CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP046575	Rhodococcus sp. WAY2 plasmid pRWAY03, complete sequence	1 crisprs	csa3,PD-DExK,csf3gr5,csf2gr7,csf4gr11,DEDDh	1	0	2
NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	4 crisprs	cas6e,cas5,cas7,cse2gr11,RT,DEDDh,csa3,csf3gr5,csf2gr7,csf4gr11,PD-DExK	0	19	2
NZ_CP046576	Rhodococcus sp. WAY2 plasmid pRWAY04, complete sequence	0 crisprs	NA	0	0	0
NZ_CP046572	Rhodococcus sp. WAY2 chromosome, complete genome	2 crisprs	RT,csa3,cas3,WYL,c2c9_V-U4,DinG,DEDDh,cas4,Cas14u_CAS-V	0	0	3
NZ_CP046574	Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence	0 crisprs	csa3,DEDDh,RT,PD-DExK	0	0	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046575_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046575_1

293050-293117

Orphan

Consensus_repeat	Method
GCCGGAGCGGGAGCCGGAACAGCATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046575_1

>merge|NZ_CP046575|1|293050-293117|CRISPRCasFinder
ACAGGCGCGGGCGCCGGAGCGGGAGCCGGAACAGCATCCGGAGCCGGAGCGGGAGCCGGAACAGCATC

>NZ_CP046575|1|1|293050-293117|CRISPRCasFinder
ACAGGCGCGGGCGCCGGAGCGGGAGC	CGGAACAGCATCCGGA
GCCGGAGCGGGAGCCGGAACAGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046575.1\|WP_159929884.1\|289666_290305_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046575.1\|WP_081276437.1\|288705_289653_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046575.1\|WP_005560295.1\|295539_295797_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046575.1\|WP_159929878.1\|285414_286005_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046575.1\|WP_072948901.1\|294483_294936_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227296
NZ_CP046575.1\|WP_159929896.1\|301659_302442_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|375319
NZ_CP046575.1\|WP_159929882.1\|287106_287973_-\|CopG-family-transcriptional-regulator	unknown	unknown	unknown
NZ_CP046575.1\|WP_109336322.1\|300162_300870_-\|flagellar-biosynthesis-protein-FlgA	unknown	unknown	gnl\|CDD\|378023
NZ_CP046575.1\|WP_159929888.1\|294932_295349_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046575.1\|WP_005560298.1\|294025_294487_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|377921
NZ_CP046575.1\|WP_159929890.1\|295923_296823_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224975
NZ_CP046575.1\|WP_159929894.1\|299337_300156_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046575.1\|WP_159929880.1\|286171_286987_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP046575.1\|WP_005560293.1\|296819_297695_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046575.1\|WP_159929874.1\|283685_284549_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224900
NZ_CP046575.1\|WP_159929892.1\|297694_299341_-\|Flp-pilus-assembly-complex-ATPase-component	unknown	unknown	gnl\|CDD\|227297
NZ_CP046575.1\|WP_159929870.1\|282297_282633_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046575.1\|WP_159929876.1\|284787_285315_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046575.1\|WP_064079852.1\|290316_290877_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046575.1\|WP_159929872.1\|282742_283621_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP046575.1\|WP_159929892.1\|297694_299341_-\|Flp-pilus-assembly-complex-ATPase-component	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	4.07507e-36
NZ_CP046575.1\|WP_072948901.1\|294483_294936_-\|hypothetical-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	7.70758e-05
NZ_CP046575.1\|WP_159929880.1\|286171_286987_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	3.58193e-08
NZ_CP046575.1\|WP_159929874.1\|283685_284549_-\|hypothetical-protein	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	0.00183745
NZ_CP046575.1\|WP_005560298.1\|294025_294487_-\|pilus-assembly-protein	gnl\|CDD\|377921	pfam07811, TadE, TadE-like protein. The members of this family are similar to a region of the protein product of the bacterial tadE locus. In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria. All tad loci but TadA have putative transmembrane regions, and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.	0.000261156
NZ_CP046575.1\|WP_159929896.1\|301659_302442_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|375319	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain. This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.	1.75255e-14
NZ_CP046575.1\|WP_109336322.1\|300162_300870_-\|flagellar-biosynthesis-protein-FlgA	gnl\|CDD\|378023	pfam08666, SAF, SAF domain. This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.	4.1136e-05
NZ_CP046575.1\|WP_159929890.1\|295923_296823_-\|hypothetical-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	0.000796861

>NZ_CP046575.1|WP_064079852.1|290316_290877_-|hypothetical-protein
MTRRIAALATLTAAMCLTASCSILTPEPGTLETNAGPTFTGPPGSGKSPEQQAGEAALVKVNEYYTVLARLSADPAANPADLDNVAAGNFLQSTKRDITAHRIEADAGEVKVLKNTITRHNIPIDENGIPTPGTATIEMDVCLARATDVLELGKPILTNTAWPDPAGWRVTADYTLPGTPCNAGLF
>NZ_CP046575.1|WP_159929884.1|289666_290305_-|hypothetical-protein
MAHTTIRRTAVAALAATTLLVGVTACSDTDAADPAVELTVTGDPAFEGPDGADTSNKIPDELAREQALAKVDDFYAVVGKLDGDAAAPIEQLDTVAGGPVLDSWRGDITLRRSQNVVGAGDVKVVDAKITDAGIPVGDDGKAISGPAWVHVRACTDISGMTWTKSDGSPAYDVNRPQFVLAQLTVRNADWPDANGWRVTSDAAARYAPCDAP
>NZ_CP046575.1|WP_081276437.1|288705_289653_-|hypothetical-protein
MPNRRRFHAAVIGALVLGSLVASPHSALGQPGFGSGGIDVAPGSGNLGANIVVQGSYVQVPSASPGSGGSSGASAAGTGGGGSGYSGGGDVVAAPTEPPVREQLKACGRFTDCVPLSPNVGMPATPVSMAQVMNVVGTAVTGMQLEEPPMCWTPEPANFPGGRTGLVGKNAWAWVCPDQIRESTVGPVTRVVPGPGGVVVTATAVNSSVTINWGDGSLPTICPGALLPFTPYNDLIDASPLTPPSGLPSPTCGHHIEKTSITQPGGVNNVSASSAWIVNWTAVWPGGGAGGVVPVPLTSNYQQRIGELQVLVTPN
>NZ_CP046575.1|WP_159929882.1|287106_287973_-|CopG-family-transcriptional-regulator
MPGHIHCSEDGSRVTETRPGRIPVGDPIALRFDPETKRKLEDMAEGIGPRRFEALIRVACRRLVTQPKAVGTSLAEQRRLSEALRAIPLVMLKIKLEPDTAQEFAALAAAYDTTVSALMRIALHRFLEAPGRYKHPMLREAERTGLSDWVDVMVNPSSKQQIWRLAGRYGDKLNTSLLRVALRRLLEEPGDLAGDLETIAPLRDLRPEIYARANVHFDEPLRDKLDGLAARVGSDRAELMRLAARRVLEEPGKIEQAVNNEVFRSEKNRKHLMARHARRQARRHTQPD
>NZ_CP046575.1|WP_159929880.1|286171_286987_+|CPBP-family-intramembrane-metalloprotease
MSNDKPRTSTGDLLVASTNPRRPATLKTGFPRLCLAVLLWVFLIFFAGVPTISAQEGNAVGLGLLVLAIIWGVFLLCMLALLGSSHGARATVARARWAARSIGCTLPQPRTIVMLLAVTIVTLAVTALLRGPILDLVVATARTDQSPAQRAADADRSTWSTSGWAGHIPGLTLMSGVVFEELMFRGPLVAAVVFARRYIRSGWPKWAARILIAVLWIFLGYEFGIGHDTFSALNAALMVVAGLLWGVLAIWTKSLLPSIASHALYNLFADW
>NZ_CP046575.1|WP_159929878.1|285414_286005_+|hypothetical-protein
MGAPVKKSTRNSRRPRRGRSASPVRSYAEYTRRLAAGAKSVVIDADPENWLDLGHVPSEVEVKIIGQTCAGIAGGSIAAAGRCFVQASNHARVTAYEHAHIEAFDDSTVDARGKSHIVGTDNARIRAEDSAIVFAHSHCHVQANGQALIAATDTTTVRIDGEAHVRVSGGVRIIGPGRPAKVETHPISRLARHLNF
>NZ_CP046575.1|WP_159929876.1|284787_285315_+|hypothetical-protein
MNRRTTTEIAALSLITAAILTRCSSTEAETLSPSAEPAAAATHVEWSTNPTVDQGQPGVTDAQTRLSETQPATTATQATAAAALPPTSAQCGIVTNNLNGATAPVIVIAGNPSCPAALSISDRYLNDHTVAAQGQGRFAVIDGWNCSWPYLPDRSHADSYLQCVDPTGNAVKIGD
>NZ_CP046575.1|WP_159929874.1|283685_284549_-|hypothetical-protein
MTEPTPELAGSGPSEEPQSPAVGAENAAGQRSDHLSATVYAPAGIVVVASVVVWFAVRWLGVEYGTTGLWWAASACAAGGATLSAAIAPMMARLCKAVDIPSEATGRRIVPAATTAGLWFGAALLTGGDAILTAWLALSLLCVWAGWIDHFTLRFPLTLIRLTTAVGLMLGAFAVAVDQDPAAGGRALLAGMLVFAFNLAFAIVTRGYPGLADVRLSFILGAALGWVGWMNVLSGMLLPNVLALVVMLWVKLIGRRKDLGEFGFAPFLVFGTALAIAVPPMWWIVWI
>NZ_CP046575.1|WP_159929872.1|282742_283621_-|hypothetical-protein
MRMNVPGVFPNTREGKGRGVSDIRVRPIFYRDEVLRLVAVGSVSLACAVGVALWALMVVDVQGGATGWWVGVGCWVGYLGMTLPIFLAYSPNNIDCIRFLVGHYATVVSLGVIATLRLSHGESIAPSSTGMWAAVAGVTVFIFSVACVLAVRELDAARRRGHRATRLTDPTLPAQLIGIRELVLELAAATEGSDSQRDCGERLREAVKGLRLVFGDVYPLTINLVAWFLLRGKPAPVPAEKVDELLATIDQRLLILASVPYEEGTSLGAWMDEYETAASRFRKVYRRPPIRN
>NZ_CP046575.1|WP_159929870.1|282297_282633_-|hypothetical-protein
MDDADRSAPILSIVQTELPCEFCAEHPQYFPGDPVGFVRAARWAVVVKDCCHFDARVDYLLCDEHWAMIRHQQLPGQCPRCGAIAYSVKDIVCTEIPLGRTVDGAWPVIRR
>NZ_CP046575.1|WP_005560298.1|294025_294487_-|pilus-assembly-protein
MTNALRKRLASRLPEEHRDKGAVTLMTVVFAPVLIFFVWGLIVDGGGMLTADQRADNVAEDAARAAGQQIIGSVSARGIDTVVDPVRATAAAKRYLFEAGVDGDVIPTGPRTLLITTRIVYNSKLLPYPRTKLLVGTAAVNLNRTNAGEVYIP
>NZ_CP046575.1|WP_072948901.1|294483_294936_-|hypothetical-protein
MRLTRWISRARRDDRGDVTIELCLAVVILILLLGWMYAYGVNRQAHQKVEHAATEGARAASLARTIATATPLAYQAAAGSMDGQGLKCATMNVNADTSGFRTRPGVPATVEVTVTCQVSFDALGWPGVNGARTVTATAISPIDTYRERTR
>NZ_CP046575.1|WP_159929888.1|294932_295349_-|hypothetical-protein
MVTLEQLIDRWRRDDRGPATLVTVIAMVAFLLIFSVLLQTALFFHGRDVANSCAEKALKNTRSQYGNQALGTAAAYACITQAGRGDLQIPVVLVSKNIRETTVNITGKAPSLVPGLEFPIVVNHTKPTERVTNPGGIG
>NZ_CP046575.1|WP_005560295.1|295539_295797_-|hypothetical-protein
MSITTVATATRRTAREAVTSYITLTMMFVAALAGTLLHRAGGKDSDRGPSTLEYVFLAVLVVGAAAAAGAIVVRKIMSRANAIPD
>NZ_CP046575.1|WP_159929890.1|295923_296823_-|hypothetical-protein
MSIQMTVILYTSVGTIGIYLVALYFMRAQPALSDAMSRLSGPAPERTSTTGTSLIDGMANKLGIRVHPYLQDSKFFTLPNADLALLHRDPAHVLGEKLVAALLGLLIFPFLNLVLTAFGVGLGWSIPAILSIATAFLLFLIPDIEIRRRATAARAEFAQALSSYIDLVALCRRGGIGTTQSLERAAQVGDSWVFLRLDEELYEAGRSGEAPWNALTRVSHELGLTELGDLADIMNMTGDKGASVYSSLRAKAAGLRSAQASAEQGAAAEATEKLAMPLAGLAGLFIMLLLIPALTIITG
>NZ_CP046575.1|WP_005560293.1|296819_297695_-|hypothetical-protein
MYQQIGIFLVLLLCAGVACIVMGWKDRRDPTAPTRQRRRRSSSKIPRSTQILLVVGFAAGIVVSSLSGWLFTLFLVPALLVGLPYLLGRPEAEQQISRLAAMDEWARNLSSSMKAGSGIEHTIISTPIPEALREEITAFISRLRNNVPPVDAITRFASDLNDSVGDKICGALLLSMQLRGVGLAAVLEGLAEDVGDMVARRRRTEADRKSSRTQAKWVTIIAITTLAAAFLFTNFMEPYKSGGMQIVLLILLTLFAADLYWMKQATKPPTYPRFIGTNDRVNRTDLVGAQR
>NZ_CP046575.1|WP_159929892.1|297694_299341_-|Flp-pilus-assembly-complex-ATPase-component
MNSDDATQPPQNKITELPFFSAPIPDADLAGGGRSSVSEITLPDTDPFRSLRLHELPPASTNGHSGTARRFVPPAAKVKVDRALVRALQKEAAELLRDYRSARDRERHDPKNAGKYFAPFTEEEEREFGRETITGLVKNHVQKTINSGGEAFTLVEEEALIKAIFDAQFNLGPLQELVEEPHVTDIFLNGAAVYVKFPDGHYEHRDPVVDTPEELLEWMGLLASRADNGGRPFSRLNPSLRLTMRGGHRLSVMGYSVKRPSVAIRIHRLKNIALDQLAVEHRMMPIELATILSCAVRGGASVVTGGGMGFGKTTFTRALANALPLQTRIGIAETERELFIDELPGREDFVVDAETILGGGERGADGELAGSYTLSDILYEFVRQQLDYMIVGEVAGHEILALLKALQTARGGLSTTHAYTARGVVDRLVNLATEPPMNATVDYVERQLAEHIDLIVQLGTKVRVDGEGSRTSVRYVDEVVYVEPGDDKKPSFSTIYRGYSDGTGEFGSVPQPLLRKLLAGGFKRINLPSDSLRHFDEERDLYDDEEVA
>NZ_CP046575.1|WP_159929894.1|299337_300156_-|hypothetical-protein
MFLALTSASRSPGVSTTALALALNSPTDRTLLVEADAIGSSPVLAGYMLGNHYHDRSLINLVDAHRHGRLKAALTEQLIQIPESSVSLLPGLVHSAQADAMRPVWGPLGVHLAGLSVDDTNVIVDAGRIGQRGAPVELIVNATTIAIVTRTERTAIAALRASQNALRQQLSAVQSRASLGLILIGESPYNAEEVTKVTGLDVIAVLPDSDDAKVFSDGLSISKWRRRRSIYLHTLHRSTWPKITKFAVSHQADWKSGPALNAALPTLTGERR
>NZ_CP046575.1|WP_109336322.1|300162_300870_-|flagellar-biosynthesis-protein-FlgA
MASLLTKKIDKLRSSGDDLPPAHNGADQDDPPDLNTRARVRRRPIYLAIGVALVVVAVIGMLTAVNAMRATTDVLVLTNEVQQGETIESKDLAAKSVNVDADLGALPASERGRVVGMSASTRLPAGTVLLPSAITDQVVPGEGLTMVGITVSYSHLPSEPIVPGDMVRVVDTPRDQDDPPVQGPINTKAQVYSTKEIPEAGETTLNLLVPEAEANWVAARGATKRVAIVLDNRVR
>NZ_CP046575.1|WP_159929896.1|301659_302442_+|helix-turn-helix-domain-containing-protein
MDSISPPSLGDFIRARRTRATPKHPDGMTRAQLGEEIYLSVSYIARLEGNVKDARPSPQVLDATANALCLDDAERRHLFNLARRTQTEREDTTTPWTIADYRTLITPDMKTAIAALNPHLVAYLDERWNVIDCNSAYDKAFPGLVDEGNVLRWFFSTPASMKVMVEWEAEAALTVSWFRALMGRYYNPDWAVETLEELSAFPLFRELWSREEIRFGRHQPFMHLRDAETGEHYSVHVQVHAEMRGKYPLQMYLGVRLPAS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP046575_1	1.1\|293076\|16\|NZ_CP046575\|CRISPRCasFinder	293076-293091	16	NZ_CP046575.1	293106-293121	0	1.0

1. spacer 1.1|293076|16|NZ_CP046575|CRISPRCasFinder matches to position: 293106-293121, mismatch: 0, identity: 1.0

cggaacagcatccgga	CRISPR spacer
cggaacagcatccgga	Protospacer
****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

191113 : 245817

Gordonia_phage(37.5%)

integrase,protease

attL 222283:222307|attR 250037:250061

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159929768.1\|191113_192031_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_159929770.1\|192027_192552_-	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA
WP_159929772.1\|193369_194308_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_159929774.1\|195084_195888_-	hypothetical protein	NA	NA	NA	NA
WP_159929776.1\|196096_196897_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_159929778.1\|197168_198566_-	hypothetical protein	NA	NA	NA	NA
WP_159929780.1\|199907_201695_+	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	5.6e-12	40.4
WP_159929782.1\|202436_204203_+	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	1.1e-10	37.5
WP_159929784.1\|204640_205372_-	DUF3105 domain-containing protein	NA	NA	NA	NA
WP_159929970.1\|205981_207277_-	type II restriction endonuclease	NA	NA	NA	NA
WP_159929786.1\|207740_208700_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_159929788.1\|208696_209077_-	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA
WP_159929790.1\|209597_209813_+	heavy metal transporter	NA	NA	NA	NA
WP_159929792.1\|209935_211852_+	copper resistance protein CopC	NA	NA	NA	NA
WP_159929794.1\|212429_212927_+	hypothetical protein	NA	NA	NA	NA
WP_159929796.1\|216295_216685_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_159929798.1\|217063_217207_+	hypothetical protein	NA	NA	NA	NA
WP_159929800.1\|217249_218197_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_159929802.1\|218193_218562_-	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA
WP_159929804.1\|218801_219137_-	hypothetical protein	NA	NA	NA	NA
WP_159929806.1\|220267_220666_+	DUF2784 family protein	NA	NA	NA	NA
222283:222307	attL	NA	NA	NA	NA
WP_159929808.1\|223161_224685_-	NlpC/P60 family protein	A0A0K0NL58	Gordonia_phage	2.0e-18	45.6
WP_159929972.1\|229296_229623_-	hypothetical protein	NA	NA	NA	NA
WP_159929810.1\|234029_234701_+	peptidoglycan DD-metalloendopeptidase family protein	O03937	Lactobacillus_phage	1.4e-24	54.6
WP_159929812.1\|235578_235923_-	hypothetical protein	A0A1B3AZW1	Gordonia_phage	1.7e-05	32.7
WP_159929974.1\|235919_236171_-	hypothetical protein	NA	NA	NA	NA
WP_159929814.1\|236248_238249_-	cutinase family protein	A0A166Y6Q9	Gordonia_phage	9.8e-05	32.5
WP_159929816.1\|238464_239262_-	hypothetical protein	NA	NA	NA	NA
WP_159929818.1\|239261_241094_-	hypothetical protein	NA	NA	NA	NA
WP_159929819.1\|241095_241428_-	hypothetical protein	NA	NA	NA	NA
WP_159929820.1\|241726_242464_+	DUF1016 family protein	Q9JMP5	Wolbachia_phage	3.5e-53	45.7
WP_159929821.1\|242624_243857_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_159929822.1\|243853_244789_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_159929823.1\|244785_245817_+\|integrase	tyrosine-type recombinase/integrase	A0A2D2W4Z2	Ralstonia_phage	5.0e-05	24.9
250037:250061	attR	NA	NA	NA	NA

DBSCAN-SWA_2

249663 : 286987

Bacillus_phage(22.22%)

integrase,transposase,protease

attL 239554:239573|attR 291037:291056

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
239554:239573	attL	NA	NA	NA	NA
WP_159929600.1\|249663_250922_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	9.4e-30	34.7
WP_159929826.1\|250931_252161_-	hypothetical protein	NA	NA	NA	NA
WP_159929828.1\|252157_252355_-	hypothetical protein	NA	NA	NA	NA
WP_159929976.1\|252878_254110_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	3.4e-32	34.2
WP_159929830.1\|254102_255197_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_159929832.1\|255208_256468_-	hypothetical protein	NA	NA	NA	NA
WP_159929834.1\|256464_257553_-	AAA family ATPase	A0A0M7QAZ4	Escherichia_phage	4.2e-18	29.0
WP_159929978.1\|258100_258835_-	hypothetical protein	NA	NA	NA	NA
WP_043791394.1\|259222_259570_+	Lsr2 family protein	A0A160DEV0	Gordonia_phage	1.7e-13	35.3
WP_005569781.1\|259771_260038_+	hypothetical protein	NA	NA	NA	NA
WP_043791389.1\|260034_260364_+	hypothetical protein	NA	NA	NA	NA
WP_159929836.1\|260353_260860_+	N-formylglutamate amidohydrolase	NA	NA	NA	NA
WP_005569777.1\|260976_261501_+	DUF2441 domain-containing protein	A0A142K9J4	Gordonia_phage	3.3e-13	35.0
WP_159929838.1\|261990_262260_-	WhiB family transcriptional regulator	A0A2P1CGA4	Mycobacterium_phage	1.9e-17	62.9
WP_159929840.1\|262743_263376_+	hypothetical protein	NA	NA	NA	NA
WP_159929842.1\|263404_264130_-	hypothetical protein	NA	NA	NA	NA
WP_159929844.1\|264126_264993_-	hypothetical protein	A0A0N7CDP5	Skermania_phage	8.8e-27	34.8
WP_159929846.1\|264992_265409_-	hypothetical protein	NA	NA	NA	NA
WP_159927971.1\|265873_266476_-	hypothetical protein	NA	NA	NA	NA
WP_159927973.1\|266472_269109_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_087560597.1\|269090_270272_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_159929848.1\|270945_271800_+	phosphoadenosine phosphosulfate reductase family protein	A0A0N7CD74	Skermania_phage	5.1e-19	30.0
WP_159929850.1\|271986_272412_+	hypothetical protein	NA	NA	NA	NA
WP_159929852.1\|272618_272759_-	hypothetical protein	NA	NA	NA	NA
WP_061042814.1\|272976_273333_+	hypothetical protein	NA	NA	NA	NA
WP_159929854.1\|273548_273695_-	hypothetical protein	NA	NA	NA	NA
WP_159929856.1\|273861_274473_-	dihydrofolate reductase	NA	NA	NA	NA
WP_159929980.1\|275018_275723_-	DUF1524 domain-containing protein	NA	NA	NA	NA
WP_159929982.1\|275777_276335_-	3'-5' exonuclease	NA	NA	NA	NA
WP_159929858.1\|276502_276919_-	hypothetical protein	NA	NA	NA	NA
WP_159929860.1\|277047_277995_-	peptidoglycan endopeptidase	A0A1J0GW44	Streptomyces_phage	2.2e-15	47.0
WP_159929862.1\|278267_278462_-	hypothetical protein	NA	NA	NA	NA
WP_159929864.1\|278518_279406_-	hypothetical protein	NA	NA	NA	NA
WP_159929866.1\|279405_280443_-	hypothetical protein	NA	NA	NA	NA
WP_159929868.1\|280882_281836_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_159929870.1\|282297_282633_-	hypothetical protein	NA	NA	NA	NA
WP_159929872.1\|282742_283621_-	hypothetical protein	NA	NA	NA	NA
WP_159929874.1\|283685_284549_-	hypothetical protein	NA	NA	NA	NA
WP_159929876.1\|284787_285315_+	hypothetical protein	NA	NA	NA	NA
WP_159929878.1\|285414_286005_+	hypothetical protein	NA	NA	NA	NA
WP_159929880.1\|286171_286987_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
291037:291056	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP046573

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046573_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046573_1

30551-30698

TypeI-E

Consensus_repeat	Method
GCTATCCCCACGCATGCAGGGAAGA	CRISPRCasFinder

2 spacers

cas6e,cas5,cas7,cse2gr11,RT

The CRISPR arrays of NZ_CP046573_1

>merge|NZ_CP046573|1|30551-30698|CRISPRCasFinder
GTCATCCCCTCGCGTGCAGGGAGGATGGATGATTGGCGTCCTCGCCCGCACCCGGGGGGAGTTATCCCCGCGTGCGCGGGGAGGATTTCGCCAGATCCCTCGGCGTCTACATCGAATTCGGAGTTATCCCCGTGTATGTGGGGACGAC

>NZ_CP046573|1|1|30551-30698|CRISPRCasFinder
GTCATCCCCTCGCGTGCAGGGAGGA	TGGATGATTGGCGTCCTCGCCCGCACCCGGGGGGA
GTTATCCCCGCGTGCGCGGGGAGGA	TTTCGCCAGATCCCTCGGCGTCTACATCGAATTCGGA
GTTATCCCCGTGTATGTGGGGACGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046573.1\|WP_159927724.1\|32707_33532_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP046573.1\|WP_159927710.1\|23944_24478_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927714.1\|25132_25588_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927712.1\|24488_25136_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927734.1\|40349_41423_-\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP046573.1\|WP_159927716.1\|25690_26104_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927740.1\|43821_44805_+\|acetaldehyde-dehydrogenase-(acetylating)	unknown	unknown	gnl\|CDD\|236227
NZ_CP046573.1\|WP_159927718.1\|27336_28536_+\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|223358
NZ_CP046573.1\|WP_159927722.1\|32000_32711_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP046573.1\|WP_159927704.1\|21961_22486_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927732.1\|38213_38528_+\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	gnl\|CDD\|279710
NZ_CP046573.1\|WP_159927708.1\|23187_23892_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927720.1\|29294_29474_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927728.1\|34702_35218_-\|hypothetical-protein	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP046573.1\|WP_159927706.1\|22540_23188_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927726.1\|33569_34520_-\|hypothetical-protein	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP046573.1\|WP_159927702.1\|21472_21667_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927738.1\|42997_43816_+\|2-keto-4-pentenoate-hydratase	unknown	unknown	gnl\|CDD\|183092
NZ_CP046573.1\|WP_159927736.1\|42078_42852_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NZ_CP046573.1\|WP_159927730.1\|37876_38152_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP046573.1\|WP_159927724.1\|32707_33532_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	1.38656e-27
NZ_CP046573.1\|WP_159927728.1\|34702_35218_-\|hypothetical-protein	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.27144e-11
NZ_CP046573.1\|WP_159927740.1\|43821_44805_+\|acetaldehyde-dehydrogenase-(acetylating)	gnl\|CDD\|236227	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated.	0
NZ_CP046573.1\|WP_159927734.1\|40349_41423_-\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	4.48241e-121
NZ_CP046573.1\|WP_159927726.1\|33569_34520_-\|hypothetical-protein	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	4.1675e-44
NZ_CP046573.1\|WP_159927738.1\|42997_43816_+\|2-keto-4-pentenoate-hydratase	gnl\|CDD\|183092	PRK11342, mhpD, 2-keto-4-pentenoate hydratase; Provisional.	3.70152e-89
NZ_CP046573.1\|WP_159927718.1\|27336_28536_+\|NAD-dependent-malic-enzyme	gnl\|CDD\|223358	COG0281, SfcA, Malic enzyme [Energy production and conversion].	1.49346e-164
NZ_CP046573.1\|WP_159927722.1\|32000_32711_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	5.12557e-31
NZ_CP046573.1\|WP_159927736.1\|42078_42852_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.2892e-60
NZ_CP046573.1\|WP_159927732.1\|38213_38528_+\|ribbon-helix-helix-protein,-CopG-family	gnl\|CDD\|279710	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family. The structure of this protein repressor, which is the shortest reported to date and the first isolated from a plasmid, has a homodimeric ribbon-helix-helix arrangement. The helix-turn-helix-like structure is involved in dimerization and not DNA binding as might have been expected.	0.00214343

>NZ_CP046573.1|WP_159927720.1|29294_29474_+|hypothetical-protein
MSGTDRMRTAAMSRSMCSPETRSVMAAAPVAAAADGTGVFVSGDGVDATVFGASSKTTH
>NZ_CP046573.1|WP_159927718.1|27336_28536_+|NAD-dependent-malic-enzyme
MSIVSEMTAPQKVELTDEEIFAGHIGGKLSVETTTALDTQRALSIAYTPGVAQVSRAIHADETLADRYTWTSRLVVVVSDGSAVLGLGDIGPRASLPVMEGKSALFKNFAGLNSIPLVLDTKDPDEIVETLIRLRPSFGAVNLEDISAPRCFEIEKRVIEALDCPVMHDDQHGTAIVVLAALKGAVKVQDRDLHQLRVVISGAGAAGVACANILLAAGIADVTVLDSKGIVSADRKDLNEVKVDLAARTNPAGRRGGTAEALNGADVFLGVSAGTVPEELIATMAADSIVFALSNPDPEIHPDVARKHAAIVATGRSDFPNQINNVLAFPGVFRGALDAGARRITEGMKLAAAEAILSVVGDELAVDKIVPSPLDPRVAPAVAEAVAAAARAEGVTNGL
>NZ_CP046573.1|WP_159927716.1|25690_26104_-|hypothetical-protein
MTDKLKFFSQEWCELALEAVNANAEVYKGFKDPDSFTNRMEFGTIGKDDVACHVEWEKAKIVSWTIRKFDESDLWLKINGTLETWQRAAEGDAEGGKLLVAGKVKFAKGPMSAAIENAGAFNNFLLSWGQVPTDWDV
>NZ_CP046573.1|WP_159927714.1|25132_25588_-|hypothetical-protein
MTTVESETYPVSLYDGDDANGVASIVGMLIGQNVENYPSRVKFARKISRPVSIYSTDTDSACTIVFGTDEAIVYNDIVGRPSVTIKASVDQILDVSQLPMKAGGLIPVGFFTNRGMTVLGGILTHKLVVKGLLTHTLTALRTIALVSVVES
>NZ_CP046573.1|WP_159927712.1|24488_25136_-|hypothetical-protein
MTAISSRNRHTLDSEATMPIASSDEIAPDGFADPPRPASTTTNVARVLLVLALIPVGALYLYPRIYDLTATPYRLDQAVVSAGNYNPALDQIVEHEKVTLAAFDALDKMKASLASVLSTDAAVTAELNTLTGQITGDVQKTLDLAGANVTDLVASLDTLTAHISSLQPPVDGATAAVAGDRATLDAILTDARSTAAKVHSARLSAEESANDLSGK
>NZ_CP046573.1|WP_159927710.1|23944_24478_-|hypothetical-protein
MIFFGRRGGPARLVLSIVAVGVLGLLAFVVFNLNTRLDNQQRANETSITASQGIVDVNDRLTNQLRQLTELTHTAQTALDATAALGPLLTRLDEAITPAAQMLAGSTDGAQLTNEQLTNIQGILGEVQNTVLPLVSSAEAFGDQGRQLLAIVQGLVSDLQGSVAAAQTINQMLPLPG
>NZ_CP046573.1|WP_159927708.1|23187_23892_-|hypothetical-protein
MQQGTDLPDEAYPRRGLAGLQRLDIPASALPYRKGVLPHRLDIPATATPSSTGFAIATEWMGRLAAVLAVVLFGLVLAAIHKGQLVQDSARTIVDNFRLTNEYFAQRADLTAPATAHKQLDELAGVLAQLNTATAADVDHLAALLPDARALLAAGQGDTAIAGQLETVATTLQGSAASLHQISADANTTVSDVNNELTTAIDLVNALNAELARTTNKLALVPEQGAFIPAPGGN
>NZ_CP046573.1|WP_159927706.1|22540_23188_-|hypothetical-protein
MITKKAWLGVVLGLGLAPAVLLCAVNGFLPGLDDVVDPLGRPSQLSLEVIDSAGQFDTLTSILVPKHAQLAGDIQALDPLANDLEGLTTKAGELTGQAKTLNASTGDVSTIAEPLPGLVANVTGRANQASPTVAGLSTAVGSVTTQLEAINTGLTTIEGTLGTLGPKATAIAATLANVEEEARHIQELGPLLAVVGPPVNSLNLPPLGVATTPTP
>NZ_CP046573.1|WP_159927704.1|21961_22486_-|hypothetical-protein
MFRLSWAIALAFTIALLCGILIVTRDLSITNDIFKDGVNQAKIVDKTTNDALSGAKELPPANAAINQGLPEVVGVLNSLTRADQTLGDLGTQLQALGDALKSADAPLGGIIDAGASATDQANAAAVPAGQIVHTLADADAKVQALAPLLDQSLALGQTIDQKLRIALILPVIGN
>NZ_CP046573.1|WP_159927702.1|21472_21667_+|hypothetical-protein
MAPLKVRIAVKNFSKKSMEICFLFDCDHLCDYYRDAPPHACDRDALPELAAGIPCAVPVAESGP
>NZ_CP046573.1|WP_159927722.1|32000_32711_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTTATRTLHQSLLVLDANHGAVRAAIGDAHHMHALVMSGFADRLQQYDFFTGQTTGHADHRAALNIQHAVSLRPDNTIRVLVRSAVPPHWDTDASGKWVDALTTAPASHEYIPLLEGAVRYELRANPIRKGPDGRRKIALRQHDDLVNWWHRRATNAGLTLTGTPSIDLPWTLTSRTKTDRTTQHKAGAGFTIGTHRFTGFAIITNPDAHLAALTEGIGSARAYGCGLLLTMRPPR
>NZ_CP046573.1|WP_159927724.1|32707_33532_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTSSVLVRLDGPMQSWGDKPRGAYRSSHTRPTKSGVIGLVANALGRDYTDPVDDLAAMHFAVRVDRAGHIEIDYHTTGSGTYPLLPGGVYADATLRKKARNRDPRDPDFGFIYAPPASVARDKTGELVAKPGNTNQTRDRYLADASFLVALTGDDTLTETVNTALTSPARAVFLGRKAYLPTQPLSAGLVTDIDSSDPFAALRTAPRSTRSDSGPLHAWADTVPGSAGSVVVHDQPISYAGTRQRGARAETHTTLTPPEPVTEVGYDFFQEAAP
>NZ_CP046573.1|WP_159927726.1|33569_34520_-|hypothetical-protein
MEARHPRVHAPDRHRRRRLRHRTNRFPMLVAQHLATTHGRELDIATAKAAAVFTALKFKATDKGTTAASIFASESLPTQLGATIDAHWDSIGDTVPDDVVTAARAALDVDNTIDLALFGRMLAEIPVGGRIDGAVGVSHAFSVDPQAIEPDFFTAVDDAAPEGEAASGNLGVVQIAAPVLYRTAYLDRAQLRRNLAAAPDPERLAADAETAFIDWFIRAVPDSKQRSTVAATLPSLVVAVTGPQVLSAADAFADAVRSDNVVATATTRLVDAVTRHANFVPGITVERLARAADLPAAVADGAHTRSADFIAAVRAA
>NZ_CP046573.1|WP_159927728.1|34702_35218_-|hypothetical-protein
MHSPRDHKLGNRVAHRAKRLSALRRWEYPTVDRAVIAVTEGADEDDYLLYALAGKAFTIWHSGRSDVHYGKTGTGLGRAMRQLGRAGAYGPRDPRAERALATLLDADTPHRLAAALDSVMAAVSGVDHPPHWETLISDLRDWHNPTRRDQVRLRWGQQFYTAPPKPTEPTD
>NZ_CP046573.1|WP_159927730.1|37876_38152_+|hypothetical-protein
MAIEWAKSADKHGIDRDDALHAIENAVYVEQEFDEPRVPGHSKPWLFIGPPRTLGGPLLEVMVEIVPPRGMVVFHVMQARQKHLHRMTDQP
>NZ_CP046573.1|WP_159927732.1|38213_38528_+|ribbon-helix-helix-protein,-CopG-family
MNSNDKNSDYDELAEWAEHEMTLPKNSATAKRGAEAAAAGRELLERVGAGRPSLAGAGGESPKRQVRLPAPLSNKLDELAERQHRKPSELMREAVEEYIQRHSA
>NZ_CP046573.1|WP_159927734.1|40349_41423_-|group-II-intron-reverse-transcriptase/maturase
MRAVEIPKPHGGGTRVLGIPCVGDRVAQTMVALALEPRTESIFHDDSYGYRPERGALDAVAKCRERCWQKAWVIDLDVSKFFDSVDHDLMAKAVAANTTHEQRWIVLYVRRWMVAPILMPDGRLVERDRGTPQRSAVSPVLANLFMHYAFDMWLEREFPTVEFERYADDAVVHCATEHRAREVLAALEVRMAEVGLQLHPAKTKIVYCKDKNRRLECENTSFTFLGYTFRARKAQTRDGLRVFSAFLPAMGADALKAKSAEVKGWRIHLRTAKDLSELAGWMNPIIRGWMTYYGKFYRSEIYVLLRRINTYLVRWARRKFKRLRSFKRAERWWKGILRRQPRLFAHWDWMADFQWIR
>NZ_CP046573.1|WP_159927736.1|42078_42852_-|helix-turn-helix-domain-containing-protein
MSDQEFDRTTVLGKVMMVLHAFTIDDSTLSLAELARRTSIPKGTLHRILTDMVTVRMLDRTGAGYRLGGSLFELGMRASVERSLLEVAIPFMEDLYVRTHETVHLGVLDGTEVVYLSKIGGHRQASAPSRIGGRMPVHCTAIGKVLLAHADKTLREQVLSAPLARYTPRTIILPGPLRTQLDRITEEGMAYEYEESATGIVCVAAPVRDGEDVVAAISVTGPSHRFRPDTHATSVRAAADGIGLTLSRRTQLVADTR
>NZ_CP046573.1|WP_159927738.1|42997_43816_+|2-keto-4-pentenoate-hydratase
MSTPPGTSLPSTTDAVAAAAERLSTAAATSTPCAPVRDLIGADDVAAAYAVQERIVAGRIAAGASVVGRKIGLTSPAVQQQLGVDQPDFGVLFDDMYCQETTPIPLSRLLQPKVEAEIAFVLDHDLVDGPLDDAQIRAAVDYAVAALEIVDSRIAGWDITFGDTVADNGSSGLFVLGENRRTLDSVDPVAAQMQMSIDGTEVSTGTGAACLGDPLRALAWLARTAREFGQPLLAGQVILSGALGPMAVIDTAGTVRADITGLGSVTATFTQE
>NZ_CP046573.1|WP_159927740.1|43821_44805_+|acetaldehyde-dehydrogenase-(acetylating)
MSVNTRTVTVAVIGSGNIGTDLMIKVIRHSDVLQMGAMVGIDPDSDGLARARRLGVPTTAGGVQGLLQLPNFDEIDVIFDATSAKAHAANAALLEPLGKRLIDLTPAALGPFVVPAVNLDEHRDATNVNMVTCGGQATIPIVAAVSRVTPVAYAEIVASIASKSAGPGTRANIDEFTETTSHAIETVGGARRGKAIIILNPADPPLIMRDTVLCLISAPDPATHDAIRNSIQTMVDHVATYVPGYRLKQQVQITPVPDGQPVHTLLASGDTAAPTHQVTVFLEVEGAAHYLPAYAGNLDIMTSAAVRYAESVADTIAAPAATQGATR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP046573_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046573_2

30856-31122

TypeI-E

Consensus_repeat	Method
ATCCCCGCGNNNNCGGGGAGGAT	CRT
GCTATCCCCACGCATGCAGGGAAGA	CRISPRCasFinder

4 spacers

cas6e,cas5,cas7,cse2gr11,RT

The CRISPR arrays of NZ_CP046573_2

>merge|NZ_CP046573|2|30856-31122|CRT,CRISPRCasFinder
ATCCCCGCGTGCACGGAGAGGATTTCGACTCGATTGATGTAAGACAGCAACGAACGGAGTTATCCCCGAGTGCACGGGGAGGATCGGTCCGAACCGAGTCCATTGAGTCACGACCAGGAGTCATCCCCGCGCATGCGGGGAGGATATCGTCATCATGGTCGGATCGGGAAGGTCCGCGGAGTCATCCCCGCGCATGCGGGGAGGATATCCCACTGACTGCTCCGTGGACGGTAGGGGAGGAGTTATTCCCGCGCATGCGGGGAGGAT

>NZ_CP046573|2|1|30856-31122|CRT
ATCCCCGCGTGCACGGAGAGGAT	TTCGACTCGATTGATGTAAGACAGCAACGAACGGAGTT
ATCCCCGAGTGCACGGGGAGGAT	CGGTCCGAACCGAGTCCATTGAGTCACGACCAGGAGTC
ATCCCCGCGCATGCGGGGAGGAT	ATCGTCATCATGGTCGGATCGGGAAGGTCCGCGGAGTC
ATCCCCGCGCATGCGGGGAGGAT	ATCCCACTGACTGCTCCGTGGACGGTAGGGGAGGAGTT
ATTCCCGCGCATGCGGGGAGGAT

>NZ_CP046573|2|2|30975-31122|CRISPRCasFinder
GTCATCCCCGCGCATGCGGGGAGGA	TATCGTCATCATGGTCGGATCGGGAAGGTCCGCGGA
GTCATCCCCGCGCATGCGGGGAGGA	TATCCCACTGACTGCTCCGTGGACGGTAGGGGAGGA
GTTATTCCCGCGCATGCGGGGAGGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046573.1\|WP_159927724.1\|32707_33532_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP046573.1\|WP_159927710.1\|23944_24478_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927714.1\|25132_25588_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927712.1\|24488_25136_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927734.1\|40349_41423_-\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP046573.1\|WP_159927716.1\|25690_26104_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927740.1\|43821_44805_+\|acetaldehyde-dehydrogenase-(acetylating)	unknown	unknown	gnl\|CDD\|236227
NZ_CP046573.1\|WP_159927718.1\|27336_28536_+\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|223358
NZ_CP046573.1\|WP_159927722.1\|32000_32711_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP046573.1\|WP_159927704.1\|21961_22486_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927732.1\|38213_38528_+\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	gnl\|CDD\|279710
NZ_CP046573.1\|WP_159927708.1\|23187_23892_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927720.1\|29294_29474_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927728.1\|34702_35218_-\|hypothetical-protein	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP046573.1\|WP_159927706.1\|22540_23188_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927726.1\|33569_34520_-\|hypothetical-protein	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP046573.1\|WP_159927702.1\|21472_21667_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927738.1\|42997_43816_+\|2-keto-4-pentenoate-hydratase	unknown	unknown	gnl\|CDD\|183092
NZ_CP046573.1\|WP_159927736.1\|42078_42852_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NZ_CP046573.1\|WP_159927730.1\|37876_38152_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP046573.1\|WP_159927724.1\|32707_33532_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	1.38656e-27
NZ_CP046573.1\|WP_159927728.1\|34702_35218_-\|hypothetical-protein	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.27144e-11
NZ_CP046573.1\|WP_159927740.1\|43821_44805_+\|acetaldehyde-dehydrogenase-(acetylating)	gnl\|CDD\|236227	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated.	0
NZ_CP046573.1\|WP_159927734.1\|40349_41423_-\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	4.48241e-121
NZ_CP046573.1\|WP_159927726.1\|33569_34520_-\|hypothetical-protein	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	4.1675e-44
NZ_CP046573.1\|WP_159927738.1\|42997_43816_+\|2-keto-4-pentenoate-hydratase	gnl\|CDD\|183092	PRK11342, mhpD, 2-keto-4-pentenoate hydratase; Provisional.	3.70152e-89
NZ_CP046573.1\|WP_159927718.1\|27336_28536_+\|NAD-dependent-malic-enzyme	gnl\|CDD\|223358	COG0281, SfcA, Malic enzyme [Energy production and conversion].	1.49346e-164
NZ_CP046573.1\|WP_159927722.1\|32000_32711_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	5.12557e-31
NZ_CP046573.1\|WP_159927736.1\|42078_42852_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.2892e-60
NZ_CP046573.1\|WP_159927732.1\|38213_38528_+\|ribbon-helix-helix-protein,-CopG-family	gnl\|CDD\|279710	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family. The structure of this protein repressor, which is the shortest reported to date and the first isolated from a plasmid, has a homodimeric ribbon-helix-helix arrangement. The helix-turn-helix-like structure is involved in dimerization and not DNA binding as might have been expected.	0.00214343

>NZ_CP046573.1|WP_159927720.1|29294_29474_+|hypothetical-protein
MSGTDRMRTAAMSRSMCSPETRSVMAAAPVAAAADGTGVFVSGDGVDATVFGASSKTTH
>NZ_CP046573.1|WP_159927718.1|27336_28536_+|NAD-dependent-malic-enzyme
MSIVSEMTAPQKVELTDEEIFAGHIGGKLSVETTTALDTQRALSIAYTPGVAQVSRAIHADETLADRYTWTSRLVVVVSDGSAVLGLGDIGPRASLPVMEGKSALFKNFAGLNSIPLVLDTKDPDEIVETLIRLRPSFGAVNLEDISAPRCFEIEKRVIEALDCPVMHDDQHGTAIVVLAALKGAVKVQDRDLHQLRVVISGAGAAGVACANILLAAGIADVTVLDSKGIVSADRKDLNEVKVDLAARTNPAGRRGGTAEALNGADVFLGVSAGTVPEELIATMAADSIVFALSNPDPEIHPDVARKHAAIVATGRSDFPNQINNVLAFPGVFRGALDAGARRITEGMKLAAAEAILSVVGDELAVDKIVPSPLDPRVAPAVAEAVAAAARAEGVTNGL
>NZ_CP046573.1|WP_159927716.1|25690_26104_-|hypothetical-protein
MTDKLKFFSQEWCELALEAVNANAEVYKGFKDPDSFTNRMEFGTIGKDDVACHVEWEKAKIVSWTIRKFDESDLWLKINGTLETWQRAAEGDAEGGKLLVAGKVKFAKGPMSAAIENAGAFNNFLLSWGQVPTDWDV
>NZ_CP046573.1|WP_159927714.1|25132_25588_-|hypothetical-protein
MTTVESETYPVSLYDGDDANGVASIVGMLIGQNVENYPSRVKFARKISRPVSIYSTDTDSACTIVFGTDEAIVYNDIVGRPSVTIKASVDQILDVSQLPMKAGGLIPVGFFTNRGMTVLGGILTHKLVVKGLLTHTLTALRTIALVSVVES
>NZ_CP046573.1|WP_159927712.1|24488_25136_-|hypothetical-protein
MTAISSRNRHTLDSEATMPIASSDEIAPDGFADPPRPASTTTNVARVLLVLALIPVGALYLYPRIYDLTATPYRLDQAVVSAGNYNPALDQIVEHEKVTLAAFDALDKMKASLASVLSTDAAVTAELNTLTGQITGDVQKTLDLAGANVTDLVASLDTLTAHISSLQPPVDGATAAVAGDRATLDAILTDARSTAAKVHSARLSAEESANDLSGK
>NZ_CP046573.1|WP_159927710.1|23944_24478_-|hypothetical-protein
MIFFGRRGGPARLVLSIVAVGVLGLLAFVVFNLNTRLDNQQRANETSITASQGIVDVNDRLTNQLRQLTELTHTAQTALDATAALGPLLTRLDEAITPAAQMLAGSTDGAQLTNEQLTNIQGILGEVQNTVLPLVSSAEAFGDQGRQLLAIVQGLVSDLQGSVAAAQTINQMLPLPG
>NZ_CP046573.1|WP_159927708.1|23187_23892_-|hypothetical-protein
MQQGTDLPDEAYPRRGLAGLQRLDIPASALPYRKGVLPHRLDIPATATPSSTGFAIATEWMGRLAAVLAVVLFGLVLAAIHKGQLVQDSARTIVDNFRLTNEYFAQRADLTAPATAHKQLDELAGVLAQLNTATAADVDHLAALLPDARALLAAGQGDTAIAGQLETVATTLQGSAASLHQISADANTTVSDVNNELTTAIDLVNALNAELARTTNKLALVPEQGAFIPAPGGN
>NZ_CP046573.1|WP_159927706.1|22540_23188_-|hypothetical-protein
MITKKAWLGVVLGLGLAPAVLLCAVNGFLPGLDDVVDPLGRPSQLSLEVIDSAGQFDTLTSILVPKHAQLAGDIQALDPLANDLEGLTTKAGELTGQAKTLNASTGDVSTIAEPLPGLVANVTGRANQASPTVAGLSTAVGSVTTQLEAINTGLTTIEGTLGTLGPKATAIAATLANVEEEARHIQELGPLLAVVGPPVNSLNLPPLGVATTPTP
>NZ_CP046573.1|WP_159927704.1|21961_22486_-|hypothetical-protein
MFRLSWAIALAFTIALLCGILIVTRDLSITNDIFKDGVNQAKIVDKTTNDALSGAKELPPANAAINQGLPEVVGVLNSLTRADQTLGDLGTQLQALGDALKSADAPLGGIIDAGASATDQANAAAVPAGQIVHTLADADAKVQALAPLLDQSLALGQTIDQKLRIALILPVIGN
>NZ_CP046573.1|WP_159927702.1|21472_21667_+|hypothetical-protein
MAPLKVRIAVKNFSKKSMEICFLFDCDHLCDYYRDAPPHACDRDALPELAAGIPCAVPVAESGP
>NZ_CP046573.1|WP_159927722.1|32000_32711_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTTATRTLHQSLLVLDANHGAVRAAIGDAHHMHALVMSGFADRLQQYDFFTGQTTGHADHRAALNIQHAVSLRPDNTIRVLVRSAVPPHWDTDASGKWVDALTTAPASHEYIPLLEGAVRYELRANPIRKGPDGRRKIALRQHDDLVNWWHRRATNAGLTLTGTPSIDLPWTLTSRTKTDRTTQHKAGAGFTIGTHRFTGFAIITNPDAHLAALTEGIGSARAYGCGLLLTMRPPR
>NZ_CP046573.1|WP_159927724.1|32707_33532_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTSSVLVRLDGPMQSWGDKPRGAYRSSHTRPTKSGVIGLVANALGRDYTDPVDDLAAMHFAVRVDRAGHIEIDYHTTGSGTYPLLPGGVYADATLRKKARNRDPRDPDFGFIYAPPASVARDKTGELVAKPGNTNQTRDRYLADASFLVALTGDDTLTETVNTALTSPARAVFLGRKAYLPTQPLSAGLVTDIDSSDPFAALRTAPRSTRSDSGPLHAWADTVPGSAGSVVVHDQPISYAGTRQRGARAETHTTLTPPEPVTEVGYDFFQEAAP
>NZ_CP046573.1|WP_159927726.1|33569_34520_-|hypothetical-protein
MEARHPRVHAPDRHRRRRLRHRTNRFPMLVAQHLATTHGRELDIATAKAAAVFTALKFKATDKGTTAASIFASESLPTQLGATIDAHWDSIGDTVPDDVVTAARAALDVDNTIDLALFGRMLAEIPVGGRIDGAVGVSHAFSVDPQAIEPDFFTAVDDAAPEGEAASGNLGVVQIAAPVLYRTAYLDRAQLRRNLAAAPDPERLAADAETAFIDWFIRAVPDSKQRSTVAATLPSLVVAVTGPQVLSAADAFADAVRSDNVVATATTRLVDAVTRHANFVPGITVERLARAADLPAAVADGAHTRSADFIAAVRAA
>NZ_CP046573.1|WP_159927728.1|34702_35218_-|hypothetical-protein
MHSPRDHKLGNRVAHRAKRLSALRRWEYPTVDRAVIAVTEGADEDDYLLYALAGKAFTIWHSGRSDVHYGKTGTGLGRAMRQLGRAGAYGPRDPRAERALATLLDADTPHRLAAALDSVMAAVSGVDHPPHWETLISDLRDWHNPTRRDQVRLRWGQQFYTAPPKPTEPTD
>NZ_CP046573.1|WP_159927730.1|37876_38152_+|hypothetical-protein
MAIEWAKSADKHGIDRDDALHAIENAVYVEQEFDEPRVPGHSKPWLFIGPPRTLGGPLLEVMVEIVPPRGMVVFHVMQARQKHLHRMTDQP
>NZ_CP046573.1|WP_159927732.1|38213_38528_+|ribbon-helix-helix-protein,-CopG-family
MNSNDKNSDYDELAEWAEHEMTLPKNSATAKRGAEAAAAGRELLERVGAGRPSLAGAGGESPKRQVRLPAPLSNKLDELAERQHRKPSELMREAVEEYIQRHSA
>NZ_CP046573.1|WP_159927734.1|40349_41423_-|group-II-intron-reverse-transcriptase/maturase
MRAVEIPKPHGGGTRVLGIPCVGDRVAQTMVALALEPRTESIFHDDSYGYRPERGALDAVAKCRERCWQKAWVIDLDVSKFFDSVDHDLMAKAVAANTTHEQRWIVLYVRRWMVAPILMPDGRLVERDRGTPQRSAVSPVLANLFMHYAFDMWLEREFPTVEFERYADDAVVHCATEHRAREVLAALEVRMAEVGLQLHPAKTKIVYCKDKNRRLECENTSFTFLGYTFRARKAQTRDGLRVFSAFLPAMGADALKAKSAEVKGWRIHLRTAKDLSELAGWMNPIIRGWMTYYGKFYRSEIYVLLRRINTYLVRWARRKFKRLRSFKRAERWWKGILRRQPRLFAHWDWMADFQWIR
>NZ_CP046573.1|WP_159927736.1|42078_42852_-|helix-turn-helix-domain-containing-protein
MSDQEFDRTTVLGKVMMVLHAFTIDDSTLSLAELARRTSIPKGTLHRILTDMVTVRMLDRTGAGYRLGGSLFELGMRASVERSLLEVAIPFMEDLYVRTHETVHLGVLDGTEVVYLSKIGGHRQASAPSRIGGRMPVHCTAIGKVLLAHADKTLREQVLSAPLARYTPRTIILPGPLRTQLDRITEEGMAYEYEESATGIVCVAAPVRDGEDVVAAISVTGPSHRFRPDTHATSVRAAADGIGLTLSRRTQLVADTR
>NZ_CP046573.1|WP_159927738.1|42997_43816_+|2-keto-4-pentenoate-hydratase
MSTPPGTSLPSTTDAVAAAAERLSTAAATSTPCAPVRDLIGADDVAAAYAVQERIVAGRIAAGASVVGRKIGLTSPAVQQQLGVDQPDFGVLFDDMYCQETTPIPLSRLLQPKVEAEIAFVLDHDLVDGPLDDAQIRAAVDYAVAALEIVDSRIAGWDITFGDTVADNGSSGLFVLGENRRTLDSVDPVAAQMQMSIDGTEVSTGTGAACLGDPLRALAWLARTAREFGQPLLAGQVILSGALGPMAVIDTAGTVRADITGLGSVTATFTQE
>NZ_CP046573.1|WP_159927740.1|43821_44805_+|acetaldehyde-dehydrogenase-(acetylating)
MSVNTRTVTVAVIGSGNIGTDLMIKVIRHSDVLQMGAMVGIDPDSDGLARARRLGVPTTAGGVQGLLQLPNFDEIDVIFDATSAKAHAANAALLEPLGKRLIDLTPAALGPFVVPAVNLDEHRDATNVNMVTCGGQATIPIVAAVSRVTPVAYAEIVASIASKSAGPGTRANIDEFTETTSHAIETVGGARRGKAIIILNPADPPLIMRDTVLCLISAPDPATHDAIRNSIQTMVDHVATYVPGYRLKQQVQITPVPDGQPVHTLLASGDTAAPTHQVTVFLEVEGAAHYLPAYAGNLDIMTSAAVRYAESVADTIAAPAATQGATR

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Crispr_ID: NZ_CP046573_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046573_3

31425-31757

TypeI-E

Consensus_repeat	Method
GCTATCCCCACGCATGCGGGGAAGAT	PILER-CR
GCTATCCCCACGCATGCAGGGAAGA	CRISPRCasFinder

5 spacers

cas6e,cas5,cas7,cse2gr11,RT

The CRISPR arrays of NZ_CP046573_3

>merge|NZ_CP046573|3|31425-31757|PILER-CR,CRISPRCasFinder
GCTATCCCCACGCATGCGGGGAAGATGATTGGTGGTCGCGACATGCCGTGAGGATGTAGGGGGTATCCCCACGCATGCGGGGAAGATGTGGCGGGACGTACTCGCCCGAGTCGTAGTCCCAGGAGCTATCCCCACGCATGCAGGGAAGAAGTTTCCCAGGCATATCCAAGATGGGTTGAATCGGGGCTATCCCCACGCATGCAGGGAAGATACCCCGGCGATCGTCTCCGGCGTGATCACCTTCGGGCTATCCCCACGTATGCGGGGAAGATCCACGCATCAGATCCGGGCAGCGCTACGGCTTGGGGCTATCCCCACGTATGCGGGGAAGAT

>NZ_CP046573|3|1|31425-31757|PILER-CR
GCTATCCCCACGCATGCGGGGAAGAT	GATTGGTGGTCGCGACATGCCGTGAGGATGTAGGG
GGTATCCCCACGCATGCGGGGAAGAT	GTGGCGGGACGTACTCGCCCGAGTCGTAGTCCCAGGA
GCTATCCCCACGCATGCAGGGAAGAA	GTTTCCCAGGCATATCCAAGATGGGTTGAATCGGG
GCTATCCCCACGCATGCAGGGAAGAT	ACCCCGGCGATCGTCTCCGGCGTGATCACCTTCGG
GCTATCCCCACGTATGCGGGGAAGAT	CCACGCATCAGATCCGGGCAGCGCTACGGCTTGGG
GCTATCCCCACGTATGCGGGGAAGAT

>NZ_CP046573|3|3|31425-31756|CRISPRCasFinder
GCTATCCCCACGCATGCGGGGAAGA	TGATTGGTGGTCGCGACATGCCGTGAGGATGTAGGG
GGTATCCCCACGCATGCGGGGAAGA	TGTGGCGGGACGTACTCGCCCGAGTCGTAGTCCCAGGA
GCTATCCCCACGCATGCAGGGAAGA	AGTTTCCCAGGCATATCCAAGATGGGTTGAATCGGG
GCTATCCCCACGCATGCAGGGAAGA	TACCCCGGCGATCGTCTCCGGCGTGATCACCTTCGG
GCTATCCCCACGTATGCGGGGAAGA	TCCACGCATCAGATCCGGGCAGCGCTACGGCTTGGG
GCTATCCCCACGTATGCGGGGAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046573.1\|WP_159927724.1\|32707_33532_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP046573.1\|WP_159927710.1\|23944_24478_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927714.1\|25132_25588_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927712.1\|24488_25136_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927734.1\|40349_41423_-\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP046573.1\|WP_159927716.1\|25690_26104_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927740.1\|43821_44805_+\|acetaldehyde-dehydrogenase-(acetylating)	unknown	unknown	gnl\|CDD\|236227
NZ_CP046573.1\|WP_159927718.1\|27336_28536_+\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|223358
NZ_CP046573.1\|WP_159927722.1\|32000_32711_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP046573.1\|WP_159927704.1\|21961_22486_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927732.1\|38213_38528_+\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	gnl\|CDD\|279710
NZ_CP046573.1\|WP_159927708.1\|23187_23892_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927720.1\|29294_29474_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927728.1\|34702_35218_-\|hypothetical-protein	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP046573.1\|WP_159927706.1\|22540_23188_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927726.1\|33569_34520_-\|hypothetical-protein	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP046573.1\|WP_159927702.1\|21472_21667_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159927738.1\|42997_43816_+\|2-keto-4-pentenoate-hydratase	unknown	unknown	gnl\|CDD\|183092
NZ_CP046573.1\|WP_159927736.1\|42078_42852_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NZ_CP046573.1\|WP_159927730.1\|37876_38152_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP046573.1\|WP_159927724.1\|32707_33532_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	1.38656e-27
NZ_CP046573.1\|WP_159927728.1\|34702_35218_-\|hypothetical-protein	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.27144e-11
NZ_CP046573.1\|WP_159927740.1\|43821_44805_+\|acetaldehyde-dehydrogenase-(acetylating)	gnl\|CDD\|236227	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated.	0
NZ_CP046573.1\|WP_159927734.1\|40349_41423_-\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	4.48241e-121
NZ_CP046573.1\|WP_159927726.1\|33569_34520_-\|hypothetical-protein	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	4.1675e-44
NZ_CP046573.1\|WP_159927738.1\|42997_43816_+\|2-keto-4-pentenoate-hydratase	gnl\|CDD\|183092	PRK11342, mhpD, 2-keto-4-pentenoate hydratase; Provisional.	3.70152e-89
NZ_CP046573.1\|WP_159927718.1\|27336_28536_+\|NAD-dependent-malic-enzyme	gnl\|CDD\|223358	COG0281, SfcA, Malic enzyme [Energy production and conversion].	1.49346e-164
NZ_CP046573.1\|WP_159927722.1\|32000_32711_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	5.12557e-31
NZ_CP046573.1\|WP_159927736.1\|42078_42852_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.2892e-60
NZ_CP046573.1\|WP_159927732.1\|38213_38528_+\|ribbon-helix-helix-protein,-CopG-family	gnl\|CDD\|279710	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family. The structure of this protein repressor, which is the shortest reported to date and the first isolated from a plasmid, has a homodimeric ribbon-helix-helix arrangement. The helix-turn-helix-like structure is involved in dimerization and not DNA binding as might have been expected.	0.00214343

>NZ_CP046573.1|WP_159927720.1|29294_29474_+|hypothetical-protein
MSGTDRMRTAAMSRSMCSPETRSVMAAAPVAAAADGTGVFVSGDGVDATVFGASSKTTH
>NZ_CP046573.1|WP_159927718.1|27336_28536_+|NAD-dependent-malic-enzyme
MSIVSEMTAPQKVELTDEEIFAGHIGGKLSVETTTALDTQRALSIAYTPGVAQVSRAIHADETLADRYTWTSRLVVVVSDGSAVLGLGDIGPRASLPVMEGKSALFKNFAGLNSIPLVLDTKDPDEIVETLIRLRPSFGAVNLEDISAPRCFEIEKRVIEALDCPVMHDDQHGTAIVVLAALKGAVKVQDRDLHQLRVVISGAGAAGVACANILLAAGIADVTVLDSKGIVSADRKDLNEVKVDLAARTNPAGRRGGTAEALNGADVFLGVSAGTVPEELIATMAADSIVFALSNPDPEIHPDVARKHAAIVATGRSDFPNQINNVLAFPGVFRGALDAGARRITEGMKLAAAEAILSVVGDELAVDKIVPSPLDPRVAPAVAEAVAAAARAEGVTNGL
>NZ_CP046573.1|WP_159927716.1|25690_26104_-|hypothetical-protein
MTDKLKFFSQEWCELALEAVNANAEVYKGFKDPDSFTNRMEFGTIGKDDVACHVEWEKAKIVSWTIRKFDESDLWLKINGTLETWQRAAEGDAEGGKLLVAGKVKFAKGPMSAAIENAGAFNNFLLSWGQVPTDWDV
>NZ_CP046573.1|WP_159927714.1|25132_25588_-|hypothetical-protein
MTTVESETYPVSLYDGDDANGVASIVGMLIGQNVENYPSRVKFARKISRPVSIYSTDTDSACTIVFGTDEAIVYNDIVGRPSVTIKASVDQILDVSQLPMKAGGLIPVGFFTNRGMTVLGGILTHKLVVKGLLTHTLTALRTIALVSVVES
>NZ_CP046573.1|WP_159927712.1|24488_25136_-|hypothetical-protein
MTAISSRNRHTLDSEATMPIASSDEIAPDGFADPPRPASTTTNVARVLLVLALIPVGALYLYPRIYDLTATPYRLDQAVVSAGNYNPALDQIVEHEKVTLAAFDALDKMKASLASVLSTDAAVTAELNTLTGQITGDVQKTLDLAGANVTDLVASLDTLTAHISSLQPPVDGATAAVAGDRATLDAILTDARSTAAKVHSARLSAEESANDLSGK
>NZ_CP046573.1|WP_159927710.1|23944_24478_-|hypothetical-protein
MIFFGRRGGPARLVLSIVAVGVLGLLAFVVFNLNTRLDNQQRANETSITASQGIVDVNDRLTNQLRQLTELTHTAQTALDATAALGPLLTRLDEAITPAAQMLAGSTDGAQLTNEQLTNIQGILGEVQNTVLPLVSSAEAFGDQGRQLLAIVQGLVSDLQGSVAAAQTINQMLPLPG
>NZ_CP046573.1|WP_159927708.1|23187_23892_-|hypothetical-protein
MQQGTDLPDEAYPRRGLAGLQRLDIPASALPYRKGVLPHRLDIPATATPSSTGFAIATEWMGRLAAVLAVVLFGLVLAAIHKGQLVQDSARTIVDNFRLTNEYFAQRADLTAPATAHKQLDELAGVLAQLNTATAADVDHLAALLPDARALLAAGQGDTAIAGQLETVATTLQGSAASLHQISADANTTVSDVNNELTTAIDLVNALNAELARTTNKLALVPEQGAFIPAPGGN
>NZ_CP046573.1|WP_159927706.1|22540_23188_-|hypothetical-protein
MITKKAWLGVVLGLGLAPAVLLCAVNGFLPGLDDVVDPLGRPSQLSLEVIDSAGQFDTLTSILVPKHAQLAGDIQALDPLANDLEGLTTKAGELTGQAKTLNASTGDVSTIAEPLPGLVANVTGRANQASPTVAGLSTAVGSVTTQLEAINTGLTTIEGTLGTLGPKATAIAATLANVEEEARHIQELGPLLAVVGPPVNSLNLPPLGVATTPTP
>NZ_CP046573.1|WP_159927704.1|21961_22486_-|hypothetical-protein
MFRLSWAIALAFTIALLCGILIVTRDLSITNDIFKDGVNQAKIVDKTTNDALSGAKELPPANAAINQGLPEVVGVLNSLTRADQTLGDLGTQLQALGDALKSADAPLGGIIDAGASATDQANAAAVPAGQIVHTLADADAKVQALAPLLDQSLALGQTIDQKLRIALILPVIGN
>NZ_CP046573.1|WP_159927702.1|21472_21667_+|hypothetical-protein
MAPLKVRIAVKNFSKKSMEICFLFDCDHLCDYYRDAPPHACDRDALPELAAGIPCAVPVAESGP
>NZ_CP046573.1|WP_159927722.1|32000_32711_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTTATRTLHQSLLVLDANHGAVRAAIGDAHHMHALVMSGFADRLQQYDFFTGQTTGHADHRAALNIQHAVSLRPDNTIRVLVRSAVPPHWDTDASGKWVDALTTAPASHEYIPLLEGAVRYELRANPIRKGPDGRRKIALRQHDDLVNWWHRRATNAGLTLTGTPSIDLPWTLTSRTKTDRTTQHKAGAGFTIGTHRFTGFAIITNPDAHLAALTEGIGSARAYGCGLLLTMRPPR
>NZ_CP046573.1|WP_159927724.1|32707_33532_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTSSVLVRLDGPMQSWGDKPRGAYRSSHTRPTKSGVIGLVANALGRDYTDPVDDLAAMHFAVRVDRAGHIEIDYHTTGSGTYPLLPGGVYADATLRKKARNRDPRDPDFGFIYAPPASVARDKTGELVAKPGNTNQTRDRYLADASFLVALTGDDTLTETVNTALTSPARAVFLGRKAYLPTQPLSAGLVTDIDSSDPFAALRTAPRSTRSDSGPLHAWADTVPGSAGSVVVHDQPISYAGTRQRGARAETHTTLTPPEPVTEVGYDFFQEAAP
>NZ_CP046573.1|WP_159927726.1|33569_34520_-|hypothetical-protein
MEARHPRVHAPDRHRRRRLRHRTNRFPMLVAQHLATTHGRELDIATAKAAAVFTALKFKATDKGTTAASIFASESLPTQLGATIDAHWDSIGDTVPDDVVTAARAALDVDNTIDLALFGRMLAEIPVGGRIDGAVGVSHAFSVDPQAIEPDFFTAVDDAAPEGEAASGNLGVVQIAAPVLYRTAYLDRAQLRRNLAAAPDPERLAADAETAFIDWFIRAVPDSKQRSTVAATLPSLVVAVTGPQVLSAADAFADAVRSDNVVATATTRLVDAVTRHANFVPGITVERLARAADLPAAVADGAHTRSADFIAAVRAA
>NZ_CP046573.1|WP_159927728.1|34702_35218_-|hypothetical-protein
MHSPRDHKLGNRVAHRAKRLSALRRWEYPTVDRAVIAVTEGADEDDYLLYALAGKAFTIWHSGRSDVHYGKTGTGLGRAMRQLGRAGAYGPRDPRAERALATLLDADTPHRLAAALDSVMAAVSGVDHPPHWETLISDLRDWHNPTRRDQVRLRWGQQFYTAPPKPTEPTD
>NZ_CP046573.1|WP_159927730.1|37876_38152_+|hypothetical-protein
MAIEWAKSADKHGIDRDDALHAIENAVYVEQEFDEPRVPGHSKPWLFIGPPRTLGGPLLEVMVEIVPPRGMVVFHVMQARQKHLHRMTDQP
>NZ_CP046573.1|WP_159927732.1|38213_38528_+|ribbon-helix-helix-protein,-CopG-family
MNSNDKNSDYDELAEWAEHEMTLPKNSATAKRGAEAAAAGRELLERVGAGRPSLAGAGGESPKRQVRLPAPLSNKLDELAERQHRKPSELMREAVEEYIQRHSA
>NZ_CP046573.1|WP_159927734.1|40349_41423_-|group-II-intron-reverse-transcriptase/maturase
MRAVEIPKPHGGGTRVLGIPCVGDRVAQTMVALALEPRTESIFHDDSYGYRPERGALDAVAKCRERCWQKAWVIDLDVSKFFDSVDHDLMAKAVAANTTHEQRWIVLYVRRWMVAPILMPDGRLVERDRGTPQRSAVSPVLANLFMHYAFDMWLEREFPTVEFERYADDAVVHCATEHRAREVLAALEVRMAEVGLQLHPAKTKIVYCKDKNRRLECENTSFTFLGYTFRARKAQTRDGLRVFSAFLPAMGADALKAKSAEVKGWRIHLRTAKDLSELAGWMNPIIRGWMTYYGKFYRSEIYVLLRRINTYLVRWARRKFKRLRSFKRAERWWKGILRRQPRLFAHWDWMADFQWIR
>NZ_CP046573.1|WP_159927736.1|42078_42852_-|helix-turn-helix-domain-containing-protein
MSDQEFDRTTVLGKVMMVLHAFTIDDSTLSLAELARRTSIPKGTLHRILTDMVTVRMLDRTGAGYRLGGSLFELGMRASVERSLLEVAIPFMEDLYVRTHETVHLGVLDGTEVVYLSKIGGHRQASAPSRIGGRMPVHCTAIGKVLLAHADKTLREQVLSAPLARYTPRTIILPGPLRTQLDRITEEGMAYEYEESATGIVCVAAPVRDGEDVVAAISVTGPSHRFRPDTHATSVRAAADGIGLTLSRRTQLVADTR
>NZ_CP046573.1|WP_159927738.1|42997_43816_+|2-keto-4-pentenoate-hydratase
MSTPPGTSLPSTTDAVAAAAERLSTAAATSTPCAPVRDLIGADDVAAAYAVQERIVAGRIAAGASVVGRKIGLTSPAVQQQLGVDQPDFGVLFDDMYCQETTPIPLSRLLQPKVEAEIAFVLDHDLVDGPLDDAQIRAAVDYAVAALEIVDSRIAGWDITFGDTVADNGSSGLFVLGENRRTLDSVDPVAAQMQMSIDGTEVSTGTGAACLGDPLRALAWLARTAREFGQPLLAGQVILSGALGPMAVIDTAGTVRADITGLGSVTATFTQE
>NZ_CP046573.1|WP_159927740.1|43821_44805_+|acetaldehyde-dehydrogenase-(acetylating)
MSVNTRTVTVAVIGSGNIGTDLMIKVIRHSDVLQMGAMVGIDPDSDGLARARRLGVPTTAGGVQGLLQLPNFDEIDVIFDATSAKAHAANAALLEPLGKRLIDLTPAALGPFVVPAVNLDEHRDATNVNMVTCGGQATIPIVAAVSRVTPVAYAEIVASIASKSAGPGTRANIDEFTETTSHAIETVGGARRGKAIIILNPADPPLIMRDTVLCLISAPDPATHDAIRNSIQTMVDHVATYVPGYRLKQQVQITPVPDGQPVHTLLASGDTAAPTHQVTVFLEVEGAAHYLPAYAGNLDIMTSAAVRYAESVADTIAAPAATQGATR

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Crispr_ID: NZ_CP046573_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046573_4

747992-748096

Orphan

Consensus_repeat	Method
GGTGATGCACGGTGCATCACCGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046573_4

>merge|NZ_CP046573|4|747992-748096|CRISPRCasFinder
GGTGATGCACGGTGCATCACCGCAGCTTCCAGCGCGGACTTTTACGTTCGGTGTCACTACACGTGCGAGGAATCGCTTCTGGTGATGCACGGTGCATCACCCAGA

>NZ_CP046573|4|4|747992-748096|CRISPRCasFinder
GGTGATGCACGGTGCATCACCGCAG	CTTCCAGCGCGGACTTTTACGTTCGGTGTCACTACACGTGCGAGGAATCGCTTCT
GGTGATGCACGGTGCATCACCCAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046573.1\|WP_159928717.1\|762938_763310_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225320
NZ_CP046573.1\|WP_159928709.1\|751420_752140_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|317965
NZ_CP046573.1\|WP_159929130.1\|732092_732506_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133388
NZ_CP046573.1\|WP_159928695.1\|733755_734553_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159928713.1\|757060_757378_-\|integration-host-factor	unknown	unknown	gnl\|CDD\|215637
NZ_CP046573.1\|WP_109336097.1\|750848_751043_+\|50S-ribosomal-protein-L7ae	unknown	unknown	unknown
NZ_CP046573.1\|WP_159928697.1\|734552_736526_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236766
NZ_CP046573.1\|WP_005262432.1\|743390_743618_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159928707.1\|749918_750776_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224113
NZ_CP046573.1\|WP_159929134.1\|748451_749804_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|272946
NZ_CP046573.1\|WP_159929136.1\|760721_762581_+\|RNB-domain-containing-ribonuclease	unknown	unknown	gnl\|CDD\|366295
NZ_CP046573.1\|WP_159928705.1\|739488_739887_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159929132.1\|744346_745330_+\|replication-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_109335692.1\|752136_753057_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP046573.1\|WP_109335662.1\|737377_737605_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159928703.1\|739364_739589_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159928701.1\|737859_738804_+\|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein	unknown	unknown	gnl\|CDD\|197216
NZ_CP046573.1\|WP_159928715.1\|759138_759852_+\|DUF1524-domain-containing-protein	unknown	unknown	gnl\|CDD\|377857
NZ_CP046573.1\|WP_159928699.1\|736522_736867_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046573.1\|WP_159928711.1\|756649_756991_+\|Lsr2-family-protein	unknown	unknown	gnl\|CDD\|378714

Protein	Function_ID	Function_description	E-value
NZ_CP046573.1\|WP_159928717.1\|762938_763310_+\|hypothetical-protein	gnl\|CDD\|225320	COG2522, COG2522, Predicted transcriptional regulator [General function prediction only].	0.00448213
NZ_CP046573.1\|WP_159929130.1\|732092_732506_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133388	cd01282, HTH_MerR-like_sg3, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.87496e-32
NZ_CP046573.1\|WP_159928715.1\|759138_759852_+\|DUF1524-domain-containing-protein	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	6.39938e-36
NZ_CP046573.1\|WP_159928711.1\|756649_756991_+\|Lsr2-family-protein	gnl\|CDD\|378714	pfam11774, Lsr2, Lsr2. Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organisation and also function as a pleiotropic regulator of gene expression.	9.43669e-44
NZ_CP046573.1\|WP_159928697.1\|734552_736526_-\|hypothetical-protein	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	0.00633655
NZ_CP046573.1\|WP_159928707.1\|749918_750776_+\|AAA-family-ATPase	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	3.0543e-26
NZ_CP046573.1\|WP_159929134.1\|748451_749804_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|272946	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein. This model represents the most well-conserved core of a set of chromosomal and plasmid partition proteins related to ParB, including Spo0J, RepB, and SopB. Spo0J has been shown to bind a specific DNA sequence that, when introduced into a plasmid, can serve as partition site. Study of RepB, which has nicking-closing activity, suggests that it forms a transient protein-DNA covalent intermediate during the strand transfer reaction.	8.29286e-18
NZ_CP046573.1\|WP_159929136.1\|760721_762581_+\|RNB-domain-containing-ribonuclease	gnl\|CDD\|366295	pfam00773, RNB, RNB domain. This domain is the catalytic domain of ribonuclease II.	4.9739e-36
NZ_CP046573.1\|WP_159928701.1\|737859_738804_+\|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein	gnl\|CDD\|197216	cd09117, PLDc_Bfil_DEXD_like, Catalytic domain of type II restriction endonucleases BfiI and NgoFVII, and uncharacterized proteins with a DEAD domain. Catalytic domain of type II restriction endonucleases BfiI and NgoFVII, uncharacterized type III restriction endonuclease Res subunit, and uncharacterized DNA/RNA helicase superfamily II members. Proteins in this family are found mainly in prokaryotes. They contain one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in a single polypeptide chain, and have been classified as members of the phospholipase D (PLD, EC 3.1.4.4) superfamily. BfiI consists of two discrete domains with distinct functions: an N-terminal catalytic domain with non-specific nuclease activity and dimerization function that is more closely related to Nuc, an EDTA-resistant nuclease from the phospholipase D (PLD) superfamily; and a C-terminal domain that specifically recognizes its target sequences, 5'-ACTGGG-3'. BfiI forms a functionally active homodimer which has two DNA-binding surfaces located at the C-terminal domains but only one active site, located at the dimer interface between the two N-terminal catalytic domains that contain the two HKD motifs from both subunits. BfiI utilizes a single active site to cut both DNA strands, which represents a novel mechanism for the scission of double-stranded DNA. It uses a histidine residue from the HKD motif in one subunit as the nucleophile for the cleavage of the target phosphodiester bond in both of the anti-parallel DNA strands, while the symmetrically-related histidine residue from the HKD motif of the opposite subunit acts as the proton donor/acceptor during both strand-scission events.	2.24806e-10
NZ_CP046573.1\|WP_159928709.1\|751420_752140_-\|hypothetical-protein	gnl\|CDD\|317965	pfam15662, SPATA3, Spermatogenesis-associated protein 3 family. The SPATA3 family of proteins is expressed significantly in testis and faintly in epididymis in the ten tissues of testis, ovary, spleen, kidney, lung, heart, brain, epididymis, liver and skeletal muscle in mouse. Members are not expressed in the eight other tissues. This suggests that SPATA3 plays potential roles in spermatogenesis cell apoptosis or spermatogenesis.	0.000216798
NZ_CP046573.1\|WP_159928713.1\|757060_757378_-\|integration-host-factor	gnl\|CDD\|215637	PLN03223, PLN03223, Polycystin cation channel protein; Provisional.	0.00400936
NZ_CP046573.1\|WP_109335692.1\|752136_753057_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.00787e-26

>NZ_CP046573.1|WP_159929132.1|744346_745330_+|replication-protein
MLNSSTGREVCRRFRVSTEFVFAVAVTMASFAERSTGRRVCASRDKIAHRSGVSVSVVKRARRALQTFSVAREMVRGRYLTADESHAAESHHGRIQRRAASVWALTSPKSLVIAARRAVKSLSKTVRRSKEAARSRYPQLGVRGPLSPSRGFKFLSLVRELSPKRAQTRAGKHSRNPKTLAQQPRPIDLQRTAAELVSYAPAFESAGHIGAICDVLASVGVDVNRWRGRDIAAELTRDTQQRGWIWPERIERPVGYLRWRLTQIDWNRPSPSEMAQKAAQEARQRIADRDARLSRGDRPIAAPDHRQRCREAFASGLLKRRKADTGI
>NZ_CP046573.1|WP_005262432.1|743390_743618_+|hypothetical-protein
MTTRKSRGGRPARDVAVRHIGVEFPAEIADRILAPVDDGRVKTITDRMIALVQLALENEPAIPAQARQEELPMTG
>NZ_CP046573.1|WP_159928705.1|739488_739887_+|hypothetical-protein
MSPHRCERCSESSQESRGSRCPRSLSFRCWPICDRCTSPPISCLDLWKGSAPPVTVAASPHGPTTQTPPEADLDDGAPRCAALLESWEAGIAVTVGLALLTTLVCAVFGSLALGLLVLVAIAGIAGLIAAVL
>NZ_CP046573.1|WP_159928703.1|739364_739589_+|hypothetical-protein
MSVLLGALSIASFWVSGLGFILGVSAVVCGALAASRSGVADDEPASLRALLGVVAGVAGITVSAIALFPVLADL
>NZ_CP046573.1|WP_159928701.1|737859_738804_+|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein
MGTTFHGPSPWPHITRAIRTRGARYAAIGYLGQDAPELLPLRAGDLLVVNASKAAIRAHATSPAALTYYLNKGVRVLSSPTLHAKVIATSTRAVIGSANASENSTLADDAVIITDDPDIVAGVRQFIDGLDEITEVDQVFLDDAILEWEIGRAVPLPGVTGRVRTDTDFLPTPVRRMFVKHAVDYEPTDTEQQVLDTQRGRHNAAGGPVVKYQLDSLRLDTRGTIRRGDVIVFVSTGDEWIHPPAVVISDPMRIPRSGGAVLFFLRTRTDLPPAPLNDAEKTLTDLGHPGSRLRTDHYVRSPSLRTALLTLWGL
>NZ_CP046573.1|WP_109335662.1|737377_737605_-|hypothetical-protein
MSYEAIYDGVRYPLADAAAAHGLEDAVRGIFENNGNGGFVGFVSQNSTVRLLITPATPIAIRGSDEPNPSIVYRW
>NZ_CP046573.1|WP_159928699.1|736522_736867_-|hypothetical-protein
MAKTGNTGGGARRPTGGGRGGAARSGKRGPDEGGVSGSGTASAELAAKLEPRKGPTKVPLNTRVLASTEARLNWLVNHRQSTVTNVVDVALQEFFDRYRVPPADLDGRIAEQES
>NZ_CP046573.1|WP_159928697.1|734552_736526_-|hypothetical-protein
MSSPWEQIPLFALPDTTAATPPKSAAEKDGSPNATDQAGVTEESGPEPTVATHPDSHEPGNAEPDEQGDAESDEQVDVAETPTVAETPTSPESPDVDTADADSDVAGSGAVDPPAWEALPAGEAADGHALIVTAAGTYTPSGRELTGPVDSLEKLDKLIRWASLTPLGAPAQIWIVGLAACELLGWVIDPGSEDDVDDMEALRTRAASELTATLHATLPPLLGAGWELRGEPGHVVHLSRTIGNFTSMVDVVIEPYVWTYWNKDFGWHNRVGDMGVLGSPTAGTYLPDDDLPAARELGRRLAWCAQHLGVLPGPTPARTGAAIIDKIKRERTRSGKGIVVTTAGPVPPLDGAPRGDLEPAVGWTRVPEASDLADADRLVSIDQRAAYLASAGMLELGYGQPTHLTGGAAAAAAVGEKGTPFGLWRITLPAGQALSLPEKLPLPHPHMLADQPVQTWVTTVTLDALREPVADGGIGADLDDLDVTEAWVYPQQGRVLDKWAKILREARKTAVDTSDAAMKGFLGSCYKGYIGRMVNPDMWTATRMQHHHQPLWRASIIAHCRWRGRRVAMRIAREHHRWPVRTVTDSWVYLLPNGQDIADPSGALGKMTVEKDVALTDTLLASMASAADVHEVNLAIKAAFTDNEDTADDDDDGAGVD
>NZ_CP046573.1|WP_159928695.1|733755_734553_-|hypothetical-protein
MALHLPKPRTKKPAQQAVGLDGLKVSVANAATSGVEKSKQVKTGGLAGLTSKVTVKQLRTELGNEGLRQAAIDAGRTPPSDRTLRRWAQHGRIPHPDVLERAQRRAAIERLGGIDAVAAKIGRSRSAVSRYRSGETNELRADASKKLKTVRAEDIMKRAGVLRPDGTPKTAVIRVRGGVMVRNGADEGYDYRVRTLDFANSDTPFTPEESRELAAALANDDHARVVALLERHATLDYPENKGFDRYSDQFGFHFDHIDSVHIDWI
>NZ_CP046573.1|WP_159929130.1|732092_732506_-|MerR-family-transcriptional-regulator
MKVKATRRETVLIGEFAHRTGVSARALRHYEDQGLLEPVRDTNGYRHYAASDVTVVEQIQAMISAGLGTNMIRRYLDCARTGVHGTSLELCPDLRSELDRIAARLTQQQAAVAATRQRLAELTGTQLVTDERAGTLG
>NZ_CP046573.1|WP_159929134.1|748451_749804_+|ParB/RepB/Spo0J-family-partition-protein
MQVPVHQTVPHPFNDPGRSEPQVGDPKWDELVNGARANGIKVPGLLVTRKGFLAKRPDLANAIGDDAEYVVIYGHRRRAAAIAAGLATIPAVIDDAVMDDHGDLDAMTLENLGRQDLSEIAEAQMFARYSELGLSQRAIAEKLGVDQATVSRRLSLLLLVPEVQAAIAEDVIPSAEGAALAGALPYGPVRSWQKKADPAQGTDARRAEQLAAFALMSDREMSPTRAAERVLTERKSREQALAAGLEIVDPRERFGDSFHEHRLFEVSDLDLASANVVGAIDSSQGTLVFYAVDKPIGETEDASESAATLAAEARAAAQKARREAGKKLVASVPSREKLVTHFIDQYAYGVSALATSAEGWRLAQEYLRLEGLDATEFRMSARNGDEKRRIEIAWACAVAGYELAASNGSEEWGPSDLTYLDLLAERAGYRPTAWEEARIDAARRALRVAD
>NZ_CP046573.1|WP_159928707.1|749918_750776_+|AAA-family-ATPase
MATYAVATLSGSAGKTTTVTSTATLLAQDGYRVRVIDMDSQANASTWLGYPEASGKTAADVLRRQASIKEVERPARVLRGYDESDRPVYEEIPNLTIVPAARDTLDKLIVELPAVTGGVLHLRDALEEADPVDVTLIDSPGSLNVLVIAGILATMVDEESPYGSWGLITCTKPSGKENEGIPALEQELRKIKRTYRVDVPLLSIVPCAVPPIGDVYREQMEDLLSEYGDRVTPPIRRASIVDEAYTNYVPVPIYGYRAKTVTADYRAALTHMQKLGLFGQRAAVA
>NZ_CP046573.1|WP_109336097.1|750848_751043_+|50S-ribosomal-protein-L7ae
MPHDLHALVRAAVRLVRRKTGRSYSLMQFTQEAFAAQLRVIAETYNDGRAIEPDAEPLEPGKAV
>NZ_CP046573.1|WP_159928709.1|751420_752140_-|hypothetical-protein
MSARRRKAAFDPGALGDLDDLLPSLSIVTETPADSPDPQPATPQNSREDGPIQVDAEPTAEAPQPAPVPDEESPDTERVEPEPALPQPEAATLVAPPRRKAKPRSDTAPTRVAPPEVYLPPTVYTALRELTLNERQRDRATARAYGQVVLDAVEKHAHELQRHWTTEPVQTGGGLFKRRDVGTQPRRRRHSEIQARVPLAGIIASDTATLDALAEEWSAGSRSALVEQALRLYLDVRAD
>NZ_CP046573.1|WP_109335692.1|752136_753057_-|ParA-family-protein
MSPTQPPRSVLVANQKGGVGKSSIVSAVAGMVSAAGRRVLVVDADQQANVTSSDLGVEGDRGKGLSMALQYAHPLEPTRDVRPNLDLIPGGPALAVIGAIAATAAQSGMDLRGNLVSTLIDLQAAEQYDLILIDSGPGDAPLLDALLGTARYLLVPTKDDDASLSGVELLAARYLRARKSGSLIKLLGVVLFDANPRATARNREVFEQVEELLEGSGAAPFETFIRSDRAAAVDLRIRHITPSELVAVAEDPLKNRIQRLREKKNIAERLWSRDPSGLAKDYQSLTREVLSRLSAAEKDEVSGGVA
>NZ_CP046573.1|WP_159928711.1|756649_756991_+|Lsr2-family-protein
MARKIVVERLDDIDGTPIKNGKGETIAFSVNGVDYETDLKTKNAKEFHSTLNYYIEHATRVGGRKRRSTAAVAPSNGRKRAKDIREWATAQGYEVSSRGRIPAQLEDAYNAAH
>NZ_CP046573.1|WP_159928713.1|757060_757378_-|integration-host-factor
MALPVLTAEQRADALAKATEARKARSELLSAVKAGKLTVAAVLAKAETDEIVKKTKVSALLKALPGVGSVKAAKLLEELSIAETRRIGGLGANQRQALIEASTAS
>NZ_CP046573.1|WP_159928715.1|759138_759852_+|DUF1524-domain-containing-protein
MRRRPRSALLALGAVTALGLTGCSALADANPGTGSLGDAPAVPSVGFDAAPALAKLDTLAVKGRAPKTGYTREQFGPSWSDDNGVEGGHNGCDTRNDILRRDLVDLTYKTSTRDCVVATGTLHDPYTGTTIAFVRGQDTSTAVQIDHVVALSDAWQKGAQQLSPEQRRDLANDPRNLQAVDGPTNSKKSDSDTASWLPPNKSYRCTYVSRQIDVKALYRLWVTQAEKDAMSQVLHSC
>NZ_CP046573.1|WP_159929136.1|760721_762581_+|RNB-domain-containing-ribonuclease
MPLLMVDRSEALDRDDAFAVAELADGSGWKLEVHIAGVADVVPLGSAADATAFLRRESKYLSRRTVPMLGRDTEQAATLTEIAERSTLRVQAALSADGIVSGVSVDRGRVPAGRCVAVDHAQITEILGSVDDPLHKCVKAANDAAQVLLQGRRRSGAFALYDLTHGWRSTEEGGIAPIPSDVRTVGYVIVQEMMIAANEAIAMWCVREDLPVLFRNHRSAVTAGSTEDLAAEVAVAMTDPVLFEKLRSRLQSSFRAATYAPTVHGHHGLRLAAYTHATSPLRRVSDLITQRVIFAHLDSAPAPYTTEQLGNLAVDINRRIAADREEKAAHFKALDRKVTAQVVAAGELEGLDSKRWAKVLAAATARDPIGEVVTELRRRIKADEVTVTTIVTLLDASEGWTPIRSEVFDWASQSHPEFGPSVVSMWLQAHPDLPRPEIDSDHRGPSHTPVFAARLRVGDVCGPWATAGSKKRAEQDAAWGLTQAVAAGKSHPETDSPLRDEPHAVPPSATHAGIRARPAPASNGNPTSDCGQASKRRERAHKNPIAWVLSHAQHHGHPSPQWSVKMEGSAHAPVFTCEVQYRDHAAIGRGTTKTHAKTAAAEYLIDSLLDEASPAQSHP
>NZ_CP046573.1|WP_159928717.1|762938_763310_+|hypothetical-protein
MTSPDGHDLATRRRDARWVVRHLKFLADNYVDQALVMEALFRGLSQSEVAKLLGMSKKTVNTHARMPFMRNAALKDSRVDDLMRNDREFFAYVWGSDKAANSAVARCKQYDRERLLVESNRGV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP046573_1	1.1\|30576\|35\|NZ_CP046573\|CRISPRCasFinder	30576-30610	35	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	30576-30610	0	1.0
NZ_CP046573_1	1.2\|30636\|37\|NZ_CP046573\|CRISPRCasFinder	30636-30672	37	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	30636-30672	0	1.0
NZ_CP046573_2	2.1\|30879\|38\|NZ_CP046573\|CRT	30879-30916	38	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	30879-30916	0	1.0
NZ_CP046573_2	2.2\|30940\|38\|NZ_CP046573\|CRT	30940-30977	38	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	30940-30977	0	1.0
NZ_CP046573_2	2.3\|31001\|38\|NZ_CP046573\|CRT	31001-31038	38	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	31001-31038	0	1.0
NZ_CP046573_2	2.4\|31062\|38\|NZ_CP046573\|CRT	31062-31099	38	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	31062-31099	0	1.0
NZ_CP046573_2	2.5\|31000\|36\|NZ_CP046573\|CRISPRCasFinder	31000-31035	36	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	31000-31035	0	1.0
NZ_CP046573_2	2.6\|31061\|36\|NZ_CP046573\|CRISPRCasFinder	31061-31096	36	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	31061-31096	0	1.0
NZ_CP046573_3	3.1\|31451\|35\|NZ_CP046573\|PILER-CR	31451-31485	35	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	31451-31485	0	1.0
NZ_CP046573_3	3.2\|31512\|37\|NZ_CP046573\|PILER-CR	31512-31548	37	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	31512-31548	0	1.0
NZ_CP046573_3	3.3\|31575\|35\|NZ_CP046573\|PILER-CR	31575-31609	35	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	31575-31609	0	1.0
NZ_CP046573_3	3.4\|31636\|35\|NZ_CP046573\|PILER-CR	31636-31670	35	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	31636-31670	0	1.0
NZ_CP046573_3	3.5\|31697\|35\|NZ_CP046573\|PILER-CR	31697-31731	35	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	31697-31731	0	1.0
NZ_CP046573_3	3.6\|31450\|36\|NZ_CP046573\|CRISPRCasFinder	31450-31485	36	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	31450-31485	0	1.0
NZ_CP046573_3	3.7\|31511\|38\|NZ_CP046573\|CRISPRCasFinder	31511-31548	38	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	31511-31548	0	1.0
NZ_CP046573_3	3.8\|31574\|36\|NZ_CP046573\|CRISPRCasFinder	31574-31609	36	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	31574-31609	0	1.0
NZ_CP046573_3	3.9\|31635\|36\|NZ_CP046573\|CRISPRCasFinder	31635-31670	36	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	31635-31670	0	1.0
NZ_CP046573_3	3.10\|31696\|36\|NZ_CP046573\|CRISPRCasFinder	31696-31731	36	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	31696-31731	0	1.0
NZ_CP046573_4	4.1\|748017\|55\|NZ_CP046573\|CRISPRCasFinder	748017-748071	55	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	748017-748071	0	1.0
NZ_CP046573_3	3.1\|31451\|35\|NZ_CP046573\|PILER-CR	31451-31485	35	NC_012521	Rhodococcus opacus B4 plasmid pROB02, complete sequence	53680-53714	3	0.914
NZ_CP046573_3	3.1\|31451\|35\|NZ_CP046573\|PILER-CR	31451-31485	35	NC_008271	Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence	266774-266808	4	0.886
NZ_CP046573_3	3.6\|31450\|36\|NZ_CP046573\|CRISPRCasFinder	31450-31485	36	NC_012521	Rhodococcus opacus B4 plasmid pROB02, complete sequence	53680-53715	4	0.889
NZ_CP046573_3	3.6\|31450\|36\|NZ_CP046573\|CRISPRCasFinder	31450-31485	36	NC_008271	Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence	266773-266808	5	0.861
NZ_CP046573_1	1.1\|30576\|35\|NZ_CP046573\|CRISPRCasFinder	30576-30610	35	NC_012523	Rhodococcus opacus B4 plasmid pKNR, complete sequence	12253-12287	6	0.829
NZ_CP046573_3	3.4\|31636\|35\|NZ_CP046573\|PILER-CR	31636-31670	35	NZ_CP042916	Rhodococcus qingshengii strain RL1 plasmid unnamed1, complete sequence	53416-53450	7	0.8
NZ_CP046573_3	3.4\|31636\|35\|NZ_CP046573\|PILER-CR	31636-31670	35	NC_016907	Gordonia polyisoprenivorans VH2 plasmid p174, complete sequence	137272-137306	8	0.771
NZ_CP046573_3	3.4\|31636\|35\|NZ_CP046573\|PILER-CR	31636-31670	35	MF140397	Arthrobacter phage Abidatro, complete genome	29545-29579	8	0.771
NZ_CP046573_3	3.9\|31635\|36\|NZ_CP046573\|CRISPRCasFinder	31635-31670	36	NZ_CP042916	Rhodococcus qingshengii strain RL1 plasmid unnamed1, complete sequence	53416-53451	8	0.778
NZ_CP046573_3	3.9\|31635\|36\|NZ_CP046573\|CRISPRCasFinder	31635-31670	36	NC_016907	Gordonia polyisoprenivorans VH2 plasmid p174, complete sequence	137271-137306	9	0.75
NZ_CP046573_3	3.9\|31635\|36\|NZ_CP046573\|CRISPRCasFinder	31635-31670	36	MF140397	Arthrobacter phage Abidatro, complete genome	29545-29580	9	0.75

1. spacer 1.1|30576|35|NZ_CP046573|CRISPRCasFinder matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

tggatgattggcgtcctcgcccgcacccgggggga	CRISPR spacer
tggatgattggcgtcctcgcccgcacccgggggga	Protospacer
***********************************

2. spacer 1.2|30636|37|NZ_CP046573|CRISPRCasFinder matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

tttcgccagatccctcggcgtctacatcgaattcgga	CRISPR spacer
tttcgccagatccctcggcgtctacatcgaattcgga	Protospacer
*************************************

3. spacer 2.1|30879|38|NZ_CP046573|CRT matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

ttcgactcgattgatgtaagacagcaacgaacggagtt	CRISPR spacer
ttcgactcgattgatgtaagacagcaacgaacggagtt	Protospacer
**************************************

4. spacer 2.2|30940|38|NZ_CP046573|CRT matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

cggtccgaaccgagtccattgagtcacgaccaggagtc	CRISPR spacer
cggtccgaaccgagtccattgagtcacgaccaggagtc	Protospacer
**************************************

5. spacer 2.3|31001|38|NZ_CP046573|CRT matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

atcgtcatcatggtcggatcgggaaggtccgcggagtc	CRISPR spacer
atcgtcatcatggtcggatcgggaaggtccgcggagtc	Protospacer
**************************************

6. spacer 2.4|31062|38|NZ_CP046573|CRT matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

atcccactgactgctccgtggacggtaggggaggagtt	CRISPR spacer
atcccactgactgctccgtggacggtaggggaggagtt	Protospacer
**************************************

7. spacer 2.5|31000|36|NZ_CP046573|CRISPRCasFinder matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

tatcgtcatcatggtcggatcgggaaggtccgcgga	CRISPR spacer
tatcgtcatcatggtcggatcgggaaggtccgcgga	Protospacer
************************************

8. spacer 2.6|31061|36|NZ_CP046573|CRISPRCasFinder matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

tatcccactgactgctccgtggacggtaggggagga	CRISPR spacer
tatcccactgactgctccgtggacggtaggggagga	Protospacer
************************************

9. spacer 3.1|31451|35|NZ_CP046573|PILER-CR matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

gattggtggtcgcgacatgccgtgaggatgtaggg	CRISPR spacer
gattggtggtcgcgacatgccgtgaggatgtaggg	Protospacer
***********************************

10. spacer 3.2|31512|37|NZ_CP046573|PILER-CR matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

gtggcgggacgtactcgcccgagtcgtagtcccagga	CRISPR spacer
gtggcgggacgtactcgcccgagtcgtagtcccagga	Protospacer
*************************************

11. spacer 3.3|31575|35|NZ_CP046573|PILER-CR matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

gtttcccaggcatatccaagatgggttgaatcggg	CRISPR spacer
gtttcccaggcatatccaagatgggttgaatcggg	Protospacer
***********************************

12. spacer 3.4|31636|35|NZ_CP046573|PILER-CR matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

accccggcgatcgtctccggcgtgatcaccttcgg	CRISPR spacer
accccggcgatcgtctccggcgtgatcaccttcgg	Protospacer
***********************************

13. spacer 3.5|31697|35|NZ_CP046573|PILER-CR matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgcatcagatccgggcagcgctacggcttggg	CRISPR spacer
ccacgcatcagatccgggcagcgctacggcttggg	Protospacer
***********************************

14. spacer 3.6|31450|36|NZ_CP046573|CRISPRCasFinder matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

tgattggtggtcgcgacatgccgtgaggatgtaggg	CRISPR spacer
tgattggtggtcgcgacatgccgtgaggatgtaggg	Protospacer
************************************

15. spacer 3.7|31511|38|NZ_CP046573|CRISPRCasFinder matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

tgtggcgggacgtactcgcccgagtcgtagtcccagga	CRISPR spacer
tgtggcgggacgtactcgcccgagtcgtagtcccagga	Protospacer
**************************************

16. spacer 3.8|31574|36|NZ_CP046573|CRISPRCasFinder matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

agtttcccaggcatatccaagatgggttgaatcggg	CRISPR spacer
agtttcccaggcatatccaagatgggttgaatcggg	Protospacer
************************************

17. spacer 3.9|31635|36|NZ_CP046573|CRISPRCasFinder matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

taccccggcgatcgtctccggcgtgatcaccttcgg	CRISPR spacer
taccccggcgatcgtctccggcgtgatcaccttcgg	Protospacer
************************************

18. spacer 3.10|31696|36|NZ_CP046573|CRISPRCasFinder matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

tccacgcatcagatccgggcagcgctacggcttggg	CRISPR spacer
tccacgcatcagatccgggcagcgctacggcttggg	Protospacer
************************************

19. spacer 4.1|748017|55|NZ_CP046573|CRISPRCasFinder matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 0, identity: 1.0

cttccagcgcggacttttacgttcggtgtcactacacgtgcgaggaatcgcttct	CRISPR spacer
cttccagcgcggacttttacgttcggtgtcactacacgtgcgaggaatcgcttct	Protospacer
*******************************************************

20. spacer 3.1|31451|35|NZ_CP046573|PILER-CR matches to NC_012521 (Rhodococcus opacus B4 plasmid pROB02, complete sequence) position: , mismatch: 3, identity: 0.914

gattggtggtcgcgacatgccgtgaggatgtaggg	CRISPR spacer
gattggtggtcgcgccatgccgtgaggatgtagtt	Protospacer
************** ******************

21. spacer 3.1|31451|35|NZ_CP046573|PILER-CR matches to NC_008271 (Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence) position: , mismatch: 4, identity: 0.886

gattggtggtcgcgacatgccgtgaggatgtaggg	CRISPR spacer
gattggtgggcgcgccatgccgtgaggatgtagtt	Protospacer
********* **** ******************

22. spacer 3.6|31450|36|NZ_CP046573|CRISPRCasFinder matches to NC_012521 (Rhodococcus opacus B4 plasmid pROB02, complete sequence) position: , mismatch: 4, identity: 0.889

tgattggtggtcgcgacatgccgtgaggatgtaggg	CRISPR spacer
ggattggtggtcgcgccatgccgtgaggatgtagtt	Protospacer
 ************** ******************

23. spacer 3.6|31450|36|NZ_CP046573|CRISPRCasFinder matches to NC_008271 (Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence) position: , mismatch: 5, identity: 0.861

tgattggtggtcgcgacatgccgtgaggatgtaggg	CRISPR spacer
ggattggtgggcgcgccatgccgtgaggatgtagtt	Protospacer
 ********* **** ******************

24. spacer 1.1|30576|35|NZ_CP046573|CRISPRCasFinder matches to NC_012523 (Rhodococcus opacus B4 plasmid pKNR, complete sequence) position: , mismatch: 6, identity: 0.829

tggatgattggcgtcctcgcccgcacccgggggga	CRISPR spacer
gtgatgattggcgtcctcgcccgcacctggggttc	Protospacer
  *************************.****

25. spacer 3.4|31636|35|NZ_CP046573|PILER-CR matches to NZ_CP042916 (Rhodococcus qingshengii strain RL1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.8

accccggcgatcgtctccggcgtgatcaccttcgg	CRISPR spacer
actgcagcgatcgtttccggcgtgatgaccttctt	Protospacer
**. *.********.*********** ******

26. spacer 3.4|31636|35|NZ_CP046573|PILER-CR matches to NC_016907 (Gordonia polyisoprenivorans VH2 plasmid p174, complete sequence) position: , mismatch: 8, identity: 0.771

accccggcgatcgtctccggcgtgatcaccttcgg	CRISPR spacer
tccgcggcgatcgtcgccggcgtgatcaccacgcc	Protospacer
 ** *********** ************** .

27. spacer 3.4|31636|35|NZ_CP046573|PILER-CR matches to MF140397 (Arthrobacter phage Abidatro, complete genome) position: , mismatch: 8, identity: 0.771

accccggcgatcgtctccggcgtgatcaccttcgg--	CRISPR spacer
gccccggccatcgtccccggcgtgat--ccgccagcc	Protospacer
.******* ******.**********  ** .*.*

28. spacer 3.9|31635|36|NZ_CP046573|CRISPRCasFinder matches to NZ_CP042916 (Rhodococcus qingshengii strain RL1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.778

taccccggcgatcgtctccggcgtgatcaccttcgg	CRISPR spacer
gactgcagcgatcgtttccggcgtgatgaccttctt	Protospacer
 **. *.********.*********** ******

29. spacer 3.9|31635|36|NZ_CP046573|CRISPRCasFinder matches to NC_016907 (Gordonia polyisoprenivorans VH2 plasmid p174, complete sequence) position: , mismatch: 9, identity: 0.75

taccccggcgatcgtctccggcgtgatcaccttcgg	CRISPR spacer
ctccgcggcgatcgtcgccggcgtgatcaccacgcc	Protospacer
. ** *********** ************** .

30. spacer 3.9|31635|36|NZ_CP046573|CRISPRCasFinder matches to MF140397 (Arthrobacter phage Abidatro, complete genome) position: , mismatch: 9, identity: 0.75

taccccggcgatcgtctccggcgtgatcaccttcgg--	CRISPR spacer
cgccccggccatcgtccccggcgtgat--ccgccagcc	Protospacer
..******* ******.**********  ** .*.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

412952 : 483798

Mycobacterium_phage(44.44%)

transposase,integrase

attL 451580:451596|attR 485680:485696

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109336454.1\|412952_413252_+\|transposase	transposase	NA	NA	NA	NA
WP_159928254.1\|413248_414889_+	peptidoglycan DD-metalloendopeptidase family protein	Q9ZX60	Mycobacterium_phage	9.4e-30	44.6
WP_159928256.1\|414899_415478_+	hypothetical protein	NA	NA	NA	NA
WP_159928258.1\|415532_417341_+	TraM recognition domain-containing protein	NA	NA	NA	NA
WP_159928260.1\|417393_418146_+	hypothetical protein	NA	NA	NA	NA
WP_159928262.1\|418237_418675_+	hypothetical protein	NA	NA	NA	NA
WP_159928264.1\|418775_418973_+	hypothetical protein	NA	NA	NA	NA
WP_159928266.1\|418980_419787_+	cell filamentation protein Fic	NA	NA	NA	NA
WP_159928268.1\|419798_420020_-	hypothetical protein	NA	NA	NA	NA
WP_159928270.1\|420018_423084_+	DEAD/DEAH box helicase family protein	A0A2H4UTW8	Bodo_saltans_virus	1.3e-16	21.2
WP_159928272.1\|423208_427906_-	relaxase domain-containing protein	A0A2I6UFQ6	Klebsiella_phage	7.9e-05	31.3
WP_159928274.1\|428294_428777_+	hypothetical protein	NA	NA	NA	NA
WP_159928276.1\|429539_429719_+	hypothetical protein	NA	NA	NA	NA
WP_159928278.1\|429897_430899_-	DUF4192 family protein	NA	NA	NA	NA
WP_159928280.1\|431434_431962_-	hypothetical protein	NA	NA	NA	NA
WP_159928282.1\|432539_432965_+	hypothetical protein	NA	NA	NA	NA
WP_159928284.1\|433238_433742_+	hypothetical protein	NA	NA	NA	NA
WP_159928286.1\|433750_434476_-	hypothetical protein	NA	NA	NA	NA
WP_159928288.1\|434625_434862_-	hypothetical protein	NA	NA	NA	NA
WP_159929101.1\|435006_436329_+	hypothetical protein	NA	NA	NA	NA
WP_159928290.1\|436583_436988_-	Lsr2 family protein	NA	NA	NA	NA
WP_159928292.1\|437442_437775_-	hypothetical protein	NA	NA	NA	NA
WP_159928294.1\|437914_438217_-	hypothetical protein	NA	NA	NA	NA
WP_159928296.1\|438206_438365_-	hypothetical protein	NA	NA	NA	NA
WP_159928298.1\|438492_438681_-	hypothetical protein	NA	NA	NA	NA
WP_159928300.1\|438677_439232_-	DNA helicase	NA	NA	NA	NA
WP_159929103.1\|439289_439523_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	8.3e-17	57.9
WP_159928302.1\|440014_440467_-	hypothetical protein	NA	NA	NA	NA
WP_159927971.1\|440651_441254_-	hypothetical protein	NA	NA	NA	NA
WP_159927973.1\|441250_443887_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_159929043.1\|443868_445050_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_159928304.1\|445231_445708_-	hypothetical protein	NA	NA	NA	NA
WP_159928306.1\|447734_448796_+	hypothetical protein	NA	NA	NA	NA
WP_159928308.1\|448798_450898_+	hypothetical protein	NA	NA	NA	NA
451580:451596	attL	NA	NA	NA	NA
WP_159928310.1\|451914_452358_-	hypothetical protein	NA	NA	NA	NA
WP_159928312.1\|453959_454526_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-45	53.7
WP_159928314.1\|454765_455131_+	hypothetical protein	NA	NA	NA	NA
WP_159928316.1\|455150_455396_+	hypothetical protein	NA	NA	NA	NA
WP_159928318.1\|455349_455850_+	RES domain-containing protein	NA	NA	NA	NA
WP_159928320.1\|456541_456727_-	hypothetical protein	NA	NA	NA	NA
WP_159928322.1\|457291_460009_+	N-6 DNA methylase	Q6NE04	Leptospira_phage	7.7e-138	34.9
WP_159928324.1\|460005_461991_+	ATP-dependent helicase	NA	NA	NA	NA
WP_159928326.1\|461987_463181_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_159928328.1\|464970_466029_-	hypothetical protein	NA	NA	NA	NA
WP_159928330.1\|466553_466850_-	hypothetical protein	NA	NA	NA	NA
WP_159928332.1\|466935_467088_-	hypothetical protein	NA	NA	NA	NA
WP_159928334.1\|467138_467327_-	hypothetical protein	NA	NA	NA	NA
WP_159928336.1\|467323_467878_-	DNA helicase	NA	NA	NA	NA
WP_159928338.1\|468557_470162_-	ParB N-terminal domain-containing protein	A0A2P1N496	Mycobacterium_phage	2.8e-55	34.9
WP_159928340.1\|470250_470688_-	hypothetical protein	NA	NA	NA	NA
WP_159928342.1\|470722_470944_-	hypothetical protein	NA	NA	NA	NA
WP_159928344.1\|471727_472384_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_159928346.1\|472486_472840_-	hypothetical protein	NA	NA	NA	NA
WP_159923567.1\|473543_474857_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	3.5e-205	82.8
WP_159928348.1\|476115_476433_+	hypothetical protein	NA	NA	NA	NA
WP_159928350.1\|476860_477691_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_159928352.1\|478113_479310_-	hypothetical protein	NA	NA	NA	NA
WP_159928354.1\|479972_480308_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_159929104.1\|480304_480802_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_159928356.1\|480786_483798_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.9e-132	32.2
485680:485696	attR	NA	NA	NA	NA

DBSCAN-SWA_2

490190 : 537567

Enterobacteria_phage(33.33%)

transposase,integrase

attL 486277:486293|attR 540516:540532

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
486277:486293	attL	NA	NA	NA	NA
WP_159928360.1\|490190_491147_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_159928362.1\|491164_491995_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_159928364.1\|492199_492970_+\|transposase	TnsA-like heteromeric transposase endonuclease subunit	NA	NA	NA	NA
WP_159928366.1\|492966_495036_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_159928368.1\|495026_496070_+	AAA family ATPase	NA	NA	NA	NA
WP_159928370.1\|496120_496945_+	hypothetical protein	NA	NA	NA	NA
WP_159928372.1\|497605_497941_-	Lsr2 family protein	A0A160DF84	Gordonia_phage	3.6e-21	50.0
WP_054806356.1\|498782_499073_-	hypothetical protein	NA	NA	NA	NA
WP_159928374.1\|499401_500628_+	GAF domain-containing protein	NA	NA	NA	NA
WP_159928376.1\|501209_502709_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_159928378.1\|502705_503494_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.2e-32	34.3
WP_050993454.1\|503993_504848_-	alpha/beta fold hydrolase	W0LK50	Mycobacterium_phage	1.1e-08	27.6
WP_159928380.1\|504888_506121_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_037216443.1\|506208_506505_-	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_159928382.1\|506573_506963_-	hypothetical protein	NA	NA	NA	NA
WP_019288893.1\|507003_507297_-	hypothetical protein	NA	NA	NA	NA
WP_054713360.1\|507296_507824_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA
WP_019288891.1\|507867_509217_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_054805881.1\|509681_510569_-	glyoxalase	NA	NA	NA	NA
WP_019288888.1\|510598_511414_-	3-(cis-5,6-dihydroxycyclohexa-1, 3-dien-1-yl)propanoate dehydrogenase	F2NZ40	Diadromus_pulchellus_ascovirus	5.7e-12	34.5
WP_054805882.1\|512305_512686_-\|transposase	transposase	NA	NA	NA	NA
WP_159928384.1\|513541_513940_+	peptidase C56	NA	NA	NA	NA
WP_159928386.1\|514358_517385_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	1.0e-175	38.4
WP_159929105.1\|517402_518035_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_159928388.1\|518465_518891_-	hypothetical protein	NA	NA	NA	NA
WP_159928390.1\|519210_522186_-	DEAD/DEAH box helicase family protein	A0A2H4UTW8	Bodo_saltans_virus	9.4e-28	20.3
WP_159928392.1\|522805_523294_+	hypothetical protein	NA	NA	NA	NA
WP_159928394.1\|523416_524085_-	ANTAR domain-containing protein	NA	NA	NA	NA
WP_159928396.1\|525017_526160_+\|integrase	tyrosine-type recombinase/integrase	A0A1U9WS15	Gordonia_phage	8.0e-12	26.7
WP_159928397.1\|526156_528619_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_159928399.1\|528611_529259_+	hypothetical protein	NA	NA	NA	NA
WP_159928401.1\|529318_530296_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.9e-34	48.6
WP_159928403.1\|530693_531278_+	helix-turn-helix domain-containing protein	A0A219YB42	Aeromonas_phage	6.3e-05	41.0
WP_159928405.1\|531313_531607_-	hypothetical protein	NA	NA	NA	NA
WP_159928407.1\|532501_532948_-	hypothetical protein	NA	NA	NA	NA
WP_159928409.1\|533008_533488_-	AsnC family protein	NA	NA	NA	NA
WP_159928411.1\|534063_535485_+	hypothetical protein	NA	NA	NA	NA
WP_159928413.1\|535489_535645_-	hypothetical protein	NA	NA	NA	NA
WP_159928415.1\|536454_537567_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
540516:540532	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP046572

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046572_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046572_1

49130-49237

Orphan

Consensus_repeat	Method
CGGTGACGCCGGGCTGTGACGTCG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP046572_1

>merge|NZ_CP046572|1|49130-49237|CRISPRCasFinder
CGGTGACGCCGGGCTGTGACGTCGTGGGCGGGCCGGCCGGATTCGCCACTCCCGGCTGGGAAGTGGTGGGTGGCGTCGACCGGTCGGTGACGCCGGGCTGTGACGTCG

>NZ_CP046572|1|1|49130-49237|CRISPRCasFinder
CGGTGACGCCGGGCTGTGACGTCG	TGGGCGGGCCGGCCGGATTCGCCACTCCCGGCTGGGAAGTGGTGGGTGGCGTCGACCGGT
CGGTGACGCCGGGCTGTGACGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046572.1\|WP_159918470.1\|41817_43107_-\|DUF3662-domain-containing-protein	unknown	unknown	gnl\|CDD\|378850
NZ_CP046572.1\|WP_159918471.1\|44157_44838_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|197666
NZ_CP046572.1\|WP_159918481.1\|58759_59194_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP046572.1\|WP_159926760.1\|57811_58726_+\|cutinase-family-protein	unknown	unknown	gnl\|CDD\|366455
NZ_CP046572.1\|WP_159918468.1\|39603_41055_-\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|223704
NZ_CP046572.1\|WP_159918478.1\|50729_51278_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380066
NZ_CP046572.1\|WP_159918469.1\|41051_41516_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|224630
NZ_CP046572.1\|WP_159918472.1\|44824_45226_-\|glyoxalase	unknown	unknown	gnl\|CDD\|319901
NZ_CP046572.1\|WP_159926758.1\|46892_47645_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274798
NZ_CP046572.1\|WP_159918474.1\|45787_46162_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP046572.1\|WP_159918473.1\|45335_45731_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176874
NZ_CP046572.1\|WP_159918475.1\|46158_46767_+\|ATPase	unknown	unknown	gnl\|CDD\|176908
NZ_CP046572.1\|WP_159918477.1\|49651_50674_-\|NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|168661
NZ_CP046572.1\|WP_109325438.1\|60767_61061_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP046572.1\|WP_159918483.1\|61071_61770_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|366780
NZ_CP046572.1\|WP_159918479.1\|51584_56183_+\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NZ_CP046572.1\|WP_109325434.1\|60208_60706_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046572.1\|WP_159918476.1\|47683_48406_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046572.1\|WP_159918482.1\|59268_60177_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235628
NZ_CP046572.1\|WP_159918480.1\|56175_57627_+\|glutamate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237213

Protein	Function_ID	Function_description	E-value
NZ_CP046572.1\|WP_159918470.1\|41817_43107_-\|DUF3662-domain-containing-protein	gnl\|CDD\|378850	pfam12401, DUF3662, Protein of unknown function (DUF2662). This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with pfam00498.	3.82491e-48
NZ_CP046572.1\|WP_159918471.1\|44157_44838_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	1.68442e-15
NZ_CP046572.1\|WP_159918481.1\|58759_59194_+\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	4.43887e-22
NZ_CP046572.1\|WP_159926760.1\|57811_58726_+\|cutinase-family-protein	gnl\|CDD\|366455	pfam01083, Cutinase, Cutinase.	1.51701e-11
NZ_CP046572.1\|WP_159918468.1\|39603_41055_-\|serine/threonine-protein-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	1.51692e-80
NZ_CP046572.1\|WP_159918478.1\|50729_51278_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|380066	pfam17940, TetR_C_31, Tetracyclin repressor-like, C-terminal domain. This is the C-terminal domain found in putative transcriptional regulator, TetR family proteins.	3.97628e-12
NZ_CP046572.1\|WP_159918469.1\|41051_41516_-\|FHA-domain-containing-protein	gnl\|CDD\|224630	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms].	7.93956e-24
NZ_CP046572.1\|WP_159918472.1\|44824_45226_-\|glyoxalase	gnl\|CDD\|319901	cd07235, MRD, Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.	8.34764e-56
NZ_CP046572.1\|WP_159926758.1\|46892_47645_-\|hypothetical-protein	gnl\|CDD\|274798	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see ). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.	0.0013895
NZ_CP046572.1\|WP_159918474.1\|45787_46162_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.0547e-18
NZ_CP046572.1\|WP_159918473.1\|45335_45731_+\|SRPBCC-family-protein	gnl\|CDD\|176874	cd08865, SRPBCC_10, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	4.26083e-05
NZ_CP046572.1\|WP_159918475.1\|46158_46767_+\|ATPase	gnl\|CDD\|176908	cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	3.06895e-31
NZ_CP046572.1\|WP_159918477.1\|49651_50674_-\|NAD(P)-binding-protein	gnl\|CDD\|168661	PRK06753, PRK06753, hypothetical protein; Provisional.	3.908e-57
NZ_CP046572.1\|WP_109325438.1\|60767_61061_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	2.57163e-30
NZ_CP046572.1\|WP_159918483.1\|61071_61770_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|366780	pfam01738, DLH, Dienelactone hydrolase family.	7.00707e-51
NZ_CP046572.1\|WP_159918479.1\|51584_56183_+\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NZ_CP046572.1\|WP_159918482.1\|59268_60177_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235628	PRK05855, PRK05855, SDR family oxidoreductase.	1.287e-140
NZ_CP046572.1\|WP_159918480.1\|56175_57627_+\|glutamate-synthase-small-subunit	gnl\|CDD\|237213	PRK12810, gltD, glutamate synthase subunit beta; Reviewed.	0

>NZ_CP046572.1|WP_159918476.1|47683_48406_-|hypothetical-protein
MTEPPRRNDDSATRDRFAHWFPPFTPTPASTRAASASAAESTEEARDSQPELPPPVPTWLAPSDHHDTTPVVRGGRGKQRLALVGAAAALGAVIVGVVIVSSFGSSNETGSPVAAVDADWCVESRNDGAVTGNGPGGTADGTEVILAFDHAYYVERSGAKARDVVTADAPMGSAETIQRGIDSLPEGTEHCLTISPIEPGRYAVTLTEQRPDGSTHQYRQVVTTTDRDGRTYITSIGDAQ
>NZ_CP046572.1|WP_159926758.1|46892_47645_-|hypothetical-protein
MLGACGGAGATTTALGLANTAAVHGTTAVAVDATPAGGDIAERGADAVLSVSGLEHVVTVAASGAVPDDVFDGYCSRTTVDARILNRLGTQTATDSEMFLLAEALRARGASSVYDLGHRLRASYLSPLLAAPTPIILVVPCRADAFNRLRAALQSIGDTLGEPGLSRTVVTVSNQDNTGWQVDVDLLRDYLGGQVWGVETIPYDEHLGMGVVISHDQLAADTRAAYERLLDIASALADGRREPVPAPVSE
>NZ_CP046572.1|WP_159918475.1|46158_46767_+|ATPase
MNEIASQDTSLTAVKRAMGNREIAEGPARTAVLERRYEAPIKDVWDAITTPDRVNRFFLPVSGDLRAGGSYAFEGQASGKILVCDPPHLLRLEWTPPGDRGYSDQVEVRLTSDGPDATWLVLEHASVADVFRNDPDTGCYGVGTGWEGPLHYLGEYLRGVLPDRPSTEWYTFDEAEELRLANHRGREWAKIEAQHAGGSDNG
>NZ_CP046572.1|WP_159918474.1|45787_46162_+|metalloregulator-ArsR/SmtB-family-transcription-factor
MHAFDVLGDPVRRRILELLAEGECSAGQVTEVAAAEFGISQPTVSGHLRVLRENGFATVRREGTRRLYAVQPAPLQEIDQWLEGFRRFWTGPLDALATELARGRRERRTSRPSHPDSSNEGDRQ
>NZ_CP046572.1|WP_159918473.1|45335_45731_+|SRPBCC-family-protein
MTRESTHVSVFIARSAADVYAYASDPANLPAWAAGLSSSIAREGDHWVADSPMGQVFVAFAPPNDFGVLDHHVTLPGGDTVYNPVRVIPDGEHSEVVFTLRRREGMGVDEFTADAAAVTADLQRLKGLLER
>NZ_CP046572.1|WP_159918472.1|44824_45226_-|glyoxalase
MTIPTFAAIELVVHDLAASLAFYRRIGLDIPAGSEEAPHVEFELPGGIRLLWDTVETVRSFEPDWTTPQGGHRVALGFDCESPDVVDKVFTDLTDAGYRERHAPWDAPWGQRYATIDDPDGNPVDLFAPLTTT
>NZ_CP046572.1|WP_159918471.1|44157_44838_+|helix-turn-helix-domain-containing-protein
MYSERSSTFAGAVVWEKTAAGGDGVILPDGCMDLIWMNGDVVVAGPDSRPYIARTRPGDHLVGLRCAPGTLPALLGTPAEALANARVPLADVLYDDDTARLLSSIAEHGDPATQLEKFAARRRLIARPDRRIAVTVSLLARQCPVREVADRVGMSERQLHRLCRREFGYGPKVLARILRLQRARELVGSMSAAEAASLAGFADQAHLIRESNELTGRSFGRLVTSS
>NZ_CP046572.1|WP_159918470.1|41817_43107_-|DUF3662-domain-containing-protein
MGIVQRFERKLQGAVGDAFARVFGGGVVPQEVEAALQQEAADRIQELEGGHLLAPNSYVIAINNSDHEGLAADRDLTVKAFSRHLEDFIRDQGWQTYGPIHVAFEPSPSLHTGQFRTRGSVDPDAGRPGATPPGRPEPPRGPAPRPQAPFVPVTSNPGAGPMTQNSGYDPSREPAGNRKPDPQYARNGHAHAGQDQGYPPGYQNGYDRGGYPQAGYDQQQPYPEAPRGGYPQDQQAYGQAYEQAPQAPGYEQPADDGYDYREAGYAQDYRGGYDQGAPARYPDGTYAEAGYQQPQAYDRGGYQQGGYDQQAYDQGYSDYDQGGYNQQAYPPEGHTYTATLQLEDGSGRHFQLREGNNIIGRGQEAQFRLPDTGVSRRHIDIRWDGQVAMLSDLGSTNGTTVNGAPVQDWQLADGDIIRAGHSEILVRIL
>NZ_CP046572.1|WP_159918469.1|41051_41516_-|FHA-domain-containing-protein
MQGLILQLTRAGFLLLLWLFVWSVLRALRGDIYAGSGVRVPPRYSRTGNVLPSLGKTKSAKYLVVTQGGLAGTRITLGTQPVLIGRADDSTLVLTDDYASTRHARLSPRGADWYVEDLGSTNGTYLDRAKVTTSVRVPLGTPVRVGKTVIELRP
>NZ_CP046572.1|WP_159918468.1|39603_41055_-|serine/threonine-protein-phosphatase
MTLVLRYAARSDRGLVRSNNEDSVYAGARLLALADGMGGHAAGEVASQLMIAALAHLDDDEPGEDLLGKLEAATREGNDSIADHVEEDPELDGMGTTLTAILFSGSKLGLVHIGDSRAYLLRDNTLTQITRDDTFVQSLVDEGRITAEQAHTHPQRSLIMRALTGNEIEPTLTVREARAGDRYLLCSDGLSDVVSDETIENTMREGSQDECADRLIELALRSGGPDNVTVVVADVIDLDYGQSHPIVAGAASADDDDDAPPPNTAAGRAAAMRPPRATPKRVVPQVEEAPTKKTRHRMWWAALALGLIVVVAVAAFVGRALIRNNYYVGADGERVTVLRGVPGSVLGYSLQEANLVGCVTDTGSLTLMSPTDSPNGCTILQVDDLQPSAREQVRAGLPSGKLDDVRNQMARLADNDLLPVCESQPATTTTSPVPVPSPTPEPPPAPTPAPPAATPETAVPPTPTPTPTPTTTQVPGQNCRTAS
>NZ_CP046572.1|WP_159918477.1|49651_50674_-|NAD(P)-binding-protein
MTHSAAVLGGGIGGLAIARFLFRAGWHVDVFERSADLPTSGTALGMWPQAVDALDTIGLGDRVRALGSPQHRGSFLRPDGSVIGTVDSTARTAYLLSRPALLAELATSLPEGMVSFGTPAPPADALSDYDVVIGADGLRSATRRRLFGDGFEPVYTGATAWRGWVPGRRDTVSETWDAGALFGITPREGNLVNWFACVRTDPGSEDGLDYLRWRFGGWHADVRAVLDAITPDALLHHDLYESPALPSYVSGHTALIGDAAHAMAPNLGRGACEALVDAVTLGRFLASQNDIRDSLRKYDRARRRVTQRLVLGSRAMASIAMTRHLRPVRDRTMKLAAALA
>NZ_CP046572.1|WP_159918478.1|50729_51278_+|TetR-family-transcriptional-regulator
MTGRREQLLDAAIDVLGRKGVRALTHRAVDESAGMPQGSTSNYFRTRGALLEGMVTRLAARDVDDWEKFADLRPDGMEALVEALAAFTRYAAGPDRIRSSARYALFVEASAVPALGEIIGSARAGLVEWGASMLDLAGSRNPAADAVVVTDYLDGVILHQLTVPDPDFDPTPGITAVLGALT
>NZ_CP046572.1|WP_159918479.1|51584_56183_+|glutamate-synthase-large-subunit
MKQLPGPQGLYHPANEHDSCGVAFVVDMKGRRSRDIVEKAITALVNLEHRGAAGSEPNTGDGAGILIQVPDAFFRAVVDFPLPAAGTYATGIAFLPQSKADAQRASDAVEKIVEAEGLKVLGWREVATDDSSLGALARDAMPTFRQIFIGSEGDSLTGLDLERRAYVVRKRTEHELGSEGAGKDGPGRETVYFPSLSSQTFVYKGMLTTPQLKGFYLDLQDERVESALGLVHSRFSTNTFPSWPLAHPFRRVAHNGEINTVTGNENWMRAREALIDSDVFGGRENLEKIFPVCTNGASDTARFDEVLEMLHLGGRSLPHAVLMMIPEAWEHHESMDPARRAFYQYHSTLMEPWDGPASVCFTDGTVIGAVLDRNGLRPSRLWVTEDGLVVMASEVGVLPIDPATVVKKIRLQPGRMFLVDTDQGRIISDDEIKSELAAEHPYQEWLDQGLTHMDDLPERPYTYMSHERVVLRQQMFGFTNEEVNVLVKPMAASGAEALGSMGTDTPIAVLSSRSRMLFDYFSQLFAQVTNPPLDAIREEVVTSLGGTIGPEHDLLHPTAESCRQIYLPQPILHNDDLSKLIHVNDDGGFPSFRSVIVRGLYPVAEGGAGLRKALDDVRYQVSEAIAGGARIIVLSDRESNETYAPIPSLLLTSAVHHHLVREKTRTKVGLVVESGDAREVHHMALLIGFGAAAVNPYMAFETVDELFRGNELQGLSLDKAIQNYIKAAGKGVLKVMSKMGISTLASYTGAQLFQVIGLSQDLVDEYFTGLNSSLGGIGLDEIAADVAVRHSNAYLDRPEERAHRELEVGGEYQWRREGEYHLFNPDTVFKLQHSTRTGQYEVFKEYTKLVDDQSERLAALRGLFEFKKGVREPVPLDEVEPATEIVKRFSTGAMSYGSISAEAHETLAIAMNRLGGRSNSGEGGEHPSRFEPDENGDWRRSAIKQVASGRFGVTSHYLTNCSDIQIKMAQGAKPGEGGQLPAHKVYPWVAEVRHSTPGVGLISPPPHHDIYSIEDLAQLIHDLKNANPQARVHVKLVSEVGVGTVAAGVSKAHADVVLISGHDGGTGATPLTSVKHAGAPWELGLAETQQTLLLNGLRDRIVVQVDGQLKTGRDVMVAALLGGEEFGFATAPLVVSGCIMMRVCHLDTCPVGVATQNPVLRKRFNGKPEFVENFFLFIAEEVRELMAELGFRTLDEAVGQVGVLDTTKALEHWKGSKAGNLDLSPILHQAESAFMDQDLYCTGTQDHGLDKALDQQLIAQSRDALDKGAKVSFESPITNVNRTVGTMLGHEVTKAYGGEGLPDNTIDITFTGSAGNSFGAFVPKGMTLRLHGDANDFVGKGLSGGRIVVRPPLETAAGFVAEDNIIGGNVILFGATSGEALLRGVVGERFAVRNSGATAVVEGVGDHGCEYMTGGKVVILGATGRNFGAGMSGGVAYVFNPDKAFEDNLNTELVDLEDLTGDDFTWLKAAIERHRDETGSEVAARILSDWSQQVNHFAKVMPRDYKKVLLAIEAAKKDGKNVDEAVMEAARG
>NZ_CP046572.1|WP_159918480.1|56175_57627_+|glutamate-synthase-small-subunit
MADPSGFLKHPSRELPVRRPVPLRLLDWNEVYEEFPKENLRTQASRCMDCGIPFCHNGCPLGNLIPEWNDLVYRDRWHDGIERLHATNNFPEFTGRLCPAPCEASCVLGINQDPVTIKQVEVEIIDRAFDEGWVTPVHPTRSTGKRVAVVGSGPAGLAAAQQLTRAGHLVTVFERADRIGGLLRYGIPEFKMEKRHIDRRLDQMEAEGTVFKTNVNVGVDISADELREQFDAVVLAGGATAARDLPIPGRELDGIHQAMEYLPIANRVQLGDLEEPTITAEGKKVVIIGGGDTGADCLGTSHRQGAVSVHQFEIMPRPPETRAEQTPWPTYPLMYRVASAHEEGGERLFSVNTEKFVGVDGKVTALHAHEVEMKSGRFEKVEGSDFELEADLVLLAMGFVGPEKPGLLTDLGVDLNERGNVARSAKWATNVDGVFVAGDMGRGQSLIVWAIAEGRSAAAAVDAYLEGETALPSPVETTSAPQR
>NZ_CP046572.1|WP_159926760.1|57811_58726_+|cutinase-family-protein
MKRVIATLTATAAAVAIPVVSGVVGTSAVANADPCPSLYVVAIPGTWETSTKENVRPTPGLLSAVTNGLPSNIRTDYVTYAATAFPWEGDVYGRSKAQAVDNARGMLVNMSQQCAGTKLALIGYSQGADAAGDLAAEIGTGLGAVPADKIAAVGLVSDPRRSPTDALVGPPVAGGGAGGPRIGGFGWVSQNTRTFCAYGDLYCSTPKEDFVTRLAGFLAQTSDPSPSLLGRYQAEAEAIWRDLLDAGGVPTLMAQLDEQANQRRIDELEQFYKSQAHQDYTRYAVDGAGTSATNWLRNWLRDVA
>NZ_CP046572.1|WP_159918481.1|58759_59194_+|acyl-CoA-thioesterase
MTDTPAAPGYDAFVTVRWSDMDAFQHINHARMVTLLEEARIDWLLSEGAENSSLITSAFIADIHVKYRAQLTHSDSPLRITMWIAKHRAVDFTIGYEVRGARAGRSDPPAVTATTQMAVADVDAQRLRRITPTEREYLTRWSRA
>NZ_CP046572.1|WP_159918482.1|59268_60177_-|SDR-family-NAD(P)-dependent-oxidoreductase
MSLLSEVKGWRTGSRKHRRLRDLDGMLVVVTGGGSGIGRETALAFAAEGAVVVVGDLDLESAQHTADLINSAQMKGGGAVAIFGGGSHAYRVNVAVEEEVRRFAEEVQSQHGTPDVVVNNAGIGYSGTFTATPQSEFERVMDVNFWGVVYGCRVFAEQMIERGTGGHIVNLSSAAAFTPQKRLTAYATSKAAVYMLSDCLRAELVDHGIGVSTICPGIVHTNIVKNTDFAGTTPEKQEQMRSRSDTFYRKRGFTPDRVATQILKAVRSNRAVVPVTPEAKFGRALSRLAPGSMRLGARFDLG
>NZ_CP046572.1|WP_109325434.1|60208_60706_+|hypothetical-protein
MLIWYVSYGSNMATTRLACYLRGGCPPGGNHSHRGARDTSEPRESIPVVIPGSVFFAGESRIWGGGRAFYDPDAPGTVAARAFLVTQEQFEDIHAQEPACYDRLVPLGTRDGIVMCTFTTRARGDVVTRNAPAPAYLATIADGLREGHGWDDPRVEDYLTRLRVS
>NZ_CP046572.1|WP_109325438.1|60767_61061_+|antibiotic-biosynthesis-monooxygenase
MSDLHVVATIPAKPGSEDTVRDGLSSLAAESRKEEGCVSYELFESAAQPGTFVTVEVWANQEAVDAHMKSPHFQSAVAVFGEHLAGAPAIHPLKPVS
>NZ_CP046572.1|WP_159918483.1|61071_61770_+|dienelactone-hydrolase-family-protein
MTTPLTSVVPEGRSRGGVIVIQEAFGITQHIVDVCSRFADAGYHAVAPHLFHRAGDPVLGYDDLKTAMPLLGTLTSAQIDEDVDAAVAALADAGIDAGNTAIVGFCMGGTVAFHTAARRKLGAAVSFYGGGVEKGRFGYPSQLEAAGQLSTPWLGLFGDRDTGIPSEQVEELRNALSQVPVDTEIVRYPDAEHGFNCNDRPAVYNEAAARDAWSRTVDWLGTHLQVSSGGIG

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Crispr_ID: NZ_CP046572_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046572_2

5853376-5853536

Orphan

Consensus_repeat	Method
CTCGGCGGCGCCGACCTGCGGGGCGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP046572_2

>merge|NZ_CP046572|2|5853376-5853536|PILER-CR
CTCGGCGGCGCCGATCTGCGGGACCTCGACTTCACCGACTGCCGGTTCCGTGAGGCCAACCTCGTGCGAACCGACCTGCGGGGCGCGGTTCTGCGTGCGGCCGACCTCCTCGGTGCCCGCACCGGGGGCGCGAAACTGGGCGGCGCCGACCTGCGGGGCGC

>NZ_CP046572|2|1|5853376-5853536|PILER-CR
CTCGGCGGCGCCGATCTGCGGGACCT	CGACTTCACCGACTGCCGGTTCCGTGAGGCCAACCTCGTGCGAACCGA
CCTGCGGGGCGCGGTTCTGCGTGCGG	CCGACCTCCTCGGTGCCCGCACCGGGGGCGCGAAACTGGGCGGCGCCGA
CCTGCGGGGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046572.1\|WP_159925733.1\|5849343_5850231_+\|DUF4349-domain-containing-protein	unknown	unknown	gnl\|CDD\|379526
NZ_CP046572.1\|WP_159925721.1\|5839833_5841954_-\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|225272
NZ_CP046572.1\|WP_159925731.1\|5846009_5849264_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235553
NZ_CP046572.1\|WP_159925723.1\|5842293_5843289_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238568
NZ_CP046572.1\|WP_109331431.1\|5854849_5855974_-\|homoserine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|234678
NZ_CP046572.1\|WP_159927554.1\|5859279_5860428_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP046572.1\|WP_159925739.1\|5852531_5852999_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	unknown	unknown	gnl\|CDD\|223297
NZ_CP046572.1\|WP_159925745.1\|5854543_5854828_+\|DUF3017-domain-containing-protein	unknown	unknown	gnl\|CDD\|378602
NZ_CP046572.1\|WP_159925735.1\|5850227_5850533_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP046572.1\|WP_159925727.1\|5844367_5845144_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP046572.1\|WP_159925737.1\|5851627_5852551_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176112
NZ_CP046572.1\|WP_159925753.1\|5862352_5863384_+\|inner-membrane-protein-YhjD	unknown	unknown	gnl\|CDD\|188082
NZ_CP046572.1\|WP_159925751.1\|5861321_5862356_+\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|234866
NZ_CP046572.1\|WP_159925749.1\|5860463_5861270_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197336
NZ_CP046572.1\|WP_159925747.1\|5855970_5857254_-\|bifunctional-o-acetylhomoserine/o-acetylserine-sulfhydrylase	unknown	unknown	gnl\|CDD\|236105
NZ_CP046572.1\|WP_159925725.1\|5843285_5844371_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|376439
NZ_CP046572.1\|WP_109331429.1\|5857766_5858990_+\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|236226
NZ_CP046572.1\|WP_159925729.1\|5845136_5845868_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378676
NZ_CP046572.1\|WP_159925743.1\|5853672_5854542_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|237637
NZ_CP046572.1\|WP_159925755.1\|5863393_5864674_-\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|224600

Protein	Function_ID	Function_description	E-value
NZ_CP046572.1\|WP_159925733.1\|5849343_5850231_+\|DUF4349-domain-containing-protein	gnl\|CDD\|379526	pfam14257, DUF4349, Domain of unknown function (DUF4349). This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 282 and 353 amino acids in length. There is a single completely conserved residue D that may be functionally important.	8.70485e-66
NZ_CP046572.1\|WP_159925721.1\|5839833_5841954_-\|MMPL-family-transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	3.91476e-84
NZ_CP046572.1\|WP_159925731.1\|5846009_5849264_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235553	PRK05672, dnaE2, error-prone DNA polymerase; Validated.	0
NZ_CP046572.1\|WP_159925723.1\|5842293_5843289_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238568	cd01148, TroA_a, Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	1.01179e-74
NZ_CP046572.1\|WP_109331431.1\|5854849_5855974_-\|homoserine-O-acetyltransferase	gnl\|CDD\|234678	PRK00175, metX, homoserine O-acetyltransferase; Provisional.	0
NZ_CP046572.1\|WP_159927554.1\|5859279_5860428_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	6.75427e-91
NZ_CP046572.1\|WP_159925739.1\|5852531_5852999_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	1.05155e-78
NZ_CP046572.1\|WP_159925745.1\|5854543_5854828_+\|DUF3017-domain-containing-protein	gnl\|CDD\|378602	pfam11222, DUF3017, Protein of unknown function (DUF3017). This bacterial family of proteins with unknown function appear to be restricted to Actinobacteria.	6.78282e-17
NZ_CP046572.1\|WP_159925735.1\|5850227_5850533_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	7.74618e-20
NZ_CP046572.1\|WP_159925727.1\|5844367_5845144_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.22088e-101
NZ_CP046572.1\|WP_159925737.1\|5851627_5852551_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176112	cd08420, PBP2_CysL_like, C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold. CysL, also known as YwfK, is a regular of sulfur metabolism in Bacillus subtilis. Sulfur is required for the synthesis of proteins and essential cofactors in all living organism. Sulfur can be assimilated either from inorganic sources (sulfate and thiosulfate), or from organic sources (sulfate esters, sulfamates, and sulfonates). CysL activates the transcription of the cysJI operon encoding sulfite reductase, which reduces sulfite to sulfide. Both cysL mutant and cysJI mutant are unable to grow using sulfate or sulfite as the sulfur source. Like other LysR-type regulators, CysL also negatively regulates its own transcription. In Escherichia coli, three LysR-type activators are involved in the regulation of sulfur metabolism: CysB, Cbl and MetR. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.44769e-64
NZ_CP046572.1\|WP_159925753.1\|5862352_5863384_+\|inner-membrane-protein-YhjD	gnl\|CDD\|188082	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD. This family, including YhjD in E. coli, is a conserved inner membrane protein homologous YihY, which in turn was incorrectly assigned to be ribonuclease BN. This, any suggestion this family is similar to ribonucleases should be removed. [Transcription, Degradation of RNA].	5.08905e-65
NZ_CP046572.1\|WP_159925751.1\|5861321_5862356_+\|tryptophan--tRNA-ligase	gnl\|CDD\|234866	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.	0
NZ_CP046572.1\|WP_159925749.1\|5860463_5861270_+\|exodeoxyribonuclease-III	gnl\|CDD\|197336	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Neisseria meningitides Nape and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Neisseria meningitides Nape and NExo. Nape, found in this subfamily, is the dominant AP endonuclease. It exhibits strong AP endonuclease activity, and also exhibits 3'-5'exonuclease and 3'-deoxyribose phosphodiesterase activities.	6.39707e-122
NZ_CP046572.1\|WP_159925747.1\|5855970_5857254_-\|bifunctional-o-acetylhomoserine/o-acetylserine-sulfhydrylase	gnl\|CDD\|236105	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated.	0
NZ_CP046572.1\|WP_159925725.1\|5843285_5844371_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.75758e-73
NZ_CP046572.1\|WP_109331429.1\|5857766_5858990_+\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|236226	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase.	0
NZ_CP046572.1\|WP_159925729.1\|5845136_5845868_+\|hypothetical-protein	gnl\|CDD\|378676	pfam11575, FhuF_C, FhuF 2Fe-2S C-terminal domain. This family consists of several bacterial ferric iron reductase protein (FhuF) sequences. FhuF is involved in the reduction of ferric iron in cytoplasmic ferrioxamine B. This domain is the C-terminal domain that contains 4 conserved cysteine residues that are found to be part of a 2Fe-2S cluster.	1.73166e-06
NZ_CP046572.1\|WP_159925743.1\|5853672_5854542_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	gnl\|CDD\|237637	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional.	0
NZ_CP046572.1\|WP_159925755.1\|5863393_5864674_-\|penicillin-binding-protein	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	6.23404e-68

>NZ_CP046572.1|WP_159925739.1|5852531_5852999_-|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL
MFRVMFHEPRIPPNTGNAIRLVAGTGCELHLVGPLGFDLSEPKLKRAGLDYHDLASVTVHENLEAAWAAVEPARVFAFTAHATVSYADISYEPGDVLLFGPEPTGLSQEVLSDPHVTERLRIPMLPGRRSLNLSNAAALVTYEAWRQHGFRGAAL
>NZ_CP046572.1|WP_159925737.1|5851627_5852551_+|LysR-family-transcriptional-regulator
MPLSPRVPELNALDVLLSVERLGSMGAAGREHGLSQQAVSARVRTAERLFGIKVFSRGASGVRPTAEGALILEWASHILATAEELASGVAALRGERQAGLTVAASMTIAEYLVPGWTVAMRRKYPNVVTSVRLLNSSEVTARVLSGEADLGFVEGPDIPPGLQSREIGRDHLVVVVPPDHHWVRRSPIPVSELATTSMIQRESGSGTRTTLENAVPHCVPPLLELTSCTAVKAAVIAGNAPAVLSSLAVAADLTDGRLASVQVEGLTLPRRLSAVWDPVRGVRGAARDFLDIAVGATAGAGLTAQPL
>NZ_CP046572.1|WP_159925735.1|5850227_5850533_+|rhodanese-like-domain-containing-protein
MIEVDLSALDEALASGAPVIDVREADEYAQVRVPGVTLIPLSEFVSRVGEIPDADVVYVICAVGGRSLQAAEYLNGRGINAVSVAGGTSAWLQSGRPVETG
>NZ_CP046572.1|WP_159925733.1|5849343_5850231_+|DUF4349-domain-containing-protein
MKRYVLSAIVLMSLVLAGCGGSDSDSSQPAPVPGDSRSLEAGGALQAPAKDQAPTERQEIITGQVSITADDPVAVGRQIVDKVDAVGGRVDQLTEQPGSEDQDASSSLTIRVPADDLTRTLDDLRELGKVTSVSVTKSDVTMQSQDLDARIGALTASVTRLQGLITSAANTADLIEAERALSERQGELDSLTAQKRLLSDQIALATLTIDVTTTDTERPSSGPDNFWEGLVAGWHALLSAIKGGAVVVGALIPWFGFVAVIALVVYGAYRLRRMYNTPRRPTTGTAPQKEEANTE
>NZ_CP046572.1|WP_159925731.1|5846009_5849264_+|DNA-polymerase-III-subunit-alpha
MGWGNGPPSWSEMERVLSGRPGRVDPQSLYPGDGSDSPAWSRKRGEYRAGEQIRAGSTVPYAELHAHSAFSFLDGASPPEELVEEAVRLGLEAIALTDHDGFYGVVRFAEAAKELNMRTVFGSELTVGDAHLLVLARGQEGYRRLSREIAAAHLAGGEKGKVLYDMDRLADAAGGHWQILTGCRKGHVRQALAHGGPDAAARRLRELIDRFGAERVTVELTHHGIPEDGERNDCLAELAQQHGLGVIATTAAHFAAPPRRRLAMAMAAVRGRRSLDDAAGQLPPTGGSHLRSGEEMAHLFAAYPEAVSGAAKLGLECAFDLRLIAPQLPPFDVPDGHTEASWLRQLTMEGARRRYGAPEDHPQAYRQIEHELDTITTLNFPGYFLVVHDIVSFCKNNDILCQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLSPERDGPPDIDVDIESDRREEAIQHVYAKYGRQYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVDRWGGVGKGKGTDIPPAVLELAAQIEGYPRHLGIHSGGMVICDRPIADVCPVEWARMENRSVLQWDKDDCAAVGLVKFDMLGLGMLSALHYMIDLVAEHKGIEVDLAQLDLSEEAVYDMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYIRRRNKLEPVTYDHPSLEKALERTLGVPLFQEQLMQVAVDVAGFTPAEADQLRRAMGSKRSTEKMEQLKDRLYQGMRDVHGIGGDVADRIYEKLYAFANFGFPESHSQSFAALVFYSSWFKLHHPAAFCAGLLRAQPMGFYSPQSLVADARRHGVRVHGADINASLAHATVEAGGLEVRLGLGEVRHIGTALAERMVEARNDGGPFTSFLDLTGRVELNTAQAESLATAGALDSFGITRREALWAAGAAAGERRDRLPGMGASTRAPTLPGMSDLELAAADVWATGVSPDTYPTQFLRPQLDALGVIPAARLLQVPDGDRVLVGGAVTHRQRPATAAGVTFINLEDETGMVNVVCSVGLWAKYRKLANTAPALLVRGKVQNAEGAVTVVADRLQLMDLRMKAKSRDFR
>NZ_CP046572.1|WP_159925729.1|5845136_5845868_+|hypothetical-protein
MDEHLAQTYALTARRVPLLATWTALPDGRSFPAADMADAEWIAHRLTDTARRWGSGNSRVNGTLWWYSASSTLTGIPIATALVAGVAACPRLEGARAFLTADGYLGGLTASSVLPVADLASELAGTLTVLIDALAEASGVRRAVLWAITTDSIANRALDAGDGIGDRVRGSMFARQLVDAMRADGTVLPRPRFVDVHAGAVTRRFTQRASCCLIYETPGSAKCVSCPRRPAEDRLSGLAALVT
>NZ_CP046572.1|WP_159925727.1|5844367_5845144_+|ATP-binding-cassette-domain-containing-protein
MSGLGVQGLRAKLGSRDVLHGVDFAVRPGEMLGLVGPNGSGKTTALRCCYRAVSATAGAVVVGGVNVADLARRQLARTVGAVPQEPQSSAGVTVRESVSLGRIPHQGWFERDSAADREIVDRCLQQVGLAELAGRDVQALSGGERQRVAIARALTQQPRVLLLDEPTNHLDLRHQLILMELLRDLAAGGLALVVTMHDLRLAVQYCDTLAVMQHGRVITAGPPPDVLDDTVLGEVFGIRAVVRSGPRRSMDILGLADG
>NZ_CP046572.1|WP_159925725.1|5843285_5844371_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MTALTERTEVRPSSRSARSPLGFAGLIVLLVLTTLFVIGLAVSFGSVRIPVGDVWAIVVNRMLPGVFDAWWSQARESIVVGSRLPRALTAATVGAALALSGAVAQLVTRNPLADPYLLGVSSGAGFGVVIVTVLGFGAGMLGVFTVPVAAFVGAMVPLFLSLAIGGRYPQPTAIILVGVALAQVFSALITFSLLVLADERQLGSVMHWLAGGFGDARWSTMIFPVSALATVGTAMLWSARRIDVLQTGDDGATVLGMNVPRFRIVHLLGVSLLAGAAVSVAGGIGFIGLLVPHLAGYVVGIRAARLLPVAALLGAIAMVGADTAARSISSSLEVPVGVVTALVGAPLFVWMLQRRYRRAER
>NZ_CP046572.1|WP_159925723.1|5842293_5843289_+|ABC-transporter-substrate-binding-protein
MHRPLFRRSGLLTAAVAVLLAAACSRGEPGPGTTSAESFTAAVTITNCSLAQSFDAPPQRIVSMNDHVTEVLIEMGVGDRIVGTGYGDATPLPPFAEEFAKIPHRSKEYPTREQLLDLEPDLVVGGMRSAFDEKEGRSREFLAEHGIPTFLFSEYCGQGFPDIALMRDDFTQLGEILAVPDGARAISDRVTSGLQSVRATLAGSTAVPVFFYDSGEDVPLTVGGVGIGQLIADHAGAANIFSDGQKPFSTATWEIVGERSPEVIVVLDYGATSAQHKIDFLTAHPIMSATPAVKAGRFVVVPLDDFFESPRLVRSVETIARAVHPGAFSAR
>NZ_CP046572.1|WP_159925721.1|5839833_5841954_-|MMPL-family-transporter
MTRWASTVVSRRWWILVLAVAAVLVSGVWGTGVFAKLGSGGYTDPGSESAEVARIVEANLGPQTADIIVVYTAPEGRTLDDIGPEVTADLERFAAEVPTHKITSYWTADTTTKQRMVSEDGTKASAAVTVDPEAGITVAAFDGLLPKLEVEGIDTEFAGNSVVGVAFNNRLQQDLVLAEAIALPITLVLLVFLFGGVVAAAVPVFVGLLSIFSALATLRVLTLFTDVNSFAINVASLLGLGLAIDYGLFVVGRFREELESGADTAEATRRTVLTAGRTVLFSGLLLVCAFSGMLVFPQDVIASLGFGAMAAVASAALLSLTAVPALLAILGPRINAGSWRKDAAQRSEARARTFWGSVVTWVMRRPAAIAVGIVAGLLVLAAPLLSASLGEVTYTALPADDPARIATDTLTQEFPTTGNGATLILRGTDGSRPTAADGAAVAEQAGQVEGIGAATVVASNGELVAVQAVYAEGVDSDDQSGAVAALRDIAVPEGTELLVGGGQATVDDSNAAIVRWLPAMVAIMVLSTLVLLFLAFGSVVLPLKAVAMAGLSLAATFGVLTWIFQLGHGASLLGVSPAPLEATFVVLILAVVFGLSTDYEVFLMSRMVEAHAAGATTEEAVRFGTERTGRIVTAAALLLVVVTGAFTVSGLSIMRFLGVGMIVALLVDATVVRMLLVPSLVKLMGPANWWAPAWMTKVHSKVGIRH
>NZ_CP046572.1|WP_159925743.1|5853672_5854542_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase
MGSVTATILDGKATRDEIFEDLKVRVTALRDQGITPGLGTVLVGDDPGSAAYVRGKHNDCAKVGITSIRRDLPGDITQEKLDATIDELNANPDCTGYIVQLPLPRQLDENAALERIDPDKDADGLHPDNLGRLVLGKEAPLPCTPRGILHLLRRYEVPIEGAHVVVVGRGVTVGRPIGLLFTRRSENATVTLCHTRTRDLAAEVRRADIVIAAAGVPGLVTADMVKPGAAVLDVGVSRTEDGLRGDVAADVAEVAGFLSPNPGGVGPLTRAFLLSNVVERAERVAASRG
>NZ_CP046572.1|WP_159925745.1|5854543_5854828_+|DUF3017-domain-containing-protein
MADWGQFAKKNLPMLAVLLVIAVAVVFVLAERWRRGAFVFGVATLLAAIFRLTMPSERVGLLAVRSKSFDVGALVAVGGAIVWLAVSIDPLGTD
>NZ_CP046572.1|WP_109331431.1|5854849_5855974_-|homoserine-O-acetyltransferase
MTVSALQQLPVSDGRLGYIDIGSLELESGAVLPSVTLAVQRWGELSPTRDNVVLVEHALTGDSHVTGPMSDEHPSPGWWSGMVGPGAPIDTDEWCVVATNVLGGCRGTTGPGSIAEDGRPWGSRFPEISIRDQIAAEKKLTDLLGIGKLASVIGGSMGGMRALEWAVTYPDRIASALVLAVGARATADQIGTQTTQIEAIISDPDWQGGDYHGTGRIPRTGLGIARRIAHLTYRSESELDSRFANSPQVGEDPWRGGRYSVESYLQHQADKLVGRFDPSTYVLLSEAMNRHDVGRGRGGVAAALATVTAPVIVGGVDSDRLYPIRLQEDLANEIPTCDGLRVLNSRDGHDGFLTEADAVAKLLAETMELARTGR
>NZ_CP046572.1|WP_159925747.1|5855970_5857254_-|bifunctional-o-acetylhomoserine/o-acetylserine-sulfhydrylase
MTENWSFETKQIHAGQTSDATTKARALPIYQTTSYTFDNTDHAAALFGLAEPGNIYTRIMNPTQDAVEQRIAALEGGVAALLLSSGQAAETFAILNLAEAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLEQWRSAIRDNTKAFYGETVSNPRNDVLDLPGISGIAHQHGLPLIVDNTVPTPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRHPSFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRMERHVSNATTVAQYLEARPEVVSVGYTGLASSPWHERAKQIAPKGAGAIVTFELAGGIDAGKKFVNALTLHSHVANIGDVRSLVIHPASTTHSQLTPEEQAASGVTPGLVRLAVGIEGIDDIIADIETGLTAAAS
>NZ_CP046572.1|WP_109331429.1|5857766_5858990_+|NADP-dependent-isocitrate-dehydrogenase
MSKIKVEGTVVELDGDEMTRIIWQFIKDKLIHPYLDVNLEYYDLGIEYRDETDDQVTVDAANAIKKHGVGVKCATITPDEARVEEFGLKKMWRSPNGTIRNILGGTIFRAPIIISNVPRLVPGWTKPIIIGRHAFGDQYRATDFKVPGPGKVMITYTPEDGSEPIEHELVNFPEDGGVVQGQYNFTKSITDFARASLNYGLQQNYPVYLSTKNTILKAYDGAFKDIFQHVYETEFKSEFDAAGLTYEHRLIDDMVASALKWEGGYVWACKNYDGDVQSDTVAQGFGSLGLMTSVLLTPDGKTCEAEAAHGTVTRHFRQHQQGKPTSTNPIASIFAWTRGLEHRGKLDNTPDVIAFAQKLEDVVIKTVEGGQMTKDLAMLVGGDQGFLTTEEFLGALDINLQKAIAEQ
>NZ_CP046572.1|WP_159927554.1|5859279_5860428_+|MFS-transporter
MVALALGGFGIGTTEFVAMGLLPDMAASLGISEPTAGHVISAYALGVVVGAPLIAALTARVQRKTLLIALMAAFTLGNAATVLAPNYGVVMAARFVAGLPHGAYFGVAALVAAHLAERGKRAKAVALVMMGLSVANVVGVPAASWLGQNLGWRSAFVLVAGIGTVTLVAIWSWLPPLAAMRMTNPLTELGALRRPQVWMTLIIGMVGFGGMFAVYTYISTTLTDVAGLSRSLVPLALMIYGLGMVAGNLLGGRLADRALVPGLFVSMTALGVLLAVFVIASHNPYTALVLVFGVGAAGASMVPGLQTRLMDVAADAQTLAASLNHAALNIANAFGAWIGGVVIAAGYGYTAPAAVGALLAVAGLVVLTVAVAMERRSARSSR
>NZ_CP046572.1|WP_159925749.1|5860463_5861270_+|exodeoxyribonuclease-III
MPHIITTVNVNGVRAAARKGLTEWIERTEADVVCLQETRASDEQLAETLAPALASGWHLASAEPSAKGRNGVAVLSRRPADAFRVGHGDEEFLGAGRYLEADFDDLTVASLYLPSGEAQTPRQEEKERFMQSFGRYLADSARAAVAAGRHMVVCGDWNIAHTELDLKNWKTNKKNSGFLPHEREWMSALFAEDAYWSDVVRLLHPDIAGPYSWWSYRGKAFDNDSGWRIDYQIATRALAERAKQAVVERAESYDQRWSDHAPVTVQYR
>NZ_CP046572.1|WP_159925751.1|5861321_5862356_+|tryptophan--tRNA-ligase
MSTPADQKPTARPRVLSGIQPTADSFHLGNFLGALQQWVPLQDEFDAFYFIPDLHAITVAQDPKELRRRTKIAVAQLLAVGIDPDRSTLFVQSQVPEHAQLAWVLNCITGFGEASRMTQFKDKSAKQGTENASVGLFTYPVLMAADILLYRPQRVPVGEDQRQHLELARDLAQRFNTRFGKAFVIPEAQIIKGTAKIFDLQDPTSKMSKSGPSPAGLINLLDDPKVSAKKIKSAVTDNEREIRYDRETKPGVSNLLTIQSALSGTPIETLVAGYEGKGYGDLKSDTADVLTDFVTPLRAKVDEFLADEAELDRIIAAGAHRAREVSSQTLATVYEKVGFLTPKG
>NZ_CP046572.1|WP_159925753.1|5862352_5863384_+|inner-membrane-protein-YhjD
MSTVADEASILEKQRAARPWFDHVIRAAGRYQQQKGDYYAAGITYFSVLSLIPMLMIAFAIAGFILAGQPELLQELQESITKNVPGSLGDTLNTVIDSAIASRAGVGVLGLLGAAYAGLGWMANLRDALTAMWESTHESPGFLKTKLGDAGALIGLGLAMVVSLGASALSSGPVAGTVVRVLNLDNIAGIDLGLRVLSTLVSVVATWAVFTWVISRLPREPVAFRSAMKAAVLAAVVFEAFKQVGAIYLSIVTSGPAGVAFGPIIGLLVFIYLTCRMLLFATAWAATTQESLALAFVPPPDPAVITPRVQVNEGPGIGGGLALVGAGALAALGLSGLLFRSKR
>NZ_CP046572.1|WP_159925755.1|5863393_5864674_-|penicillin-binding-protein
MGIAVVSGVLFAGLSVTSVGAIPPVVPSPPTSTPFTTPNTDNCPNRSSPAPAVDSSEVPRPGDPTPSAMAVPDRPVGGAKLGACGVVLPDDAPPPPADISASGWVVADIDSGAVLAAKDPHGRYRPASTIKMLLALVALDELDLDKTVTATAEDAEVEGSAVGIGKNGRYTNRQLMQGLVMASGNDAAHLLARQLGGDDIAVEKMNRLADTLGAHDTRTATPSGLDGPGMSSSPFDLALIFHAAMKNPTFAELISTETVQFPGFPRDPAIPGDQDRPPFALANDNQLLYNYPGALGGKTGFTDDARHTYVGGADHGGRRLVVTLMGAEAQPIRPWEQAARLLDYGFGLDSDAEVGSLIDLEPSEDSSGAVLAATPDQNSADTTSSGVASSSDRADDTTALRIGVGVGGSAIILVLLLWAWRLLRRR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2412081 : 2480659

Vibrio_phage(14.29%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159921250.1\|2412081_2412420_+\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_109328756.1\|2412474_2413062_+	DUF2017 domain-containing protein	NA	NA	NA	NA
WP_159921252.1\|2413058_2414129_+	hypothetical protein	NA	NA	NA	NA
WP_109334996.1\|2414187_2414640_+	M67 family metallopeptidase	NA	NA	NA	NA
WP_109328760.1\|2414700_2414973_+	MoaD family protein	NA	NA	NA	NA
WP_159921254.1\|2414982_2415945_+	cysteine synthase	A0A1X9I5K7	Streptococcus_phage	4.2e-54	39.4
WP_159921256.1\|2415964_2416597_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_159921258.1\|2416811_2417579_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_159921260.1\|2417624_2418410_+	ribonuclease PH	NA	NA	NA	NA
WP_159921262.1\|2418414_2419029_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	2.5e-07	28.4
WP_109328772.1\|2419187_2419553_-	DUF3817 domain-containing protein	NA	NA	NA	NA
WP_159921264.1\|2419549_2419951_-	transcriptional regulator	NA	NA	NA	NA
WP_159921266.1\|2420170_2420653_-	HNH endonuclease	A0A2R2YAX6	Pseudomonas_phage	2.1e-30	54.5
WP_159921268.1\|2420649_2421309_-	hypothetical protein	NA	NA	NA	NA
WP_159921270.1\|2421765_2431107_+	DUF1729 domain-containing protein	NA	NA	NA	NA
WP_109328781.1\|2431118_2431511_+	holo-ACP synthase	NA	NA	NA	NA
WP_109328783.1\|2431577_2432279_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_159921272.1\|2432556_2433030_-	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_109334997.1\|2433191_2433413_+	DUF3618 domain-containing protein	NA	NA	NA	NA
WP_159927078.1\|2433903_2435133_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_109334998.1\|2435352_2435952_-	oligoribonuclease	M4M9I5	Vibrio_phage	9.0e-23	39.6
WP_159921274.1\|2437833_2438637_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_159921276.1\|2438656_2440681_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_159921278.1\|2440692_2441226_-	PadR family transcriptional regulator	H9EB19	Vibrio_phage	4.0e-06	36.1
WP_159921280.1\|2441345_2442671_+	MFS transporter	NA	NA	NA	NA
WP_159921282.1\|2442702_2443554_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_159921284.1\|2443577_2444318_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_159921286.1\|2444450_2445560_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_159921288.1\|2445591_2446764_+	acyl-CoA desaturase	NA	NA	NA	NA
WP_109328805.1\|2446776_2446989_+	hypothetical protein	NA	NA	NA	NA
WP_159921290.1\|2447051_2448395_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_159921292.1\|2448490_2448982_-	transcriptional regulator	NA	NA	NA	NA
WP_159921294.1\|2449077_2449794_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_159921296.1\|2450287_2450662_-	DUF4345 domain-containing protein	NA	NA	NA	NA
WP_159921298.1\|2450763_2452794_+	copper resistance protein CopD	NA	NA	NA	NA
WP_159921300.1\|2452961_2453426_+	single-stranded DNA-binding protein	A0A1J0MC80	Streptomyces_phage	7.8e-14	40.5
WP_109328817.1\|2453541_2455221_+	energy-dependent translational throttle protein EttA	A0A2K9L0W2	Tupanvirus	1.7e-47	27.4
WP_109328819.1\|2455222_2455648_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_159921302.1\|2455755_2460654_+	NAD-glutamate dehydrogenase	NA	NA	NA	NA
WP_159921304.1\|2460650_2461076_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_159921306.1\|2461068_2461755_+	hypothetical protein	NA	NA	NA	NA
WP_159921308.1\|2461744_2462671_-	EamA family transporter	NA	NA	NA	NA
WP_159921310.1\|2462658_2464257_-	DUF3459 domain-containing protein	NA	NA	NA	NA
WP_159921312.1\|2464324_2464720_-	globin	NA	NA	NA	NA
WP_109328830.1\|2464997_2465579_+	HNH endonuclease	H6WG01	Cyanophage	1.4e-17	35.5
WP_159921314.1\|2465655_2465916_+	hypothetical protein	NA	NA	NA	NA
WP_109328834.1\|2465902_2466382_+	DUF5130 domain-containing protein	NA	NA	NA	NA
WP_159921316.1\|2466531_2467758_+	DNA polymerase IV	A0A218MNF2	uncultured_virus	3.4e-16	25.8
WP_159921318.1\|2467860_2470440_-	aminopeptidase N	A0A2K9L1R3	Tupanvirus	8.6e-46	32.6
WP_159921320.1\|2470513_2471752_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_159921322.1\|2471899_2472529_+	disulfide bond formation protein DsbA	NA	NA	NA	NA
WP_159921324.1\|2472536_2473514_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_159921326.1\|2473582_2474056_+	ribose-5-phosphate isomerase	NA	NA	NA	NA
WP_159921328.1\|2474069_2474867_+	Fpg/Nei family DNA glycosylase	A0A127AWE5	Bacillus_phage	3.4e-09	27.9
WP_159921330.1\|2474912_2475713_-	DUF1542 domain-containing protein	NA	NA	NA	NA
WP_159921332.1\|2476277_2477654_+	trigger factor	NA	NA	NA	NA
WP_109328849.1\|2477838_2478426_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	9.1e-44	50.3
WP_109328851.1\|2478473_2479136_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.2e-36	44.8
WP_109328853.1\|2479378_2480659_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	7.1e-142	61.6

DBSCAN-SWA_2

3443130 : 3451415

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109335128.1\|3443130_3444762_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	1.2e-37	26.2
WP_159922615.1\|3444889_3445678_+	glucose 1-dehydrogenase	A0A0M4JSW6	Mollivirus	2.4e-07	35.5
WP_159922617.1\|3446294_3447443_+	lycopene cyclase family protein	NA	NA	NA	NA
WP_159922619.1\|3447474_3448371_+	Ku protein	A0A249XRB2	Mycobacterium_phage	2.5e-53	43.4
WP_159922621.1\|3448438_3448852_-	DUF59 domain-containing protein	NA	NA	NA	NA
WP_159922623.1\|3448848_3449346_-	SUF system NifU family Fe-S cluster assembly protein	A0A0K1LSF9	Mycobacterium_phage	1.7e-22	47.4
WP_159922625.1\|3449342_3450602_-	SufS family cysteine desulfurase	Q2XUY6	environmental_halophage	1.7e-100	45.5
WP_159922627.1\|3450608_3451415_-	Fe-S cluster assembly ATPase SufC	W8CYL7	Bacillus_phage	1.2e-06	26.7

DBSCAN-SWA_3

6058628 : 6065196

Lactobacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159926025.1\|6058628_6059192_+	FMN reductase	A0A2P0ZL77	Lactobacillus_phage	1.4e-09	27.7
WP_159926027.1\|6059214_6060048_-	SIP domain-containing protein	NA	NA	NA	NA
WP_109335193.1\|6060597_6060831_+	redoxin NrdH	V5UN81	Mycobacterium_phage	8.6e-22	63.6
WP_159926029.1\|6060919_6061396_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A217ER62	Bacillus_phage	1.2e-09	30.9
WP_109335192.1\|6061377_6063537_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	3.0e-209	52.0
WP_015890191.1\|6063614_6064580_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0N7CCA3	Skermania_phage	1.8e-161	88.7
WP_159926031.1\|6064722_6065196_-	NUDIX domain-containing protein	D0R7J3	Paenibacillus_phage	2.5e-15	30.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP046574

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

66501 : 209816

110

Mycobacterium_phage(18.18%)

integrase,transposase

attL 144972:145007|attR 148230:148265

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054246136.1\|66501_67272_+\|transposase	TnsA-like heteromeric transposase endonuclease subunit	NA	NA	NA	NA
WP_159929475.1\|67304_69362_+\|transposase	transposase	NA	NA	NA	NA
WP_159929195.1\|70240_70381_+	hypothetical protein	NA	NA	NA	NA
WP_054246139.1\|70387_71731_+	hypothetical protein	NA	NA	NA	NA
WP_054246140.1\|72002_72629_+	hypothetical protein	NA	NA	NA	NA
WP_054246141.1\|72640_73228_+	hypothetical protein	NA	NA	NA	NA
WP_054246142.1\|73524_74196_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_054246143.1\|74192_75587_-	cytochrome P450	V5UQK0	Mycobacterium_phage	1.3e-128	48.7
WP_054246144.1\|75602_76838_-	hypothetical protein	NA	NA	NA	NA
WP_063786592.1\|76834_77317_-	hypothetical protein	V5UP92	Mycobacterium_phage	1.9e-23	40.3
WP_159929197.1\|77427_77850_-	hypothetical protein	NA	NA	NA	NA
WP_159929199.1\|77846_78524_-	hypothetical protein	A0A142K8T1	Gordonia_phage	1.3e-06	51.5
WP_082359725.1\|78783_78933_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_082359726.1\|79101_79410_-	helix-turn-helix transcriptional regulator	V5UPP6	Mycobacterium_phage	5.5e-08	36.6
WP_054246179.1\|79753_80230_+	hypothetical protein	NA	NA	NA	NA
WP_054246149.1\|80226_80751_+	hypothetical protein	NA	NA	NA	NA
WP_054246150.1\|80747_81053_+	hypothetical protein	NA	NA	NA	NA
WP_054246151.1\|81287_81545_+	hypothetical protein	NA	NA	NA	NA
WP_082359728.1\|83585_84173_+	hypothetical protein	NA	NA	NA	NA
WP_054246153.1\|84464_85700_+	hypothetical protein	NA	NA	NA	NA
WP_054246154.1\|86989_87772_+	AAA family ATPase	NA	NA	NA	NA
WP_054246155.1\|87768_88140_+	hypothetical protein	NA	NA	NA	NA
WP_054246180.1\|88295_89576_+	DUF2637 domain-containing protein	NA	NA	NA	NA
WP_082359729.1\|90823_91048_+\|transposase	transposase	NA	NA	NA	NA
WP_122975572.1\|91071_92216_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	4.4e-34	32.7
WP_054246158.1\|92304_93321_+	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	2.0e-22	29.2
WP_054246159.1\|93629_95057_-	hypothetical protein	NA	NA	NA	NA
WP_054246160.1\|95391_96756_-	cytochrome P450	I6XF76	Cotesia_sesamiae_Mombasa_bracovirus	1.4e-15	23.9
WP_054246161.1\|96994_97339_+	hypothetical protein	NA	NA	NA	NA
WP_054246162.1\|97335_97689_+	hypothetical protein	NA	NA	NA	NA
WP_122975573.1\|97985_98957_-	DNA ligase	A0A2H4JD86	uncultured_Caudovirales_phage	7.3e-14	25.1
WP_054246164.1\|99121_99469_+	Lsr2 family protein	A0A160DF84	Gordonia_phage	7.1e-20	48.2
WP_054246165.1\|99849_100161_-	hypothetical protein	NA	NA	NA	NA
WP_082359730.1\|100323_100641_+	hypothetical protein	NA	NA	NA	NA
WP_054246166.1\|100720_101551_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_054246167.1\|102018_102426_-	hypothetical protein	NA	NA	NA	NA
WP_054246171.1\|103866_104811_-	hypothetical protein	NA	NA	NA	NA
WP_054246172.1\|105020_105209_+	hypothetical protein	NA	NA	NA	NA
WP_054246173.1\|105446_105791_+	hypothetical protein	NA	NA	NA	NA
WP_159929201.1\|105787_107872_+	hypothetical protein	NA	NA	NA	NA
WP_159929203.1\|107871_108669_+	hypothetical protein	NA	NA	NA	NA
WP_054246181.1\|108916_109165_-	hypothetical protein	NA	NA	NA	NA
WP_054246182.1\|109241_109601_-	hypothetical protein	NA	NA	NA	NA
WP_054246176.1\|109971_110991_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_054246177.1\|111099_111306_-	hypothetical protein	NA	NA	NA	NA
WP_054246178.1\|111928_112741_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.5e-23	31.1
WP_082359731.1\|112737_114432_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_054248224.1\|114978_115671_-	GAF and ANTAR domain-containing protein	NA	NA	NA	NA
WP_082359860.1\|116227_116905_+	ANTAR domain-containing protein	NA	NA	NA	NA
WP_054248216.1\|118015_119794_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.2e-92	39.9
WP_054248219.1\|121863_122211_-	hypothetical protein	NA	NA	NA	NA
WP_122975633.1\|124269_125469_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	3.1e-30	34.7
WP_082359863.1\|125365_126274_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_054248223.1\|126984_128244_+\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	1.1e-30	29.9
WP_159929205.1\|133502_133814_-	hypothetical protein	NA	NA	NA	NA
WP_054248832.1\|134856_135252_-	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA
WP_063786658.1\|137084_137498_+\|transposase	transposase	NA	NA	NA	NA
WP_159929477.1\|137494_138496_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_159929479.1\|139078_143857_+	AAA family ATPase	NA	NA	NA	NA
WP_054248763.1\|143853_144483_+	response regulator transcription factor	NA	NA	NA	NA
WP_159929207.1\|144714_144936_+	hypothetical protein	NA	NA	NA	NA
144972:145007	attL	NA	NA	NA	NA
WP_159929481.1\|146838_147840_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_054248953.1\|148757_150029_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
148230:148265	attR	NA	NA	NA	NA
WP_054248952.1\|150061_150874_+	3-(cis-5,6-dihydroxycyclohexa-1, 3-dien-1-yl)propanoate dehydrogenase	F2NZ40	Diadromus_pulchellus_ascovirus	3.0e-13	32.1
WP_054249008.1\|150936_152001_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_159929209.1\|152045_153140_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_054248892.1\|153233_154607_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_122975660.1\|156110_157481_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_054248802.1\|157503_158052_+	3-phenylpropionate/cinnamic acid dioxygenase subunit beta	NA	NA	NA	NA
WP_054248801.1\|158071_158989_+	biphenyl-2,3-diol 1,2-dioxygenase	NA	NA	NA	NA
WP_054248800.1\|159111_159969_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_054248799.1\|160019_160823_+	2-oxo-hepta-3-ene-1,7-dioic acid hydratase	NA	NA	NA	NA
WP_054248798.1\|160834_161605_+	4-hydroxy-2-oxovalerate aldolase	NA	NA	NA	NA
WP_159929211.1\|162954_164253_-\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_159929213.1\|164331_164493_-	hypothetical protein	NA	NA	NA	NA
WP_159929215.1\|167941_169312_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_054248802.1\|169334_169883_+	3-phenylpropionate/cinnamic acid dioxygenase subunit beta	NA	NA	NA	NA
WP_063786650.1\|169912_170278_+	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_082359919.1\|170515_171250_+	alpha/beta fold hydrolase	G9VYU4	Mycobacterium_phage	5.5e-06	34.0
WP_159929217.1\|171227_172394_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_054248916.1\|172536_174072_+	AMP-binding protein	A0A1V0SBX8	Catovirus	7.0e-19	26.0
WP_054248917.1\|175289_175877_+	peroxiredoxin	NA	NA	NA	NA
WP_054248918.1\|175880_176420_+	alkyl hydroperoxide reductase	NA	NA	NA	NA
WP_054248996.1\|176860_178081_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_082359922.1\|178154_180386_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_054248951.1\|180746_181322_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_159929219.1\|181433_182627_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA
WP_054248190.1\|182692_183880_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_054248825.1\|183914_184658_-	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	8.6e-07	28.2
WP_054247964.1\|184959_186249_+	MHS family MFS transporter	Q6JIH2	Burkholderia_virus	1.1e-46	33.2
WP_054247965.1\|186248_187889_+	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	3.7e-10	23.5
WP_122975638.1\|187885_188878_+	NADPH:quinone oxidoreductase family protein	NA	NA	NA	NA
WP_054248348.1\|189748_190015_+	hypothetical protein	NA	NA	NA	NA
WP_054248349.1\|190068_190287_-	hypothetical protein	NA	NA	NA	NA
WP_159929221.1\|190629_190770_+	hypothetical protein	NA	NA	NA	NA
WP_054248350.1\|191037_191802_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_054248351.1\|191954_192785_+	2-keto-4-pentenoate hydratase	NA	NA	NA	NA
WP_054248352.1\|192790_193771_+	acetaldehyde dehydrogenase (acetylating)	E5EQ71	Micromonas_sp._RCC1109_virus	1.2e-35	36.0
WP_054248353.1\|193767_194787_+	4-hydroxy-2-oxovalerate aldolase	E5EQ69	Micromonas_sp._RCC1109_virus	1.6e-40	32.3
WP_054248354.1\|195052_195505_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_054248357.1\|197250_198132_-	catechol 1,2-dioxygenase	NA	NA	NA	NA
WP_054248358.1\|198139_198619_-	cupin domain-containing protein	NA	NA	NA	NA
WP_054248359.1\|198629_199394_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_054248360.1\|199390_200887_-	pyoverdine biosynthesis protein PvcC	NA	NA	NA	NA
WP_054248361.1\|200883_201744_-	alpha/beta fold hydrolase	A0A1M7XTX4	Cedratvirus	1.8e-08	29.2
WP_054248871.1\|202320_202956_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_159929483.1\|203398_203911_+	flavin reductase	NA	NA	NA	NA
WP_159929223.1\|203966_204962_+	3-carboxyethylcatechol 2,3-dioxygenase	NA	NA	NA	NA
WP_159929225.1\|207059_208166_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_159929227.1\|208721_209816_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

225590 : 379231

103

Mycobacterium_phage(13.04%)

integrase,transposase

attL 224447:224463|attR 374058:374076

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
224447:224463	attL	NA	NA	NA	NA
WP_159929249.1\|225590_226739_+\|integrase	tyrosine-type recombinase/integrase	A0A166YH27	Gordonia_phage	4.3e-05	28.1
224447:224463	attL	NA	NA	NA	NA
WP_159929487.1\|228469_229265_+\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	2.6e-25	34.9
WP_159929250.1\|229306_229639_-	hypothetical protein	NA	NA	NA	NA
WP_159929489.1\|229800_230916_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_159929251.1\|232315_233050_-	hypothetical protein	A0A2P1JR43	Mycobacterium_phage	4.4e-11	54.5
WP_159929253.1\|233694_234141_-	hypothetical protein	NA	NA	NA	NA
WP_159929255.1\|234309_234618_-	EthD family reductase	NA	NA	NA	NA
WP_159929257.1\|234903_236439_-	AMP-binding protein	A0A1V0SBX8	Catovirus	4.8e-20	27.2
WP_159929491.1\|237016_238111_+	GAF domain-containing protein	NA	NA	NA	NA
WP_159929493.1\|238082_238661_-	response regulator	NA	NA	NA	NA
WP_159929259.1\|238904_240443_+	monooxygenase	NA	NA	NA	NA
WP_159929261.1\|240442_241534_+	monooxygenase	NA	NA	NA	NA
WP_159929263.1\|241530_241848_+	monooxygenase	NA	NA	NA	NA
WP_159929265.1\|241859_242891_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_159929267.1\|243129_244629_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_159929269.1\|244656_245766_+	NDMA-dependent alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.1e-29	29.8
WP_159929495.1\|246007_247600_+	chaperonin GroEL	A0A240F779	uncultured_virus	8.9e-134	50.7
WP_159929271.1\|248750_249050_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_159929497.1\|249863_250190_-	hypothetical protein	NA	NA	NA	NA
WP_159929273.1\|250000_251149_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	3.0e-22	31.2
WP_159925569.1\|256700_258224_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
252986:253002	attR	NA	NA	NA	NA
WP_159929275.1\|258223_258805_+	DUF779 domain-containing protein	NA	NA	NA	NA
252986:253002	attR	NA	NA	NA	NA
WP_159929277.1\|258851_259094_+	hypothetical protein	NA	NA	NA	NA
WP_159929279.1\|260821_261880_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_159929487.1\|262720_263517_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	2.6e-25	34.9
WP_159929281.1\|265284_268866_+	protein kinase	F2WL08	Lausannevirus	8.7e-20	29.4
WP_159929283.1\|270555_271332_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_159929285.1\|271616_272765_+\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	3.0e-22	31.2
WP_159929497.1\|272575_272902_+	hypothetical protein	NA	NA	NA	NA
WP_159929287.1\|273053_273626_-	hypothetical protein	NA	NA	NA	NA
WP_159929289.1\|274459_276040_+	methane monooxygenase	NA	NA	NA	NA
WP_159929291.1\|276238_277456_+	toluene hydroxylase	NA	NA	NA	NA
WP_159929293.1\|277561_277996_+	MmoB/DmpM family protein	NA	NA	NA	NA
WP_159929295.1\|278359_279394_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	M4R1G0	Synechococcus_phage	6.6e-05	34.0
WP_159929297.1\|279393_279981_+	methane monooxygenase	NA	NA	NA	NA
WP_159929299.1\|280056_281643_+	chaperonin GroEL	A0A240F779	uncultured_virus	1.8e-134	50.8
WP_159929301.1\|281805_283329_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_159929499.1\|283516_284317_+	cobalamin biosynthesis protein CbiM	NA	NA	NA	NA
WP_159929303.1\|284313_284691_+	hypothetical protein	NA	NA	NA	NA
WP_159929305.1\|284694_285465_+	cobalt ECF transporter T component CbiQ	NA	NA	NA	NA
WP_159929307.1\|285461_286232_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.1e-16	30.0
WP_159929501.1\|287014_287269_-\|transposase	transposase	NA	NA	NA	NA
WP_159929505.1\|290602_290806_+	hypothetical protein	NA	NA	NA	NA
WP_159929309.1\|290784_291558_+\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	2.1e-35	40.9
WP_159929503.1\|291454_292654_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.4e-30	34.7
WP_159929507.1\|293303_294332_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_054246426.1\|294328_294667_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_159929311.1\|294663_297066_+	hypothetical protein	NA	NA	NA	NA
WP_159929313.1\|300630_301884_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_159929315.1\|302319_303015_+	response regulator	NA	NA	NA	NA
WP_159929509.1\|303117_304611_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_159929503.1\|305203_306403_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.4e-30	34.7
WP_159929317.1\|307554_308565_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_159929319.1\|308669_308969_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_159929510.1\|309640_310999_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.9e-29	28.5
WP_159929321.1\|312463_313003_-	alkyl hydroperoxide reductase	NA	NA	NA	NA
WP_109330702.1\|313006_313594_-	peroxiredoxin	NA	NA	NA	NA
WP_054248916.1\|314882_316418_-	AMP-binding protein	A0A1V0SBX8	Catovirus	7.0e-19	26.0
WP_159929323.1\|316983_317265_-	hypothetical protein	NA	NA	NA	NA
WP_159929325.1\|317355_318636_-	monooxygenase	NA	NA	NA	NA
WP_159929326.1\|318640_319411_-	methane monooxygenase/ammonia monooxygenase subunit A	NA	NA	NA	NA
WP_159929327.1\|319619_320498_-	ammonia monooxygenase	NA	NA	NA	NA
WP_159929328.1\|323670_324963_+	NDMA-dependent methanol dehydrogenase	NA	NA	NA	NA
WP_159929329.1\|325023_326244_+	AAA domain-containing protein	NA	NA	NA	NA
WP_159929330.1\|326247_327774_+	VWA domain-containing protein	NA	NA	NA	NA
WP_159929331.1\|327909_328347_+	hypothetical protein	NA	NA	NA	NA
WP_159929332.1\|328343_329711_+	hypothetical protein	NA	NA	NA	NA
WP_082359731.1\|331177_332872_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_054246178.1\|332868_333681_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.5e-23	31.1
WP_159929333.1\|335930_336938_+	hypothetical protein	A0A0U4J920	Pseudomonas_phage	1.5e-46	40.1
WP_159929334.1\|341570_342992_+	sensor histidine kinase	NA	NA	NA	NA
WP_159929336.1\|342994_343690_+	response regulator	NA	NA	NA	NA
WP_159929338.1\|345487_346351_+	hypothetical protein	NA	NA	NA	NA
WP_159929340.1\|346357_346747_+	hypothetical protein	NA	NA	NA	NA
WP_159929342.1\|346700_347267_-\|transposase	transposase	NA	NA	NA	NA
WP_159929344.1\|348912_349962_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_159929346.1\|350600_350843_-	hypothetical protein	NA	NA	NA	NA
WP_159929348.1\|351010_351535_-	hypothetical protein	NA	NA	NA	NA
WP_159929350.1\|351589_352237_-	hypothetical protein	NA	NA	NA	NA
WP_159929352.1\|352237_352942_-	hypothetical protein	NA	NA	NA	NA
WP_159929354.1\|352994_353528_-	hypothetical protein	NA	NA	NA	NA
WP_159929356.1\|353539_354193_-	hypothetical protein	NA	NA	NA	NA
WP_159929358.1\|354189_354642_-	hypothetical protein	NA	NA	NA	NA
WP_159929360.1\|355175_355589_-	hypothetical protein	NA	NA	NA	NA
WP_159929362.1\|357351_358029_-	arsenate reductase ArsC	NA	NA	NA	NA
WP_159929364.1\|358028_359153_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_159929366.1\|359149_359539_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	6.1e-12	48.1
WP_159929368.1\|359616_360192_-	DinB family protein	NA	NA	NA	NA
WP_159929511.1\|360249_360573_-	thioredoxin family protein	NA	NA	NA	NA
WP_159929512.1\|363993_365193_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_082359752.1\|365393_366422_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_054246426.1\|366418_366757_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_054246427.1\|366783_366978_-	hypothetical protein	NA	NA	NA	NA
WP_054246428.1\|366925_369094_+	hypothetical protein	NA	NA	NA	NA
WP_159929370.1\|369250_370612_+	hypothetical protein	NA	NA	NA	NA
WP_159929372.1\|370521_371049_+	hypothetical protein	NA	NA	NA	NA
WP_159929374.1\|371154_373200_+\|integrase	integrase	NA	NA	NA	NA
WP_159929376.1\|373196_373529_+	hypothetical protein	NA	NA	NA	NA
WP_159929513.1\|373705_374002_+	hypothetical protein	NA	NA	NA	NA
WP_054248223.1\|374060_375320_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	1.1e-30	29.9
WP_159929378.1\|375454_376318_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.3e-17	29.1
WP_159929380.1\|376317_377229_+	hypothetical protein	NA	NA	NA	NA
WP_159929382.1\|378121_379231_+\|transposase	IS630 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046575

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP046573

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP046572

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP046574

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection