CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019398	Pseudomonas sp. S34 chromosome, complete genome	6 crisprs	DEDDh,DinG,csa3,RT,cas3	0	3	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019398_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019398_1

342928-343033

Orphan

Consensus_repeat	Method
GGCTCGTCGCGAGTGCGGTGTGAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019398_1

>merge|NZ_CP019398|1|342928-343033|CRISPRCasFinder
GGCTCGTCGCGAGTGCGGTGTGAGCCTGGTGTAAAGAAGGAACCCCTGACCTGCCTGTATCAAGGGCCCCAAAACGGCTGGGCTCGTCGCGGGTGCGGTGTGAGCC

>NZ_CP019398|1|1|342928-343033|CRISPRCasFinder
GGCTCGTCGCGAGTGCGGTGTGAGCC	TGGTGTAAAGAAGGAACCCCTGACCTGCCTGTATCAAGGGCCCCAAAACGGCTG
GGCTCGTCGCGGGTGCGGTGTGAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019398.1\|WP_008047735.1\|340642_341056_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP019398.1\|WP_150811996.1\|346854_347370_-\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|379230
NZ_CP019398.1\|WP_154861211.1\|356472_359679_+\|DUF2339-domain-containing-protein	unknown	unknown	gnl\|CDD\|227665
NZ_CP019398.1\|WP_090452600.1\|341986_342442_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	unknown	unknown	gnl\|CDD\|223297
NZ_CP019398.1\|WP_150812000.1\|342440_342881_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019398.1\|WP_008002929.1\|347668_349075_-\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884
NZ_CP019398.1\|WP_154861217.1\|337433_338729_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227278
NZ_CP019398.1\|WP_154861218.1\|335301_336078_-\|divergent-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|377404
NZ_CP019398.1\|WP_057712400.1\|349403_350858_+\|tRNA-4-thiouridine(8)-synthase-ThiI	unknown	unknown	gnl\|CDD\|234932
NZ_CP019398.1\|WP_154861216.1\|338959_340489_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NZ_CP019398.1\|WP_150726523.1\|341057_341312_+\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|274017
NZ_CP019398.1\|WP_057712399.1\|350997_352818_+\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_CP019398.1\|WP_057712409.1\|336079_337399_-\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NZ_CP019398.1\|WP_150812002.1\|334414_335170_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|223904
NZ_CP019398.1\|WP_154861214.1\|346237_346858_-\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|379230
NZ_CP019398.1\|WP_154861215.1\|343491_344928_-\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|273818
NZ_CP019398.1\|WP_150811994.1\|353038_353476_-\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|308985
NZ_CP019398.1\|WP_008047739.1\|341368_341854_+\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|180234
NZ_CP019398.1\|WP_057712404.1\|344924_346010_-\|nitrogen-regulation-protein-NR(II)	unknown	unknown	gnl\|CDD\|226370
NZ_CP019398.1\|WP_154861212.1\|353731_356182_+\|glycogen/starch/alpha-glucan-family-phosphorylase	unknown	unknown	gnl\|CDD\|340853

Protein	Function_ID	Function_description	E-value
NZ_CP019398.1\|WP_008047735.1\|340642_341056_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	7.51621e-25
NZ_CP019398.1\|WP_154861211.1\|356472_359679_+\|DUF2339-domain-containing-protein	gnl\|CDD\|227665	COG5373, COG5373, Predicted membrane protein [Function unknown].	4.34411e-104
NZ_CP019398.1\|WP_090452600.1\|341986_342442_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	2.4412e-88
NZ_CP019398.1\|WP_008002929.1\|347668_349075_-\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
NZ_CP019398.1\|WP_057712404.1\|344924_346010_-\|nitrogen-regulation-protein-NR(II)	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	1.24528e-163
NZ_CP019398.1\|WP_154861218.1\|335301_336078_-\|divergent-polysaccharide-deacetylase-family-protein	gnl\|CDD\|377404	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).	8.01527e-91
NZ_CP019398.1\|WP_057712400.1\|349403_350858_+\|tRNA-4-thiouridine(8)-synthase-ThiI	gnl\|CDD\|234932	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional.	0
NZ_CP019398.1\|WP_154861216.1\|338959_340489_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_CP019398.1\|WP_150726523.1\|341057_341312_+\|glutaredoxin-3	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	1.39732e-48
NZ_CP019398.1\|WP_057712399.1\|350997_352818_+\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_CP019398.1\|WP_057712409.1\|336079_337399_-\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	3.45372e-143
NZ_CP019398.1\|WP_150812002.1\|334414_335170_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	4.57918e-26
NZ_CP019398.1\|WP_154861217.1\|337433_338729_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	2.5571e-103
NZ_CP019398.1\|WP_154861215.1\|343491_344928_-\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
NZ_CP019398.1\|WP_150811994.1\|353038_353476_-\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|308985	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain. This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.	1.56468e-07
NZ_CP019398.1\|WP_154861212.1\|353731_356182_+\|glycogen/starch/alpha-glucan-family-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
NZ_CP019398.1\|WP_008047739.1\|341368_341854_+\|protein-export-chaperone-SecB	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	4.10556e-83
NZ_CP019398.1\|WP_150811996.1\|346854_347370_-\|DUF4124-domain-containing-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	1.08964e-06
NZ_CP019398.1\|WP_154861214.1\|346237_346858_-\|DUF4124-domain-containing-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	2.57957e-09

>NZ_CP019398.1|WP_150812000.1|342440_342881_+|hypothetical-protein
MHGSEGKDDAHSTPPEGVRSKLFLRVMGSLAIVGVMVGMMIGRLTTPDPSQLQQVEVTNDGLVVWFNNEPKTHGEIVDGSVALLFGAEGQAQKGQLKLGGKDVNWRVRLSDGGLLLTLVAARPLRGEWTGSEVDDRWRLEIHLREQ
>NZ_CP019398.1|WP_090452600.1|341986_342442_-|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL
MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRHADLASCLESLGHPRLFAFTTKGSRPFHDASFAPGDAFLFGPESRGLPAEVLDALPGEQRLRLPMREGCRSLNLSNTVAVAVYEAWRQNDFK
>NZ_CP019398.1|WP_008047739.1|341368_341854_+|protein-export-chaperone-SecB
MTDQQNTAANEEETAPQFSLQRIYVRDLSFEAPKSPAIFRQQWEPSVGLDLNTRQKTLEADFHEVVLTLSVTVKNGDEVAFIAEVQQAGIFLIKNLDDASMSHTLGAFCPNILFPYARETLDSLVTRGSFPALMLAPVNFDALYAQELQRMQAAGETPTVQ
>NZ_CP019398.1|WP_150726523.1|341057_341312_+|glutaredoxin-3
MSSVVVYSSDYCPYCSRAKYLLENKGVAFEEIKVDGKPQVRAAMAQKAGRTSVPQIWIGSTHVGGCDDLFALDRAGKLDALLRA
>NZ_CP019398.1|WP_008047735.1|340642_341056_+|rhodanese-like-domain-containing-protein
MVANLIQFATNHYILVGIFVVLLALLIAYQMQGGGRSLSTGELTGLVNKDAGVVIDIRPTKDFAAGHIVGALNIPQDKLTARVGELEKHKAKTIILVDAMGQTAGTHARELMKSGFTAAKLSGGISSWKADNLPLVK
>NZ_CP019398.1|WP_154861216.1|338959_340489_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MTTTPKPLVLMILDGFGHSDSPESNAIFAAKKPVLDRLWATVPNGLISGSGMDVGLPDGQMGNSEVGHMNLGAGRVVYQDFTRVTKSIRDGEFFENPTICAAVDKAVAAGKAVHFMGLLSDGGVHSHQDHLVAMAELAFKRGAQNIYLHAFLDGRDTPPKSAQSSIELLDATFQALGKGRIASIIGRYYAMDRDNRWDRVSQAYNLIVDGQGEFNAATAQEGLQAAYERGESDEFVKATSIGEPVKVEDGDAVVFMNFRADRARELTRVFVEDNFSEFERTRQPKLAGFVMLTQYAASIPAPSAFAAGSLENVLGDYLAKNGKTQLRIAETEKYAHVTFFFSGGREEPFPGEERILIPSPKVATYDLQPEMSAPEVTDRIVDAIENQRYDVIVVNYANGDMVGHSGVFEAAVKAVECLDRCVGRIVDALEKVGGEALITADHGNVEQMSDETTGQAHTAHTTEPVPFIYVGKRDLKVREGGVLADVAPTMLKLLGLEQPKEMTGTSILV
>NZ_CP019398.1|WP_154861217.1|337433_338729_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MLRVLIALALTCLLQPAFADERADTQQQLDATRQDIAELKKLLGKLQEEKSGVQKELKGTETEMGKLEKQVEALQKELKKSEAELQRLDAEKKKLQSARIEQQRLIAIQARAAYQNGRQEYLKLLLNQQNPERFARTLTYYDYLSQARLEQLKNFNETLRQLSNVEKDIAMQQAQLLVQQSSLDTQRDELEKVRKERQQVLAKLNDDVKARDQKLAAREQDQADLSKVLKTIEETLARQAREAEEARQKALIAQQEAEKKRLREAQAQADASDDAPRKPVRSTPGALVSSSGETFGGPFASTRGKLPWPVDGRLLARYGESRGDDARTKWDGVMIGASAGSAVRAVHGGRVVFADWLRGAGLLVILDHGNGYLSLYGHNQTLLKSAGDVVKAGEPISTVGNSGGQDTPALYFAIRQQGHPSDPAQWCHAQG
>NZ_CP019398.1|WP_057712409.1|336079_337399_-|S41-family-peptidase
MLHLSRLTSLALTIALVIGAPLAFAAQPAPVVAPAGTAATTKAPLPLDELRTFAEVMDRIKAAYVEPVDDKTLLENAIKGMLSNLDPHSAYLGPEDFAELQESTSGEFGGLGIEVGAEDGFIKVVSPIDDTPASKAGIQAGDFIVKIDGQPTRGQSMTEAVDKMRGKIGQKITLTLVRDGGTPFDVTLTRAVIQVKSVKSQLLESGYGYIRITQFQVKTGEEVSKALAKLRKDNGKKLKGIILDLRNNPGGVLQAAVEVVDHFITKGLIVYTKGRIANSELRFSATGKDESEAVPMVVLINGGSASASEIVAGALQDQKRAVLMGTTSFGKGSVQTVLPLNNERALKITTALYYTPNGRSIQAQGIVPDIEVRKAKITSEQDSDYFKEADLQGHLGNGNGGVDKPTGSSGKAKPMPQDDDYQLAQALSLLKGLSITSGR
>NZ_CP019398.1|WP_154861218.1|335301_336078_-|divergent-polysaccharide-deacetylase-family-protein
MFLRLLIGLLCCLAGLAHAEPAGSTSHKAYLSLIIDDLGQNLPRDRRVLALPGPVTAAIMPDTPHATEFAREAHRAGKIVILHMPMDPATGPFAWHPELPVDELEKRLNAAFKMVPYTSGINNHMGSRMTAQPTAMAWLMAALQRRHKFFVDSRTSAQTVAAAQAQKIGLASVSRDVFLDDERTEAAILTQLQTAISLAHKQGSAVMIGHPYPQTLAVLERELPKLKAQGIEWIDIRQMISVRGNRATAAHGKDGIYR
>NZ_CP019398.1|WP_150812002.1|334414_335170_+|transporter-substrate-binding-domain-containing-protein
MLKRFLIVLASASLLLINGANAKDSPDTDLVLLTENFPPYNMAKNGKNFAQDENIDGIATDIVREIFKRADITYSLTLRFPWERIYKLTLEKPGYGVFVMARLPDREKLFKWVGPIGPDDWIMLAKADSKITLETLNDARKYKIGAYKGDAIAETLAKQGLNPIVVLRDQDNAKKLVNGQIDLWATGDPAGRYLARQEGVNGLKTVLRFNSAELYLALNKDVPDETVAKLQAALDQMRKEGRVDEIMAQYL
>NZ_CP019398.1|WP_154861215.1|343491_344928_-|nitrogen-regulation-protein-NR(I)
MSRSETVWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQQPDVIISDIRMPGASGLELLARIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRANQHAQEQQGLEVAPTLTRTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLDEIGDMPADTQTRLLRVLADGEFYRVGGHVPVKVDVRIIAATHQNLETLVHAGKFREDLFHRLNVIRIHIPRLSDRREDIPTLAKHFLGRAAQELAVEPKLLKSETEEYLKNLPWPGNVRQLENTCRWITVMASGREVHIGDLPPELLSLPQDSAPVTNWEQALRQWADQALSRGQSSLLDSAVPAFERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGMKVDGGDDDEGDEG
>NZ_CP019398.1|WP_057712404.1|344924_346010_-|nitrogen-regulation-protein-NR(II)
MTISDALHRLLLDNLTTATILLDAELRLEYMNPAAEMLLAISGQRSHGQFISELFTESTEALNSLRQAVEQAHPFTKREAMLTALTGQTLTVDYAVTPILSNGDTMLLLEVHPRDRLLRITKEEAQLSKQETSKMLVRGLAHEIKNPLGGIRGAAQLLARELPEESLRDYTNVIIEEADRLRNLVDRMLGSNKLPSLAMCNVHEVLERVCHLVEAESQGCITLVRDYDPSIPDVLIDREQMIQAVLNIVRNAMQAISSQNELRLGRISLRTRAMRQFTIGHVRHRLVTKIEIIDNGPGIPAELQETIFFPMVSGRPDGTGLGLAITQNIISQHQGLIECDSHPGHTTFSIFLPLEQGATST
>NZ_CP019398.1|WP_154861214.1|346237_346858_-|DUF4124-domain-containing-protein
MKAWLLIACLFAQPASAEVFMYVDAQGNRVFTDQPKPGDARRVPLTRSNRIAANPTSAAPLIAESSPEVQALFHYEVLRILIPEPDATIRSNTGEVIVSATNEPALQPGHHYRLLLDGQPTAEPGLSPVFPLSNIDRGSHTLSVEILDEQGRIVERTANQPFHMQRTSLAQKRRIKPCTLEDYGQRPECPLSDRPDEEKNPFLRLF
>NZ_CP019398.1|WP_150811996.1|346854_347370_-|DUF4124-domain-containing-protein
MGRGFLFILLLVVLPATAQIYKYTDANGATAYSNQPPDGISAQPVDLPPLNSVERQPSGEAAPAAEAAHNELPRTTYEVLELTGLPSTEALRANNGTFTVTVLITPRLQGPHLLRLLLDSQPYGQPGNVPTLQLVNIDRGEHRLAVQVIDGENVVQQSPAVTFTVQRVHKP
>NZ_CP019398.1|WP_008002929.1|347668_349075_-|type-I-glutamate--ammonia-ligase
MSKSVQLIKDHDVKWIDLRFTDTKGTQHHVTMPARDALDDDFFEVGKMFDGSSIAGWKGIEASDMILMPDDSTAVLDPFTEEPTLILVCDIIEPSSMQGYDRDPRAIAKRAEEHLKATAIGDTVYAGPEPEFFIFDQVKFKSDISGSMFKIYSEQGSWMSDQDIEGGNKGHRPGVKGGYFPVPPFDHDHEIRTSMCNALEEMGLTVEVHHHEVATAGQNEIGVKFNTLVKKADETQTLKYVVHNVADAYGRTATFMPKPLYGDNGSGMHVHMSIWKDGKNTFAGEGYAGLSDTALYFIGGIIKHGKALNGFTNPATNSYKRLVPGFEAPVMLAYSARNRSASIRIPYVSSPKARRIEARFPDPAANPYLCFAALLMAGLDGIQNKIHPGDAADKNLYDLPPEEAKEIPQVCGSLKEALEELDKGRAFLTKGGVFSDDFIDAYIALKSEEEIKVRTFVHPLEYELYYSC
>NZ_CP019398.1|WP_057712400.1|349403_350858_+|tRNA-4-thiouridine(8)-synthase-ThiI
MKLIVKVFPEITIKSRPVRTKFIRQLAKNIRAVLRDLDPAVVVNGVWDNLELETRVTDPKALKEMGERLTCMPGIAHFLQIDEYPLGDFDDITEKCRQHYGDALAGKIFSVRCKRAGKHTFSSMDVEKYVGSKLRRECGAAGIDLKAPEIEVRIEVRDQRLFVIHSQHNGIGGYPLGALEQTLVLMSGGFDSTVAAYQIMRRGLMAHFCFFNLGGRAHELGVMEVAHFIWKKYGSSQRVLFVSVPFEEVLGEILGKVDNSHMGVVLKRMMLRASSQIADRLHIDALVTGEAISQVSSQTLPNLSVIDCVTEKLVLRPLIASHKQDIIDTAIEIGTADFARHMPEYCGVISVNPKTAAKRYRVEHEEKEFDMAVLERALENAKLVPIDRVIDELGQDLQIEEVSEALAGQIVIDIRHPDAAEDDPLDLAGIEVQTMPFYAVNARFKELDPTRQYLLYCDKGVMSRLHAHHLLSEGHANVRVYRPS
>NZ_CP019398.1|WP_057712399.1|350997_352818_+|translational-GTPase-TypA
MIENLRNIAIIAHVDHGKTTLVDKLLRQSGTLERNELNDERVMDSNDQEKERGITILAKNTAINWNGYHINIVDTPGHADFGGEVERVMSMVDSVLLLVDAQDGPMPQTRFVTKKAFEAGLRPIVCINKVDRPGARPDWVLDQIFDLFDNLGATEEQLDFKVVYASALNGIAGLDHTEMAEDMTPLYQSIVDNVPAPAVDREGPFQMQISALDYNSFLGVIGVGRIARGRVKPNTPVVAIGADGKKRNGRILKLMGHHGLHRIDVEEAAAGDIVCISGMDSLFISDTLCHPDTVEAMKPLTVDEPTVSMTFQVNDSPFCGKEGKFVTSRNIKERLDKELLYNVALRVEEGDSADKFKVSGRGELHLSVLIETMRREGFEMAVGRPEVIIRLVDGVKHEPFENVTIDLPEESQGKVMEEMGLRKGDLTNMVPDGKGRVRLEYNIPARGLIGFRNQFLTLTNGAGILTSIFDRYDVMKSGDMSGRQNGVLVSVETGKALTYSLETLQARGKLFVEHGQEIYNGQIVGLNSRDNDLGVNPTKGKKLDNMRASGKDETIALVPPVRFTLEQALEFIQDDELCEVTPKSIRLRKKILDESERTRAAKKAKA
>NZ_CP019398.1|WP_150811994.1|353038_353476_-|YkgJ-family-cysteine-cluster-protein
MMKPNLIAAAEIDRLDTWAKYSAPMCGSCMSSCCTLPVEVKIKDLIRIGVVDEFELGDPPKNIAKRLQKEGLVERFNQKSGIFTLQRMSNNDCLYLDRKSRLCTIYDKRPDTCRNHPKIGPRPGYCAYKPKEVERVQNSRSIERF
>NZ_CP019398.1|WP_154861212.1|353731_356182_+|glycogen/starch/alpha-glucan-family-phosphorylase
MTQEPLVREAEVAAFRDAVLTKLTYAVGKDPDHAFDHDWFEAIALAARDHMVEHWMDHTRQIYRKGQKRVYYLSLEFLIGRLLFDSLSNLGLLDVAREALTELGVDLERIRMLEPDAALGNGGLGRLAACFLESMSTLGIAGHGYGIRYEHGLFRQAIVDGWQQEQTEHWLDFGNPWEFERPEVAYTIGFGGSVETLTDDTGKSRQVWSPAETVRAIAYDTPVVGWRGASVNTLRLWRARAMEDLHLERFNAGDHLGAVAEVARAESISRVLYPADSTEAGQELRLRQEYFFVAASLQDLLRRHRNMHTSVLTLGDHASIQLNDTHPSIAVAELMRQLVDVYDVAWDAAWQVTVDTLSYTNHTLLPEALETWPVGLMERMLPRHMQIIYLINAHHIDSLRAKGIHDFDVLRAVSLIEEDNGRRVRMGNLAFLGSHSINGVSGLHTQLMRQTVFSELHKLYPERINNKTNGITFRRWLYQANPELTSMLVDALGPEVLDNPEERLLALESFAEKSAFRKAFAEQRLHSKKALAYLIHERLGVAVNPAAMFDVQVKRIHEYKRQLLNLMHTVALYQAIRAEPEIDWVPRVKIFAGKAAASYHQAKLIIKLTNDIARVVNNDPTVRGLLKVVFLPNYNVSLAESIIPAADLSEQISTAGFEASGTSNMKFGLNGALTIGTLDGANVEMSERIGTEHMFIFGLSAQQVEARKQNHEFSAVPDIAASHRLNDVLQAIRGGVFSPDDPSRYTGLIDSLVDYDRFLVCADFDSYWHAQMRVEAHWHDSKEWWRSAVLNTARMGWFSSDRTIREYATEIWKALE
>NZ_CP019398.1|WP_154861211.1|356472_359679_+|DUF2339-domain-containing-protein
MQWMFMLIGLVLGWILDESFSDALLGALFGLGIGQALRMARMDSQAVEQQRLLEQAQVALQAVEQRLALLEASGVKAPETREPLVSPETILDEAPAAAPELVWELPPELEPIAAAATETNRSQPADAWKPEPIAHQAQPPVPPRGPNLIDRAISRARAWLFGGNTVLRVGVVLLFLGLAFLLRYATEGVVVPVELRYAGVAAAALGLLGLGWWLRARNSSYALILQGAGIAVLYLTVFAAMRLHPLLDPTAGFGLLVAVTVCSAILAITQDSLGLAAAAALGGFAAPLLASTGAGSHVALFSYFALLNAGIFAIAWFKAWRLLNVIGFSGTFGIGFAWGLRSYSPEQLWSTEPFLILFFLMYLAIGLLFARRRLLEMSDAPAESSRESLLQWSARKGDYVDGTLLFGPPLVGFGLQFALVQHLEFAAAFSALALGMIYMGLARWLMAGRTLLLGETCLALGVIFTSLAIPLGLDARWTTAAWAVEGAGIFWLGLRQQRPLARAFALLLQLGSALVFLSELHNSESSLLGGVPLGALLLGIALLFSFYQLRKALPEQIRPWELKGLPVLACLGLAFLYLLAPLFFFSHGTVIGWALAGALTLLVGLRLPSRTFVFTALAVQLLGGALFLATGPLFSEGLSPLAHAGFWAPLVLGLAAMVGAWRLQIGPSPEAFEGLSLLRLSQALLVWGAGWWALAWVIEVLHFASLPMQATLLLSIAALSVALWTVLALRLKWPSLGVLGTVLIPAAALVLLAAWHSRYHPAADVGWLAWAAVFVVHFMSLRRLAPMLPARVTSVAHVLGCWLLMGVLALELRYGLLVLSEQYNAWRWLGWAILPSLYLVLMAAPRAWPWPVAAYSREYRVYAAAPLALLMLGWFWLANVASDGNAEPLPYVPLINPLELGVLFALFGIYVWSRSAMTQLSLHKDYAAIATQGVAGASLFVFFTALVMRTAHHWSGVPFELDLLLASMRVQAGLSIVWTLMALSLMIGGHLRRHREVWLIGAALIGVVVAKLFFVELSNRGGLARIVSFIGVGVLLLVVGYFAPLPPKRAEAVPDVEKPVPESEGVSS

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Crispr_ID: NZ_CP019398_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019398_2

715181-715274

Orphan

Consensus_repeat	Method
TGTGGGAGCGGGCTTGCTCGCGAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019398_2

>merge|NZ_CP019398|2|715181-715274|CRISPRCasFinder
TGTGGGAGCGGGCTTGCTCGCGAAGGCGGCCTGACAGCCGAACTGAATTTGGCGGATGTACCTCGACCCTGTGGGAGCGGGCTTGCCCGCGAAG

>NZ_CP019398|2|2|715181-715274|CRISPRCasFinder
TGTGGGAGCGGGCTTGCTCGCGAAG	GCGGCCTGACAGCCGAACTGAATTTGGCGGATGTACCTCGACCC
TGTGGGAGCGGGCTTGCCCGCGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019398.1\|WP_154861071.1\|718519_719797_+\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|236440
NZ_CP019398.1\|WP_154861069.1\|723709_724123_-\|Cu(I)-responsive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133383
NZ_CP019398.1\|WP_057712150.1\|708903_709197_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019398.1\|WP_150813550.1\|705242_706562_+\|type-VI-secretion-protein	unknown	unknown	gnl\|CDD\|274542
NZ_CP019398.1\|WP_057712147.1\|710523_711132_+\|DUF4136-domain-containing-protein	unknown	unknown	gnl\|CDD\|379281
NZ_CP019398.1\|WP_154861077.1\|711187_711751_+\|DUF4136-domain-containing-protein	unknown	unknown	gnl\|CDD\|379281
NZ_CP019398.1\|WP_154861068.1\|724119_726513_-\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_CP019398.1\|WP_154861067.1\|726722_727106_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019398.1\|WP_154861078.1\|709459_709762_+\|nucleotide-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|212144
NZ_CP019398.1\|WP_154861074.1\|715671_716028_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019398.1\|WP_154861080.1\|706558_707359_+\|DUF4123-domain-containing-protein	unknown	unknown	gnl\|CDD\|379225
NZ_CP019398.1\|WP_154861072.1\|716943_718296_-\|3-oxoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|236207
NZ_CP019398.1\|WP_154861075.1\|711859_714628_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226654
NZ_CP019398.1\|WP_154910393.1\|716086_716941_-\|acyl-dehydratase	unknown	unknown	gnl\|CDD\|366711
NZ_CP019398.1\|WP_057712135.1\|727255_727453_+\|heavy-metal-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|225328
NZ_CP019398.1\|WP_154861079.1\|707390_708740_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240541
NZ_CP019398.1\|WP_057712154.1\|703096_705010_+\|arginine-decarboxylase	unknown	unknown	gnl\|CDD\|235427
NZ_CP019398.1\|WP_008053922.1\|709761_710511_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|182918
NZ_CP019398.1\|WP_090452950.1\|722579_723473_+\|serine-protein-kinase-RIO	unknown	unknown	gnl\|CDD\|224632
NZ_CP019398.1\|WP_154861070.1\|720187_722134_-\|Cache-3/Cache-2-fusion-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910

Protein	Function_ID	Function_description	E-value
NZ_CP019398.1\|WP_154861071.1\|718519_719797_+\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|236440	PRK09268, PRK09268, acetyl-CoA C-acetyltransferase.	0
NZ_CP019398.1\|WP_154861069.1\|723709_724123_-\|Cu(I)-responsive-transcriptional-regulator	gnl\|CDD\|133383	cd01108, HTH_CueR, Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	1.56737e-77
NZ_CP019398.1\|WP_154910393.1\|716086_716941_-\|acyl-dehydratase	gnl\|CDD\|366711	pfam01575, MaoC_dehydratas, MaoC like domain. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase. The MaoC protein is found to share similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 4, peroxisomal hydratase-dehydrogenase-epimerase, fatty acid synthase beta subunit. Several bacterial proteins that are composed solely of this domain have (R)-specific enoyl-CoA hydratase activity. This domain is also present in the NodN nodulation protein N.	2.03836e-14
NZ_CP019398.1\|WP_150813550.1\|705242_706562_+\|type-VI-secretion-protein	gnl\|CDD\|274542	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.	2.57971e-60
NZ_CP019398.1\|WP_057712147.1\|710523_711132_+\|DUF4136-domain-containing-protein	gnl\|CDD\|379281	pfam13590, DUF4136, Domain of unknown function (DUF4136). This domain is found in bacterial lipoproteins. The function is not known.	1.07585e-29
NZ_CP019398.1\|WP_154861077.1\|711187_711751_+\|DUF4136-domain-containing-protein	gnl\|CDD\|379281	pfam13590, DUF4136, Domain of unknown function (DUF4136). This domain is found in bacterial lipoproteins. The function is not known.	3.77081e-40
NZ_CP019398.1\|WP_154861068.1\|724119_726513_-\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP019398.1\|WP_154861078.1\|709459_709762_+\|nucleotide-pyrophosphohydrolase	gnl\|CDD\|212144	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in mouse RS21-C6 protein and its homologs. RS21-C6 proteins, highly expressed in all vertebrate genomes and green plants, act as house-cleaning enzymes, removing 5-methyl dCTP (m5dCTP) in order to prevent gene silencing. They show significant sequence similarity to the dimeric 2-deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase or dUTPase) and NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, RS21-C6 contains a single MazG-like domain and functions as a tetramer (a dimer of dimers) with a typical four-helical bundle. Divalent ions, such as Mg2+, are required for its pyrophosphatase activity. This family also includes a pyrophosphatase from Archaeoglobus fulgidus (Af1178). Although its biological role remains unclear, Af1178 shows significant sequence similarity to the mouse RS21-C6 protein.	7.77136e-33
NZ_CP019398.1\|WP_057712135.1\|727255_727453_+\|heavy-metal-associated-domain-containing-protein	gnl\|CDD\|225328	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism].	6.30154e-12
NZ_CP019398.1\|WP_154861080.1\|706558_707359_+\|DUF4123-domain-containing-protein	gnl\|CDD\|379225	pfam13503, DUF4123, Domain of unknown function (DUF4123). This presumed domain is functionally uncharacterized. It is about 120 amino acids in length and contains several conserved motifs that may be functionally important. This domain is sometimes associated with the FHA domain.	1.46568e-09
NZ_CP019398.1\|WP_154861072.1\|716943_718296_-\|3-oxoacyl-ACP-reductase	gnl\|CDD\|236207	PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	0
NZ_CP019398.1\|WP_154861075.1\|711859_714628_-\|PAS-domain-containing-protein	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	1.01512e-54
NZ_CP019398.1\|WP_154861079.1\|707390_708740_-\|MATE-family-efflux-transporter	gnl\|CDD\|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	6.15422e-125
NZ_CP019398.1\|WP_057712154.1\|703096_705010_+\|arginine-decarboxylase	gnl\|CDD\|235427	PRK05354, PRK05354, biosynthetic arginine decarboxylase.	0
NZ_CP019398.1\|WP_008053922.1\|709761_710511_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|182918	PRK11036, PRK11036, tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM.	2.64903e-73
NZ_CP019398.1\|WP_090452950.1\|722579_723473_+\|serine-protein-kinase-RIO	gnl\|CDD\|224632	COG1718, RIO1, Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning].	8.21612e-78
NZ_CP019398.1\|WP_154861070.1\|720187_722134_-\|Cache-3/Cache-2-fusion-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	9.34998e-73

>NZ_CP019398.1|WP_154861075.1|711859_714628_-|PAS-domain-containing-protein
MSAGDKLFGRLLHRHPPPPPEPQEAPRVHSFGLQMQLNAEGRVVQLSGPLRHLLAQHPPSEQAPHLFDFLLPHSSLVIEGSPADWQGQTLDLDFYSLNGPPLHLRGWAQPLADTWLLQMLDIGDLLLERLQSRNREQCQVLAQQIAEQLRLCSLTRLPEVLTEQLQSLAQRFQIPCIALALLDEQEHGWQIHQHYAALDAPQLWQNGQRLGTGLDSLSGSAPQHLTPREHPRLQGAFGNTDGFAVPYHDAQGVVAWLLCGFFTAQKRAPDVTERDWLQITAALASPLLGRLREHRHHLQLERLESLQALLGTGWWEVFSDSDEVQLAPSLATTLNLGMSRLSMQDWLDQVYPADREELRICLQDLQETGTPLLLCVRLYRPYGAPAPAWYRLQGQALGAGKNRRLVGFMLDISDIKNQEQSAIAAHARLDNLIASSPAVIYVQRYVDGALHPVFFSDSLLPLLGWTLADCAPGALVERVHPDDRPQYFERTRLLLREGSVRARYRLRDSHGDYHWLLDEAKLLRNDLGLPVEAVGLWLDITEATLATEQVRQSEERYRMLVEDSPAMICRYQPDLTLTFGNRPLATCLELAPEQLPGVNLGDWMSGEQRTAFIQRLNRLSPEFPVSTAEINLQLPGCEHAWWVWSDRGVFDEHGRLLEVQAVGRDNTEVRRAQQQLTQSAKMATLGEMATGLAHEINQPLNVMRMAIVNVLKRLNNGDVQVDYLIDKLTRIDTQVQRAARVVDHMRVFGRRSETEQQPFNPVQAIEGTLSLLSEDLRDKGVDLRISETGFEVQVRGYVDQLEQVLINLMVNARDALLGKRETLPGFKPWISLYTERDTHSVRLWVEDNGGGIDPRLLERIFEPFFTTKPVGFGTGLGLSVSYDIVENMGGKLSVRNSTEGARFCIELPIVLPDQIAGDGRPE
>NZ_CP019398.1|WP_154861077.1|711187_711751_+|DUF4136-domain-containing-protein
MFRRFVLLAVAALLSACAANQVNHDFDASRDFAAYRSWTWKEPALQYRPDDPRIKSDLTEQRIRQAVADQLDQRGLRPAAAGAKSDLNVQTYLIVEERQQQVTTNYGGGWGNPWYGYYGAPMYNETRNVSYKVATIQIDLLDGKDGKLVWRGSDEQILSRTPNPTDRRDAIWETVTRILANYPPHAS
>NZ_CP019398.1|WP_057712147.1|710523_711132_+|DUF4136-domain-containing-protein
MKSHSGVLVFCLGLAACQGSNPYVATSNPLPPAPPQAANTFDRSAYPAAPRDYGRYRSWAWLDGHLPPGTAWADSAQIAEAVSNALDQRGLRPLHDNRPADLFVSADLRLETRLRQVQDDYYGGGYGGYNGYGPGYGGYATVPVVRTYQEQVVVVQVDMFDARSGQPVWSSSAETGNRGSESERADAIREAVKKAMSAYPPS
>NZ_CP019398.1|WP_008053922.1|709761_710511_+|methyltransferase-domain-containing-protein
MSDRHFDQLATRFAEKIYGGAKGAIRLAVLQADLAEILPDRPLRVLDIGAGLGHMSLWLAQRGHQVTLAEPAEPMLEGARQRFAEAGQSATFIQAPWQELLGQLTEPYDLVLCHAVLEWLAEPHAILPVLHQLTKADGWLSLAFYNRDALIYRNLLKGHFRKMRKNDMAGEKQSLTPQQPLDPRELAAQLEGLWQVETMSGVRVFHDYMPVEFQARAELADLLEMELAHRRHPSFAGLGRYLHWICRPV
>NZ_CP019398.1|WP_154861078.1|709459_709762_+|nucleotide-pyrophosphohydrolase
MNLVELTERLHAIRDRNDWRQFHSPKNLAMAASVEMSELVEIFQWLNEDQSRQLPADKLAHAGQEVGDIVLYLLLLCGELGLDMDAVVRSKLADSERRFS
>NZ_CP019398.1|WP_057712150.1|708903_709197_-|hypothetical-protein
MQVEGFSEWLGQVLGSIIRFIVDGLSGLFNLLSNASSNFIEGLSQALGMDTSVISIVTLILGLILLWSAIRAFLNASFIMGFIWLVLGLWLLSWIIH
>NZ_CP019398.1|WP_154861079.1|707390_708740_-|MATE-family-efflux-transporter
MSNLTADWRDRSTHRRVWALAAPMILSNISVPLVALVDSTVIGHLPHAHQLGAVAVGASLYTFLAWAMGFLRMGSTGFAAQAAGRGDGAALRQILLQGLLLAIGLAVVLGAVGVPLSGVALHFMQPSAELDQLTREFFHTRLFGLPAALASYALVGWFLGTQNARAPLAILLSTNLVNIALNLWFVLGLEWGVVGAARASVIAEWTGALIGLLMTRKALRAYPGHIVWAALALWQSWRPLLAVNRDIFIRSLALQSVFFLITVQGARLGDATVAANALLLNGLLLTAHALDGLAHAVEALCGHALGARNRDALRRSLVVAGGWSLLASLGFAALFLFAGHLFIEMQTDIQSVRDTAFIYLPYLAVLPLIAVWSYLLDGLFIGATRAREMRNGMLLTVALVLPFGWALQGGGNHGLWITFLLFMLLRSLTLGMIAWRLRRNDGWFAGGIH
>NZ_CP019398.1|WP_154861080.1|706558_707359_+|DUF4123-domain-containing-protein
MIATRTPEAPPQWLLLDVPGTPQAGVTLRQMFAQARWFGLFEGTEWHALHEQGPVLVDLRTCPALADLCIVDGKRWPGLLVVSEAGASSLLAHLRRMLTVTLGLHRALLSYYNPTTASYFFDACDAVELSRWLGPIHQLRWFGGSWADRAMGCEGWQRLSNPGLSVSPLAVEESLSVGQQGKLQTCLLEQHAWRWNRSTGVDFPRLWAHVQEGIALGFSERPVLDGWIWLRLQYPDAAPVQPLPGGTQQERLDHLRNLWQNDPPWP
>NZ_CP019398.1|WP_150813550.1|705242_706562_+|type-VI-secretion-protein
MFNPVSEPSFRLDVAGLPDSLEVLVFTGREAISEPFVFDLELLIEDPVLDLASLLYRPASLHFGPAGSYVHGQLHELVQRDHASGPRLCQVRLGPKLACLAQRFSQRIFSARSVPQILDQVLKEHGITGKDRRLELSGQYPPRDFCTQYRESDLQFLQRLCAQEGLHYHFEHRARGHCVVFGDDRQHFPTGEPVVLRSEGDRPTVRQFERRRSGGTAVQCAECRTDLATLRSGRLMPLSGHPVADCNRLWLLTRVEHWGSQDTTTPYHNQARALHWPAPIKPPCVTIEPRMHGPQRAWVVEVDEPSPDPQRPVPVQFDWLYQGEGATPSHCWLPLARQLQASTFTSIREGTELVVGFVEGDPDQPQITGVLHAPATVEVTDVDTPQPGCTHDEGLEQWLRSGEPLLMLCLLPGGGSFNHCAQALCTCRLATQLGQSSGA
>NZ_CP019398.1|WP_057712154.1|703096_705010_+|arginine-decarboxylase
MSVRRTRKDDGSQWTVADSRSVYGIRHWGAGYFAINDAGRVEVRPNGPSSSPIDLYEQVDQLRKSGLSLPLLVRFPDILQDRVRQLTGAFDANIERLEYQSKYTALYPIKVNQQEAVIENIIATQNVSIGLEAGSKPELLAVLALAPKGGTIVCNGYKDREFIRLALMGQKLGHNVFIVIEKESEVGLVIEEAASLKVKPQVGLRVRLSSLASSKWADTGGEKSKFGLSAAQLLSVVERFRAAGLDQGIRLLHFHMGSQIANLADYQHGFKEAIRYYGELRNLGLPVDHIDVGGGLGVDYDGTHSRNASSINYDMDDYAGVVVGMLKEFCDAQSLPHPNIFSESGRSLTAHHAMLVIQVTDVEKHNDDVPQIENKEALPETVQWLVDLLGPTDIEMVTETYWRATHYMSDVASQYADGKLTLAEKALAEQCYFAVCRRLHNSLKARQRSHRQVLDELNDKLADKYICNFSVFQSLPDTWAIDQVLPIIPLHRLDEEPLRRAVLQDLTCDSDGKINQYVDEQSIETSLPVHALKEGEDYLLGVFLVGAYQEILGDMHNLFGDTDSVNIYQNADGSVYHAGIETHDTIEDMLRYVHLSPEELMTHYRDKCASARISATERTQFLDALRLGLTRSSYLSS
>NZ_CP019398.1|WP_154861074.1|715671_716028_+|hypothetical-protein
MFKPTPNPPRIRRRFSLPIPHSNKFHEAADRALDHYLNPPKPPAVHKPSTMFVIAPDIDTETLLAHACESLASASVMASDFAGFLEGSQRNTLLGIAQVIMLGELAVNRALDNLDPQN
>NZ_CP019398.1|WP_154910393.1|716086_716941_-|acyl-dehydratase
MITDWHTLNREPGLPGLYARAATRRKITGTTLPDSGLSCWVEVDPKRLAAYRKVCGFADNGLLPPTYPHILGFALQMQLLTTRDFPFPLLGLIHLSNRVRVLRPMGGVNRVRVSVQVQNLQPHAKGATFDLLTTLDDQLGPLWEAESRMLCRGVKLEGEPLEESLVSSLALSEVEHWKAPSDIGRQYAKVSGDYNPIHLSAASARLFGFPTAIAHGLWNKARTLAALAGHLPVANVEIAVQFKKPVRLPSEVTLLASAPGPSGDFQLVGVGELEHMVGHWRPVA
>NZ_CP019398.1|WP_154861072.1|716943_718296_-|3-oxoacyl-ACP-reductase
MSDRYIDFANSSIGHRLVGALGLPTPTRLERWQAGRLRPVEGALLIGGGPLAEHVSAFANRLTDAIYSYGTEPSMTTAWIPGHGPKLKAVVFDASDLLHTDQLKQLREFFQPLMKNLDHCAHLVILGRDPQTLRDPFAASAQRALEGFSRSLAKELRSGGTLQLIYVGEGAEGQLEGPLRFFLSPKSAFVSGQVIRLNPCLTPVTDWTRPLAGRKALVTGAARGIGAAIAETLARDGADVILLDVPPAKNDLEALASRLGGRTITLDICAEDAAAQLIEQLPDGLDIVVHNAGITRDKTLANMTPEFWDAVLAVNLNAPQVLTKALLDSGALHDNGRVILLASISGIAGNRGQTNYAASKAGLIGLAQAWAPLLHERSISINAVAPGFIETQMTAHIPFGLREAGRRMSSLGQGGLPQDVAEAVAWLAQPGTGAFTGQALRVCGQSVLGA
>NZ_CP019398.1|WP_154861071.1|718519_719797_+|acetyl-CoA-C-acetyltransferase
MTQLHRVAIIGGNRIPFARSNGPYATASNQVMLTAALEGLIERYNLHGQRIGEVVAGAVLKLSRDMNLTRECVLGSRLSPATPAYDIQQACGTGLEAALLVANKIALGQIDCGIAGGVDTTSDAPISVSEGLRKILLQANRAKTTGDKLKTFLQLRPKHLIPEFPRNGEPRTGLSMGQHCELMAQTWNIPRQAQDQLALESHQKLAASYAEGWHNDLMTPFLGLTRDNNLRPDSTLEKLAALKPAYEKSAKGTLTAGNSTPLTDGASLVLLGSEEWAKARGLPILAYWRDGEAAAVDFVNGAEGLLMAPVYAVPRLLARNGLTLQDFDYYEIHEAFAAQVLCTLKAWEDPEYCKTRLGLDTALGSIDRSKLNVKGSSLAAGHPFAATGGRIVANLAKLLDAAGKGRGLISICAAGGQGVTAIIER
>NZ_CP019398.1|WP_154861070.1|720187_722134_-|Cache-3/Cache-2-fusion-domain-containing-protein
MNIKQKLTWAFAIIACLPVVLVATLVVLNLRSDARDEFVDGSAREIRQVSNAMQLFFDGISQNVDYLAKQPLIRNSDDSLKTYMAANAESVPQGEADKKVFALLQDLGNSHPAYAYAILGTAAGGYVSWPDDPKLNNYDPRQRPWYKSAQAKPGKPFRTEAYYWAQDDATYVSTVRTIDNKLGTNGGVVSIDVTLKQLTEIVKQIKLGETGYLMLLENTGMVLVDPKQPEHNFKPLSTLGDGYAQLAKAGKGLVEVELNGEHYMANVWPSEQLGWTFIGLIKQDDVMSSATQLTWLIAIIAAALAVIFAIVGASFASLIVRPIRSVASGLEGIAQGEGDLTQNLQIRGNDETAQLANWFNQFLTAIRNLIQNIGGAAGKILATSKSSTQVSNDMAEAAGRQREAVDMVSTAFHEMVATANEVARSCSQAAESADSGQRQAREGQQQIDAAVNSVDRLSQEIEQSAQSMQQLERDSNDIQSILGTIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAKRTADSTAEIDGLLGNLAKRTSQVTQQMHASLEVSQQSVTRIGEARNSFGQIRESVDVIRDMNTQIATAAEQQHQVAEDINRHISQIHGDAQLVAELANSARLDSQSLAGLSNELDGLVRRFRT
>NZ_CP019398.1|WP_090452950.1|722579_723473_+|serine-protein-kinase-RIO
MKTPKRIEPLIEDGLVDEVLRPLMSGKEAAVYVVRCGNELRCAKVYKEANKRSFRQAAEYQEGRKVRNSRQARAMAKGSKFGRKETEDAWQNAEVAALFRLASAGVRVPKPFDFLEGVLLMELVADEYGDAAPRLNDVVLEPDQAREYHAFLISQIVLMLCTGLVHGDLSEFNVLLTPTGPVIIDLPQAVDAAGNNHAFSMLERDVGNMASYFGRFAPELKKTKYAKEMWALYEAGTLHPASVLTGEFADTEELADVGGIMREIEAARLDEERRQAVRAADDAPPGKTEEPPPPWMQ
>NZ_CP019398.1|WP_154861069.1|723709_724123_-|Cu(I)-responsive-transcriptional-regulator
MNIGQAARHSGLSAKMIRYYESIGLLKAAHRTDSGYRVYGEDDLHTLAFIKRSRDLGFSLEEVGKLLTLWQDRQRASADVKALARQHIDELNQKIRELGQLRDTLQDLVEHCQGDHRPDCPILKNLESGCCTSPTHA
>NZ_CP019398.1|WP_154861068.1|724119_726513_-|heavy-metal-translocating-P-type-ATPase
MSESTTFDLPIAGMTCASCAGRVERALSKVIGASAVSVNLATEQARVQAPGDSLPALIDAVAKAGYSVPQQSLELSIDGMTCASCTGRVERALGKVAGVKSVSVNLANERAHLELLGQIDPQTLIAAVTKAGYSASVWEAEHPPTDNQQQRLHRERLALIIAIALALPLVLPMLLQPFGVHWMLPAWAQFALATPVQFIFGARFYVAAWKAVRAGAGNMDLLVALGTSAGYGLSLYEWATAAGRMPHLYFEASAVVIALVLLGKYLESRAKRQTASAIRALEALRPERAIRVTDGHEQDVAISALRLNDLVMVKPGERFPVDGEVIEGQSHADEALISGESLPVPKQPGDKVTGGAINGEGRLLVRTQALGAETVLARIIRLVEDAQAAKAPIQKLVDKVSQVFVPTVLLIALATLIGWWLYGAPMETALINAVAVLVIACPCALGLATPTAIMAGTGVAARYGILIKDAEALERAHEVSAVVFDKTGTLTSGAPRIAHLSAIDGNEAGLLQLAGALQRGSEHPLAKAVLDACAERGLKVADVSDSQSLTGRGIAGNLEGRRLALGNRRLLEDSGLSAGPLADSAIAWEKEGRTLSWLIEQSPEPHVLGLFAFGDTLKPGALQAVQQLSARNISSHLLTGDNRGSANVVAQALGIHDVYAEVLPADKAATVAALKQTGVVAMVGDGINDAPALAAADIGIAMGGGTDVAMHAAGITLMRGDPRLVPAALEISRKTYAKIRQNLFWAFVYNLIGIPLAVFGVLNPVLAGAAMALSSVSVVSNALLLKTWKPKDLEDNR
>NZ_CP019398.1|WP_154861067.1|726722_727106_-|hypothetical-protein
MRWSVFSLFGFLSLFAAVPSANAASQDYGVLIISRERLEVATSCEIGVYIQDQLAARLFQEQSTSFNLPPGIVSLRLKLLPGQMPGCNPGMLAPGSQDIRLKAGDVLKYRIAMTQEGMYLKRAGLGY
>NZ_CP019398.1|WP_057712135.1|727255_727453_+|heavy-metal-associated-domain-containing-protein
MQVFNVEGMSCGHCVKAITQALQAKDPAASVRVDLAAREVGVESALTAEQVIEAISEEGYGVKLA

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Crispr_ID: NZ_CP019398_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019398_3

2280554-2280664

Orphan

Consensus_repeat	Method
TGTAGCTTAGTTGGTTAGAGCGCACCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019398_3

>merge|NZ_CP019398|3|2280554-2280664|CRISPRCasFinder
TGTAGCTTAGTTGGTTAGAGCGCACCCCATGCTCTGTGGTTAAGAGCAGGGTGAGGTCGGCCTTAGCAGCTCGAAATTGGGTCTGTAGCTCAGTTGGTTAGAGCGCACCCC

>NZ_CP019398|3|3|2280554-2280664|CRISPRCasFinder
TGTAGCTTAGTTGGTTAGAGCGCACCCC	ATGCTCTGTGGTTAAGAGCAGGGTGAGGTCGGCCTTAGCAGCTCGAAATTGGGTC
TGTAGCTCAGTTGGTTAGAGCGCACCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019398.1\|WP_154910311.1\|2272371_2273481_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340913
NZ_CP019398.1\|WP_154910291.1\|2265090_2265756_-\|RraA-family-protein	unknown	unknown	gnl\|CDD\|223756
NZ_CP019398.1\|WP_150812769.1\|2269398_2270775_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|182433
NZ_CP019398.1\|WP_174245511.1\|2271264_2272206_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176124
NZ_CP019398.1\|WP_150814717.1\|2285762_2286176_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319899
NZ_CP019398.1\|WP_159389658.1\|2292696_2295501_-\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226418
NZ_CP019398.1\|WP_150812772.1\|2275080_2275959_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176133
NZ_CP019398.1\|WP_159389656.1\|2289105_2289828_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|380375
NZ_CP019398.1\|WP_159389652.1\|2267882_2269337_+\|amino-acid-carrier-protein	unknown	unknown	gnl\|CDD\|376500
NZ_CP019398.1\|WP_159389655.1\|2285195_2285624_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019398.1\|WP_159389653.1\|2273588_2274980_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|184426
NZ_CP019398.1\|WP_159389654.1\|2276036_2278241_+\|OsmC-domain/YcaO-domain-containing-protein	unknown	unknown	gnl\|CDD\|132588
NZ_CP019398.1\|WP_057715518.1\|2287926_2288988_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP019398.1\|WP_057715520.1\|2286265_2286925_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP019398.1\|WP_159389657.1\|2290145_2291096_+\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|227311
NZ_CP019398.1\|WP_159389651.1\|2266911_2267730_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP019398.1\|WP_154860549.1\|2265861_2266755_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
NZ_CP019398.1\|WP_154947899.1\|2291247_2292732_+\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226418
NZ_CP019398.1\|WP_057715519.1\|2286911_2287763_-\|3-hydroxybutyryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|180269
NZ_CP019398.1\|WP_057715523.1\|2284394_2285156_-\|DUF4239-domain-containing-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP019398.1\|WP_154910311.1\|2272371_2273481_+\|MFS-transporter	gnl\|CDD\|340913	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters. This group is composed of uncharacterized bacterial MFS-type transporters including Bacillus subtilis YcxA and YbfB. YcxA has been shown to facilitate the export of surfactin in B. subtilis. The YcxA-like group belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.83582e-33
NZ_CP019398.1\|WP_154910291.1\|2265090_2265756_-\|RraA-family-protein	gnl\|CDD\|223756	COG0684, MenG, Demethylmenaquinone methyltransferase [Coenzyme metabolism].	5.08496e-46
NZ_CP019398.1\|WP_150812769.1\|2269398_2270775_-\|MFS-transporter	gnl\|CDD\|182433	PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.	0
NZ_CP019398.1\|WP_174245511.1\|2271264_2272206_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176124	cd08433, PBP2_Nac, The C-teminal substrate binding domain of LysR-like nitrogen assimilation control (NAC) protein, contains the type 2 periplasmic binding fold. The NAC is a LysR-type transcription regulator that activates expression of operons such as hut (histidine utilization) and ure (urea utilization), allowing use of non-preferred (poor) nitrogen sources, and represses expression of operons, such as glutamate dehydrogenase (gdh), allowing assimilation of the preferred nitrogen source. The expression of the nac gene is fully dependent on the nitrogen regulatory system (NTR) and the sigma54-containing RNA polymerase (sigma54-RNAP). In response to nitrogen starvation, NTR system activates the expression of nac, and NAC activates the expression of hut, ure, and put (proline utilization). NAC is not involved in the transcription of Sigma70-RNAP operons such as glnA, which directly respond by the NTR system, but activates the transcription of sigma70-RNAP dependent operons such as hut. Hence, NAC allows the coupling of sigma70-RNAP dependent operons to the sigma54-RNAP dependent NTR system. This substrate-binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.788e-62
NZ_CP019398.1\|WP_150814717.1\|2285762_2286176_-\|VOC-family-protein	gnl\|CDD\|319899	cd06588, PhnB_like, Escherichia coli PhnB and similar proteins. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to bleomycin resistance proteins, glyoxalase I, and type I extradiol dioxygenases.	1.52813e-47
NZ_CP019398.1\|WP_150812772.1\|2275080_2275959_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176133	cd08442, PBP2_YofA_SoxR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold. YofA is a LysR-like transcriptional regulator of cell growth in Bacillus subtillis. YofA controls cell viability and the formation of constrictions during cell division. YofaA positively regulates expression of the cell division gene ftsW, and thus is essential for cell viability during stationary-phase growth of Bacillus substilis. YofA shows significant homology to SoxR from Arthrobacter sp. TE1826. SoxR is a negative regulator for the sarcosine oxidase gene soxA. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine, which is involved in the metabolism of creatine and choline. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.24339e-90
NZ_CP019398.1\|WP_159389658.1\|2292696_2295501_-\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|226418	COG3903, COG3903, Predicted ATPase [General function prediction only].	6.45942e-69
NZ_CP019398.1\|WP_159389652.1\|2267882_2269337_+\|amino-acid-carrier-protein	gnl\|CDD\|376500	pfam01235, Na_Ala_symp, Sodium:alanine symporter family.	0
NZ_CP019398.1\|WP_159389656.1\|2289105_2289828_-\|pirin-family-protein	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	1.32982e-75
NZ_CP019398.1\|WP_159389653.1\|2273588_2274980_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|184426	PRK13968, PRK13968, putative succinate semialdehyde dehydrogenase; Provisional.	0
NZ_CP019398.1\|WP_159389654.1\|2276036_2278241_+\|OsmC-domain/YcaO-domain-containing-protein	gnl\|CDD\|132588	TIGR03549, TIGR03549, YcaO domain protein. This family consists of remarkably well-conserved proteins from gamma and beta Proteobacteria, heavily skewed towards organisms of marine environments. Its gene neighborhood is not conserved. This family has an OsmC-like N-terminal domain. It shares a YcaO domain, frequently associated with ATP-dependent cyclodehydration for peptide modification. The function is unknown. Fifteen of the first sixteen members of this family are from selenouridine-positive genomes, but this correlation may not be meaningful.	0
NZ_CP019398.1\|WP_057715518.1\|2287926_2288988_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	9.34084e-32
NZ_CP019398.1\|WP_057715520.1\|2286265_2286925_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.72718e-13
NZ_CP019398.1\|WP_159389657.1\|2290145_2291096_+\|DJ-1/PfpI-family-protein	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	3.77598e-93
NZ_CP019398.1\|WP_159389651.1\|2266911_2267730_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.38302e-26
NZ_CP019398.1\|WP_154947899.1\|2291247_2292732_+\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|226418	COG3903, COG3903, Predicted ATPase [General function prediction only].	4.33109e-68
NZ_CP019398.1\|WP_057715519.1\|2286911_2287763_-\|3-hydroxybutyryl-CoA-dehydrogenase	gnl\|CDD\|180269	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated.	5.97749e-172
NZ_CP019398.1\|WP_154860549.1\|2265861_2266755_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	8.11698e-63

>NZ_CP019398.1|WP_159389654.1|2276036_2278241_+|OsmC-domain/YcaO-domain-containing-protein
MEIKVNFLDNLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCETRNIPTENIRLSQNNIVDPENRYNQIFKIQVELPADISAKDRQGILRSIDRCTVKKVVQTGPEFVIEEVENLDADAQALLMPHSTSEAGTYIVGKDLPLEQTIANMSGILADLGMKIEIASWRNIVPNVWSLHIRDAHSPMCFTNGKGATKEGALASALGEFIERLNCNFFYNDQFWGEDIANAAFVHYPDERWFKPGPKDELPTEILDEYCLKIYDRDGELRGSHLYDTNSGNIQRGICSLPFVRQSDNEVVYFPSNLIENLFLSNGMSAGNTLAEAQVQCLSEIFERAVKREILEGEMALPDVPQEVLAKYPGILAGIQALEEQGFPVLVKDASLGGEFPVMCVTLMNPRTGGVFASFGAHPSLEVALERSLTELLQGRSFEGLNDLPQPTFEGQAVTEPNNFVEHFIDSSGVVSWRFFSAKPDFEFVEWDFSGQGENSNTEEAATLFGILEDMGKEVYMAVYEHIGAKACRILVPGYSEIYPVEDLIWDNTNKALQFRADILNLHSLSKVGLRSLAQGLENSELDDYTDITTLIGIEFDDNTPWGKLTILELRLLIYLALQKFDQAKDLVEAFLQYNDNTVERGLFYQAVNVVLEMQLDDDLELSDYEVNFRRMFGNERMDAAIGSVDGSVRFYGLTPTSMKLEGLDRHLRLIESYKKLHMARARVSALFN
>NZ_CP019398.1|WP_150812772.1|2275080_2275959_+|LysR-family-transcriptional-regulator
MDLVQLEIFKAVAEHGSISVAAQHIHRVPSNLTTRIKQLELDLGVDLFIREKSRLRLSPAGWSFLDYARRILDLVQEARATVAGEEPQGAFALGSLESTAAVRIPELLAAYNQKHAKVELDLSTGPSGTMIDGVLSGRLAAAFVDGPVLHPALEGVPAFEEEMVLIAPLNHDPIHRAKDVNGENIYAFRSNCSYRHHFESWFANGAAVPGKIFEMESYHGMLACVSAGAGLALMPRSMLESMPGCTTVSVWPLSESFRYLRTWLVWRRGTVSQSLTMFVRLLEERGVVLIDK
>NZ_CP019398.1|WP_159389653.1|2273588_2274980_-|aldehyde-dehydrogenase-family-protein
MTNVSSLTHAISINPATGEQIGHYPFESDSALQAALTRAATGFRAWRGKPVEQRAQLLINLAQALRNNAQAMANMITLEMGKPIAQARGEIEKCAQLCQWYAEHGPAMLSPEPTLVEGGKARIEYRPLGPILAVMPWNFPIWQVLRGAVPTLLAGNTYVLKHAPNVMGSTYLLLEAFKQADFPEGVFEVINVTPDGVSKAIADPRIAAVTLTGSVRAGMAIGAQAGAALKKCVLELGGSDPFIVLDDADLDEAVKAAVIGRYQNTGQVCAAAKRLIVEQGIAREFTRKFVEATQQLVVGDPLATTTYIGPMARFDLRDELDQQVRDTLKEGATLLMGGKKAEGPGNYYEPTVLGDVTDQMTSFKQELFGPVASIITARDAAHALELANDSEFGLTATLYTRNVELARQMASELETGGVFINGYSASDPRVSFGGVKKSGFGRELSHFGVREFCNAQTVWLDRR
>NZ_CP019398.1|WP_154910311.1|2272371_2273481_+|MFS-transporter
MLQVLVWGGSFFLMAVMADPIMKETGWASQWVYGALSLSILVSAMLAPLTSRLIARYGGRPILASSGLGVAIGLFLLAISTSLPMFLLSWAVIGVGMALGLYEALFAALGSLYGERAGSAITGITLISGFATTLSWPAVALVIEHVGWRTTCVAYGVLLVIAVAPLYLWVLARGTGPLTKSPAVSDESLSIDRRIYLLLTLIFALGAVIMTAMSVQLISLLQGQGYSLAAAIGLSALLGPSQVGSRVLQVFSRKRHPIWTTLISVVFVAIGLLFVTISPAMTALGLVIYGAGNGLRAIVRGLLPLALMSPTHYVLLMGRMARPSLIGQALTPLAAGYLLEIWGAGGVLAGLSSLAVLNVLLVLLLIRLV
>NZ_CP019398.1|WP_174245511.1|2271264_2272206_+|LysR-family-transcriptional-regulator
MLTGLVMDVVQLKTLIHVAELGSLSKASDRLHIAQPALSRQIRLLEKELGTYLFDRHGRGMEITDAGREVLAHATRIMEEMESIRSSVVGAKSSFRGTVVIGTTPTVAQIITVPLVRKIKEAHPNLAVRFSSAFSGYLLDWVQRGELELAISYDPHPLHTLRIVPVMMENLLLVGPASANLRLDTPISFESLAEQQLVLPSARHSLRVILDDCARQVGIKLKTSVEADSFGAMIDLVRNGFGLTALPLASIYAQVDAGVLSAAPLVDPVPMRKLVQVFPADRRVSPAAKFVGDAFIEIAADLVNRKIWAGHML
>NZ_CP019398.1|WP_150812769.1|2269398_2270775_-|MFS-transporter
MSASITDAKDHAAQTAAMRAPNRVKAIMGACSGNLVEWYDFFIYAYTAIYFAASFFPKGDTTSQLLATAGVFAVGFFMRPLGGWIFGWIADTRGRKVSMIISVFMMCAGSLLIAVMPTYATIGVAAPILLVVARLIQGLSVGAEYGTGATYISEIATPGRRCFYGSFQYFTIIAGQLLALMTVVILQQTLTGEELREWGWRIPFFIGALSSVVVVYLRRAMHETANKKDMNRKDAGSLRGMFKHKRAVALVVAFTIGGSLYFYTFTTYMQKFLVISAGFSPETVSFIMTAALIGFMLCQPLFGLLADRIGIKAHMLMFSGLAMLLVIPLLYSLQSVSNPFMAFVLVFGGLAIASLYTPIAGIVKAELFPPAVRALGVGFPYAVGNAAFGGTAEYVALSLRSQGIEEYFFFYVAAVVTITFIAAMLMPNLSRYGYISGSGEIEERTGLKGRVKPHAARV
>NZ_CP019398.1|WP_159389652.1|2267882_2269337_+|amino-acid-carrier-protein
MLEVINSFLSGKLLIVLIVGLGGYFTIRSRFVQFRHFLHMFGAFRDSVQKSAGQISSFQALMLSLAGRVGAGNIAGVGLAVTLGGPGAVFWMWVTALVGMSTSFFECSLGQLYKRCDAKGQFRGGPSYYIQYGLKQAWLGKVMAVLLLVTFGFAFNGLQSHAVTHSLNNAFGFSTTYSGIAIAVLLGLVFMGGIKRIAAVSDLLVPVKTLAYIGVTVYVIVLQFDHVPGMLVTIFKSAFGLDQAFAGLVGSAIVMGVKRGVFANEAGLGSAPNVAAVAKVDHPAAQGVVQAFSVFLDTFVICTCTALLILLSGFYTPGFEGDGLVLTQNALAAVVGDWGRTFISVALALFVFTSILYNYYLGENNLRFLLGDKRAAVMIYRGLVLLLILWGAVQNLGTVFAFADITMTLLAFVNLIALALLFNVGMRLLRDYDRQRKAGIKSPIFDSSQFADLDLDLQAWPHREKVGNSIPESAPQVAPASAVR
>NZ_CP019398.1|WP_159389651.1|2266911_2267730_+|alpha/beta-fold-hydrolase
MTASETFTHTQLPLTVEGVQLNVAAIHRNGNLTPIVFLHGFGSTKEDYADIVQHAEFAGHPFLAYDAPGCGESQCSDLSSISIPFLLQTALQMLEHFGIERFHLVGHSMGGLTALMLAHQFPERVISFVDIEGNIAPEDCFLSRQIDAYPSDDPEKFFTAFIERARQAPAYASALYSASLRQKVRAGAVRGIFRSMVDLSDNADLMSRFLGLKCPRMFMYGEQNASLSYLSHIEAQGVRLAPIPACGHFPMYSNPIAMWKQIADFQTGSRTG
>NZ_CP019398.1|WP_154860549.1|2265861_2266755_+|LysR-family-transcriptional-regulator
MINFRLIRHLWLFLAVAEEQNFGRAAKRLGMSQPPLSEQIQVLEQALKVQLFERSRRGAKLTPVGAAILPAVRKFAEQLERLELAVEEAVAGQSGMLTIGAISTAMFDVLPGLIEQMKDDYPHLTVSVREIDSVEAVPALEAGDIDLAFARLDGDLGASIQSLPLLEDRLVVALPSDHPLAARTRISLSSLANEPLVMFSRKVSPVYFDYLIATCRASGFSPRVLHEVRSVASQIAFVSYGQGIALVPASLKKMAPDNVVFRSLSQKLNVVTTAVAWNADRPNPLIAEVIARLRKKA
>NZ_CP019398.1|WP_154910291.1|2265090_2265756_-|RraA-family-protein
MNKKSLLDRLAALDTNTVSDALDFLGLAGATVGLRPLWNCPKIVGRASTVLLAPKSDSVPTVHLITPVVEQIDSDDRVLVIAGGIEGISCWGDILANAAAGKQVRGTVIDGFSRDIDGSESIGYPVYGRGVTMISARNRVVQIDAAVTINVAGVDVSEDDYVIADNCGTVFVPQAYIEKVVDLGERITRRQDGMVEAVRSGRSVAEVMHDTQFEAIQVERS
>NZ_CP019398.1|WP_057715523.1|2284394_2285156_-|DUF4239-domain-containing-protein
MNDVVIALIVFACLSASALMGSYVRERLPSHHLSDDSVAVVKLATGLIATMSALVLGLLVSSAKGTFDTANAELEGAAAKVVQFDRLLARYGPDTQGIRTELKHNYAEVTQVLATRDHRQIEKLDSPEVIRRSEGLQRQVESLTPGNDDQRALKAKALQDMDTVFAARWLTLLQANQSIPPVMLVILVTWLGIIFGSFGLFAPCNGTIVAVLLMCALSTGATILLVEELNRPLDGFICVSLDPLEHTLERLGQ
>NZ_CP019398.1|WP_159389655.1|2285195_2285624_-|hypothetical-protein
MPAHDASWPTRCKLLLLAGGMIASLLTLNGCTTVDAQTTAYVGVEHPAPTSPDQVVVLRSEPLRPHVRLGEVLIDASIDPAPPITEVEQKLREESAKLGGDAVVVVYDHIQAVGAYASGPLWARDVRTIEGRKLKGIVIKYQ
>NZ_CP019398.1|WP_150814717.1|2285762_2286176_-|VOC-family-protein
MKINPYLIFNGDCKAAFTFYAQCLQGQIEAMMTFGETPAGEHVPTDLHNLIIHTRLIVGDQAIMGSDTTPDRPVQGMSGCSISLNVDSIAEAERVFKALADGGSVQMPLETTFWAARFGMLVDRFGVSWMVNCEKDQ
>NZ_CP019398.1|WP_057715520.1|2286265_2286925_-|TetR/AcrR-family-transcriptional-regulator
MPMPERCSRFAEYRDKVLELFACKGFGQVGMRELATCLGLSPGSLYHHYPSKQHLLLDLIEEFYEELLATLGRIQQKAPGKRDKLNSLIRAHLNLHREMPWHFRLVERDSGCLNEEQQDRVRQLREQYERTLLRMLGAKSRFSEQGLLAAGHAIGALLNSAPSWLTPHVLDEQEREELLESMVSGAIERVLAPRRVPEAISLARPIEKTSKETQASTKI
>NZ_CP019398.1|WP_057715519.1|2286911_2287763_-|3-hydroxybutyryl-CoA-dehydrogenase
MNLQNIGVIGAGTMGNGIAQVCAMAGFNVTLLDISESALQKAVATVGKNLDRQIAKETLTPEQKQAALDKIRTSTDYSSLQNAQLVIEAATENLDLKLRVLQQIAAQVSSECVIASNTSSLSITQLAASVSQPERFIGLHFFNPVPVMGLIEVIRGLQTSDATHQLALDMATTLGKTAITAGNRPGFVVNRILVPMINEAILVFQEGLASAEDIDAGMRLGCNQPIGPLALADLIGLDTLLSILEAFYDGFNDSKYRPAPLLKEMVAAGYLGRKTGRGFHAYA
>NZ_CP019398.1|WP_057715518.1|2287926_2288988_+|AraC-family-transcriptional-regulator
MREKDSVAAYFVQAMIHGLRDDPQRVTAVLEQAGIDPAVMHQPTARVPANAFAALWLIQIRELDDEFFGLDSHGMPPGSFALICRALIQEPDLHKAMRQCLANFGLFLRDFRGSLAVRGKRAVISLDTRSTDNDASRFGEETFLVLMISLLCWLGGRRIPIDRADFRHSRLSLGDDRLLWGPNLTFGAERTEIEFASHYLRLPVVQDLASLKVFLRTAPQWLVIRFRNQHGLASQVHQRLRGSHYSQWPTLQAFALEQHLSPSTFRRKLEREGCSYQEIKDEVRRGVAFEQLRQSDASISDIAEQLGFQEPSAFHRAFKKWTGESPGRYRARYQGEQGAEVATLVAGGAGTCE
>NZ_CP019398.1|WP_159389656.1|2289105_2289828_-|pirin-family-protein
MLTLRKASDRGLANHGWLKSFHTFSFASYRNPKEQGFSDLLVINDDRVAAGKGFGQHPHRDMEIFSYVLEGALEHKDTLGTGSVIRPGDVQLMSAGSGVAHSEFNHSGTRPVHFLQIWIVPDVSGAKPRYQQEHFSTQKKRGRLQLIISPDGAKGSLKVRQDARVYAGLIDGKESATLELAANRYAYVHVARGNVELNGVLLQEGDGVRVREEQVLTLSNGVDAEVLVFDLRPQELPEMP
>NZ_CP019398.1|WP_159389657.1|2290145_2291096_+|DJ-1/PfpI-family-protein
MKTVAMVLFPDFLLLDMAGPMEVFSIANRYLKPEDHYVLTTIGTEPGALRASNGVSVYADRHIDQACEGFDLLLVPGGPGAYNEKHPPLLDWLRHNVSRSAGYGSICTGAFVLGHAGLLDGYRVTTHWHYTERLIKGFPKATVETDQIFVQDRNLITSGGVTAGIDLALSVVAQDHGKKVAQDVAKVLLVVMKRQGGQAQFSPLMAAVAPHETAITRVQNHVLEHLDETYSIESMAGLANMSPRHFARVFARDVNMTPMEFLQSARIDCARNLLETTELPLKTVAFKSGFGSVRHMRFLFSEKLGLTPTQYREQFS
>NZ_CP019398.1|WP_154947899.1|2291247_2292732_+|winged-helix-turn-helix-domain-containing-protein
MNSLRDINSEAVLQFGPYAFHLSQRLVLEGDRPLRLGGRALDVLQVLVEHAGSVVSKEELIAQVWPRSVVEEINLRVHIAALRRALGDGQNGQCYIVNIPQRGYSFVAPVQHSPQPVSFPSETVKKPLHNLPARLTPITGRDAVVGSLVRQLPVRRFMTLVGPCGIGKTTVALRVAELLLQHYRHGVWLVDLAAIDDPAQVTDHLTRTLGLEVGTTLEALAQRHALLVLDNCEHLLERCQTLIETLLASLPRLSILATSREPLQAAGETVLRLPPLAVPPVSALRSVDEVMGYSAVQLFVSRARARQQGFTLREQDLKTVREICRRLDGLPLAIELAAAQIDALALVGLQAQLDNCFQLLSQGRRTAVPRHQTLKAALDWSYERLTAAEQTVLQRLAVFKMAFTRDAAIGVICCDRLPAADLIKVMESLALKSLLTLEQGREVARYRFLNTTRTYALEKLELSGELRALEMRYAGYVSQARWPSGGQVALQLVE
>NZ_CP019398.1|WP_159389658.1|2292696_2295501_-|winged-helix-turn-helix-domain-containing-protein
MTLSPEQAVHFGPYRVYPGQRLVMEADQPLRLGRRAMDILLILLEHAGNVVSKQQLIARVWPNSVVEDINLRVHMAALRKALGDGQAGQRYIVTVAQRGYSFVAPHSLEQAEQPPAPEACAPSRHNLPVRRTRMIGRQTLVDNLMVQLPRQRFITLVGPGGIGKTTVALRVAEQMIGRYRDGIRLLDLAPINCPLMIDGHLATLLELALHDDAPLNGLADCLRDRQMLLVIDNCEHLVDAIAHLCETILRSAPHVHILATSRESLRAEGEFVQRLESLDCPPPIAVLDCAQAMTFSALQLFVERAMASHDSFELTDDELPLLIDICHRLDGIPLAIELAAAQVGNFGLPGLLTQLQSNFRVLTQPSQTPPARHQTLRATLDWSFELLSACEKTCLRRLSVFRGGFTLESAAAVIVGEHIEPREVFGSITQLVAKSLLNVEVGDEDVYYRLLDTTRSYALEKLAQTTDLPGTRERHAERCLATMQQAQDDWEKTSTGLWLERYGRALEDIRAALDWGLHGQGPQALAIRLAATSTPLWQELSLLKEHGGYVRKALALLEQSAEPCPRLQMALKLALGSACYHVQGGSSETVGAFVSARALARQLNDVAGQLRAISGHLAVNLSCGQYQMALEQSRQFDHLGLQDDAQMSLSMHRLRVLALHFSGNQHQAGEHAEQVLQRMAHSGHLNRFTHGFGVQYDQSVAALTLHARILWLQGQPEQAWRTARQALDIALQINHGTSICYTLALAGCLIAHYNGDTRSARELLRLLLQQARKHSVLLFHDWAQHYARVIGGTDVQPIGRQSVGLIKDIMVTLDSTCVDDDLLERAQSGVSDWSTAEILRARARTLLATDCPLQTATAETMLLKALNVAKAQGALTWELRSATSLAQLWQRQGDPQRAHQLLAPIYQRYTEGFATPDLMTVRRLLDELQCDLPA

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Crispr_ID: NZ_CP019398_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019398_4

2418248-2418340

Orphan

Consensus_repeat	Method
CTGTGGGAGCGAGCTTGCTCGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019398_4

>merge|NZ_CP019398|4|2418248-2418340|CRISPRCasFinder
CTGTGGGAGCGAGCTTGCTCGCGATGGCGGCCTCACAGTCGACCGAAATCTTGCGGATGTACTCAGTACCTGTGGGAGCGAGCTTGCTCGCGA

>NZ_CP019398|4|4|2418248-2418340|CRISPRCasFinder
CTGTGGGAGCGAGCTTGCTCGCGA	TGGCGGCCTCACAGTCGACCGAAATCTTGCGGATGTACTCAGTAC
CTGTGGGAGCGAGCTTGCTCGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019398.1\|WP_154862332.1\|2410679_2412113_+\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP019398.1\|WP_159389696.1\|2420622_2421960_+\|DUF1329-domain-containing-protein	unknown	unknown	gnl\|CDD\|377764
NZ_CP019398.1\|WP_159389703.1\|2431547_2432126_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019398.1\|WP_090456379.1\|2417015_2417855_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP019398.1\|WP_159390387.1\|2416000_2416918_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP019398.1\|WP_159389694.1\|2413856_2414897_-\|AraC-family-transcriptional-regulator-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|378890
NZ_CP019398.1\|WP_150815127.1\|2418784_2420611_+\|DUF1302-family-protein	unknown	unknown	gnl\|CDD\|377751
NZ_CP019398.1\|WP_154862330.1\|2407999_2409115_+\|SCO-family-protein	unknown	unknown	gnl\|CDD\|239266
NZ_CP019398.1\|WP_159389702.1\|2430341_2431415_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|227908
NZ_CP019398.1\|WP_159389701.1\|2427880_2430352_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|226957
NZ_CP019398.1\|WP_150815247.1\|2409217_2410711_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236674
NZ_CP019398.1\|WP_159389695.1\|2414968_2415883_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP019398.1\|WP_150815245.1\|2406369_2407815_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP019398.1\|WP_159389699.1\|2425099_2427073_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224926
NZ_CP019398.1\|WP_159389697.1\|2422123_2423473_+\|DUF1254-domain-containing-protein	unknown	unknown	gnl\|CDD\|227659
NZ_CP019398.1\|WP_159389698.1\|2423469_2424855_+\|DUF1254-domain-containing-protein	unknown	unknown	gnl\|CDD\|227659
NZ_CP019398.1\|WP_154947890.1\|2412116_2412494_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019398.1\|WP_159389704.1\|2432487_2433882_-\|DUF1338-family-protein	unknown	unknown	gnl\|CDD\|319958
NZ_CP019398.1\|WP_159389700.1\|2427210_2427879_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP019398.1\|WP_154862333.1\|2412665_2413472_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312

Protein	Function_ID	Function_description	E-value
NZ_CP019398.1\|WP_154862332.1\|2410679_2412113_+\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.47285e-169
NZ_CP019398.1\|WP_159389696.1\|2420622_2421960_+\|DUF1329-domain-containing-protein	gnl\|CDD\|377764	pfam07044, DUF1329, Protein of unknown function (DUF1329). This family consists of several hypothetical bacterial proteins of around 475 residues in length. The majority of family members are from Pseudomonas species but the family also contains sequences from Shewanella oneidensis and Thauera aromatica.	0
NZ_CP019398.1\|WP_090456379.1\|2417015_2417855_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	3.18007e-13
NZ_CP019398.1\|WP_159390387.1\|2416000_2416918_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	5.99907e-37
NZ_CP019398.1\|WP_159389694.1\|2413856_2414897_-\|AraC-family-transcriptional-regulator-ligand-binding-domain-containing-protein	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	3.86992e-12
NZ_CP019398.1\|WP_150815127.1\|2418784_2420611_+\|DUF1302-family-protein	gnl\|CDD\|377751	pfam06980, DUF1302, Protein of unknown function (DUF1302). This family contains a number of hypothetical bacterial proteins of unknown function that are approximately 600 residues long. Most family members seem to be from Pseudomonas.	0
NZ_CP019398.1\|WP_154862330.1\|2407999_2409115_+\|SCO-family-protein	gnl\|CDD\|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	1.18973e-41
NZ_CP019398.1\|WP_159389702.1\|2430341_2431415_+\|iron-ABC-transporter-permease	gnl\|CDD\|227908	COG5621, COG5621, Predicted secreted hydrolase [General function prediction only].	1.9829e-129
NZ_CP019398.1\|WP_159389701.1\|2427880_2430352_+\|FtsX-like-permease-family-protein	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	1.61758e-13
NZ_CP019398.1\|WP_150815247.1\|2409217_2410711_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|236674	PRK10364, PRK10364, two-component system sensor histidine kinase ZraS.	1.08084e-37
NZ_CP019398.1\|WP_159389695.1\|2414968_2415883_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.66565e-19
NZ_CP019398.1\|WP_150815245.1\|2406369_2407815_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.32749e-38
NZ_CP019398.1\|WP_159389699.1\|2425099_2427073_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224926	COG2015, COG2015, Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism].	0
NZ_CP019398.1\|WP_159389697.1\|2422123_2423473_+\|DUF1254-domain-containing-protein	gnl\|CDD\|227659	COG5361, COG5361, Uncharacterized conserved protein [Function unknown].	2.39985e-78
NZ_CP019398.1\|WP_159389698.1\|2423469_2424855_+\|DUF1254-domain-containing-protein	gnl\|CDD\|227659	COG5361, COG5361, Uncharacterized conserved protein [Function unknown].	2.91552e-74
NZ_CP019398.1\|WP_159389704.1\|2432487_2433882_-\|DUF1338-family-protein	gnl\|CDD\|319958	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	0
NZ_CP019398.1\|WP_159389700.1\|2427210_2427879_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.33063e-80
NZ_CP019398.1\|WP_154862333.1\|2412665_2413472_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	5.98825e-18

>NZ_CP019398.1|WP_090456379.1|2417015_2417855_+|AraC-family-transcriptional-regulator
MTSQPFISSAFTRTILSHARQSGLCQDQLLQRAGICQSLLEGQDLHVPAHLVERLWNECERAGAGVSFGCELVNGMATTTLRGLNILLDSAATLRASLACFTDFLPRVTNYVVAELEEGDGQARLHLRSVDQPPHFFGLDAATLTLVRNIARRLGRAPAEVFVAVHLTPQQAAGQWLRSMGVEVLEGSHPCLSLPAASLDEPLLGANGFLHQSMLRHWQTAAAQHTRSDSLELARHWLTAGDQPIERIAERLGYRQPSNFIRAFRKQFGITPKQFRLGL
>NZ_CP019398.1|WP_159390387.1|2416000_2416918_-|LysR-family-transcriptional-regulator
MDLRQLRHLVALADYRNFGRAAEAINLSQPAFSRSIQTLERDLDCALVERSSREFRLTGQGQLVLQHARRLLAGSQALQNELTQYNGLTGGELHFGCGPYPAQVLVPEALAEFIQAHPAIRISFHQGDWEQLAVWLREQQIEFLVADARYFTGDPQYQVQLLRPRRGRFFCRVGHPLVQQQNLYLRALLDYAVVGTRIPPMIRKILADVQGEADFNPSVECAQFDAIRRVVMRSDAVGIATMEALAELVDQGLIRLLEFTDVPKEDPGLQLHYGIVSRAGHSLTPAALAMVEAVLTVDQRLLASN
>NZ_CP019398.1|WP_159389695.1|2414968_2415883_+|LysR-family-transcriptional-regulator
MLDLRQLDLNLLLAFDAIYQQRSVTRAAEVMCLSQPAMSNALRRLRELCGDPLFIKSRLGVTPTLVAHRLADYVRAALESLRDGLRMIPAARQNNPLLRVSCLDCLQPVLLDALLESPHADWQVRYFQPRRRDALQDLASGKLDILIDLDQPLAGLAGLHKQALPADHYVFAYGAALKEPPRTLQEYLEQPQIQVSSRRDGLSPVDLQLGLKGLRRNVAMSTQSTLAAKLIADRQPFGISLPSRVANVLGLQHVPLPLDEPVELKLALYIESRYRFERSREEAMHCLLRALGEPRALQSLARRA
>NZ_CP019398.1|WP_159389694.1|2413856_2414897_-|AraC-family-transcriptional-regulator-ligand-binding-domain-containing-protein
MTKSDQPLRDQSIPNAFYAPTLLPAIEELLARGVDRDSIEGLFRRSLFELRTPFMRIPLFMSRRFWAFALEQTGDPLIGLAAGRRFVSTATNGLTYLFDVADSLDSACQYFVRFFPFFNGHFHARIVRGDDSVQLHLLDRGSVKSSAATADYILISLCSMLRRKFLASGLERDPVLGVGLVGACTTNAQEHQQAFRAPVQWGQAQHSIRLDPQLFVIPLTPGNHELEHTLIELLEQTRRNSEPTLLEQVCDHLIGNLAEANWQQFCTTQHVLERTAARRLKALGWSFSELLDEYRRYRAEDFLQGTDLELVEISDRLGYSDVQSFNRACLRWLGCAPGAWRTRQGQ
>NZ_CP019398.1|WP_154862333.1|2412665_2413472_+|methyltransferase-domain-containing-protein
MELPTKEQAIASNREAWNDSARHHKDSSEWQALLKGVEHADFSCLDDTLTALLTQTGIDGKDVVQLGCNNGRESLSLFAMGARSVVGVDQSEAFLGQARELASRSPHAPQFIEADIHHLPAGLQERFDLALITIGVLNWMPDIGEFFRHVARTLKPGGALVVYETHPFLEMFDPEAADPFRPASSYFRREPFVQHEPIVYEGRIEQPAAPSYWFAHTLGDLFSAAIAAGLQIRHFREYPHSNREELYDRYQQQAAQLPLCFTWVVVKG
>NZ_CP019398.1|WP_154947890.1|2412116_2412494_-|hypothetical-protein
MKKTDLTLLLAVCLGATAVVHADDMPTTNYSSEFNYYGADQPFAHPVPPSMNIVPPGSYIPTAPGEFIPVSSEHVFSDSRLPTVADATVRVFIRSYDPERGVYVNQEVENPSCMLSCLRQGPVLQ
>NZ_CP019398.1|WP_154862332.1|2410679_2412113_+|sigma-54-interacting-transcriptional-regulator
MEHSILLVEDDEILAENIQTYLERKDFEVTVCHSAEDALEQLGSFAPDVVLTDNSLPGMSGHDLIQKLRISAPDLKVIMMTGYGNVEDAVVAMKEGAFHYVTKPVALPELKLLLDKALATDRMERTLSFYQEREAQKSGVQALIGESAPMAYLKGTITQLLDAERRMANSDLPPVLVEGETGTGKELVARALHFDGPRAKGPFIEFNCASIPSNLVESELFGHEKGAFTDAKDRRMGLVEAADGGTLFLDEIGEMDLLLQAKLLKLLEDRTIRRVGSVKERKVDLRVISATNCNLEQMVQQGKFRRDLFFRLRIISIKVPRLYTRGADILLLARHFLGLHGKRYGKPNLHFSNQAEDLLLSYSWPGNVRELRNMLEQTVLLAQSDTIAAHQLNVCLSLMDEPPMFHHEPSHFSEPRPSFSGSDSMNLPEVERDMVRKMLDKTDWNVTKSARLLGLSRDMLRYRIEKLGLARPDKRQW
>NZ_CP019398.1|WP_150815247.1|2409217_2410711_+|two-component-sensor-histidine-kinase
MQILEQQKVAAPQAPVAQRKGWRPQFNLLRWFSLASFLIIAVVALGLGYISTRFVVDESIERDSMLTAQFIQSIGEAEIRHAGIAPGRTMGEMLDPRMDDAYPDVNPVSRAAARVEFLDHVKHLPDILLATVYSLDRTVVWSTNPELIGVRIEGDFELDESFEMKSPVSTSYHEIDEERPEQRLLREPEYLFVENYIPMFNADRSKVIAMVEIYKEPVDLVARIQRGFKAIWLATLIGGAAIYLGLFWIVRRAATLLQSQQKQLIANETFVALGEMSSAVAHSLRNPLANIRSSAELAQDIASQTAQKNIGDIISQVDRMSRWVRELLVSLRPMNDDCETVDLVLALEDTLSAFESLIKRSDVEVRFSPVSVPPVVSQQVLLTQILNSLFANALEAMPKGGVLTIEIDSSVSGDVRMTLTDTGKGMSKQQQQMVFKPFFTTKQGGLGVGLALVKRIMERFDGSVELTSREQEGTRVCLNFKVATGGVYGAQHSAGRG
>NZ_CP019398.1|WP_154862330.1|2407999_2409115_+|SCO-family-protein
MEKKEMHSPRSRALGMHLVLMLVTGLLASQLLVASQPTSTPAPAPASTAEPAVVEAVTPWGADYFPNTLLTDQDGQQLRFFDDLIKDKVVVINFIFTSCSDSCPLETARMRQVQKLLGDRVGKDIFFYSISIDPLSDTPEVLKAYAQRFQVGPGWKFLTGEFADVTDLRKKLGLFIEGVDNGRNKDHNLSLIVGNQATGRWMKASPFENPWILADQLANTLHNWKQPSVEESYVEAPEIRPPSNGEELFRTRCASCHSLGPLDGQGIGLRSIGPDLIGVTYQRDQAWLIRWIREPDRMLAEKDPIAMELFERYNRISMPNLRLDTRSAQSLIDFLKEETDRQHPPAAPLASGNEEPEQHHSVAHPETPRVQ
>NZ_CP019398.1|WP_150815245.1|2406369_2407815_+|HAMP-domain-containing-histidine-kinase
MTTIAKVLATDSEVRLNTRKEPFNLLRWFSLVSMLVIGTVAVALGAVSTRFVITESVQRDALLTSQFIQAIASAEVHHVSIPNVRTMGELLDPRKDMDFPDVDPLTRASARGEFLDHIANLPDVILVNIYAPDRMVIWSTNPALMGIAINGNEDLDRAFNSKISVSTAYHGVDRSRMEQKFLEPPKYAFIENYIPLFDADGSTVTAMVEIYKEPQDLIDRMERGLVLIWLATALGGGLIYLGLYWIVRRAAILLATQQKQLITNETFVALGEVSSAVAHGLRNPLANIRSSAELAIEFDSGPAHGNINDIIGQVDRMSTWVRELLQSLRPLNDEAEPVNLVAALHDSLMAYEHQINKAKVNVVFEPDQTPMVLSQHVQLTQLLNSLLSNAVEAMDGGGTLTIQIEPRDAQRVSVRVSDTGKGMSEEERTMAFRPFFTTKQGGLGVGLVLVERIMERFGGAVTLDSSEGEGTTVRLSFVLAP
>NZ_CP019398.1|WP_150815127.1|2418784_2420611_+|DUF1302-family-protein
MIKKRSATAGVRQRLHRLGHTRPQPLALAILAVLTGPTYATTFDLNEDWSLSTKTSLSLGSSWSTQNPDKSLMTRANALQAQGVNANGTSVSADDNRLNFKKGDPISQLFKGLTDISLDGQGQGAFIRFKYWYDHAYETGNGRFKDFDDSGWDDLSKFKGFEVLDAYVWKDFQVAEHPLNVKVGNQVLSWGEALLIQNGINVINPLDISAFNRPGVEIKEGQLPVEMVSFSFGLTDTTNLEGFYQYNWRPSVLDGCGTFFASSDVIQPGCGPLYLSQVQTDQQMQAAGLFATSRGNESPSDNGQFGFALRQMIPALNDAEAAIYYINYHSRLPYFTINARNTAVPGTFPGGIQGPSYAAAFPENIRLYGISLNGVEPVTGISLAGELSYRPNMPIAINAPDVNVAVISGPGGSSWLQLPPGFSTTNGSQFDAWERKGVWQLTGSATQAIDNVLGATRLSLFGEAGVVHIDDLGDERLGRNAAFGRSAPRNGTLCNTVASGVTNQYCTDKGFATDWSWGYRLRASLEYSDVLPGINLIPAVNWRHDVSGYSYDPQGPFQEGQQALGVSLTGVYMNDYSVELAYNTFFGSNDYSTLDDRDFASVSFKADF
>NZ_CP019398.1|WP_159389696.1|2420622_2421960_+|DUF1329-domain-containing-protein
MRMQLCVLALACTVGLAQAKGTDSAALGKTLTPMGSEMAANADGSIPAWTGGLASNAGTVDSKGGYSDPYAAEKPLFTVTAQNLTQYQKFLSPGQIALFKRFPDTYKMNIYSSHRSANLPKEVLAVSRENVAKTSMADGGNGLHDYARGIPFPLPTEGLEVMWNHMTRYRGGSYERISSAALVRENGATSYVRNQSLINFADTVGGLEPGSNILFMFKSRVLEPARLSGEAVLVHEPIDQVAEPRSAWQYLPGQRRVRRAPMIAYDNSARYSNGLITADNIDGYNGAPDRFDWKLVGKQELFIPYNSYKIGSRDLKYDAVIKPNHVNQDLARYEKHRVWVVEATLKPGARHIYAKRRFYVDEDSWQIAQSDQYDSRGELWRSGELHAIQQYDHGFTYNVLETSYDLISGRYYAGGLANEETEPMRVGFAAKTDDYTPSDLRRWAK
>NZ_CP019398.1|WP_159389697.1|2422123_2423473_+|DUF1254-domain-containing-protein
MRYWISALALGASLGTVHAATLDQQQAKDLAQEAYVFAYATVEHDKVLSAIAAKLPFNRLYSEPRLLGPQDNKVVSPNNDTFYSRALLDLRSEPVVLDVPAVQGRYYSFQLVDMRTDNLDYIGTRATGDKAGRYLIVGPDWKGPAPSGFSAVIRSPSRLVFLLGRTEVKGEADQKDAAQVLRGYALQPLSKVNGSAPPEPQAPLQLPAYTDTRHGPAQVLFSTFNALAPLHQWTASEQKKLARFAAIGVKPGAGFQAPADLNEAVAQGAEAGREQVRAASSRLSVEQQGWLPSPPNVGKFGDDDLTRAAVAWRYIYANDAVEALYPMALHDAKGQELNGQHAYRLHFPAGQLPPVNAFWSLTLYDGKTQLLVANPIQRYALGDRSPGLQYDADGGLTLILQADAPKAAPQGNWLPTPQGPFNLLLRLYLPKGGALDGSYQLPTIARIES
>NZ_CP019398.1|WP_159389698.1|2423469_2424855_+|DUF1254-domain-containing-protein
MNLIFSRRRLLGGMGILGASLMFPRRLLAGDSDDPRQIAKEAWIYAYPMLMHYQTMEKQALKPGAPEYVGGFNRFRHYSELFTPNNRDIVTPNNDTPYSWAWLDLRSEPQVLSVPAVPDDRYYVLQLVDQYTHNFAYVGVLSTGRDAGNYLIAGPHWQGPTPDGVKAVLRSETEIVMVLGRTGLKNAGDLPAVRALQQQYGLRSLHEYIGSAPPVPAPAIDWRPWDSKTGLGLEFIPALNQILSLCPTQPSEQALRARFARIGIVPGQGFDPATLPPATRQALLAGIEDAQAQLQIAVSQVRTTLGLFGTREALNGNYLNRAVAANVGIYGNSVEEAFYTGTRLDNQGQPLQGGRSYRLRFAAGQLPPASEFWSLTLYDLPDRQLVANPINRYCLSSRDQLQEDADGGLTLILQNVAPPEQSNWLPTPANGAFTLVLRLYGPGQQVVNQHWKMPVVEVVSA
>NZ_CP019398.1|WP_159389699.1|2425099_2427073_-|MBL-fold-metallo-hydrolase
MPRFTLSPRGLLACLITACLTQSVVAADEPVAASPQTTASNAAVLQQLPFTDRTDYESVTKGLIAPFKGQVKDASGKVIWDIQAYDFLAKDQAPESVNPSLWRLAQLSAHAGLFEVSPRLYQVRGLDLANMTIIEGDDGLIIIDPLTMAETAKAALDLYYQNRPRKPVVAVIYSHTHVDHFGGVRGVIDEADVKAGKVKVFAPAGFMEHVMSENVYAGNAMSRRAQFQFGSLLPRGEKGQVDAGLGKSTPSGGTVTLIPPTDLIDQELQTRTIAGLEVEFQLTPGTEAPAEMNLYLPQLRALCMAENATQMMHNILTPRGAQVRDAKAWAEYLDASLARYGDKSDVLFAQHNWPTWGGERIRTFLADQRDMYAFLNDRTLHLLNQGLTPLEIADSIKKLPGNLDQKWYTRGYYGSLSFNTRAVYQRYMGFYDGNPANLNPLPPVETAKRSVEAMGGEAAVLEKMQAAMAKGEYRWAAQLGNQVLFANPDNGDARKAQAQALEQMGYQSENATWRNMYLTGAMELRNGVPPHAGTSVSVDMVRAMSPQMFFDFLAVRLDSEKAVGHDLTLNWTFDDLSKDFNLTLRNGVLTHRAGLNAQADASVTMSKATLEQISLKQLDIPTAIQKGLIKLQGNGKKLGELMSSLDTFAPQFNIVTP
>NZ_CP019398.1|WP_159389700.1|2427210_2427879_+|ATP-binding-cassette-domain-containing-protein
MLEVHGVFKSYATPQGPLPVLQGVDLTLRPGSSLALMGESGSGKSTLLHLIAGLDKVDRGSIRSGAHCLEQMNEGQLANWRRTEIGLVFQQFNLIGSLRVEDNLAIQARLAGRHDPRWQAHLVRRLGLGELLRRYPEQLSGGQQQRVALGRALASRPPLLLADEPTGSLDETTGAEVLQLLLELLDDSPTSLLMVTHSPGVAARLAEKALLCGGRLAAAGER
>NZ_CP019398.1|WP_159389701.1|2427880_2430352_+|FtsX-like-permease-family-protein
MRIFGETLRALLSHWRQHPVQFFSVLTGLWLATSLLTGVQALNSQARDSYARASQLIGGEPQASLGAPGGGTFPQQWFIDLRRAGWPVSPVLQGRVTLKGHEEQRLQLMGIEPVSLPTGAAVAGQALAIEQVVGFFSPPGSTWISSQTLQALGLREGDRPLNLAGVALPPLHVQADMAPGVLLVDIGFAQQILGLPQQLSRLLLPKDFTAPLPEPFKGQLQLKRAGEENNLRRLTESFHLNLDALGVLSFVVGLFIVHAAIGLALEQRRSLLRTLRACGVSARMLMACLAVELGGLALIGGMAGVVSGYLLAGVLLPDVAASLRGLYGAEVAGQLSLGLSWWFSGIGLSLIGALLAGANSLLRAARLPLLALADPQAWHQAHARWLRRQGWVAAMAGMIALLALIFGHSLISGFVLMAALLIGAALALPVVLSALLSLVSQRSRSVLGQWFVADCRQQLPALSLALMALLLAMAANIGAGSMTAGFRQTFSDWLEQRLTAELYLNPQNPAQARELNSWLNQQPQLAAVLPNWQVSIQLQGWPTDLSGIIDHPTYRQHWPLLEALGDNPWERLAKDDAVMLSEQLARRLRVQLGDHLTLPTPTGPWSPRIVGIYADYGNPKGHILVNIRHLLRGWPQLTPNRFNLRIDPASIPAFVTALQARFTLDDSRIVDQARLKGWSTQVFERTFAATAALNSLTLCVAGVALFISLLTQSQSRLGQLAPLWALGVTRRHLMLLNLGQTWLLAILTLVLALPLGIALAWCLDAVINVQAFGWRLPLRVFPLQLLQLMGLALVATLLASAWPLYRLYRTQPADLLRTFAHED
>NZ_CP019398.1|WP_159389702.1|2430341_2431415_+|iron-ABC-transporter-permease
MKIKVGVLLLALLASGCDQPAPVEKGFAGLGNQAAAFTPVVPGRVFSFPADHGPHEGFRIEWWYVTANLKDDQGHEFGAQWTLFRSALKATPEVLGWQNQTIWLGHAAVTSATAHHAAERYARGGVGQAGVSVAPFNAWIDDWQLSSQATADDPLADLQLSASDRRFSYRLRLTSTGPLVLQGDRGFSQKSEQGQASYYYSQPFFQASGTLDIDGKTFQVSGPAWLDREWSSQPLTSNQTGWDWFSLHLDSGEQVMLYRMRQKDGEPYLTGTWIDARGQTQLLHARDISLTPQDTARVAGREMPIRWSIKIPARHLDITIAALNPQAWMDLRIPYWEGPVRLSGSHAGQGYLEMTGY
>NZ_CP019398.1|WP_159389703.1|2431547_2432126_+|hypothetical-protein
MKSHALSKAITLATLLSVASFGAVAAELPLSEVVVVDQVTTKVVSVDTANHSVVLKGPQGNEFPVQLTDKAKNLDNLKAGDTVEIRVTSAVAAFLDTDVDKGLPGTAEATGEMRTAPGSPNPGGEAYRQVKVQLKITSIDLKKNQVTFENPEGKSKTVDVKRPEVQAKLKDLKVGQSVNVVYTDILTVTSKH
>NZ_CP019398.1|WP_159389704.1|2432487_2433882_-|DUF1338-family-protein
MNHPNFVSPDLIRQRFSKAMSDMYREEVPLYGALMELVEQSNRHVLDNDAKILRQLTSTGEIERLDLERHGAIRVGTADELATLARLFAVMGMQPVGYYDLTPAGVPVHSTAFRAVHEASLQVSPFRVFTSLLRLELIEDLELRAFAQSMLDQRSIFTPTALTLIERAESRGGLTEQQALDFVEQALETFRWHHSATVTAEQYQQLSAQHRLIADVVAFKGPHINHLTPRTLDIDIVQAQMPAHGITPKAVIEGPPRRQCPILLRQTSFKALDEPIAFTDQSEARGSHSARFGEIEQRGAALTPKGRALYDRLLNAARDELKDFPNEANAARYNALMEQHFSEFPDTWEGMRQQGLAYFRYFVTEKGLAAGDLKNAPLEDLLSDGYLRVEPLVYEDFLPVSAAGIFQSNLGDAAQTRYGAHANQQAFEQALGRSTIDELELYAESQRRSIEQCFAALADVASSQ

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Crispr_ID: NZ_CP019398_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019398_5

3798065-3798578

Orphan

Consensus_repeat	Method
CGCCGCCATTGAGGACGTCGTTGCC	CRISPRCasFinder

7 spacers

The CRISPR arrays of NZ_CP019398_5

>merge|NZ_CP019398|5|3798065-3798578|CRISPRCasFinder
CGCCACCGGTGAGACTGTCCTGGCCACCTTCACCCATGATCAGATCGTTGCCGGCGCCGCCATTGAGCATGTCGTTGCCGGGGCCGGCGAACAGTTCGTCGTTGCCGTCTTCGCCGAAGATCTGGTCATTGCCGTCGCCGCCGAAGAAGTCGTCGTTGCCCACGCCGCCATTGAGGACGTCGTTGCCGTCGTCGCCGTCGAGGGTGTCGTTGCCTTCGCCGCCATTGACGACGTCGTTGCCAGCGCCGCCGGACAGGGTGGTGTCGTTGCCGGCGCCACCGTTGATGATGTCGTTGCCCTCATTGCCGGTCAGAAGGTCGCGGTCGGCGCCACCATTGATAATGTCATTGCCGGTGCCGCCGGAGATCCGGTCGATGCCCGCGTCACCGTTCAGAGTATCGTTACCGTCGCCGCCATTGATGATGTCGTTGCCGCCATTGCCGTTGATCACATCGCCGCCGCCCAGGCCGAAGATGGTGTCGGGATCGTTGGTGCCATTGATCACGTCGCCGCC

>NZ_CP019398|5|5|3798065-3798578|CRISPRCasFinder
CGCCACCGGTGAGACTGTCCTGGCC	ACCTTCACCCATGATCAGATCGTTGCCGG
CGCCGCCATTGAGCATGTCGTTGCC	GGGGCCGGCGAACAGTTCGTCGTTGCCGTCTTCGCCGAAGATCTGGTCATTGCCGT
CGCCGCCGAAGAAGTCGTCGTTGCC	CACGCCGCCATTGAGGACGTCGTTGCCGT
CGTCGCCGTCGAGGGTGTCGTTGCC	TTCGCCGCCATTGACGACGTCGTTGCCAGCGCCGCCGGACAGGGTGGTGTCGTTGCCGG
CGCCACCGTTGATGATGTCGTTGCC	CTCATTGCCGGTCAGAAGGTCGCGGTCGG
CGCCACCATTGATAATGTCATTGCC	GGTGCCGCCGGAGATCCGGTCGATGCCCGCGTCACCGTTCAGAGTATCGTTACCGT
CGCCGCCATTGATGATGTCGTTGCC	GCCATTGCCGTTGATCACATCGCCGCCGCCCAGGCCGAAGATGGTGTCGGGATCGT
TGGTGCCATTGATCACGTCGCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019398.1\|WP_154862025.1\|3799553_3800015_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226290
NZ_CP019398.1\|WP_159390212.1\|3809695_3810580_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176149
NZ_CP019398.1\|WP_154862022.1\|3793373_3794141_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NZ_CP019398.1\|WP_154862028.1\|3801973_3802609_+\|TetR-family-transcriptional-regulator-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|132427
NZ_CP019398.1\|WP_154862019.1\|3789455_3790634_+\|PLP-dependent-transferase	unknown	unknown	gnl\|CDD\|223699
NZ_CP019398.1\|WP_154862075.1\|3794710_3795526_+\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143600
NZ_CP019398.1\|WP_003201555.1\|3786034_3786445_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|223329
NZ_CP019398.1\|WP_174245524.1\|3786444_3787806_-\|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|274942
NZ_CP019398.1\|WP_154862031.1\|3807975_3809418_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP019398.1\|WP_154862027.1\|3800843_3801860_-\|succinylglutamate-desuccinylase/aspartoacylase-family-protein	unknown	unknown	gnl\|CDD\|349468
NZ_CP019398.1\|WP_102671911.1\|3790910_3791762_+\|putative-selenate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|275346
NZ_CP019398.1\|WP_154862020.1\|3791758_3792556_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226164
NZ_CP019398.1\|WP_090456270.1\|3805045_3805828_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270419
NZ_CP019398.1\|WP_154862030.1\|3805855_3807859_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|226961
NZ_CP019398.1\|WP_090456244.1\|3788082_3789459_+\|pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|223110
NZ_CP019398.1\|WP_154862023.1\|3795656_3796757_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP019398.1\|WP_150814383.1\|3803472_3804171_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226634
NZ_CP019398.1\|WP_154862021.1\|3792549_3793377_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226165
NZ_CP019398.1\|WP_154862026.1\|3800278_3800647_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP019398.1\|WP_150814382.1\|3804176_3804890_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226670

Protein	Function_ID	Function_description	E-value
NZ_CP019398.1\|WP_154862025.1\|3799553_3800015_-\|hypothetical-protein	gnl\|CDD\|226290	COG3767, COG3767, Uncharacterized low-complexity protein [Function unknown].	3.45441e-11
NZ_CP019398.1\|WP_159390212.1\|3809695_3810580_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176149	cd08460, PBP2_DntR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.25028e-91
NZ_CP019398.1\|WP_154862022.1\|3793373_3794141_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	6.31471e-80
NZ_CP019398.1\|WP_154862028.1\|3801973_3802609_+\|TetR-family-transcriptional-regulator-C-terminal-domain-containing-protein	gnl\|CDD\|132427	TIGR03384, betaine_BetI, transcriptional repressor BetI. BetI is a DNA-binding transcriptional repressor of the bet (betaine) regulon. In sequence, it is related to TetR (pfam00440). Choline, through BetI, induces the expression of the betaine biosynthesis genes betA and betB by derepression. The choline porter gene betT is also part of this regulon in Escherichia coli. Note that a different transcriptional regulator, ArcA, controls the expression of bet regulon genes in response to oxygen, as BetA is an oxygen-dependent enzyme. [Regulatory functions, DNA interactions].	4.66301e-30
NZ_CP019398.1\|WP_154862019.1\|3789455_3790634_+\|PLP-dependent-transferase	gnl\|CDD\|223699	COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism].	0
NZ_CP019398.1\|WP_154862075.1\|3794710_3795526_+\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143600	cd07576, R-amidase_like, Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Native R-amidase however appears to be a monomer.	6.35043e-110
NZ_CP019398.1\|WP_003201555.1\|3786034_3786445_-\|RidA-family-protein	gnl\|CDD\|223329	COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis].	3.76991e-34
NZ_CP019398.1\|WP_174245524.1\|3786444_3787806_-\|NAD(P)-binding-domain-containing-protein	gnl\|CDD\|274942	TIGR04046, predicted_flavoprotein_involved_in_K+_transport, flavin-dependent oxidoreductase, MSMEG_0569 family. Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor.	2.30202e-127
NZ_CP019398.1\|WP_154862031.1\|3807975_3809418_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.90021e-48
NZ_CP019398.1\|WP_154862027.1\|3800843_3801860_-\|succinylglutamate-desuccinylase/aspartoacylase-family-protein	gnl\|CDD\|349468	cd06250, M14_PaAOTO_like, Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like subfamily; subgroup includes Pseudomonas aeruginosa AotO. An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding P. aeruginosa AotO was characterized as part of an operon encoding an arginine and ornithine transport system, however it is not essential for arginine and ornithine uptake.	6.26474e-72
NZ_CP019398.1\|WP_102671911.1\|3790910_3791762_+\|putative-selenate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|275346	TIGR04553, ABC_peri_selen, putative selenate ABC transporter periplasmic binding protein. Members of this family ABC transporter periplasmic binding proteins and represent one clade within a larger family that includes phosphate, phosphite, and phosphonate transporters. All members of the seed alignment occur near a gene for SelD, the selenium-activating protein needed to make selenocysteine or selenouridine. Context therefore suggests members should be able to transport selenate, although transporting other substrates as well (e.g. phosphonates) is possible. This model has no overlap with TIGR03431, whose members are found regularly with phosphonate catabolism operons.	3.90747e-134
NZ_CP019398.1\|WP_154862020.1\|3791758_3792556_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226164	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.59124e-91
NZ_CP019398.1\|WP_090456270.1\|3805045_3805828_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270419	cd13701, PBP2_ml15202_like, Substrate binding domain of ABC-type histidine/lysine/arginine/ornithine transporter-like; the type 2 periplasmic-binding protein fold. This group includes uncharacterized periplasmic substrate-binding protein similar to HisJ and LAO proteins which are involved in the ABC transport of histidine-, arginine, and lysine-arginine-ornithine amino acids. This group belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.65601e-97
NZ_CP019398.1\|WP_154862030.1\|3805855_3807859_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|226961	COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism].	1.40688e-147
NZ_CP019398.1\|WP_090456244.1\|3788082_3789459_+\|pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|223110	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism].	1.86371e-136
NZ_CP019398.1\|WP_154862023.1\|3795656_3796757_+\|extracellular-solute-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.68843e-146
NZ_CP019398.1\|WP_150814383.1\|3803472_3804171_-\|ABC-transporter-permease-subunit	gnl\|CDD\|226634	COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism].	3.0157e-67
NZ_CP019398.1\|WP_154862021.1\|3792549_3793377_+\|ABC-transporter-permease-subunit	gnl\|CDD\|226165	COG3639, COG3639, ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism].	4.67826e-64
NZ_CP019398.1\|WP_154862026.1\|3800278_3800647_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	0.00149946
NZ_CP019398.1\|WP_150814382.1\|3804176_3804890_-\|ABC-transporter-permease-subunit	gnl\|CDD\|226670	COG4215, ArtQ, ABC-type arginine transport system, permease component [Amino acid transport and metabolism].	1.01592e-74

>NZ_CP019398.1|WP_154862023.1|3795656_3796757_+|extracellular-solute-binding-protein
MNPKVGLQLVLASLLSTSILCTEASEPKMNIYSWYDFIAPDATKNFHEETGIKATYDSFDNADVMQSKLMAGRSGYDVVIATDGLLPNLIKAGVLKEIDRAQLSNYHHLNPDILAKLQANDPGNRYAVPYMWATTGIGYDANKVKSILGLDAPVNSWDLILKEENLAKLSQCGVAMLDAPGEIFPIVLHYLGLPYNSQNPEDFRKAEALLLKLRPYIRYFDSSKFSADLANGDVCVVLGWAGGVFGAQESSRLAGNGRKIIYSIPREGAPVWVENLVLLNDSPNPAEGMAFINYMLRPEVIAKSSNYLAYPNANKDATALVEENIRNNPDVYPSKQVLDTLFPLEPISLKMERVRTRLWSKIRTGS
>NZ_CP019398.1|WP_154862075.1|3794710_3795526_+|carbon-nitrogen-hydrolase-family-protein
MKIELVQLAGRDGDVVHNLGRTLEAIATCAADTDLLIFPETHLTGFVDAEQLASVAEPLDGPTLQAIEQLVRKRNVSVVVGIAENDGGIFYNTSVLVTPEGIALRYRKTHLWPSERGLFQPGDRYVTALWKGLRVGILICYDIELPESARALGQLGAELILVTNGNMDPYGPVHRTAIMARAQENQAFAVMVNRVGEGDDGLVFAGGSAVVNPLGQIMFEAGREECQQVVTLDLDQLKDSRRDYDYLNDRRLHLTGEQLEHTDGRRELLIP
>NZ_CP019398.1|WP_154862022.1|3793373_3794141_+|phosphonate-ABC-transporter,-permease-protein-PhnE
MNRLFNLLLILCICAAVVASFSYLSIDLGELTGSGNLKQMGAYVLRFLSPDLSTGHLQAIGRGAVETMAMSALGTLLAAVFGLVLALPAAGRFGWPLQSASRLVLNALRAIPELVWAALMVLAAGLGPNAGTLALAMHTTGVLGRLFAEALENTPPQPAEAIRLQGGNVVWAFCYGTLPNLFPQLLAYILYRWENNIRMASVLGFVGAGGLGQMLYVSLSLFQEAQASTVILAMLVLVFAVDGLSSWSRQRWVKA
>NZ_CP019398.1|WP_154862021.1|3792549_3793377_+|ABC-transporter-permease-subunit
MLTRDTRDPATLPRLLLSLLALALLWPGIHFSELDLGVLLQADSQSEMGRFVSAFWPPAHGEEFLQLLWQATLQTLAIATAGMALALLLAIPASLLASRALSLSAASRSGRPSALGRLLRWPVRGLLIFLRSVPEIVWALLFVRAVGLGPTAGVLAIAITYSGMLGKVYAEIFESVDQRPAHSLLQAGSSRLAAFCYGILPNVGAELLSYTVYRWECAIRASVVMGFVGAGGLGQQIDLSLRMFAGGEVASMLLTFFVLVLFADQISRLLRWRFA
>NZ_CP019398.1|WP_154862020.1|3791758_3792556_+|ATP-binding-cassette-domain-containing-protein
MTLHLNRVSITHGNGVRALHEVDLHIGAGEQVAIIGPSGAGKSSLLNVLATALRPDNGAVEVLGEHAWQLGARRRQQLRARIGLVHQAPPLPPRQRVVTAVLAGKLGQWGFAKSLLSLLHPVDVPGARAALLKLDLGDKLFAQCQQLSGGQLQRVGIARVLYQAPEVLLADEPVSAMDPVLAGHTLSVLCRHAREHQVTLVASLHAVELALAHFSRIIGLREGQILFDLPASDVDHDLLDKLYANEQLQSPPAPVAPLSLQIPRC
>NZ_CP019398.1|WP_102671911.1|3790910_3791762_+|putative-selenate-ABC-transporter-substrate-binding-protein
MLKRTLALAVGLSLSFSALLAQAADTLKVSAIPDEAPTELLRKFKPLGEYLEKQLGMKVEFVPVSDYPAVVEALATDRIDMAWLGGFTFVQARLKTGNAIPLVQREQDAQFTSKFITADPAVKSLADLKGKSFAFGSVSSTSGSLMPRYFMLQDGIKPETYFSRVGYSGAHDATVAWVQAGKVDAGVLNASVWEKLVKAGKVDTDKVKVFATTPAYFDYNWTVRGTLDPALAGKIKAAFLALDPANPEQKAILDLQAASRFIETKPENYKGIEEAARAADLLK
>NZ_CP019398.1|WP_154862019.1|3789455_3790634_+|PLP-dependent-transferase
MSQQDKSAPPQGFATRVIHAGQAPDPSTGALMPPIYANSTYLQQSPGVHKGLDYGRSHNPTRWALERCVADLEGGTRGFAFASGLATISTVLELLDAGSHIVSGNDLYGGTFRLFDKVRQRSAGHRFSFVDLTDLAAFEASLQDDTRMVMVETPSNPLLRLTDLSAIARTCRARGIICVADNTFASPWIQRPLELGFDIVLHSTTKYLNGHSDVIGGIAVVGQNAELAERLGFLQNAVGAIAGPFDAFLTLRGVKTLALRMERHCSNALELAQWLERQPQVSRVYYPGLPSHPQHELAQRQMRGFGGMISLDLNSDLAGTKRFLESVQIFALAESLGGVESLIEHPAIMTHATIPPDTRAELGIGDGLVRLSVGVEDVEDLRADLAQALARM
>NZ_CP019398.1|WP_090456244.1|3788082_3789459_+|pyridoxal-phosphate-dependent-enzyme
MTDNSRPAVLELIGNTPLVRVSRFDTGPCTLFLKLESQNPGGSIKDRIGLAMIDTAERDGRLRPGGTIVEATAGNTGLGLALVGRAKGYRVVLVVPDKMSTEKVLHLKAMGAEVHITRSDVGKGHPEYYQDVAARLAAEIPDAFFADQFNNPANPLAHECSTAPEIWAQTQHDVDAIVVGVGSAGTLTGLTRFFKRVQPDLEMVLADPVGSVMAEYSRGGTLPTPGSWAVEGIGEDFIPSIADLSSVRHAYSISDEESFDHARQLLRAEGILGGSSTGTLLAAALRYCREQTQPKRVVSFVCDTGTRYLSKVYNDQWMNDQGLLQRKHYGDLRDLIARRFEDGRVISVGPDDTLLTAFQRMRLADVSQLPVLVKGQQLVGVIDESDILLGVHEDVAHFRRAVSSAMTDKLQTLSPDATLAELEAELGRGLVAIIQDASGFHGLITRTDMLNHLRRSLP
>NZ_CP019398.1|WP_174245524.1|3786444_3787806_-|NAD(P)-binding-domain-containing-protein
MTDLNQTTFQKCTAMTVDKTEIDTLVVGAGQAGVAMSEHLSKLGVPHLVVERNRIAEAWRTGRWDSLVANGPAWHDRFPGLEFDGLDPDAFAGKEQVAEYFEAYARKFNAPIRTGVDVKKVERNTDRPGFTVETSDGVIEARHVVVATGPFQRPAIPPIAPQIAGIAQIHSAQYYNPQQLAEGAVLVVGAGSSGVQIADELQRSGKQVYLSVGAHDRPPRAYRNRDFCWWLGVLGEWDAEAMQPGKEHVTIAVSGARGGHTVDFRRLAHQGMTLVGLTQAFNGAMVSFENNLADNIQRGDENYLALLDKADAYIERNGLDLPLEPEARAMLADPDCVTNPILELDLLKAGVTTIIWATGYSTDYSWLKVDAFKENGKPQHQRGVSAEPGVYFVGLPWQSRRGSAFIWGVWHDAKHIADHIVKQHTYLNYRDATQRQAEAARAPIHKASLMGVR
>NZ_CP019398.1|WP_003201555.1|3786034_3786445_-|RidA-family-protein
MPTHTRIRMFNTKDTYPNQTLDNDLCQAVRAGNTVYVRGQVGTDFNGQLVGLGDPRAQAEQAMRNVKQLLEEAGSDLSHIVKTTTYLIDPRYREPVYQEVGKWLKGVFPISTGLVVSALGQPQWLMEIDVIAVIPE
>NZ_CP019398.1|WP_154862025.1|3799553_3800015_-|hypothetical-protein
MSRIQSNKTRIGLLAVALVGGINFASTAFSAEALPQGYQLASAEKTSEGKCGEGKCGASEAGAQKTQAEGKCGEGKCGDASFARTDTDDDGRVSLKELLAVAPKGTEEFKAMDTNGDGFLSEGEVYKFRTNQYISNGKKVPTELFTKLSQAKD
>NZ_CP019398.1|WP_154862026.1|3800278_3800647_+|type-1-fimbrial-protein
MNGKRIAAGLSLLFALSGACLAAPGTIRFQGSIVEPGCQSRVGTHGTFGLYQCPAQSRAMGIEANTIAPTANVVAVGQSSVNVKLLADSGREGRYFDQQYVLVDDAGSPVRSGSYLITLSIP
>NZ_CP019398.1|WP_154862027.1|3800843_3801860_-|succinylglutamate-desuccinylase/aspartoacylase-family-protein
MPQDISFSVRNNNGDAVRVGAWRYAGDGSGPNVHLQAGVHADEIAGMLVLHLLMQRLHTAETQGRLKGNITVVPQANPLGIGQFRQGRILGRYHDATGHNFNRSFDQSAAMARPSTCVQQWQKKLVQLAATADVMLDLHTDDEALPYLYVHRSFWPRGRELAAAMKMDVAIIWDDGGDGSFEETIIAPWIRDGVTAGRMAATLELRGQGDVSDRFAEQDAAGLYNWLCGCGVIDESVAPAEWPVEAVEMGHMETILAPQPGVLIFEKELGDFVEEGQRFARILRTPGDPSSEVVLHAEQAGRLVTRYRDRLIPQGMGVAKFTGSRVSRNWSGGLLDPN
>NZ_CP019398.1|WP_154862028.1|3801973_3802609_+|TetR-family-transcriptional-regulator-C-terminal-domain-containing-protein
MTTDAPKNRRAEPDDRREMLVAATLRCLGRDGHAGISVRRIATEAGVSVGLLNHHFGSIEALIADTYQRLANELTTALLQEIEQAQTPAQKIDAFLEGSFSPRVMDPQLLGVWVVFWSLIRHSEHVSQSHEKSYRAYLDLIRQLLDGLAASEGFVIHDTRLAAIGLSAMLDGLWLEWCLNPETFSAANGLHICRCWIKGLRHGAFSTDDIL
>NZ_CP019398.1|WP_150814383.1|3803472_3804171_-|ABC-transporter-permease-subunit
MIPAWIVEYAALLGRGLQTTLVILLVSSVFGYLLAVLVALARISKNKVIAKVSLFYTSVTRGTPLLIQIYIYYYGLGSLFAQFPLIRGSFLWPYLRDGYWYIVFALVVSMGAYVGEVIRGGLLAVPKGEMEAASAFGMTARQSLLRVRLPRALRLLLPTLAGETVMLLKSTALASTIAVIDLLGAANVVRAQTLQVYEPLLLVAAVYVCLTFLIEALFAFAERRGTPVRRSV
>NZ_CP019398.1|WP_150814382.1|3804176_3804890_-|ABC-transporter-permease-subunit
MPAMFDLINFTEQGWGSALLKGLWMTLQISAGAFVLGLAIGLVVACLKLGAPKPIAALMRGYTTLFRAVPELLLILLLYYVGSMLLNSLMTRLGYGVVNVSGPLAAIVVLGLVQGAYASEIFRAAIQAIPFGQIEAAKAFGLSGFGLFRRVTLPIMAPYAMAGMANLWINLIKDSALISVVGTNELLYTAKQGAGSTRHYLLFYLTAAALYYAVTLASNYLSGRLERRIRRWMPLAE
>NZ_CP019398.1|WP_090456270.1|3805045_3805828_-|transporter-substrate-binding-domain-containing-protein
MGNRRFANWLTGAACVLLAGMSAAQAQPIRFAVAAEPYPPYTEKQANGEWKGFEVDLIHKLCSEMKADCEIKEVAWDGIIPSLLAKKIDVIFSSMSVTEEREKQIAFSKAYYDSAIAVVGPKEASVKKYPDDLKGKIIGVQNSTVSASYLKTYYEKIADVKYYDTQDSANADLIAGRIDLMMADGTAMAAFIKTPDAKDLAYLGTVPYDPIFGKGVGAGLRKDDTELKAKLDKAIQELLASKDYDDLSQSYFGTSVKPAF
>NZ_CP019398.1|WP_154862030.1|3805855_3807859_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MRFSPFVERISGQGVAAWDIHYAANAAQRNGEDVIILSVGDPDFPTPDFITDAAIHALREGDTHYTEIAGRQALREVIAGRYSQLIDRELQATNVILTAGAQNALFATSMCLLGAGDEVIAFDPMYVTYEATLKASGATLVRVPCAADSGFRLDAAVLAKAITPRTRAIFFSNPNNPTGVVLGREELQAIADLAIAHDLWVVVDEVYESLAYEREHLSLAALPGMAERCVVIGSLSKSHAMTGWRIGWVVANEALVNHVETLVLSMLYGLPGFVMEAALKAVQSHDEVTHGMREIYRRRRDLVVSGLADCPGISVLNPDAGMFVLVDVRGTGLTSLEFAWRLLREAGVSVLDAAAFGEPAQGFVRLSFTLSDERLAQACQRIRGFVQVLNGEAPRPVIGTVTSTATVEPAAARTMIEVDGLHKRFGNIEVLKGVSLTAREGEVISLIGASGSGKSTLLRCINMLEVPDQGRILVDGESIHLNQNRPGAPLVSDAKQLVRIRSSLGMVFQNFNLWPHRTVLENLIEAPTQVLRESRAEATERAEALLERVGLAAKRNEYPAFLSGGQQQRVAIARALAMRPKVMLFDEPTSALDPELVGEVLRVIRSLAEEGRTMILVTHEMAFARDVSSKVAFLHQGLIEETGSPDEVFVHPRSERCRQFVNAHQTR
>NZ_CP019398.1|WP_154862031.1|3807975_3809418_-|MFS-transporter
MKSISIRGALASLSLSMLLSSLGTSIANVGLPTLAAALSASFQQVQWVVLAYLLAITALIVSVGRLGDIIGRRRLLLIGIAVFTVASFLCALAASLWLLIAARALQGIGAAIMMALTMALVSEAVPKAKMGSAMGLLGTMSAIGTSLGPTLGGFLIANLGWQAIFLVNVPLGVLAIGLAHRFLPKDCREKRVDRAVFDVLGTLVLVLTLLAYALAMTLGRGSFGPLNTALLLVAMVGAGVFVFVERTAESPLVRLTIFRNLQLSAGFAMSMLVTTVVMATLVVGPFYLTGALALNATSVGLVMSAGPLVAALAGVPAGRWVDGLGAHRSTTLGLIAMLTGACILPAVPTGFGAFGYIVPLVVITAGYALFQAANNTAVMSNIATPQRGVVSGLLGLSRNLGLITGASVMGAVFAFGSASNDVLQAQPEAIAQGMRLTFVVAAGLILVALAIGAVSKIVSRSPDRAVLKNGATVVKTTCLR
>NZ_CP019398.1|WP_159390212.1|3809695_3810580_+|LysR-family-transcriptional-regulator
MPDLNLLITLNVLLEEGSVARAAQRLRLSPSAMSRALARLRETTGDPLLVRAGRGLVPTPRALELRERVGALVQDAEAVLRPAEALDLNQLARTFTLRTSDGFVENFGPPLIARLHQEAPGVRLNFVQKLNKDSILLRDGSVDLETGVIGESTSPEVRTRMLFRDRFIGVVRKGHPLARGEMTAVRYAAARHILVSRRGHEKGVMDDALNELGLTRDIATIVAGFSSAIALARASDLVASVPQRHVGNLCQGMHCFALPFATPAITVSMLWHPRMDADPAHRWLRGCVWEVCSQ

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Crispr_ID: NZ_CP019398_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019398_6

5047889-5048071

Orphan

Consensus_repeat	Method
TCGGCTGTCAGGCCGCCTTCGCGAGCAAGCCCGCTCCCACAG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP019398_6

>merge|NZ_CP019398|6|5047889-5048071|PILER-CR
TCGACTGTCCCGCCGTCTTCGCGAGCAAGCCCGCTCCCACAGTTAGGCCGGGGGGCATCCGAGAGAAAATGGTCGGCTGACAGGCTGCCATCGCGGGCAAGCCCGCTCCCACAGGGACTGGGTACATCCGCGAAATACCTTTCGGCTGTCAGGCCGCCTTCGCGAGCAAGCCCGCTCCCACAG

>NZ_CP019398|6|1|5047889-5048071|PILER-CR
TCGACTGTCCCGCCGTCTTCGCGAGCAAGCCCGCTCCCACAG	TTAGGCCGGGGGGCATCCGAGAGAAAATGG
TCGGCTGACAGGCTGCCATCGCGGGCAAGCCCGCTCCCACAG	GGACTGGGTACATCCGCGAAATACCTT
TCGGCTGTCAGGCCGCCTTCGCGAGCAAGCCCGCTCCCACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019398.1\|WP_154860453.1\|5041124_5041973_-\|cache-domain-containing-protein	unknown	unknown	gnl\|CDD\|377967
NZ_CP019398.1\|WP_102671210.1\|5048732_5050784_+\|GGDEF-and-EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP019398.1\|WP_057713455.1\|5054107_5055172_+\|imelysin	unknown	unknown	gnl\|CDD\|226020
NZ_CP019398.1\|WP_150813349.1\|5057649_5060676_+\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|169983
NZ_CP019398.1\|WP_154860458.1\|5061089_5061803_-\|InaA-protein	unknown	unknown	gnl\|CDD\|182136
NZ_CP019398.1\|WP_057716567.1\|5061807_5062476_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP019398.1\|WP_154860451.1\|5038211_5039405_+\|4-hydroxybenzoate-3-monooxygenase	unknown	unknown	gnl\|CDD\|236198
NZ_CP019398.1\|WP_150813348.1\|5056487_5057636_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP019398.1\|WP_008022038.1\|5046423_5047020_+\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|182534
NZ_CP019398.1\|WP_090457509.1\|5047213_5047477_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019398.1\|WP_150813343.1\|5045248_5045650_+\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|226130
NZ_CP019398.1\|WP_154860454.1\|5042222_5043095_-\|ATPase	unknown	unknown	gnl\|CDD\|275056
NZ_CP019398.1\|WP_154860456.1\|5051025_5052375_+\|peptidase	unknown	unknown	gnl\|CDD\|226018
NZ_CP019398.1\|WP_154860452.1\|5039483_5041001_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|341045
NZ_CP019398.1\|WP_154860455.1\|5045656_5046259_+\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|224198
NZ_CP019398.1\|WP_057713451.1\|5062630_5063905_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP019398.1\|WP_154860457.1\|5052652_5054080_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|226019
NZ_CP019398.1\|WP_090457519.1\|5055186_5056287_+\|DUF1513-domain-containing-protein	unknown	unknown	gnl\|CDD\|226021
NZ_CP019398.1\|WP_057713462.1\|5044258_5045152_-\|LysR-family-transcriptional-regulator-ArgP	unknown	unknown	gnl\|CDD\|235144
NZ_CP019398.1\|WP_150813342.1\|5043211_5044204_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187552

Protein	Function_ID	Function_description	E-value
NZ_CP019398.1\|WP_154860453.1\|5041124_5041973_-\|cache-domain-containing-protein	gnl\|CDD\|377967	pfam08269, dCache_2, Cache domain. Double Cache domain 2 (dCache_2) may be a result of single Cache domain 2 (sCache_2) duplication.	1.08971e-09
NZ_CP019398.1\|WP_102671210.1\|5048732_5050784_+\|GGDEF-and-EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.98098e-115
NZ_CP019398.1\|WP_057713455.1\|5054107_5055172_+\|imelysin	gnl\|CDD\|226020	COG3489, COG3489, Predicted periplasmic lipoprotein [General function prediction only].	8.56837e-117
NZ_CP019398.1\|WP_150813349.1\|5057649_5060676_+\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|169983	PRK09579, PRK09579, multidrug efflux RND transporter permease subunit.	0
NZ_CP019398.1\|WP_154860458.1\|5061089_5061803_-\|InaA-protein	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	1.93132e-50
NZ_CP019398.1\|WP_057716567.1\|5061807_5062476_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.58548e-15
NZ_CP019398.1\|WP_154860451.1\|5038211_5039405_+\|4-hydroxybenzoate-3-monooxygenase	gnl\|CDD\|236198	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated.	0
NZ_CP019398.1\|WP_150813348.1\|5056487_5057636_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	3.41188e-80
NZ_CP019398.1\|WP_008022038.1\|5046423_5047020_+\|superoxide-dismutase	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.26134e-111
NZ_CP019398.1\|WP_057713462.1\|5044258_5045152_-\|LysR-family-transcriptional-regulator-ArgP	gnl\|CDD\|235144	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator.	7.46443e-156
NZ_CP019398.1\|WP_150813343.1\|5045248_5045650_+\|ACT-domain-containing-protein	gnl\|CDD\|226130	COG3602, COG3602, Uncharacterized protein conserved in bacteria [Function unknown].	1.48215e-58
NZ_CP019398.1\|WP_154860454.1\|5042222_5043095_-\|ATPase	gnl\|CDD\|275056	TIGR04211, hypothetical_protein, SH3 domain protein. Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.	8.84103e-10
NZ_CP019398.1\|WP_154860452.1\|5039483_5041001_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|341045	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including various Saccharomyces cerevisiae proteins such as azole resistance protein 1 (Azr1p), vacuolar basic amino acid transporter 1 (Vba1p), vacuolar basic amino acid transporter 5 (Vba5p), and Sge1p (also known as Nor1p, 10-N-nonyl acridine orange resistance protein, and crystal violet resistance protein). MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.00417e-67
NZ_CP019398.1\|WP_154860455.1\|5045656_5046259_+\|LysE-family-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	1.20871e-70
NZ_CP019398.1\|WP_057713451.1\|5062630_5063905_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.82995e-45
NZ_CP019398.1\|WP_154860457.1\|5052652_5054080_+\|c-type-cytochrome	gnl\|CDD\|226019	COG3488, COG3488, Predicted thiol oxidoreductase [Energy production and conversion].	0
NZ_CP019398.1\|WP_090457519.1\|5055186_5056287_+\|DUF1513-domain-containing-protein	gnl\|CDD\|226021	COG3490, COG3490, Uncharacterized protein conserved in bacteria [Function unknown].	4.00631e-153
NZ_CP019398.1\|WP_154860456.1\|5051025_5052375_+\|peptidase	gnl\|CDD\|226018	COG3487, IrpA, Uncharacterized iron-regulated protein [Inorganic ion transport and metabolism].	0
NZ_CP019398.1\|WP_150813342.1\|5043211_5044204_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187552	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs. Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.12641e-56

>NZ_CP019398.1|WP_090457509.1|5047213_5047477_-|hypothetical-protein
MDKLIPDPPCNTTKPYSPRTMFMIVPDMDTESLLAHACESLASANVMASDFATCLAGPQRNTALAISQIVMLAELAVNRALDNLDPQ
>NZ_CP019398.1|WP_008022038.1|5046423_5047020_+|superoxide-dismutase
MAFELPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEFEGKTLEEIVKTSSGGIFNNAAQVWNHTFYWNCLAPNAGGQPTGALAEAINAAFGSFDKFKEEFSKTSIGTFGSGWGWLVKKADGSLALASTIGAGNPLTNGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWNLVNWKFVAEQFEGKTFTA
>NZ_CP019398.1|WP_154860455.1|5045656_5046259_+|LysE-family-transporter
MWQSYVNGLLVAFGLIMAIGTQNAFVLAQSLRREHHLPVAALCVTCDALLVAAGVFGLATVLAQNPTLLAIARWGGAAFLLWYGSQALRRAFSKQSLEQGEGQTVRSLRAVMLSALAVTLLNPHVYLDTVLLIGSLGAQQTEPGAYVVGAASASLLWFFTLALGAAWLAPWLARPGTWRILDLMVAVMMFAVAFQLIAAI
>NZ_CP019398.1|WP_150813343.1|5045248_5045650_+|ACT-domain-containing-protein
MAGETSLATLLRSMSPQLNAGEYVFCTLRDGKLPTDLEIVGSFREQEGLTVILERSHAETAGFSFDYIAAWITLNVHSALEAVGLTAAFATALGKAGISCNVIAGYYHDHLFVGQADADRALQVLRDLAANAE
>NZ_CP019398.1|WP_057713462.1|5044258_5045152_-|LysR-family-transcriptional-regulator-ArgP
MFDYKLLSALAAVVEQAGFERAAQVLGLSQSAISQRIKLLEARVGQPVLVRATPPTPTEIGRRLLNHVQQVRLLERDLQSLVPALDEEGLPERLRIALNADSLATWWAQAVGAFCAEQHLLMDLVVEDQTVGLKRMRAGEVAACVCASERPVAGARSVLLGAMRYRALASPAFIARHFPQGVRADQLARTPALVFGPDDFLQHRYLASLGVEGGFEHHLCPSSEGFIRLAEAGLGWGLVPELQVREQLQRGVLQELLPDKPIDVPLYWHHWRNGGQLLGLLTDQLVSASKQWLVPLD
>NZ_CP019398.1|WP_150813342.1|5043211_5044204_-|NAD-dependent-epimerase/dehydratase-family-protein
MKILVTGASGFIGGRFARFALEQGLDVRVNGRRAESVEHLVRRGAEFIQGDLSDPELARELCSDVEAVVHCAGAVGLWGRYQDFHQGNVQVTENVVEACLKQRVRRLVHLSSPSIYFDGRDHLGLTEEQVPKRFKHPYAATKYLAEQKVFGAQEFGLETLALRPRFVTGAGDMSIFPRLLNMQRKGRLAIIGNGLNKVDFTSVQNLNEALLSSLLASGSALGKAYNISNGTPIPLWDVVNYVMRNMEVPQVTRYRSYGLAYSVAALNEGVCKLWPGRPEPTLSRLGMQVMNKNFTLDISRARHYLDYDPKVSLWTALDEFCGWWKAQAVR
>NZ_CP019398.1|WP_154860454.1|5042222_5043095_-|ATPase
MSMRNDANDDFDDVPSLRADVLDDDFAPTARTVVHSRTTPVVKVKAASTGALWALVGALFFAFAGLAWWSFQQISLMEQQLVATQESFARISEEAAGRLQDISGKVVASQTSVNTDSEALKLQIRQLESKLQDQNAQQQGVAGQASDLDKRLAQMTAQTTELDKRLAQLNAQNTEHQTANTQLQAQVKALSAELATLKSAPSDAEKLDAQLKSLGADITALKKQGNPSAAIERLEQDMIVLKSEQDNRPAVTPGSTNTAEFDAFRSQVTRNINTLQAQIQNLQQQLRARQ
>NZ_CP019398.1|WP_154860453.1|5041124_5041973_-|cache-domain-containing-protein
MGFLHRFALLCGMFLLCLGQAQAAGTEKDDSKAAIALLEKALAYYHQNGDKALAAFSRQGEFVDKDRYVFVLDTKGVMLASGGPSSALIGRDVSQVLGPDLQKAFKDALKVPEGNGIQQAEYRWQNWNDGKVERKHVYYQRVGQRILAVGYYLPRASAEQAMALLNKAATDLAKDEKGTLTAINSLKGGYLQDDLYVFVVDLDTQRYVAHGTNLRLINTDFSKIVDPEGKPVGEPILALMAQQDYGEYEYRWKNPVTGKVENKHAYLKKVGHFLVAVGYYSP
>NZ_CP019398.1|WP_154860452.1|5039483_5041001_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MTNLHQPETPKPAIRSVLIALMLAIFLGALDQTIVAVSMPAISAQFKDVSLLAWVISGYMVAMTVAVPIYGKLGDLYGRRKLMLFGMGLFTLASLFCGMAQSMEQLVLARIFQGIGAGGMISVSQAIIGDIVPPRERGRYQGYFSSMYAVASVAGPVLGGYMTEYLSWRWVFLINLPLGLGAWLVAYHTLVGLPIPQRKPIIDYLGTVLMIIGLTALLLGITQVGQGHSWRSAEVLALLACAVLVLGLFVVHERRAREPLLPMHLFANRNAILCWCTIFFTSFQAISLIVLMPLRFQSVTGAGADSAALHLLPLAMGLPIGAYFAGRRTSVTGRYKPMILTGAALMPVSIIGMAFSPPQAFVVSSLFMLLCGISSGMQFPTSLVGTQNSVDQQDIGVATSTTNLFRSLGGAVGVALMSALLLALLQDSSFAHLAGSSLIAEGSSGNVLLDGLNAAPGDAQNTLRAELSLTFRHLLTVSAAVSLLGLAAAIAMPNMLLRGREDKVR
>NZ_CP019398.1|WP_154860451.1|5038211_5039405_+|4-hydroxybenzoate-3-monooxygenase
MKTLKTQVAIIGAGPSGLLLGQLLHNAGIDNIVLERQTPDYVLGRIRAGVLEQGMVELLRQAGVSQRMDAEGLVHGGFELALDGRRVHIDLQALTGGKTVMIYGQTEVTRDLMAARREVGAQTIYQASNVVPHGMKTDEAFVTFEKDGEPYRLDCDYIAGCDGFHGVARQSIPADSLKVFERNYPFGWLGILADTPPVHEELVYARHERGFALCSMRSPTRTRYYLQVPAEENVEDWSDQRFWDELKNRLPVDLAQKLVTGPSIEKSIAPLRSFVVEPMQYGRMFLVGDAAHIVPPTGAKGLNLAASDVSTLFNILVKVYRDDRLDLLEKYSEICLRRVWKAERFSWWMTSMLHRFDDHDAFSQRIAESELDYFVDSQAGRKTIAENYVGLPYEAIE
>NZ_CP019398.1|WP_102671210.1|5048732_5050784_+|GGDEF-and-EAL-domain-containing-protein
MKLELKNSLSVKLLRVVLLSALIVGVVLSCAQIVFDAYKTRQAVASDAERILDMFRDPSTQAVYSLDREMGMQVIEGLFQDAAVRKASIGHPNEAMLAQKTRELQHSHSRWLTDLILGKERTFTTQLVGRGPYSEYYGDLSITLDTATYGQGFIVSSVIIFISGVLRALAMGLVLYLVYHWLLTKPLSRIIEHLTEINPDRPSEHKIPLLKGHENNELGIWINTANQLLESIERNTHLRHEAENSLVRMSQYDFLTGLPNRQQLQQQLDKILIDAGKLQRRVAVLCVGLDDFKGINEQFSYQTGDQLLLALADRLRGHSGRLGALARLGGDQFALVQADIEQPYEAAELAQSILDDLEAAFALDHQEIRLRATIGITLFPEDGNSTEKLLQKAEQTMTLAKTRSRNRYQFYIASVDTEMRRRRELEKDLRDALIRNQFYLVYQPQISYRDNRVVGVEALIRWQHPEHGMVPPDLFIPLAEQNGTIIAIGEWVLDQACKQLREWHDQGFSDLRMAVNLSTVQLHHAELPRVVNNLLQMYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIISEGCHEGQGYHYSKPLPARELGVYLKQAQRSNAAIF
>NZ_CP019398.1|WP_154860456.1|5051025_5052375_+|peptidase
MIRMPLATASLLAIAISLAGCGEGKDQEKAAAPAASTATAPAAPATAPAAAGKVDEAAAKAVVAHYADIVFAVYSDAESTAKTLQTAVDAFLAKPNADTLKAAKAAWVAARVPYLQSEVFRFGNTIVDDWEGQLNSWPLDEGLIDYVDKSYEHALGNPGATANIIANTQVQIGEDKVDVKDITPEKLASLNELGGSEANVATGYHAIEFLLWGQDLNGTGPGAGNRPASDYLEGKGATGGHNDRRRAYLKSVTQLLVSDLEEMVGNWKPNVADNYRATLEAEPAETGLRKMLFGMGSLSLGELAGERMKVSLEANSPEDEQDCFSDNTHNSHFYDAKGIRNVYLGEYTRVDGTKMTGASLSSLVAKADPAADTALKDDLAATEAKLQVMVDHANKGEHYDQLIAAGNTAGNQIVRDAIASLVKQTGSIEAAAGKLGIADLNPDNADHEF
>NZ_CP019398.1|WP_154860457.1|5052652_5054080_+|c-type-cytochrome
MPPLPLRLSALFLALGLSACDDAPKFTRAEPGEARSGGSATVRKTDQNAFSMPSANLPPSRRVDFSVGNSFFRSPWVIAPSTTTARDGLGPLFNTNACQGCHIKDGRGHPPTPDDVNAVSMLVRLSIPDAPAYAKVIEQLGVVPEPVYGGQFQDMSVPGVAPEGKVRVDYTPVPVRFKDGTEVELRKPSLNITQLGYGPMHPDTRFSARVAPPMIGLGLLEAIPEEAILANAEAQAKANKGISGRPNRVWDDALQKTVLGRFGWKAGQPNLNQQNVHAFSGDMGLTTSLRPLDDCTDAQTACKQAPSGNGPDGEPEVSDNILRLVLFYSRNLAVPARRDVNAPEVLAGKTLFYQAGCQSCHTPKYTTVANAAEPELANQVIRPYSDLLLHDMGDGLADNRSEFQASGREWRTPPLWGIGLTQAVSGHTQFLHDGRARNLLEAVLWHGGEATAAQQQVLSFNAEQRAALLAFLNSL
>NZ_CP019398.1|WP_057713455.1|5054107_5055172_+|imelysin
MFRPKLLFTSLAALALGACSPQDPQAVTSAAIAKSVILPTYTRWVEADRQLAVSALAYCEGKETLETARADFLHAQKAWAELQPLLIGPLAEGNRSWQVQFWPDKKNLVGRQVEQLVTAQPQIDAAALAKSSVVVQGLSAYEYILFDSKPDVANAEQKSKYCPLLIAIGERQKQLAEEILQTWNNTDGMLAQMSKFPNQRYADSHEAIADLLRVQVTAIDTLKKKLGTPMGRQSKGVPQPFQADAWRSQASLTSLEASLAAARTVWEGVDNKGLRGLLPSEQKPLADKIDAAYAASLKLFAGNQRSLTDMLNDEAGRQQLNELYDSLNVVHRLHEADLAKALGIQLGFNANDGD
>NZ_CP019398.1|WP_090457519.1|5055186_5056287_+|DUF1513-domain-containing-protein
MLRRQVLTLGSLLLGAVTLGGWKLFKQKDRSPLLLSARDDTDGQHYAVGYRLDGTQVFATRVGQRCHDIINHPTQPIALFVARRPGTESYLIDLRDGALLQTVVSQPNRHFYGHAVIHHSGDWLYATENDTSDPGRGLLGVYKFEGERLVHSGEISTHGLGPHQVSWMPDGETLVVANGGIRTEAESRVEMNLNAMEPSLVLMHRDGTLLSKETLAQQMNSVRHLAIASDGTIVASQQFMGAAHESSELLAIKRPGQPFVAFPVPEHQLQAMGHYTASVAVHSDLRLVALTAPRGNRFFIWDLDSGEVRLDAPLPDCAGVGAVADGFVVTSGQGRCRYYDCRQTNLVAKPLELPAGLWDNHLHLMA
>NZ_CP019398.1|WP_150813348.1|5056487_5057636_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MLRRRMLIMLGVVLLIVLVLAAYKAFSIYTMVQGFSAPRPAISVAVATAIERPWQARLPTVGTLKALQGVDLSLETDGTVIDLQFESGQKVKAGQPLLRLDSAVESALLETALADLGLAQLDYGRGSQLVGSQAISKGEFDRLSAVLKKSKATVNQLKAALGKKSIIAPFSGTIGIRQVDVGDYMASGTMIATLQDLSSLYVDFFVPEQSVPKIALGQPVQVIVAAYPTVEYPGTISAINPKVENSTRNVQVRATLANPDGKLMPGMFASLQVLLPDPQPRIVVPESAITYTLYGNSVYVAVPKKAEDGSLVKDDKGQPVLIAERRFVETGERRDGQVMITKGVQSGEKVVTAGQLKLDNGSRIAISDDKTLAGQNSQPRAD
>NZ_CP019398.1|WP_150813349.1|5057649_5060676_+|multidrug-efflux-RND-transporter-permease-subunit
MAFTDPFIRRPVLATVVSLLIVLLGFQAWSKLPLRQYPQMENALITVTTAYPGANAETIQGYITQPMQQSLASAEGIDYMTSVSRQNFSVISIYARVGSDSDRLFTELLAKANEVKNQLPQDAEDPVLSKESADASVLMYISYFSKELSNPQITDYLSRVIQPKLATLPGMAEAEILGNQVFAMRLWLDPMKLAGFGLSASDVTNAVRQYNFLSAAGEVKGEYVVTSINANTELKSAEAFGTIPLKVDGDSRVLLRDVARVEMGAENYDSISSFGGTPSVYIGIKATPGANPLEVIKEVRKIMPDLEAQLPPNLKGEIAYDATLFIQASIDEVVKTLFEAVLIVIVVVFLFLGALRSVVIPVVTIPLSMIGVMFFMQMMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKTPLEASIEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVVISGIVALTLSPMMCAFLLRHDENPSGLAHRLDMTFERLKRRYQSLLHGTLNTRPVVLVFAVIVLCLIPVLLNFTKSELAPDEDQGIIFMIANAPQPTNLDYLNTYTDEFVSIFKAFPEYYSSFQINGFNGVQSGIGGFLLKPWDERSRTQMAILPEVQAKLGKIPGLQIFGFNLPSLPGTGEGVPFQFVINSANDYELLLQVVDRIKIRAKESGKFAFVHVDLAFDKPEVVVDIDRAKAAQMGVSMQDLGGTLATLLGEGEINRFTIEGRSYKVIAQVERPFRDNPDWLNNYYVKNTKGELLALSTLITVTDRARPRQLNQFQQLNSAILSGVPLVSMGEAIDLVRQIAREEAPAGFAFDYAGASRQYVQEGSALWVTFALALAIIFLVLAAQFESFRDPLVILVTVPLSICGALIPLFLGWSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRKDKGLSAREAVEEAAAIRLRPVLMTTAAMVFGMVPLIIASGAGAVSRFDIGTVIATGMSIGTLFTLFVLPCVYTLLAKPDKP
>NZ_CP019398.1|WP_154860458.1|5061089_5061803_-|InaA-protein
MAVQCAAETEVVPQDRFDYFWNQRGEWVEEPNVRRGGESGVQRLMGSDGQLLYVKRQTGHIHRSLQHPFGRPTVMREHAALTGVTALGVRVPEIVFCGAQRDPVHKWRALLVTKSLDGFEEIDRWYAGGGRERHGEAINERVLKDLAENLARMHKGRWQHGCIYDKHVFVRVTGEGETAKVEVALIDLEKCRQRLTAHRAAVHDIKQLRRHSSFSDADWEKLIYFYETAFGSAIKGL
>NZ_CP019398.1|WP_057716567.1|5061807_5062476_-|class-I-SAM-dependent-methyltransferase
MDGPIKLDFSEKYDDQHAQRYLRKHQEGLGRRLSHWRDEQLARKALALVGEPGLVLDLPCGAGRFWPLLAEKSNRVIIGADNSPSMLKVATQAQPADVVKRVQPLHTSVFDIALPDNAVDSIFCMRLLHHIGEAKHRMAILREFERVSRDSVILSLWVDGNFKAWKRKRSEKTRGQEGYQNRFVLPAATVEKEFEQAGFRIQEQLDFLPLYAMWRVYVLRKR
>NZ_CP019398.1|WP_057713451.1|5062630_5063905_-|HAMP-domain-containing-histidine-kinase
MEFKQSLAQRIIIAFALMSALVAGAFAMGIVATVHLVEEKLISAGLGGDLQRLLLMDNVTDWSHRPEPDQLFYFSNGPGDFNLPKDLRHLEPGFHEVFRENLSYHAMVEIVDGRRYVLLQDQSDFEERERVLFAVVLVGFVLSLALAVFLGWVLARKVMAPVVRLARQVRHRDQLLGLAPPLAPDYAADEVGELAVAFDATLGRLRQALTRERLFTSDVSHELRTPLMILASSCELLLENPGLDQRGRAQVERIARACEEMRELVQTFLMLARAKREDNSMSPQQPLGQVAEGLVGLWRGPIESKGLKLIFEPGNPEAKGYNATLLHAVMGNLLRNALHYTERGFIRLSLTGTGFLVEDSGVGIPEEKREAMFEPFVRGTEKRGEGLGLGLSLVQRICENQGWSVSLTTMEPSGCRFQVELSRT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019398_5	5.1\|3798090\|29\|NZ_CP019398\|CRISPRCasFinder	3798090-3798118	29	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	1783805-1783833	4	0.862
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP045303	Azotobacter salinestris strain KACC 13899 plasmid unnamed1, complete sequence	271694-271722	4	0.862
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	110659-110687	4	0.862
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP051182	Thalassobius gelatinovorus strain NEB572 plasmid pAge77, complete sequence	58212-58240	4	0.862
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP051182	Thalassobius gelatinovorus strain NEB572 plasmid pAge77, complete sequence	64214-64242	4	0.862
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	1211092-1211120	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP010626	Phaeobacter inhibens strain P51 plasmid pP51_c, complete sequence	18203-18231	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1239916-1239944	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	647372-647400	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	396776-396804	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1242270-1242298	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	968859-968887	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	1613280-1613308	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	564255-564283	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NC_010997	Rhizobium etli CIAT 652 plasmid pC, complete sequence	898529-898557	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NC_010997	Rhizobium etli CIAT 652 plasmid pC, complete sequence	902020-902048	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	537491-537519	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1481369-1481397	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	532136-532164	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	532136-532164	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1422392-1422420	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	4279-4307	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1496336-1496364	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	1500214-1500242	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1674335-1674363	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	1241685-1241713	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1799639-1799667	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	1419824-1419852	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	498799-498827	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1940013-1940041	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	1503786-1503814	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	1213443-1213471	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1428638-1428666	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	1460564-1460592	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1425366-1425394	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	1604794-1604822	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1389350-1389378	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	1515267-1515295	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	1604761-1604789	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	1478998-1479026	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1513970-1513998	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	1603555-1603583	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1414102-1414130	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	1479310-1479338	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1513970-1513998	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	1603591-1603619	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	1478998-1479026	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1414748-1414776	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	1478201-1478229	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1513970-1513998	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1513970-1513998	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1513970-1513998	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	1603591-1603619	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	1603580-1603608	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1414124-1414152	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	1421385-1421413	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	1402038-1402066	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	1454982-1455010	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	1494172-1494200	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1511285-1511313	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	1603580-1603608	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1414124-1414152	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	1479309-1479337	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	1604581-1604609	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1414124-1414152	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1414124-1414152	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	1603591-1603619	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	1513973-1514001	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	1603602-1603630	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	1603403-1603431	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP012399	Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence	74333-74361	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NC_022043	Paracoccus aminophilus JCM 7686 plasmid pAMI5, complete sequence	123224-123252	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP017947	Bosea sp. Tri-49 plasmid unnamed1, complete sequence	33693-33721	5	0.828
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP018096	Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence	345872-345900	5	0.828
NZ_CP019398_5	5.1\|3798090\|29\|NZ_CP019398\|CRISPRCasFinder	3798090-3798118	29	NZ_CP010614	Phaeobacter inhibens strain P92 plasmid pP92_d, complete sequence	18420-18448	6	0.793
NZ_CP019398_5	5.1\|3798090\|29\|NZ_CP019398\|CRISPRCasFinder	3798090-3798118	29	NZ_CP010789	Phaeobacter gallaeciensis strain P63 plasmid pP63_e, complete sequence	18448-18476	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	1407945-1407973	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	169894-169922	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP012399	Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence	614982-615010	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	2237666-2237694	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP010702	Phaeobacter inhibens strain P24 plasmid pP24_f, complete sequence	18192-18220	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP025188	Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence	337733-337761	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP024582	Roseomonas sp. FDAARGOS_362 plasmid unnamed1, complete sequence	96181-96209	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	119351-119379	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP014802	Salipiger profundus strain JLT2016 plasmid pTPRO6, complete sequence	15394-15422	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP010671	Phaeobacter inhibens strain P57 plasmid pP57_c, complete sequence	18165-18193	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	408511-408539	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1333031-1333059	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1295215-1295243	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	820239-820267	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP048642	Streptomyces aureoverticillatus strain HN6 plasmid unnamed, complete sequence	76345-76373	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	394798-394826	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1399254-1399282	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	1646376-1646404	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	403514-403542	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	389751-389779	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	896316-896344	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1022848-1022876	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	749453-749481	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	655358-655386	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	1019064-1019092	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	284871-284899	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	559664-559692	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1178545-1178573	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	610683-610711	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	543668-543696	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	406624-406652	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1451484-1451512	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	1227777-1227805	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1333037-1333065	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP017941	Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence	548047-548075	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	374341-374369	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP048425	Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence	295911-295939	6	0.793
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP021372	Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence	10184-10212	6	0.793
NZ_CP019398_5	5.1\|3798090\|29\|NZ_CP019398\|CRISPRCasFinder	3798090-3798118	29	NZ_CP028970	Aminobacter sp. MSH1 plasmid pUSP2, complete sequence	359121-359149	7	0.759
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP032342	Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence	186898-186926	7	0.759
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NC_022043	Paracoccus aminophilus JCM 7686 plasmid pAMI5, complete sequence	123251-123279	7	0.759
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	620787-620815	7	0.759
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	16731-16759	7	0.759
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP021116	Rhodobacteraceae bacterium strain G7 plasmid unnamed2, complete sequence	144914-144942	7	0.759
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP007544	Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence	20005-20033	7	0.759
NZ_CP019398_5	5.5\|3798363\|29\|NZ_CP019398\|CRISPRCasFinder	3798363-3798391	29	NZ_CP040720	Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence	244746-244774	7	0.759
NZ_CP019398_5	5.5\|3798363\|29\|NZ_CP019398\|CRISPRCasFinder	3798363-3798391	29	NZ_CP013600	Rhizobium sp. N741 plasmid pRspN741e, complete sequence	718425-718453	7	0.759
NZ_CP019398_5	5.5\|3798363\|29\|NZ_CP019398\|CRISPRCasFinder	3798363-3798391	29	NZ_CP013504	Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence	718437-718465	7	0.759
NZ_CP019398_5	5.5\|3798363\|29\|NZ_CP019398\|CRISPRCasFinder	3798363-3798391	29	NZ_CP013510	Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence	716866-716894	7	0.759
NZ_CP019398_5	5.5\|3798363\|29\|NZ_CP019398\|CRISPRCasFinder	3798363-3798391	29	NZ_CP013521	Rhizobium sp. N113 plasmid pRspN113d, complete sequence	721113-721141	7	0.759
NZ_CP019398_5	5.5\|3798363\|29\|NZ_CP019398\|CRISPRCasFinder	3798363-3798391	29	NZ_CP013494	Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence	707996-708024	7	0.759
NZ_CP019398_5	5.5\|3798363\|29\|NZ_CP019398\|CRISPRCasFinder	3798363-3798391	29	NZ_CP013594	Rhizobium sp. N871 plasmid pRspN871d, complete sequence	718437-718465	7	0.759
NZ_CP019398_5	5.5\|3798363\|29\|NZ_CP019398\|CRISPRCasFinder	3798363-3798391	29	NZ_CP021083	Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence	6310-6338	7	0.759
NZ_CP019398_5	5.5\|3798363\|29\|NZ_CP019398\|CRISPRCasFinder	3798363-3798391	29	NZ_CP016821	Rhodococcus sp. p52 plasmid pDF01, complete sequence	86506-86534	7	0.759
NZ_CP019398_5	5.5\|3798363\|29\|NZ_CP019398\|CRISPRCasFinder	3798363-3798391	29	NZ_CP012698	Microbacterium sp. No. 7 plasmid A, complete sequence	59830-59858	7	0.759
NZ_CP019398_5	5.1\|3798090\|29\|NZ_CP019398\|CRISPRCasFinder	3798090-3798118	29	NC_022049	Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence	255759-255787	8	0.724
NZ_CP019398_5	5.1\|3798090\|29\|NZ_CP019398\|CRISPRCasFinder	3798090-3798118	29	NZ_CP011771	Croceicoccus naphthovorans strain PQ-2 plasmid p1, complete sequence	171591-171619	8	0.724
NZ_CP019398_5	5.1\|3798090\|29\|NZ_CP019398\|CRISPRCasFinder	3798090-3798118	29	NZ_CP024200	Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence	705964-705992	8	0.724
NZ_CP019398_5	5.1\|3798090\|29\|NZ_CP019398\|CRISPRCasFinder	3798090-3798118	29	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	107643-107671	8	0.724
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1053248-1053276	8	0.724
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NZ_CP021374	Rhizobium sp. ACO-34A plasmid pRACO34Ab, complete sequence	239342-239370	8	0.724
NZ_CP019398_5	5.3\|3798225\|29\|NZ_CP019398\|CRISPRCasFinder	3798225-3798253	29	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	504665-504693	8	0.724
NZ_CP019398_5	5.5\|3798363\|29\|NZ_CP019398\|CRISPRCasFinder	3798363-3798391	29	NZ_CP007256	Rhodococcus erythropolis R138 plasmid pCRE138, complete sequence	20427-20455	9	0.69

1. spacer 5.1|3798090|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 4, identity: 0.862

accttcacccatgatcagatcgttgccgg	CRISPR spacer
tccgccacccatgatcagatcgttgtcgg	Protospacer
 ** .********************.***

2. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP045303 (Azotobacter salinestris strain KACC 13899 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.862

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
ggcgccgccatcgaggacgtcgttgccgc	Protospacer
 .*********.****************.

3. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 4, identity: 0.862

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
cgctccgccattcaggacgtcgttgccgc	Protospacer
*.* ******** ***************.

4. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP051182 (Thalassobius gelatinovorus strain NEB572 plasmid pAge77, complete sequence) position: , mismatch: 4, identity: 0.862

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
aaagccgccattgatgaagtcgttgccgt	Protospacer
 * *********** ** ***********

5. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP051182 (Thalassobius gelatinovorus strain NEB572 plasmid pAge77, complete sequence) position: , mismatch: 4, identity: 0.862

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
aaagccgccattgatgaagtcgttgccgt	Protospacer
 * *********** ** ***********

6. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

7. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP010626 (Phaeobacter inhibens strain P51 plasmid pP51_c, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
tgcgccgccgttgacgacgtcgttgccga	Protospacer
..*******.**** *************

8. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

9. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

10. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

11. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

12. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

13. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

14. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

15. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NC_010997 (Rhizobium etli CIAT 652 plasmid pC, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
tgcgccaccatcgaggacgtcgttgccgg	Protospacer
..****.****.****************

16. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NC_010997 (Rhizobium etli CIAT 652 plasmid pC, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
tgcgccaccatcgaggacgtcgttgccgg	Protospacer
..****.****.****************

17. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

18. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

19. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

20. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

21. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

22. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

23. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

24. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

25. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

26. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

27. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

28. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

29. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

30. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

31. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

32. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

33. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

34. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

35. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

36. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

37. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

38. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

39. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

40. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

41. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

42. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

43. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

44. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

45. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

46. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

47. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

48. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

49. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

50. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

51. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

52. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

53. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

54. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

55. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

56. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

57. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

58. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

59. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

60. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

61. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

62. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

63. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

64. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

65. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

66. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

67. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

68. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

69. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

70. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccgttgagcacgtcgttgccgg	Protospacer
  *******.***** ************

71. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
ctgaccgccgatgaggacgtcgttgccgt	Protospacer
*  .*****. ******************

72. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NC_022043 (Paracoccus aminophilus JCM 7686 plasmid pAMI5, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atccccgccatagaggaagtcgttgccgt	Protospacer
  * ******* ***** ***********

73. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP017947 (Bosea sp. Tri-49 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
cgctccggcattgatgacgtcgttgccgc	Protospacer
*.* *** ****** *************.

74. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP018096 (Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence) position: , mismatch: 5, identity: 0.828

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
ctggccgccgatgaggacgtcgttgcctt	Protospacer
*  ******. **************** *

75. spacer 5.1|3798090|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP010614 (Phaeobacter inhibens strain P92 plasmid pP92_d, complete sequence) position: , mismatch: 6, identity: 0.793

accttcacccatgatcagatcgttgccgg	CRISPR spacer
gttttcacccaggatcaggtcgttgccag	Protospacer
...******** ******.********.*

76. spacer 5.1|3798090|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP010789 (Phaeobacter gallaeciensis strain P63 plasmid pP63_e, complete sequence) position: , mismatch: 6, identity: 0.793

accttcacccatgatcagatcgttgccgg	CRISPR spacer
gttttcacccaggatcaggtcgttgccag	Protospacer
...******** ******.********.*

77. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
ggtgccgccgttgagcacgtcgttgccgg	Protospacer
 ..******.***** ************

78. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
ggccccgccattgaggacgtcgtcgcccg	Protospacer
 .* *******************.***

79. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
ggcaccgccgttgaggacgtcgttgtcat	Protospacer
 .*.*****.***************.*.*

80. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
attgccgccatcgaggacgtcattgccgc	Protospacer
  .********.*********.******.

81. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP010702 (Phaeobacter inhibens strain P24 plasmid pP24_f, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
ttcgccgccgttgatgacgtcgttgccag	Protospacer
. *******.**** ************.

82. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP025188 (Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atcgccgccattgaggacgtcatcgcccg	Protospacer
  *******************.*.***

83. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP024582 (Roseomonas sp. FDAARGOS_362 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atcgccgccattgaggacgtcatcgcccg	Protospacer
  *******************.*.***

84. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
ggcgccgccattgagggcgtcgttgttgc	Protospacer
 .**************.********..*.

85. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP014802 (Salipiger profundus strain JLT2016 plasmid pTPRO6, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
ggcgccgccattgagggagtcgttgcccg	Protospacer
 .**************. *********

86. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP010671 (Phaeobacter inhibens strain P57 plasmid pP57_c, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
tgcaccgccgttgatgacgtcgttgccgg	Protospacer
..*.*****.**** *************

87. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

88. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

89. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

90. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gttggcgccatagaggatgtcgttgccgt	Protospacer
  .* ****** *****.***********

91. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP048642 (Streptomyces aureoverticillatus strain HN6 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
ctggcctccattgaggacgtcgtcgcccc	Protospacer
*  *** ****************.*** .

92. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

93. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

94. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

95. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

96. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

97. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

98. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

99. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

100. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

101. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

102. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

103. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

104. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

105. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

106. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

107. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

108. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

109. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

110. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
atggccgccatcgagaacgtcgttgcctt	Protospacer
   ********.***.*********** *

111. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP017941 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcaccgccgttgaggatgtcgttgccga	Protospacer
  *.*****.*******.**********

112. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
cgatccgccgttcaggacgtcgttgccgc	Protospacer
*.  *****.** ***************.

113. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP048425 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
ggcaccgccgttgaggatgtcgttgcctt	Protospacer
 .*.*****.*******.********* *

114. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
ggctccgccgttgaggatgtcgttgcctt	Protospacer
 .* *****.*******.********* *

115. spacer 5.1|3798090|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP028970 (Aminobacter sp. MSH1 plasmid pUSP2, complete sequence) position: , mismatch: 7, identity: 0.759

accttcacccatgatcagatcgttgccgg	CRISPR spacer
atgctgggccatgatcagatcgttgcagg	Protospacer
*. .* . ****************** **

116. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.759

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
ggcatcgccgttgagcacgtcgttgccgg	Protospacer
 .*..****.***** ************

117. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NC_022043 (Paracoccus aminophilus JCM 7686 plasmid pAMI5, complete sequence) position: , mismatch: 7, identity: 0.759

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcaccgccatagaggaggtcgttgccca	Protospacer
  *.******* ***** *********

118. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.759

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
ggcatcgccgttgagcacgtcgttgccgg	Protospacer
 .*..****.***** ************

119. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.759

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
ggcatcgccgttgagcacgtcgttgccgg	Protospacer
 .*..****.***** ************

120. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP021116 (Rhodobacteraceae bacterium strain G7 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
agacccgccaatgaggatgtcgttgcctt	Protospacer
 .  ****** ******.********* *

121. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP007544 (Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence) position: , mismatch: 7, identity: 0.759

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
ttctccgccattgaggatatcgttgccaa	Protospacer
. * *************..********.

122. spacer 5.5|3798363|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

ctcattgccggtcagaaggtcgcggtcgg	CRISPR spacer
aaaaccgccggtaagaaggtcgcggtagg	Protospacer
   *..****** ************* **

123. spacer 5.5|3798363|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP013600 (Rhizobium sp. N741 plasmid pRspN741e, complete sequence) position: , mismatch: 7, identity: 0.759

ctcattgccggtcagaaggtcgcggtcgg	CRISPR spacer
cgtcctgccggtcacaaggtcgcggtaga	Protospacer
* . .********* *********** *.

124. spacer 5.5|3798363|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP013504 (Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence) position: , mismatch: 7, identity: 0.759

ctcattgccggtcagaaggtcgcggtcgg	CRISPR spacer
cgtcctgccggtcacaaggtcgcggtaga	Protospacer
* . .********* *********** *.

125. spacer 5.5|3798363|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP013510 (Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence) position: , mismatch: 7, identity: 0.759

ctcattgccggtcagaaggtcgcggtcgg	CRISPR spacer
cgtcctgccggtcacaaggtcgcggtaga	Protospacer
* . .********* *********** *.

126. spacer 5.5|3798363|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP013521 (Rhizobium sp. N113 plasmid pRspN113d, complete sequence) position: , mismatch: 7, identity: 0.759

ctcattgccggtcagaaggtcgcggtcgg	CRISPR spacer
cgtcctgccggtcacaaggtcgcggtaga	Protospacer
* . .********* *********** *.

127. spacer 5.5|3798363|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP013494 (Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence) position: , mismatch: 7, identity: 0.759

ctcattgccggtcagaaggtcgcggtcgg	CRISPR spacer
cgtcctgccggtcacaaggtcgcggtaga	Protospacer
* . .********* *********** *.

128. spacer 5.5|3798363|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP013594 (Rhizobium sp. N871 plasmid pRspN871d, complete sequence) position: , mismatch: 7, identity: 0.759

ctcattgccggtcagaaggtcgcggtcgg	CRISPR spacer
cgtcctgccggtcacaaggtcgcggtaga	Protospacer
* . .********* *********** *.

129. spacer 5.5|3798363|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP021083 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence) position: , mismatch: 7, identity: 0.759

ctcattgccggtcagaaggtcgcggtcgg	CRISPR spacer
gtacgtgccggtcaggcggtcgcggtcgt	Protospacer
 *   **********. ***********

130. spacer 5.5|3798363|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP016821 (Rhodococcus sp. p52 plasmid pDF01, complete sequence) position: , mismatch: 7, identity: 0.759

ctcattgccggtcagaaggtcgcggtcgg	CRISPR spacer
aaaaccgccggtaagaaggtcgcggtagg	Protospacer
   *..****** ************* **

131. spacer 5.5|3798363|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP012698 (Microbacterium sp. No. 7 plasmid A, complete sequence) position: , mismatch: 7, identity: 0.759

ctcattgccggtcagaaggtcgcggtcgg	CRISPR spacer
gcggtcgccggtcagaagggcggggtcgg	Protospacer
 . .*.************* ** ******

132. spacer 5.1|3798090|29|NZ_CP019398|CRISPRCasFinder matches to NC_022049 (Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence) position: , mismatch: 8, identity: 0.724

accttcacccatgatcagatcgttgccgg	CRISPR spacer
gttcttgaccatgatcaggtcgttgccgg	Protospacer
....*.. **********.**********

133. spacer 5.1|3798090|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP011771 (Croceicoccus naphthovorans strain PQ-2 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.724

accttcacccatgatcagatcgttgccgg	CRISPR spacer
gaagtcacctatgaccagatcgttgccct	Protospacer
.   *****.****.************

134. spacer 5.1|3798090|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP024200 (Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence) position: , mismatch: 8, identity: 0.724

accttcacccatgatcagatcgttgccgg	CRISPR spacer
tatgtcacccatgatcagatcgaggccct	Protospacer
  . ******************  ***

135. spacer 5.1|3798090|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 8, identity: 0.724

accttcacccatgatcagatcgttgccgg	CRISPR spacer
tatgtcacccatgatcagatcgaagccat	Protospacer
  . ******************  ***.

136. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 8, identity: 0.724

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gcccatgccattgagcacgtcgttgccac	Protospacer
  *  .********* ***********..

137. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP021374 (Rhizobium sp. ACO-34A plasmid pRACO34Ab, complete sequence) position: , mismatch: 8, identity: 0.724

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
gtcgccgccattgaggatgtcgtcgatcc	Protospacer
  ***************.*****.* . .

138. spacer 5.3|3798225|29|NZ_CP019398|CRISPRCasFinder matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 8, identity: 0.724

cacgccgccattgaggacgtcgttgccgt	CRISPR spacer
caagccgccattcaggacgtcgtcaagcc	Protospacer
** ********* **********..   .

139. spacer 5.5|3798363|29|NZ_CP019398|CRISPRCasFinder matches to NZ_CP007256 (Rhodococcus erythropolis R138 plasmid pCRE138, complete sequence) position: , mismatch: 9, identity: 0.69

ctcattgccggtcagaaggtcgcggtcgg	CRISPR spacer
gatcttgccggtcagatggtcgcggagct	Protospacer
  . ************ ********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1319968 : 1328674

Pseudomonas_phage(42.86%)

holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_090453404.1\|1319968_1320826_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	6.5e-06	33.3
WP_007990225.1\|1320930_1321938_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
WP_007970729.1\|1322410_1322734_-	ferredoxin family protein	NA	NA	NA	NA
WP_154861808.1\|1322876_1325456_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	2.4e-27	23.1
WP_150812917.1\|1325664_1326399_+	helix-turn-helix domain-containing protein	B5TK58	Pseudomonas_phage	1.4e-129	94.3
WP_150812918.1\|1326571_1326913_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	5.6e-38	66.7
WP_057716659.1\|1327031_1327532_+	CinA family protein	B5TK85	Pseudomonas_phage	3.3e-71	81.9
WP_007996915.1\|1327615_1328674_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	2.0e-110	58.9

DBSCAN-SWA_2

3384033 : 3477809

100

uncultured_Caudovirales_phage(47.62%)

integrase,terminase,portal,capsid,tail,holin,protease,plate,head

attL 3443247:3443262|attR 3482277:3482292

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154859828.1\|3384033_3384972_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_150814109.1\|3385811_3386822_+	DNA-binding protein	NA	NA	NA	NA
WP_090455468.1\|3386818_3388177_-	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	8.0e-51	29.1
WP_007975949.1\|3388307_3389147_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	5.1e-64	46.8
WP_007985505.1\|3389435_3389624_+	hypothetical protein	NA	NA	NA	NA
WP_057714661.1\|3389761_3390043_+	hypothetical protein	NA	NA	NA	NA
WP_008053025.1\|3390054_3390285_-	hypothetical protein	NA	NA	NA	NA
WP_057714660.1\|3390357_3390714_-	hypothetical protein	NA	NA	NA	NA
WP_007912251.1\|3390915_3391218_+	DUF1883 domain-containing protein	NA	NA	NA	NA
WP_090455470.1\|3391255_3391423_+	hypothetical protein	NA	NA	NA	NA
WP_159390064.1\|3391540_3392245_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_159390065.1\|3392234_3392915_+	DNA oxidative demethylase AlkB	NA	NA	NA	NA
WP_159390066.1\|3393002_3394067_+	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	3.1e-18	51.1
WP_159390067.1\|3394067_3395051_-	acryloyl-CoA reductase	NA	NA	NA	NA
WP_159390068.1\|3395205_3396273_+	DUF561 domain-containing protein	NA	NA	NA	NA
WP_174245544.1\|3396431_3397163_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_057714653.1\|3397163_3397844_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_154859819.1\|3397847_3398927_+	molybdenum ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.8e-22	32.2
WP_154859818.1\|3399053_3399275_+	hypothetical protein	NA	NA	NA	NA
WP_057714650.1\|3399405_3399636_+	hypothetical protein	NA	NA	NA	NA
WP_057714648.1\|3399842_3400127_+	hypothetical protein	NA	NA	NA	NA
WP_159390069.1\|3400152_3400818_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_154947249.1\|3400995_3401838_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_090455493.1\|3401930_3402125_+	hypothetical protein	NA	NA	NA	NA
WP_057714641.1\|3402551_3402734_+	hypothetical protein	NA	NA	NA	NA
WP_154859815.1\|3403007_3403613_-	hypothetical protein	NA	NA	NA	NA
WP_150814095.1\|3403841_3405389_-	phospholipase D family protein	NA	NA	NA	NA
WP_159390070.1\|3405405_3405555_-	hypothetical protein	NA	NA	NA	NA
WP_159390406.1\|3405854_3408632_-	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	6.5e-23	26.4
WP_150814094.1\|3408855_3410160_+	MFS transporter	NA	NA	NA	NA
WP_150814093.1\|3410371_3411187_+	diaminopimelate epimerase	NA	NA	NA	NA
WP_174245545.1\|3411344_3412289_-	TerC family protein	A0A291LBC5	Escherichia_phage	4.3e-35	34.1
WP_150814113.1\|3412791_3413658_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_090455525.1\|3413833_3414790_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_159390071.1\|3414905_3415907_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA
WP_150814091.1\|3415973_3416300_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_090455529.1\|3416492_3417323_-	alpha/beta hydrolase	A0A1B1SFC9	Mycobacterium_phage	1.1e-07	26.8
WP_159390407.1\|3417575_3418025_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_159390072.1\|3418078_3419083_-	acetoacetate decarboxylase (ADC)	NA	NA	NA	NA
WP_159390408.1\|3419318_3420122_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_154859805.1\|3420317_3421397_+	saccharopine dehydrogenase NADP-binding domain-containing protein	NA	NA	NA	NA
WP_159390073.1\|3421995_3426228_+	hypothetical protein	NA	NA	NA	NA
WP_154859801.1\|3427038_3427416_+	hypothetical protein	NA	NA	NA	NA
WP_057714624.1\|3427679_3427883_-	hypothetical protein	NA	NA	NA	NA
WP_159390074.1\|3428786_3428996_+	hypothetical protein	A0A1B0VP78	Pseudomonas_phage	3.0e-10	55.6
WP_159390075.1\|3429120_3429609_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_159390076.1\|3429965_3430481_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_159390077.1\|3430509_3430839_+	hypothetical protein	NA	NA	NA	NA
WP_159390078.1\|3431203_3431458_-	hypothetical protein	NA	NA	NA	NA
WP_159390079.1\|3431705_3438665_-	hypothetical protein	NA	NA	NA	NA
WP_159390080.1\|3439013_3439289_+	hypothetical protein	NA	NA	NA	NA
WP_159390081.1\|3439531_3440326_-	DNA adenine methylase	C7BGE1	Burkholderia_phage	1.8e-98	65.0
WP_159390082.1\|3440528_3441563_-	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	6.8e-143	72.1
WP_159390083.1\|3441615_3441822_-\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	1.2e-19	67.2
WP_159390084.1\|3441796_3442654_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	2.5e-103	64.9
WP_159390085.1\|3442663_3445006_-\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	1.7e-80	37.6
3443247:3443262	attL	NA	NA	NA	NA
WP_159390086.1\|3445149_3445455_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_159390087.1\|3445466_3445970_-\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	5.2e-64	70.6
WP_159390088.1\|3445982_3447146_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A2H4J869	uncultured_Caudovirales_phage	8.1e-169	77.2
WP_159390089.1\|3447244_3447817_-	hypothetical protein	NA	NA	NA	NA
WP_174245546.1\|3447816_3448209_-\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	6.5e-22	41.3
WP_159390091.1\|3450040_3450652_-\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	1.6e-62	64.4
WP_159390092.1\|3450653_3451532_-\|plate	baseplate J/gp47 family protein	A0A2H4JFK9	uncultured_Caudovirales_phage	1.1e-98	62.4
WP_159390409.1\|3451528_3451855_-	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	1.0e-36	67.6
WP_159390093.1\|3451868_3452090_-	hypothetical protein	NA	NA	NA	NA
WP_159390094.1\|3452146_3452707_-\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	3.3e-51	73.7
WP_159390095.1\|3452673_3453237_-	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	3.1e-49	59.7
WP_159390096.1\|3453229_3453865_-	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	3.8e-72	67.6
WP_159390097.1\|3453861_3454176_-	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	1.2e-31	66.0
WP_060539985.1\|3454178_3455174_-\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	6.5e-159	82.2
WP_159390098.1\|3455237_3455582_-\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	3.2e-33	68.4
WP_159390099.1\|3455578_3456727_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A2H4JDI2	uncultured_Caudovirales_phage	5.8e-143	71.7
WP_159390100.1\|3456723_3458208_-\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	2.5e-239	83.0
WP_027923826.1\|3458207_3458414_-	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	3.8e-21	75.0
WP_159390101.1\|3458467_3460477_-\|terminase	phage terminase large subunit family protein	A0A2H4J898	uncultured_Caudovirales_phage	0.0e+00	81.2
WP_159390102.1\|3460480_3461080_-\|terminase	terminase small subunit	A0A2H4JG15	uncultured_Caudovirales_phage	1.4e-52	57.2
WP_159390103.1\|3461571_3462018_-	DUF1737 domain-containing protein	NA	NA	NA	NA
WP_159390104.1\|3462146_3462482_-\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	6.1e-37	73.1
WP_159390105.1\|3462802_3463042_-	DUF2188 domain-containing protein	NA	NA	NA	NA
WP_159390410.1\|3463405_3464371_+	DUF3644 domain-containing protein	NA	NA	NA	NA
WP_159390106.1\|3464484_3465510_-	DUF4238 domain-containing protein	NA	NA	NA	NA
WP_174245519.1\|3465838_3466228_-	antitermination protein Q	A0A1W6JTD2	Pseudomonas_phage	6.0e-36	56.3
WP_159390107.1\|3466232_3466553_-	hypothetical protein	A0A2D1GNG3	Pseudomonas_phage	9.1e-22	53.1
WP_159390108.1\|3466524_3467862_-\|integrase	tyrosine-type recombinase/integrase	A0A2D1GND4	Pseudomonas_phage	2.4e-124	50.8
WP_159390109.1\|3467861_3468362_-	hypothetical protein	H2BDI1	Pseudomonas_virus	2.1e-17	37.1
WP_159390110.1\|3468361_3469183_-	Replication protein P	A0A2D1GNB3	Pseudomonas_phage	1.4e-90	75.0
WP_159390111.1\|3469182_3469929_-	hypothetical protein	A0A2D1GNQ6	Pseudomonas_phage	8.4e-95	68.7
WP_159390112.1\|3470301_3470922_-	hypothetical protein	NA	NA	NA	NA
WP_108217324.1\|3470975_3471176_-	hypothetical protein	A0A0U1UNM4	Pseudomonas_phage	1.7e-10	50.0
WP_159390113.1\|3471282_3472005_+	peptidase S24	F1C599	Cronobacter_phage	2.0e-48	50.0
WP_159390114.1\|3472225_3472474_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_159390115.1\|3472857_3473037_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	5.8e-10	56.1
WP_159390116.1\|3473238_3473391_+	hypothetical protein	NA	NA	NA	NA
WP_159390117.1\|3473816_3474143_+	hypothetical protein	A0A2H4J0R5	uncultured_Caudovirales_phage	9.3e-06	32.0
WP_159390118.1\|3474180_3474414_-	hypothetical protein	NA	NA	NA	NA
WP_159390119.1\|3474807_3475011_-	hypothetical protein	NA	NA	NA	NA
WP_159390120.1\|3475202_3475391_+	DUF4406 domain-containing protein	NA	NA	NA	NA
WP_159390121.1\|3475448_3475805_+	hypothetical protein	NA	NA	NA	NA
WP_159390122.1\|3476569_3476776_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_159390123.1\|3476777_3477809_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	1.9e-97	56.3
3482277:3482292	attR	NA	NA	NA	NA

DBSCAN-SWA_3

5762273 : 5806893

Burkholderia_phage(33.33%)

holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150813800.1\|5762273_5762777_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_154861006.1\|5763090_5763978_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_154861005.1\|5763979_5764540_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_154861004.1\|5764765_5765797_+	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	9.1e-23	41.1
WP_090451825.1\|5765845_5767045_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.3e-09	27.0
WP_150813796.1\|5767248_5768106_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_150813795.1\|5768262_5768895_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_102672491.1\|5769070_5772088_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_057713000.1\|5772084_5772414_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_007907561.1\|5772428_5773679_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
WP_102672492.1\|5773702_5774956_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.3e-100	53.2
WP_154861003.1\|5775239_5775956_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_154861002.1\|5776112_5777153_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_150813793.1\|5777351_5778176_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_090451831.1\|5778304_5779405_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_057712996.1\|5779687_5780983_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_154861001.1\|5781789_5783010_-\|protease	retroviral-like aspartic protease family protein	NA	NA	NA	NA
WP_154861000.1\|5783173_5783740_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_154860999.1\|5783889_5784660_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_154860998.1\|5784675_5785896_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_057712991.1\|5785895_5787845_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_057712990.1\|5787979_5790040_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_008048169.1\|5790055_5790586_-	hypothetical protein	NA	NA	NA	NA
WP_032829497.1\|5790664_5791642_-	membrane dipeptidase	NA	NA	NA	NA
WP_057712989.1\|5791878_5792280_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_159390359.1\|5792320_5792494_-	hypothetical protein	NA	NA	NA	NA
WP_102672501.1\|5792492_5792747_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	2.6e-24	65.5
WP_056726566.1\|5792730_5793054_+	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	3.2e-22	54.6
WP_150813789.1\|5793087_5793504_+	DUF3010 family protein	NA	NA	NA	NA
WP_057712988.1\|5793635_5794580_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_102672502.1\|5794804_5795749_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_103396696.1\|5795843_5796731_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_154860997.1\|5796872_5797838_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_090451849.1\|5797992_5798469_+	thioesterase family protein	NA	NA	NA	NA
WP_154860996.1\|5798482_5799646_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_007995656.1\|5800031_5800298_+	hypothetical protein	NA	NA	NA	NA
WP_007975492.1\|5800410_5801514_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_057712982.1\|5802046_5803423_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_057712981.1\|5803858_5804806_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_057716544.1\|5804872_5805718_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_047534342.1\|5805714_5806893_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-25	37.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019398

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection