_11360_-	hypothetical protein	A0A1L2JZ89	Aeribacillus_phage	5.9e-09	45.1
WP_159363375.1\|11749_12052_+	hypothetical protein	A0A2H4J241	uncultured_Caudovirales_phage	1.0e-11	40.9
WP_159363376.1\|12150_13155_-	hypothetical protein	A0A0U4J8N7	Bacillus_phage	1.2e-54	48.9
WP_159363377.1\|13199_13472_-\|holin	phage holin	A0A1S5S8Y0	Streptococcus_phage	2.7e-19	52.7
WP_159363378.1\|13486_13921_-	hypothetical protein	NA	NA	NA	NA
WP_159363379.1\|13988_14180_-	hypothetical protein	NA	NA	NA	NA
WP_159363380.1\|14183_18233_-	hypothetical protein	A0A142F1N2	Bacillus_phage	9.0e-74	40.9
14203:14217	attL	NA	NA	NA	NA
WP_159363381.1\|18229_19693_-	hypothetical protein	A0A2H4JH21	uncultured_Caudovirales_phage	5.8e-55	29.6
WP_159363382.1\|19697_22511_-	replication protein	A6XMK6	Bacillus_virus	5.8e-104	42.1
WP_159363383.1\|22663_23152_-	hypothetical protein	A0A1B1P772	Bacillus_phage	2.9e-27	41.0
WP_159363384.1\|23204_23792_-\|tail	phage tail protein	A0A1B1P778	Bacillus_phage	2.6e-54	50.3
WP_159363385.1\|23788_24208_-	hypothetical protein	A0A1B1P769	Bacillus_phage	1.5e-32	53.2
WP_159363386.1\|24185_24596_-	hypothetical protein	A0A1B1P759	Bacillus_phage	1.6e-18	41.5
WP_159363387.1\|24588_24939_-\|head,tail	head-tail adaptor protein	A0A1B1P760	Bacillus_phage	2.9e-29	55.5
WP_159363388.1\|24922_25237_-	hypothetical protein	A0A1B1P751	Bacillus_phage	2.8e-15	48.4
WP_159363389.1\|25246_25621_-	hypothetical protein	NA	NA	NA	NA
WP_159363390.1\|25650_26859_-\|capsid	phage major capsid protein	R4IBU5	Listeria_phage	6.2e-79	42.3
WP_159363391.1\|26898_27615_-\|protease	Clp protease ClpP	A0A2H4JC91	uncultured_Caudovirales_phage	7.7e-45	44.3
WP_159363392.1\|27589_28768_-\|portal	phage portal protein	A0A1B1P754	Bacillus_phage	2.8e-132	59.2
WP_159363421.1\|28781_30455_-\|terminase	terminase large subunit	A0A1B1P766	Bacillus_phage	3.4e-144	48.6
WP_159363393.1\|30438_30750_-	hypothetical protein	E2ELI1	Clostridium_phage	2.1e-15	43.8
WP_159363394.1\|30886_31279_-	hypothetical protein	NA	NA	NA	NA
WP_159363395.1\|31281_31608_-	HNH endonuclease	A0A1B1P757	Bacillus_phage	5.4e-22	52.6
WP_159363396.1\|31598_31847_-	hypothetical protein	NA	NA	NA	NA
WP_159363397.1\|32094_32637_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1P7Y2	Bacillus_phage	5.2e-62	66.9
WP_159363398.1\|32976_33537_-	DUF134 domain-containing protein	A0A0S2MVE1	Bacillus_phage	1.1e-06	31.4
WP_159363399.1\|33553_33763_-	hypothetical protein	NA	NA	NA	NA
WP_159363400.1\|34136_34448_-	hypothetical protein	NA	NA	NA	NA
WP_159363401.1\|34525_34759_-	hypothetical protein	NA	NA	NA	NA
WP_159363402.1\|34755_34929_-	hypothetical protein	NA	NA	NA	NA
WP_159363403.1\|34965_35205_-	hypothetical protein	NA	NA	NA	NA
WP_159363404.1\|35249_35441_-	hypothetical protein	NA	NA	NA	NA
WP_159363405.1\|35465_35687_-	hypothetical protein	NA	NA	NA	NA
WP_159363406.1\|35718_36294_-	recombinase family protein	M9Q1K0	Clostridium_phage	1.1e-22	35.1
WP_159363407.1\|36405_36834_-	hypothetical protein	R9TLR2	Paenibacillus_phage	1.9e-19	42.6
37468:37482	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047394

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP047395

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection