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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP023409 Bacillus subtilis strain 7PJ-16 chromosome, complete genome 2 crisprs csa3,RT,DEDDh,WYL,DinG,cas3,PD-DExK 0 1 16 0

Results visualization

1. NZ_CP023409
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023409_1 984559-984664 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023409_2 3097358-3097465 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP023409_2 2.1|3097382|60|NZ_CP023409|CRISPRCasFinder 3097382-3097441 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
NZ_CP023409_2 2.1|3097382|60|NZ_CP023409|CRISPRCasFinder 3097382-3097441 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
NZ_CP023409_2 2.1|3097382|60|NZ_CP023409|CRISPRCasFinder 3097382-3097441 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
NZ_CP023409_2 2.1|3097382|60|NZ_CP023409|CRISPRCasFinder 3097382-3097441 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
NZ_CP023409_2 2.1|3097382|60|NZ_CP023409|CRISPRCasFinder 3097382-3097441 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
NZ_CP023409_2 2.1|3097382|60|NZ_CP023409|CRISPRCasFinder 3097382-3097441 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
NZ_CP023409_2 2.1|3097382|60|NZ_CP023409|CRISPRCasFinder 3097382-3097441 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
NZ_CP023409_2 2.1|3097382|60|NZ_CP023409|CRISPRCasFinder 3097382-3097441 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
NZ_CP023409_2 2.1|3097382|60|NZ_CP023409|CRISPRCasFinder 3097382-3097441 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 2.1|3097382|60|NZ_CP023409|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 2.1|3097382|60|NZ_CP023409|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 2.1|3097382|60|NZ_CP023409|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 2.1|3097382|60|NZ_CP023409|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 2.1|3097382|60|NZ_CP023409|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 2.1|3097382|60|NZ_CP023409|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 2.1|3097382|60|NZ_CP023409|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 2.1|3097382|60|NZ_CP023409|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 2.1|3097382|60|NZ_CP023409|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 151874 : 193667 54 Bacillus_phage(64.71%) capsid,tail,integrase,protease,plate,tRNA,holin,terminase,head,portal attL 155238:155297|attR 190973:191039
DBSCAN-SWA_2 565258 : 573921 13 Streptococcus_phage(37.5%) integrase attL 567026:567041|attR 573336:573351
DBSCAN-SWA_3 729012 : 737378 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_4 1296192 : 1330137 38 Bacillus_phage(66.67%) coat,tRNA NA
DBSCAN-SWA_5 1363686 : 1396019 45 Bacillus_phage(30.3%) tail,plate,terminase,holin,portal NA
DBSCAN-SWA_6 1841195 : 1847754 6 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_7 2032251 : 2040278 9 Bacillus_phage(85.71%) holin NA
DBSCAN-SWA_8 2101257 : 2200338 152 Bacillus_phage(96.55%) integrase attL 2112522:2112538|attR 2208031:2208047
DBSCAN-SWA_9 2210358 : 2231315 24 Bacillus_phage(100.0%) holin NA
DBSCAN-SWA_10 2285834 : 2308585 19 Bacillus_phage(57.14%) coat,tail,transposase,portal NA
DBSCAN-SWA_11 2419559 : 2425655 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_12 2756272 : 2809744 55 uncultured_Mediterranean_phage(12.5%) coat,tRNA,protease NA
DBSCAN-SWA_13 3060765 : 3161995 112 uncultured_Caudovirales_phage(52.73%) coat,capsid,integrase,plate,terminase,holin,portal attL 3098876:3098893|attR 3162156:3162173
DBSCAN-SWA_14 3426551 : 3434459 10 Thermus_phage(33.33%) NA NA
DBSCAN-SWA_15 3442877 : 3450609 9 Organic_Lake_phycodnavirus(50.0%) holin NA
DBSCAN-SWA_16 3821332 : 3898253 77 Bacillus_phage(26.67%) bacteriocin,tRNA,coat,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage