CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP032675	Rhodococcus rhodochrous strain ATCC BAA870 chromosome, complete genome	1 crisprs	csa3,cas3,PD-DExK,DEDDh,WYL,Cas9_archaeal,cas4,DinG	0	0	0	0
NZ_CP032676	Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence	0 crisprs	csa3,RT	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP032675_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032675_1

831543-831629

Orphan

Consensus_repeat	Method
CTACCCGCCTCCGGGGAACTATCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP032675_1

>merge|NZ_CP032675|1|831543-831629|CRISPRCasFinder
TTATCCGCCACCCGGAAACTACCCACCACCCGGAAACTATCCGCCGCCCTCGGGGGGTGGCACTCCCCCGCCGGGTGGGAACTATCC

>NZ_CP032675|1|1|831543-831629|CRISPRCasFinder
TTATCCGCCACCCGGAAACTACCC	ACCACCCGGAAACTATCCGCCGCCCTCGGGGGGTGGCAC
TCCCCCGCCGGGTGGGAACTATCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032675.1\|WP_120281144.1\|833409_834141_+\|queuosine-precursor-transporter	unknown	unknown	gnl\|CDD\|376842
NZ_CP032675.1\|WP_145691020.1\|839719_840139_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|378988
NZ_CP032675.1\|WP_088899132.1\|826680_827265_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP032675.1\|WP_120281150.1\|827318_828056_-\|3-hydroxybutyrate-dehydrogenase	unknown	unknown	gnl\|CDD\|211705
NZ_CP032675.1\|WP_159416938.1\|842684_843782_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270265
NZ_CP032675.1\|WP_174246950.1\|834173_835433_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP032675.1\|WP_145691022.1\|841047_841650_-\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|224198
NZ_CP032675.1\|WP_120281149.1\|828052_829441_-\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP032675.1\|WP_120281145.1\|832546_833284_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP032675.1\|WP_159416931.1\|822674_823967_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|372371
NZ_CP032675.1\|WP_120281148.1\|829564_830464_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP032675.1\|WP_159416930.1\|820934_822365_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032675.1\|WP_016691009.1\|824398_824662_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032675.1\|WP_159416935.1\|835429_836668_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|182234
NZ_CP032675.1\|WP_159416932.1\|824752_825823_-\|DUF1524-domain-containing-protein	unknown	unknown	gnl\|CDD\|377857
NZ_CP032675.1\|WP_159416937.1\|841722_842604_+\|ArgP/LysG-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|235144
NZ_CP032675.1\|WP_174247093.1\|840175_841042_+\|cation-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_CP032675.1\|WP_159416933.1\|825961_826627_+\|DUF1275-domain-containing-protein	unknown	unknown	gnl\|CDD\|377734
NZ_CP032675.1\|WP_159416934.1\|830473_831406_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|235573
NZ_CP032675.1\|WP_159416936.1\|836829_839571_-\|calcium-translocating-P-type-ATPase,-PMCA-type	unknown	unknown	gnl\|CDD\|319781

Protein	Function_ID	Function_description	E-value
NZ_CP032675.1\|WP_120281144.1\|833409_834141_+\|queuosine-precursor-transporter	gnl\|CDD\|376842	pfam02592, Vut_1, Putative vitamin uptake transporter.	6.80355e-52
NZ_CP032675.1\|WP_145691020.1\|839719_840139_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|378988	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase. Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyzes the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several pyridoxamine 5'-phosphate oxidases, and related proteins.	1.73194e-25
NZ_CP032675.1\|WP_088899132.1\|826680_827265_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.03776e-09
NZ_CP032675.1\|WP_120281150.1\|827318_828056_-\|3-hydroxybutyrate-dehydrogenase	gnl\|CDD\|211705	TIGR01963, D-beta-hydroxybutyrate_dehydrogenase, 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.	3.09925e-101
NZ_CP032675.1\|WP_159416938.1\|842684_843782_-\|extracellular-solute-binding-protein	gnl\|CDD\|270265	cd13547, PBP2_Fbp_like_2, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.94156e-32
NZ_CP032675.1\|WP_174246950.1\|834173_835433_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	1.00081e-177
NZ_CP032675.1\|WP_145691022.1\|841047_841650_-\|LysE-family-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	4.56989e-61
NZ_CP032675.1\|WP_120281149.1\|828052_829441_-\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.01623e-173
NZ_CP032675.1\|WP_120281145.1\|832546_833284_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	1.04903e-25
NZ_CP032675.1\|WP_159416931.1\|822674_823967_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|372371	pfam12897, Aminotran_MocR, Alanine-glyoxylate amino-transferase. These proteins catalyze the reversible transfer of an amino group from the amino acid substrate to an acceptor alpha-keto acid. They require pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze this reaction. Trans-amination reactions are of central importance in amino acid metabolism and in links to carbohydrate and fat metabolism. This class of aminotransferases acts as dimers in a head-to-tail configuration.	0
NZ_CP032675.1\|WP_120281148.1\|829564_830464_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.03464e-23
NZ_CP032675.1\|WP_159416935.1\|835429_836668_-\|MFS-transporter	gnl\|CDD\|182234	PRK10091, PRK10091, MFS transport protein AraJ; Provisional.	1.37468e-91
NZ_CP032675.1\|WP_159416932.1\|824752_825823_-\|DUF1524-domain-containing-protein	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	1.12637e-37
NZ_CP032675.1\|WP_159416937.1\|841722_842604_+\|ArgP/LysG-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|235144	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator.	4.87473e-137
NZ_CP032675.1\|WP_174247093.1\|840175_841042_+\|cation-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	3.73888e-76
NZ_CP032675.1\|WP_159416933.1\|825961_826627_+\|DUF1275-domain-containing-protein	gnl\|CDD\|377734	pfam06912, DUF1275, Protein of unknown function (DUF1275). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although most members have 6 TM regions, and may be putative permeases.	1.63788e-31
NZ_CP032675.1\|WP_159416934.1\|830473_831406_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|235573	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS.	1.15481e-124
NZ_CP032675.1\|WP_159416936.1\|836829_839571_-\|calcium-translocating-P-type-ATPase,-PMCA-type	gnl\|CDD\|319781	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp. strain PCC 7942 PacL and Listeria monocytogenes LMCA1. Ca(2+) transport ATPase is a plasma membrane protein which pumps Ca(2+) ion out of the cytoplasm. This prokaryotic subfamily includes the Ca(2+)-ATPase Synechococcus elongatus PacL, Listeria monocytogenes Ca(2+)-ATPase 1 (LMCA1) which has a low Ca(2+) affinity and a high pH optimum (pH about 9) and may remove Ca(2+) from the microorganism in environmental conditions when e.g. stressed by high Ca(2+) and alkaline pH, and the Bacillus subtilis putative P-type Ca(2+)-transport ATPase encoded by the yloB gene, which is expressed during sporulation. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0

>NZ_CP032675.1|WP_159416934.1|830473_831406_+|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MSLPDEDEAGAGRFAPSPSGDLHLGNLRTAVLAWLFARSTNRRFLVRVEDLDRVRPGAEQRQLADLAAIGLDWDGRVVHQSRRRRLYDEAIARLEQAGLTYECYCTRREILEATSAPHAPAGAYPGTCRNLTDEQRAERRASGRAPAIRLRATEEWFTVHDLLHGDFTGIVDDLVLRRNDGTPAYNLAVVVDDADQGIDQVVRGDDLLTSAPRQAYLAHLLGLSEPVYAHVPLALNKEGKRLAKRDGAVTLADQLALGHTADDVLGTIAVSLRLADPGEPVSPELLLDRWNPVRLPRDPWVFAPSEEGIR
>NZ_CP032675.1|WP_120281148.1|829564_830464_+|LysR-family-transcriptional-regulator
MSVPSADDLLVLLAVGRSGRFTSAADDLGVNHTTISRRIASLERSLGGRVLARSAAGWELTDLGREALEAAERIEAAVGTLRNPRGERRLEGVVRISATDGFSAYIAAPAGALVRQRHPGISVEIVATTRRASQQRSGMDIEVVVGRPQVHRAEAHRLADYNLGLYASRDYLATHGSPSSVRDLREHTLVYFIDSMLQVDDLDVARRIAPDMQDSISSTNVFVHVEATRAAGGLGLLPCFMADRHPDLVRVLPGEVEARLAYWLVARSETLRRPEVAAAVAAIREVVHAQRAVLLGVAR
>NZ_CP032675.1|WP_120281149.1|828052_829441_-|MHS-family-MFS-transporter
MSVEQARTDGPESSPSALRRVVGASMAGTVVEWYEFFLYGTAATLVFAKVFFPDGGNELDAIIAAFVTYAVGFVARPLGGIVFGHFGDRFGRKQLLQTSIIMVGVATFLMGCLPTFGAIGYWAPALLVTLRFIQGFAVGGEWGGAVLLVAEHSPNRSRGFWSSWPQAGVPMGNLLATIVLLVLTTTLPESAFLSWGWRVAFWLSAVIVLIGYYIRTKVTDAPIFLEAQQEADKLKETSFNVFEVLKRYPRGVFTAMGLRFAENVMYYLVVTFSITYLKIVVGADTSHILWWMLAAHAVHFVIIPMVGRLSDTLGRRPVYMIGAVTAGAWGFLAFPMMDTGNSAWIVSAIVIGLVFHSFMYAGQPAIMAEMFPTRMRYSGVSLGYQVTSIVAGSLAPIIAASLLSRFESSVPISFYLLGSSLITIVAVIVARETKGISLRDIDAADAETVAQEKAAENARVSA
>NZ_CP032675.1|WP_120281150.1|827318_828056_-|3-hydroxybutyrate-dehydrogenase
MRARTALVTGGAGGIGAACARALARQGVRVTVADVDEVAAKTLAHEIGGEGWGVDLLDTDGLDGLRLDVDILVNNAGIQVVRPVEDFALADFRRIQTLMVEAPFLLVKAALPGMYERGFGRIVNISSVHGLRASAFKAGYVTAKHGLEGFSKVVALEGGPRGVTSNCVNPGYVRTPLVEKQISEQARAHDIPEDRVLSDVLLTDQAVTRLVEPEEVASLVSWLASDEAGMVTGASYTMDGGWSAH
>NZ_CP032675.1|WP_088899132.1|826680_827265_+|TetR/AcrR-family-transcriptional-regulator
MRTRPYVTTSPTRLAAALLDVAARNGLDAASVREVANEAGVSIGAVQHHFPTKDEMLAYSFRTLSDRVLNRLTNVDPDIDPARTLFSALSQLLPLDEERGSEVHVMSAFAVRAVTSPALSAIRTATLFTIRTGIARVLIRAGTPDPETRAALLLSAANGLALDAAASPELYPREYLTHALHAQVQLVLDGADAH
>NZ_CP032675.1|WP_159416933.1|825961_826627_+|DUF1275-domain-containing-protein
MVGYGRQLQGLAIALSSLAGFIDALGFITLGGVFVSFMSGNSTRFAVGTADGAWQTVALIGGVLALFVVGVILGSVVAELTDRDRRTRKTAVLATVTVLLTIAAAAVLVDRTPVAVIAMTLAMGTENSVFRRHGETTVALTYMTGALVKIGQRIAAAFFGGPRWSWLPYLGLWGGLVTGAVLGALAHRVLGLHALWIAAAFAAALTVAVRFLSDHELTGGV
>NZ_CP032675.1|WP_159416932.1|824752_825823_-|DUF1524-domain-containing-protein
MSLPRLSSRLSVLVVATVAGLTLTGCDSTTEDTSVAPAATSERSPAPSSDTPTTTPSPTTTRPTSATAPGPAASNPAASADSSEALARLATLPVKGRAPKTGYSRDLFGQAWSDDVSVEFGGNGCDTRNDILRRDLVDIVYRPGTRDCVVASGTLNDVYTGTTIAFTRGQDTSTAVQIDHVVALSDAWQKGAQQLDAGTRADFANDPRNLQAVDGPTNQQKSDGDAATWLPPNRAYRCTYVARQIEVKAIYGLWVTQAEHDAMARVLTECGGGSPAAAPAPAPTTTTRPAPAPAPAPAPAPAPAPAPTPAEPAPASADVYYENCAAARAAGAAPLYVGEPGYRPKMDGDGDGVACE
>NZ_CP032675.1|WP_016691009.1|824398_824662_+|hypothetical-protein
MRLVTADDNFPLAGDADHEQASVWVEMLDREIDEVSAAIEKTEQKALAEHRVGAVDRARRFDAEVERLGAQLRELHRMRRNLTDRFS
>NZ_CP032675.1|WP_159416931.1|822674_823967_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MPTQTQYGLMSHEELVAEHERQSANYERLKSEKLTLDLTRGKPSPEQLDLSAELLSLPGADDFRDGNGTDTRNYGGLTGLPELRAIFAELLNIPVENLIAGNNASLEIMHDLVVWSLLHGTVDSPRPWSQESVVKFLCPAPGYDRHFAITESLGIEMIPVPLREDGPDVRFIADLVANDPQIKGMWAVPTYSNPTGAVYSEEVARELVSMPTAAPDFRIFWDNAYAVHPLTEHLAPAIDILGLAAQAGHPNRVFALASTSKITFAGSGVSFFGSSTENLTWYQKHLGIKTIGPDKVNQLRHLRFFRDAEGVRAHMAKHREILAPKFALVRRILEERLGTSKVASWTEPEGGYFISLDVVEGTAARVIALAKEAGIALTGAGSAFPYKKDPEDKNIRLAPSFPSLGELEKAMDGVATCVLLAAAEKALADK
>NZ_CP032675.1|WP_159416930.1|820934_822365_-|hypothetical-protein
MENRALVNSGVGASAVGSVTGCLGVLKVFLLALDIEAAPETPPRVPPVEKVEPFLPARIAEQPETDHGVRPPCLLAFRHVVDPTRPEISFGASTGSLREAPDATRPYVGHPATCVSLWDVPGHGLVLALESLSDHGSPLVDWRSDPLQDREGAGLRPVLGEFLAPFELTADACLNDVFPGLNRRLCAPTTYRPLHELVVHRHRGVGDREVAEGMVVEVVSSGGERVRSLVDGPRIGPEARAAARSWGVLWKWDRVPLVDRPVQPGAAIAVREDSGAVLFDLEATALGSDYVGHGTREMIYGLIPWVAVRARASADYWTTMEHLRHPDGLDGDRLATVLDDIAIMQARRMERALLRKESIHDDRFHSWTQPTQLRALMAGRVADELAELDAELSEAVDVVEHALLRSAELRGARHTRLAQGWSAAASVIAVVALFAALAAVPATSQPTLFPHWMHALTTSIALTLGIVIAVVVWRRP
>NZ_CP032675.1|WP_120281145.1|832546_833284_+|RDD-family-protein
MTTGGYPPPQQDPRATGGHPGAPSYGATPPDYTQQFPQYGAPQNGGPQYGAPQYGTPQYGTPQNGAPQYGAPQYGAPQGNGFGGPGFPGPDPNFGTGTPGELLPRLGARIIDGLIVGIPMGILTAIMLLASGGSGFVNFFMTVVSGVVAFGYWTYMESARGATVGKKLLGLSVVGPAGGNPTLEQAAKRNAFVALQILTGIPLLGFLAGLLSLAAYIGIAVTIEQDGDKQGFHDKFAGGTRVRKS
>NZ_CP032675.1|WP_120281144.1|833409_834141_+|queuosine-precursor-transporter
MTEHGSNTSPALFDHAAFARVGRSPYTGIVVLFTAVLMISNISATKGIAFFTGSELTAGPLQILPIITDGGFFLFPLAYILGDVLSEVYGFAATRRAVFYGFGAVALSALCFWITQQLPPADFYAGQESFENVLGVVPRMLIAGLAGYAVGQLLNSYVLVRIKERTREKHLWARLIGSTVVGEFADTLIFCSIAAGAIGITTWADFVNFVIVGFLWKTLVEIVVLPVTYRVIAYVKKREPSYA
>NZ_CP032675.1|WP_174246950.1|834173_835433_-|tRNA-guanosine(34)-transglycosylase-Tgt
MTDSSIPTPPDPFFTVGARLDNGLGRTGTIHTPHGDIRTPAFVPVGTKATVKAVLPETMAELGSQALLANAYHLYLQPGSDIVDEAGGLGKFMNWPGPTFTDSGGFQVMSLGAGFKKVIAMESVGVQNDDVIAKGKERLAHVDDDGVTFKSHLDGSRHRFTPEVSMRIQHELGADIMFAFDELTTLMNTRGYQERSLERTQAWAVRCIAEHEKLTAERAHRPYQALFGVVQGAQYEDLRRQACRGLESIVGETGRGFDGYGIGGALEKHNLGTIVRWCTEELPEHKPRHLLGISEPDDIFVAVEHGVDTFDCVNPSRVARNAAIYHPDGRFNINTSRHRRDFTPIDENCDCYTCRNYTRAYIHHLFKAKEMLASTLCTIHNERFTVRLVDDIRTNMEKGTLAEFKAETLGRFYASRRQA
>NZ_CP032675.1|WP_159416935.1|835429_836668_-|MFS-transporter
MTTTASGRPLDDPAHTDSGHPARTLVMWALALGGFGIGTTEFVAMGLLPEIATSIGVSEPTAGHVVSAYAAGVVVGAPLIATIAARVPRKTLLVALMVAFTLGNAATVLAPNYGLLVVSRFVAGLPHGAYFGVAALVAAHLAGPGRRARAVSLVMMGLSVANVVGVPAASWLGMALGWRAAFVLVAAIGVATVVALAAWVPTLSIPTTSVRVELGALKSSTVWLTLAVAVIGFGGVFAVYTYISTTLTDVAGVSRSLVPVALMLFGVGMVVGNAIGGRVADRGVIPGVYASITSLAVLLALFVAAAHNPWTAFVMVFGLGVGCAAVGPALQVRLMDVAEDAQTLAASLHHAAFNLANAFGAWIGGVVIAAGFGYTAPAAVGVLLALAGVAVFAISVRRREKAAPSRRDWIRK
>NZ_CP032675.1|WP_159416936.1|836829_839571_-|calcium-translocating-P-type-ATPase,-PMCA-type
MSAQAPATTSSWHTRAATDVAEAFEVDPQRGLSADEVERRRGEYGPNLLDEAKKVPTWRRVLSLLADRMTLVLVVAAVVSATVSREWETPVVIFAVIALNTVLNYVQESRAESSLAALKKMSVSTSRVLRDGRGTEVPRAELVPGDVVLLEAGDTVPADGRLVTAVRLQVAEAALTGESQPVDKQADVVDDPDAPLGDRTDMLFMNTEVTRGRAAMIVTGTGMRTEMGAIATLLGSAGGEQTPLQRRIGQLAQTLTIVAIVTVALVFVLGLLRGQTWSDLLVTAVSLAVATIPEGLTAVVAFTLAMGASRLAARGAIVKRLAAVETLGSTTHICTDKTGTLTLNEMTVQRLLVAGRAFRVTGTGYGTDGKILVGDGLPAPDFTDALLGMGLCNDATVRNGVLVGDPTEGALVVLAEKGGIDVEGARAALNRISEVPFDSDYKYMATFHTLPNGGYRCFVKGAPGVLLDRATSIAGPDGPIPLDDDGRARIQRAVEALASEGLRTLMIAGRDLDAVPRGDTDALQEKVADLTIHAIVGIVDPPRTEAEDAIAVAHEAGISVHMITGDHLVTASAIAEELGIRGSAASGSDLDKLTDDELRRRAKEFGVLARVAPEHKIRFVEALQADGQIVAMTGDGVNDAPALEQSDIGVAMGITGTDVSKGAADMILTDDNFATIVAAVAEGRGIYDNIVKFVKFQLTTAWGFVLIFLTAGVLGLAGGAPFSALQILWVNIIMDGPPALALGVDPTAPDAMRRRPRPANEALLERARVQRILGLGIVMTVGTIAVLHFGPELFPDSASDPLFATTLAFTTFVFYQVFNLFNVRSDLGSVFSAQTFTNHTIWIAIGAVVVLQICVVQLGALQGFMDTTSLTSEQWLLAVAVGSSVLWVDEIGKFVARRIEARRAERADTTFLT
>NZ_CP032675.1|WP_145691020.1|839719_840139_+|pyridoxamine-5'-phosphate-oxidase-family-protein
MSDNPNTDDPVVQLDEDQCWDLLATGKVGRLVTVVGGRPEIYPVNYVTDDRTVYFRSGEGSKLSELAVHPQVAFEVDEIREDSAWSVVLHGHARILRSFDDAARIDALGLSPWVPTPKYDYVALTATDLTGMQLTLVKR
>NZ_CP032675.1|WP_174247093.1|840175_841042_+|cation-transporter
MRFMLLSVATALATMLLKASAAWITGSVGLLSDALESGVNLVAAVVGLAALRLAAKPADANHDFGHGKAEYLSAAVEGTMVFAAATVILWTSVERLISPQPVTEVGLGLVLSAGSSALNLVVGLLLIRQGRAHRSITLVADGKHLLTDVWTSAGVLVGVALVALSGWDVLDPIVAILVALNILRIGFGLVRQAVVGMLDAVLPPEDVTAVNAVLDRYREPGVVTILPPRTRESGRQRFVYLVVRVPGDWTVRAGHDLLDRIEADLGEALPGVVVFSHLEPDRAPTGRR
>NZ_CP032675.1|WP_145691022.1|841047_841650_-|LysE-family-transporter
MSLVVAGFVTGLSLIVAIGAQNAFVLRMAIARRFVLPVIAICVISDAVLITAGIAGIATILDHAPGAIDVIRWAGAAFLICYGLFAARRALKPSALSAAPGGAVTIGAALLTCLALTWLNPHTYLDTVLMLGSVANHYGNPGRWWFGAGAITASVVWFAALGYGARYLRAWFAKPSSWRILDGGVAVLMLGLGAGLVASA
>NZ_CP032675.1|WP_159416937.1|841722_842604_+|ArgP/LysG-family-DNA-binding-transcriptional-regulator
MDLDFAQLRTFTTVLDEGTFEGAAAVLRVTPSAVSQRIKSLEQHVGQVLLRRTRPVSATAAGEVVMRLARQVARLEQDASEELGLGADTGSYATIPLVVNADSMSTWMLRALARMPVRYRALFELHREDEFHSTDLLRDGTAMAAVTSVPEPVQGCTSEKLGAMRYHAMASVDFAERWFPEGMTPTELREAPMLTFDRKDDMQDRFVRKRTRRRLNPPRNYVPGALEFVEAARLGLGWAMLPDAMVADTTDLVSLAPDDPIAVPLYWQRWRLDSPVLDALTDAVRRTAREVLH
>NZ_CP032675.1|WP_159416938.1|842684_843782_-|extracellular-solute-binding-protein
MKTRKVALTALSVVLATTLAACGGGDSDGVTSQAEVDTSEGLVIDGETIADKETYEVAKSQTLSLYSSYQESNEQAFIEAFTRDTGIKVDLMRLVPARLAERVLSEQGAGRLNADVIRTSDYDIVDSFTDADVWNPYIVPGTEELEEVVIQDGNFSRVTNVVQTFGYNTRAITEEEAPTSWADLLDEKWRGKIGISQGATGGSNVALNWFVEEKLEDGYWEKLAALQPTIYDGAGQKLTAFARGEVPIATTGSASVNVTATEDKAPIDFVVPEEGFVTFDYYLGRTATAENAEAAEVFMNYNFSKRGQELFTELGDYSVRPDVAPPTALGRELPPLDSDKVWRMPLTEVERQAEYSQHWAEAFNY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

343740 : 400498

Gordonia_phage(33.33%)

transposase,integrase

attL 336617:336632|attR 390946:390961

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
336617:336632	attL	NA	NA	NA	NA
WP_159419610.1\|343740_344979_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.3e-81	44.7
WP_024101627.1\|347092_347881_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.7e-32	33.9
WP_051032972.1\|348500_349160_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_016691934.1\|349254_350925_+	FAD-binding dehydrogenase	M1HTN0	Paramecium_bursaria_Chlorella_virus	8.2e-05	49.2
WP_157788863.1\|352243_353254_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_157788864.1\|353280_353550_+	hypothetical protein	NA	NA	NA	NA
WP_159419611.1\|354019_354961_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_159419473.1\|355062_355881_-	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.5e-12	27.9
WP_159419612.1\|355877_356903_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_159419474.1\|357025_358774_-	prolyl oligopeptidase family serine peptidase	A0A1V0SHT0	Klosneuvirus	1.7e-13	27.4
WP_159419475.1\|359167_359614_+	hypothetical protein	NA	NA	NA	NA
WP_159419476.1\|361017_362001_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_016691947.1\|362018_363443_+	YcaO-like family protein	NA	NA	NA	NA
WP_157788865.1\|363582_364542_+	hypothetical protein	NA	NA	NA	NA
WP_174247172.1\|364525_366172_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.8e-17	24.6
WP_174247173.1\|366168_367857_+	ABC transporter ATP-binding protein	A0A1V0SD74	Indivirus	2.6e-11	27.1
WP_159419477.1\|368064_368241_-	hypothetical protein	NA	NA	NA	NA
WP_159419478.1\|368423_368588_+\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	3.8e-08	74.4
WP_159419479.1\|369307_371254_-	cutinase family protein	A0A166Y6Q9	Gordonia_phage	3.5e-07	34.1
WP_068166454.1\|374360_374699_-	Lsr2 family protein	A0A160DEV0	Gordonia_phage	2.4e-17	40.7
WP_159419480.1\|379938_380250_+	hypothetical protein	NA	NA	NA	NA
WP_026061884.1\|381056_381767_+	ParA family protein	D4HTX7	Vibrio_phage	5.3e-06	27.6
WP_068159124.1\|381766_382681_+	peptide transporter	NA	NA	NA	NA
WP_159419481.1\|382738_384547_+	hypothetical protein	NA	NA	NA	NA
WP_068159122.1\|384547_385342_+	hypothetical protein	NA	NA	NA	NA
WP_159419482.1\|387019_388186_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_159419483.1\|388196_389219_+	hypothetical protein	NA	NA	NA	NA
WP_159419615.1\|389473_389950_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1B3AZE5	Gordonia_phage	2.5e-52	65.1
WP_159419484.1\|392547_393978_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.8e-51	34.3
390946:390961	attR	NA	NA	NA	NA
WP_159419616.1\|395011_396403_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.5e-60	37.9
WP_159419485.1\|397012_397504_-\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	5.3e-29	47.6
WP_159419486.1\|397500_397821_-\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	1.5e-37	80.6
WP_159419487.1\|397893_398127_-	hypothetical protein	NA	NA	NA	NA
WP_159419488.1\|398456_399254_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	9.1e-55	45.3
WP_159419489.1\|399253_400498_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	3.7e-18	29.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP032675

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP032676

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection