CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP034285	Vibrio parahaemolyticus strain 20140624012-1 chromosome I, complete sequence	0 crisprs	WYL,DEDDh,DinG,cas3,csx1,csa3,RT	3
NZ_CP034288	Vibrio parahaemolyticus strain 20140624012-1 plasmid pVPHB2014-2, complete sequence	0 crisprs	NA	0
NZ_CP034287	Vibrio parahaemolyticus strain 20140624012-1 plasmid pVPHB2014-1, complete sequence	0 crisprs	PD-DExK	0
NZ_CP034286	Vibrio parahaemolyticus strain 20140624012-1 chromosome II, complete sequence	3 crisprs	cas3,DEDDh,WYL,csa3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

575245 : 592638

uncultured_Mediterranean_phage(20.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005455581.1\|575245_576886_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	4.2e-155	52.4
WP_140103762.1\|576964_578266_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.5e-134	59.2
WP_005455577.1\|578891_579173_+	cell division protein FtsB	NA	NA	NA	NA
WP_140103986.1\|579174_579879_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	5.9e-05	23.6
WP_005380896.1\|579896_580373_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_140103985.1\|580419_581463_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_005478553.1\|581462_582239_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.0e-66	52.4
WP_005455562.1\|582238_582865_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.3e-35	52.1
WP_005455560.1\|582879_583803_+	peptidoglycan DD-metalloendopeptidase family protein	D7RWE0	Brochothrix_phage	4.1e-06	35.2
WP_005478546.1\|584951_587513_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.3e-33	23.7
WP_140104007.1\|587597_588080_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.3e-27	48.7
WP_005478550.1\|588279_589323_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	8.1e-112	60.7
WP_005455548.1\|589446_589914_+	recombination regulator RecX	NA	NA	NA	NA
WP_140104006.1\|590055_592638_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	7.7e-79	37.9

DBSCAN-SWA_2

1608044 : 1616367

Vibrio_phage(90.91%)

coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159404115.1\|1608044_1609187_-	assembly protein	O88128	Vibrio_phage	4.8e-214	99.5
WP_015975177.1\|1609183_1609498_-	DUF2523 domain-containing protein	O88125	Vibrio_phage	8.0e-47	100.0
WP_029811602.1\|1609499_1611029_-	methyl-accepting chemotaxis protein	O88107	Vibrio_phage	1.3e-153	93.5
WP_015975175.1\|1611160_1611394_-\|coat	major coat protein	O88142	Vibrio_phage	1.0e-30	100.0
WP_015975174.1\|1611404_1611650_-	hypothetical protein	A0A1W6UH23	Vibrio_phage	1.2e-37	100.0
WP_015975173.1\|1611661_1612015_-	DUF1293 domain-containing protein	O88148	Vibrio_phage	2.9e-61	100.0
WP_015975179.1\|1612018_1613227_-	DNA replication initiation protein	Q7DKP2	Vibrio_phage	3.2e-245	100.0
WP_005488200.1\|1613150_1613366_-	hypothetical protein	A0A1W6UGD1	Vibrio_phage	1.8e-34	98.6
WP_159404116.1\|1613362_1613974_-	hypothetical protein	A0A1W6UG66	Vibrio_phage	2.8e-104	97.0
WP_025639340.1\|1614100_1614469_+	hypothetical protein	R9TE55	Vibrio_phage	2.4e-42	71.1
WP_159404117.1\|1614636_1616367_-	response regulator	A0A1V0SGX0	Hokovirus	2.3e-42	31.0

DBSCAN-SWA_3

2561337 : 2568039

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005440184.1\|2561337_2561808_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3
WP_005496254.1\|2561977_2563087_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.5e-63	39.6
WP_005483039.1\|2563256_2563910_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.6e-33	37.5
WP_140103227.1\|2563922_2565047_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.0e-48	36.0
WP_005482986.1\|2565054_2565504_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_017448803.1\|2565631_2566882_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.1e-98	47.9
WP_005483011.1\|2566899_2568039_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.3e-62	41.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP034286

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP034286_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP034286_1

336194-336291

Orphan

Consensus_repeat	Method
TATTTTTAAAATGCCTTTTCAAAAA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP034286_1

>merge|NZ_CP034286|1|336194-336291|CRISPRCasFinder
TATTTTTAAAATGCCTTTTCAAAAATTTGAAACCGCGCAATTAAAGAATCCAGAAAAACAAGATCGCAATCAATATTTTTAAAACGCCTTTTCAAAAA

>NZ_CP034286|1|1|336194-336291|CRISPRCasFinder
TATTTTTAAAATGCCTTTTCAAAAA	TTTGAAACCGCGCAATTAAAGAATCCAGAAAAACAAGATCGCAATCAA
TATTTTTAAAACGCCTTTTCAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP034286.1\|WP_005482867.1\|333400_335269_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
NZ_CP034286.1\|WP_159404257.1\|330930_331737_+\|arylamine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366312
NZ_CP034286.1\|WP_005482845.1\|343404_344082_+\|porin	unknown	unknown	gnl\|CDD\|368776
NZ_CP034286.1\|WP_159404258.1\|338776_339688_+\|alpha/beta-hydrolase-fold-domain-containing-protein	unknown	unknown	gnl\|CDD\|223730
NZ_CP034286.1\|WP_159404259.1\|341535_343275_-\|transporter	unknown	unknown	gnl\|CDD\|271371
NZ_CP034286.1\|WP_005460834.1\|340727_341351_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|235577
NZ_CP034286.1\|WP_159404255.1\|326175_326580_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034286.1\|WP_005464972.1\|331817_332687_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176159
NZ_CP034286.1\|WP_005497702.1\|335352_336150_-\|DNA-binding-transcriptional-regulator-KdgR	unknown	unknown	gnl\|CDD\|185046
NZ_CP034286.1\|WP_005460779.1\|338063_338699_+\|RpiB/LacA/LacB-family-sugar-phosphate-isomerase	unknown	unknown	gnl\|CDD\|181746
NZ_CP034286.1\|WP_005467181.1\|337702_338023_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380366
NZ_CP034286.1\|WP_005464962.1\|329488_330637_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176260
NZ_CP034286.1\|WP_021821216.1\|332687_333398_-\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236392
NZ_CP034286.1\|WP_005482884.1\|339786_340716_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|238571
NZ_CP034286.1\|WP_005497706.1\|337170_337695_+\|YgjV-family-protein	unknown	unknown	gnl\|CDD\|378474
NZ_CP034286.1\|WP_005482833.1\|327680_328142_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|226429
NZ_CP034286.1\|WP_159404256.1\|328587_329427_-\|S-formylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|178061
NZ_CP034286.1\|WP_005464959.1\|326589_327681_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP034286.1\|WP_031417528.1\|344097_346326_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034286.1\|WP_005482916.1\|336390_337152_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	unknown	unknown	gnl\|CDD\|181605

Protein	Function_ID	Function_description	E-value
NZ_CP034286.1\|WP_005482867.1\|333400_335269_-\|CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	2.84814e-139
NZ_CP034286.1\|WP_159404257.1\|330930_331737_+\|arylamine-N-acetyltransferase	gnl\|CDD\|366312	pfam00797, Acetyltransf_2, N-acetyltransferase. Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30kDa. It facilitates the transfer of an acetyl group from Acetyl Coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (M. tuberculosis, M. smegmatis etc) to man. It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat Tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid.	1.72997e-97
NZ_CP034286.1\|WP_005482845.1\|343404_344082_+\|porin	gnl\|CDD\|368776	pfam06178, KdgM, Oligogalacturonate-specific porin protein (KdgM). This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria Erwinia chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric.	3.08357e-24
NZ_CP034286.1\|WP_159404258.1\|338776_339688_+\|alpha/beta-hydrolase-fold-domain-containing-protein	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	7.60599e-18
NZ_CP034286.1\|WP_159404259.1\|341535_343275_-\|transporter	gnl\|CDD\|271371	cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	1.05249e-108
NZ_CP034286.1\|WP_005464959.1\|326589_327681_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	5.06677e-44
NZ_CP034286.1\|WP_005497706.1\|337170_337695_+\|YgjV-family-protein	gnl\|CDD\|378474	pfam10688, Imp-YgjV, Bacterial inner membrane protein. This is a family of inner membrane proteins. Many of the members are YgjV protein.	9.00507e-50
NZ_CP034286.1\|WP_005497702.1\|335352_336150_-\|DNA-binding-transcriptional-regulator-KdgR	gnl\|CDD\|185046	PRK15090, PRK15090, DNA-binding transcriptional regulator KdgR; Provisional.	0
NZ_CP034286.1\|WP_005460779.1\|338063_338699_+\|RpiB/LacA/LacB-family-sugar-phosphate-isomerase	gnl\|CDD\|181746	PRK09273, PRK09273, hypothetical protein; Provisional.	2.15977e-144
NZ_CP034286.1\|WP_005467181.1\|337702_338023_+\|cupin-domain-containing-protein	gnl\|CDD\|380366	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain. This family includes bacterial and archaeal pectin degradation protein KdgF that catalyzes the linearization of unsaturated uronates from both pectin and alginate, which are polysaccharides found in the cell walls of plants and brown algae, respectively, and represent an important source of carbon. These polysaccharides, mostly consisting of chains of uronates, can be metabolized by bacteria through a pathway of enzymatic steps to the key metabolite 2-keto-3-deoxygluconate (KDG). Pectin degradation is used by many plant-pathogenic bacteria during infection, and also, pectin and alginate can both represent abundant sources of carbohydrate for the production of biofuels. These proteins belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	1.13072e-54
NZ_CP034286.1\|WP_005464962.1\|329488_330637_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
NZ_CP034286.1\|WP_021821216.1\|332687_333398_-\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|236392	PRK09146, PRK09146, DNA polymerase III subunit epsilon; Validated.	1.36834e-38
NZ_CP034286.1\|WP_005482884.1\|339786_340716_+\|sugar-kinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	1.15929e-102
NZ_CP034286.1\|WP_005464972.1\|331817_332687_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176159	cd08470, PBP2_CrgA_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding domain. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 1. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.14139e-108
NZ_CP034286.1\|WP_005482833.1\|327680_328142_-\|oxidoreductase	gnl\|CDD\|226429	COG3915, COG3915, Uncharacterized protein conserved in bacteria [Function unknown].	3.9997e-40
NZ_CP034286.1\|WP_159404256.1\|328587_329427_-\|S-formylglutathione-hydrolase	gnl\|CDD\|178061	PLN02442, PLN02442, S-formylglutathione hydrolase.	3.66019e-142
NZ_CP034286.1\|WP_005460834.1\|340727_341351_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	4.28455e-121
NZ_CP034286.1\|WP_005482916.1\|336390_337152_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	gnl\|CDD\|181605	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD.	0

>NZ_CP034286.1|WP_005497702.1|335352_336150_-|DNA-binding-transcriptional-regulator-KdgR
MKGATMEKSTQPEAVSSVLKVFHILQALGEQKAIGVSELSQRLMMSKATTYRFLQTMKSLGYVSQEGEADKYSLTLKLFELGAKSLEYVDLIELADKEMRHISEQTNEALHLGALDENAIIYIHKIDSGYNLRMQSRIGRRNPLYSTAIGKVLLSERDESFVRDVLSDVEFIKHTEKTLENTDQVLEELAKVRDFHYAEDNEEQEPGLRCIAAPIYDRFGQIIAGLSISFPTIRFDEERMEYYVGLLHQAGKNISEQLGYHDYPA
>NZ_CP034286.1|WP_005482867.1|333400_335269_-|CBS-domain-containing-protein
MGTSVTPNIFDFLIKIDPFDKLPEPVVESIANSVKVKYLVRGETIGFSALCDQRYLYIIRTGAIEQRTPNGELRARLGQDDQFGFTFLDPLENAEDGYQAEAIEDSLLYLIPHSELKLVSEEHPEFADYFAAQANVRLSSAVKYVCRKEEKGLFFRTVGEIASENIAIVDVNDSIRSVAQTMCGKQRSSCAVVMKEGEIIGLVTDRDMTKSVVAQDMDTNQPIADVMTPNPVLIEDDAKVIQAISLMLQYNIRCLPVVHGKQVKGLLTTTHLVHNHRTQSLFLIEKIKYASSLNALAALKEERQTIFQALVESGVSAEIQGRVMSMIMDAFTRRIIQLNEELLGPPPCDYAWLVAGSHARNEVHMLSDQDSAIVLSDDATEEHKLYFTHLAMRVCNGLAACGYPLCDGKYMAASPKWCQPIRRWKEYYQKWVASPEYNKLLSISVFLEVRAIHGNREFVDQIQQHLHDCIQKSPSFIPALVRDAIDTQPPLGIFNNLVLEKGGENSNTLNIKKYALNLIIDLARIFSLAAGGSLTGTEERFRYAAQHGTLSKDSVENIIGAYRFITQVRFRHQLNAILAGTTPDNHIAPDDFSSFERKHLKDAFKIISELQDVAKLKFVKGA
>NZ_CP034286.1|WP_021821216.1|332687_333398_-|DNA-polymerase-III-subunit-epsilon
MIKRWFKRWETPLSPEQKRQAIHVIDDWPMVLKDYLQRPLVDDSTTLRDLSFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYICHGQFIKPETAKINGLTPQDLAKGLPLDEGMNRLLERITGKVVLAHGCCIEKAFIHAYFSSRYQVEDFPAYFVDTLQIEKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAELFLVQSKKLTALPDVTLRQLMR
>NZ_CP034286.1|WP_005464972.1|331817_332687_+|LysR-family-transcriptional-regulator
MANWEGVSEFVAVAETNSFTGAAAKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLSEAGQLYYQQCKHLVEGLELAELAVTQMQTEPRGLLRVTAPVTYGEMNLAPLLHQFLEKYPRVDLDLVLTNQKLDLIEQGVDVAIRLGRLQDSSMIAKRLSSRQTYVCASPMYLERFGEPHTLSELGRHQCLVGSVDYWHFKENKRDKSLRVSGRIKCNSGFALVDAAKRGLGLVQLPDYYVQEALDSGELVEVLTDYRDDREGIWALYPQSRNLSPKVRLLIDFLAQELA
>NZ_CP034286.1|WP_159404257.1|330930_331737_+|arylamine-N-acetyltransferase
MNKTDLNAYLTKLGLPSELPADLESLHKIHVAQHRCLPFENFDISLQRGISVEIEDIIQKTVYHSRGGYCFELNGLMLDVLKTLGFEARSLLGRVHVMGTPTGRSHQITLVTLDEQAWIVDVGFGSNTPRAPLPFILNQVIQTDLQTFRFVEDAQFGYFLQVLSTDGTDTWNNLYSFDLEFVFAGDITCGNFFTSTSPHSRFTSARVAAKATESGLVTLLNYTLKYTSEGEQTELELEPGQAYLDALKEYFGIELDAQYGDLRPLPDA
>NZ_CP034286.1|WP_005464962.1|329488_330637_-|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase
MTLEIKPGQTHIKSKAMVAWAAGEPLKMEEVDVQLPKAGEVLVRIVATGVCHTDAFTLSGDDPEGIFPSILGHEGGGIVEMVGEGVTSVEVGDHVIPLYTAECGECKFCKSGKTNLCQAVRETQGKGLMPDGTSRFSINGETIFHYMGCSTFSEYTVLPEISLAKVNKQAPLEEVCLLGCGVTTGMGAVLNTAKVEKGDTVAIFGLGGIGLSAIIGARMAGASRIIGIDINESKFDLAKQLGATDVINPQKFDKPIQEVIVEMTDGGVDYSFECIGNVNVMRQALECCHKGWGESVIIGVAGAGQEISTRPFQLVTGRVWRGSAFGGVKGRSELPEIVNRYMAGEFGLQEFITHTMGLEDVNKAFDLMHEGKSIRTVIHMDK
>NZ_CP034286.1|WP_159404256.1|328587_329427_-|S-formylglutathione-hydrolase
MTIENVSQTKVFGGWHKQYTHDSKALNCTMRFAIFLPPNATKSNPVPALYWLSGLTCTDENFMQKAGAFRMAAELGIAIIAPDTSPRGEGVADDASYDLGQGAGFYLNATQAPWSLHYHMYDYVTQELPAIIEANFPVSDVKSISGHSMGGHGALTIGLKNPTLYRSISAFSPISNPMQCPWGQKAFTAYLGTDIESWKQYDASELLKKEKSPLPILVDQGGADGFLSEQLKPEVLLAAAKQHGSELNLRMQSGYDHSYYFISSFIDNHLNFHAKYLFA
>NZ_CP034286.1|WP_005482833.1|327680_328142_-|oxidoreductase
MKKIVSLSLLLFAPFLSANSITFSSPQQPSVTLKLEELQSLPTTSYTTDLPWIQQSSEFLGVKLSTLLTHVYGSIPEQVDIGSLNNYHSTLSRKDIVRYQPILAYQQDHHYIKVRNKGPYWVIYPLSQYPELDHNEYHAQMVWQVNEMKIKQK
>NZ_CP034286.1|WP_005464959.1|326589_327681_-|GGDEF-domain-containing-protein
MKLSEAYPIKQKNYSTTSKMLLLVFATSLLLANVILLQQTRVLAQSFTDEQKQATWFLFQLSKELSELVSEARRLDENVLKIEGAELQYELAWSRFDLLINSKDVYTFFSRNHIQQYFLQLFNEFKELEPLLVEAKTGDSQAAAQFYRATQTLYLNLVEFVNQNFRLTSQVYETQKDESQRLMKAQYMLFATFVLSILSLTYFFYRESHFHRKLALSDPLTGLGNRNALFVTLRNNTRNRTAFSLCLLDLNGFKNVNDTYGHQAGDTVLCEIAKRLKDMNIDSFSTYRMGGDEFAVVIESSDVDAEEAKKHIHSVFDTPVLNANNVSSLSTSIGVAHYPSDSDNVDFLISIADKRMYKMKFQR
>NZ_CP034286.1|WP_159404255.1|326175_326580_-|hypothetical-protein
MMRKFMQVLLLLAVIAAGVLAWVFIPSHETIGQKTLEQALNDDYSLVGHRIYSTDPDAGNRFGYFVLATGQSIEEQEPFLVTSDQFIRMEKTDDNTLSVTVNGRIYHYHNDLWVPKSDGKLQHFLVSATAKYVR
>NZ_CP034286.1|WP_005482916.1|336390_337152_+|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD
MILDSFNLEGKVAIVTGCDTGLGQGMALGLAKAGCDIVGVNISEPTETIEKVEAEGRKFVDIRANLMKLDDIPTIVDRAVTELGRIDILVNNAGIIRRNDAIEFSEQDWDDVMNINVKSVFFMSQAVAKQFIAQGEGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMANEWASHGINVNAIAPGYMATNNTAALRADEQRNKEIVDRIPAARWGTPEDLAGPCVFLASKAADYINGYTIAVDGGWLAR
>NZ_CP034286.1|WP_005497706.1|337170_337695_+|YgjV-family-protein
MVDTTILAQALGFISFGLGFSVFYQKNDRHLKILMLIFNLNHLLHFLLLGSMVSALSALLSALRTTTAIFVSSKRVAAVFIVISLVSGFWVAEQWRDLWPIIGTVIGTYSVFCLSGIRMRIGFLLGASCWLTNNILVGSIGGTLLEMTVIVMNLLTIYRLHRQQSESMINQSSY
>NZ_CP034286.1|WP_005467181.1|337702_338023_+|cupin-domain-containing-protein
MFVFNQDIPMEDLGEGISRKVLAHSDNMMSVEVHFEEGAIGAMHSHPHEQLTYVLSGEFEFTIGDEKKIVKTGDTMYKEPNIEHGCVCLKAGVLIDTFTPMRKDFV
>NZ_CP034286.1|WP_005460779.1|338063_338699_+|RpiB/LacA/LacB-family-sugar-phosphate-isomerase
MKIALMMENSQAAKNAMVAGELNSVAGGLGHDVFNVGMTDENDHHLTYIHLGIMASILLNSKAVDFVVTGCGTGQGALMSCNLHPGVVCGYCLEPSDAFLFNQINNGNAISLAFAKGFGWAGELNVRYIFEKAFTGKRGEGYPIERAAPQQANAAILNNVKSAVAKDVVEGLRAIDQELVKTAVGSTQFQECFFAHCQVPEIAEYVKSLLD
>NZ_CP034286.1|WP_159404258.1|338776_339688_+|alpha/beta-hydrolase-fold-domain-containing-protein
MHVAPITSLQTWFPEHPVLPLWSEPQIPSHLVQSYQERNPNELLPDRAVFDITHPEIVVFEPEQSNGMGILLMPGGGYQRVSVDKEGADSAHVLNQAGFTVFVMTYRMPNEGHEFGSWTPLADAQRAMRLVRRLPLASHLSSIGVLGFSAGGHVAASLATNHALDIYPLQDEAERVSAKPDFCALMYPVISMNTDIAHMGSRAELLANLERESDLLRFSLEKQVTSDMPPCFLLHASDDTAVSVENSVVFWQALRQHEISTEMHLFEQGKHGFGIRDAQGLPVAAWPQLLAAWLKNLAEKARR
>NZ_CP034286.1|WP_005482884.1|339786_340716_+|sugar-kinase
MNPISRVAIIGECMVELKKHDGVLQQGFGGDTLNTAVYLSRLTKQHGVETSYVTGLGHDPFSREMLTAWREEGINTDMVYLSEDKLPGIYAIETAEDGERSFFYWRNDAAAKYWLRERALLSLVKDLCQHQMIYLSGISLAIISDDCRQMLIELLTMCRKEGVKIAFDNNFRPKLWPNIEQARDFYSKILSVTDMAFLTFDDEVMLWGDKHEDEAISRTKNFGVKEIIVKRGADDCFVVTQDQQHTVAALKVDAVVDTTAAGDSFSAGYLAKRILGGDVAESALAGHKVAGTVIQHRGAIIPSQAMPTI
>NZ_CP034286.1|WP_005460834.1|340727_341351_+|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MKDLNQQLSEIKVVPVIAIKDAGKAVKLAQVLIENGLPCAEVTFRTEDAALAIKNMREAYPEMLIGAGTVLTSAQVDEAIDAGVDFIVSPGFNPTTVKYCQQRNVTIVPGVNNPSLVEQAMEMGLRTLKFFPAEPSGGVAMLKALSAVYPVKFMPTGGVSPSNVKDYLSISSVLACGGTWMVPGDLIDNEQWDELAKLVREVAGIIE
>NZ_CP034286.1|WP_159404259.1|341535_343275_-|transporter
MTLLDSMIVMIYLLFIGIAAWLFRRFSTSSNDFLQGGGTMMWWMAGATAFMTQFSAWTFTGAAAKAYEDGISVMFIFWGNALGFFVAAAFFARRYRRLRVETAMEVIRVRFGHTSEQLFTWLSFPLTLIACAIWMNGLASFFSAVFAIEMSTTILAMGVIVTLIAVSGGAWTVSVTNVIQLILLIAITLVIGYTALQRFDSPSEVFAHATPIYGEQIRMPSLFVMWAIAMLLQQTMSNNHTLSCYRFLTTANDKDATKAAFVAGVLFVFAPVLWFMPAWFVAAQNIDLLAIYPALEQSANNAAYLYYIQHYMPQGLLGLVMVALVAATIAPLSSAHNRNAGIVVKSLYQVWFNPNATSRQQLMVGKIATVVSGVLATATALLLASVESYSLFDMMIVFAAFIQMPINIPSLLALVSLKTPNWSGWATVMVGCAVSLFMMFIFDVQWLSSLPLTPRESKDLSVVATLAVHLLVTGGFFLFTRVFYAKESPSIQQSRTALAIQLATPISDEELSPINHKQGLYVGSITALAGMLLILAGVVLTGSSQSIFVAIGCIVLLFSLFLLQPTQHSKRTWQKQKTK
>NZ_CP034286.1|WP_005482845.1|343404_344082_+|porin
MKVRYLTSALLLAMTSGLAAAASVDIRHEYVPDRDGDEHRDRIYVSHRFDNQIGFSVEAKWNYKDGHMGNAGHETGVSYRWKATDNFSLTPGINIDASPSGASVFKYNLTGAYKINDEWDVAARIRHGYKNTDDSRYNQLNLYANRKFEWGKLGVEAEYKDIHGGEGGWKDKGHDQLIDFKGEYTKLESGVIPFFAIAAITHKGDGSEFKDEYVPRFRVGLKYNF
>NZ_CP034286.1|WP_031417528.1|344097_346326_+|hypothetical-protein
MKKHTLALCLAAILAPAAHAAEIKVEDLTWKAITFGQSTDMNFGSTILPEKVGVNQVTVNGEAVAAGKLASTFTIESRGGKLANSHEGLTFYYTELPTDVNFTLSADVVLEQLGPETGATPNRQEGAGLMVRDILGAERLVPQPEGHEEFPSASNMVMNLMRSHTRTNDGMTNINASFREGVYQPWGTPGNRLSRVDYVEGVPYGTAETYRMTLTRTNDGFKVSYRNGEKFVEQAVKGANANIVEMQNSDSQYVGFFASRNAKMTVSNVDLQLAAADTVDAPKYAAKQGELVFQIASSPRSATKEYPVQARANYSGEFEVLHNGKVVAKQTVTAGELFSQWLTLDSGANQMEVRFTAIDGPNKETQAHRYSVDVVSLPDPMTLYVAPNGSDKGNGSQAQPLDLATAVELLPAGGTIILKDGDYQGMEIPLTASGSVDKLKHLRAEGDNVRFVSELRHEANYWHYQGIEVAGAQFIVHGSHNTFEKMVTHGAPDTGFVITSPENIGRALWASYNQVIESESYNNMDPSQINADGFAAKMRIGDGNTFIRCLSHHNIDDGWDLFNKVEDGANGAVTILDSISFSNGRTLDVANKGGTIGNGFKLGGEGIPVPHVVKNSLSFNNNMDGFTDNFNPGALVLSDNVSIDNKRFNYLFRKSPYSGEIEQGTFTNNRSYRFHVSSKYDDVINSAKSTGNALVENGTTYTSDGKAVDSKTLAPLKQASVIDTQQAIPGKQEAMQLKQLIH

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Crispr_ID: NZ_CP034286_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP034286_2

889201-889334

Orphan

Consensus_repeat	Method
GGCGGTCGTCGTGAAGGTGGTTTCCGTGGTAACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP034286_2

>merge|NZ_CP034286|2|889201-889334|CRISPRCasFinder
GGTGGTCGCCGTGACGGTGGTCGTCGCGATGGCGGTCGTCGTGAAGGTGGTTTCCGTGGTAACCGCGAAGGTGGCAACCGTGGTGGTGAGCGTCGTGAAGGCGGTCGTCGTGAAGGTGGCTTCCGTGGTAACCG

>NZ_CP034286|2|2|889201-889334|CRISPRCasFinder
GGTGGTCGCCGTGACGGTGGTCGTCGCGATGGCGG	TCGTCGTGAAGGTGGTTTCCGTGGTAACCGCGAAGGTGGCAACCGTGGTGGTGAGCGTCGTGAA
GGCGGTCGTCGTGAAGGTGGCTTCCGTGGTAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP034286.1\|WP_023624353.1\|892913_894227_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|206779
NZ_CP034286.1\|WP_140103658.1\|899424_900594_-\|isovaleryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173845
NZ_CP034286.1\|WP_005462115.1\|882095_882776_+\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239534
NZ_CP034286.1\|WP_005483368.1\|894512_895391_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP034286.1\|WP_005483382.1\|891441_892635_+\|acetate-kinase	unknown	unknown	gnl\|CDD\|183528
NZ_CP034286.1\|WP_017448089.1\|885146_887153_-\|exoribonuclease-II	unknown	unknown	gnl\|CDD\|179920
NZ_CP034286.1\|WP_140303727.1\|876592_878305_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370692
NZ_CP034286.1\|WP_140103655.1\|882829_883657_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS-family-protein	unknown	unknown	gnl\|CDD\|270371
NZ_CP034286.1\|WP_021452597.1\|878362_879436_-\|DUF4297-domain-containing-protein	unknown	unknown	gnl\|CDD\|372918
NZ_CP034286.1\|WP_025502700.1\|896902_897748_-\|gamma-carboxygeranoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235664
NZ_CP034286.1\|WP_005483343.1\|891283_891409_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034286.1\|WP_159404313.1\|880282_881596_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271184
NZ_CP034286.1\|WP_025542454.1\|879906_880290_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034286.1\|WP_140103657.1\|897785_899390_-\|methylcrotonoyl-CoA-carboxylase	unknown	unknown	gnl\|CDD\|178415
NZ_CP034286.1\|WP_015313061.1\|884271_885075_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NZ_CP034286.1\|WP_021452604.1\|896003_896906_-\|hydroxymethylglutaryl-CoA-lyase	unknown	unknown	gnl\|CDD\|180206
NZ_CP034286.1\|WP_011106309.1\|889542_891144_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
NZ_CP034286.1\|WP_011106308.1\|883868_884267_+\|DUF3024-domain-containing-protein	unknown	unknown	gnl\|CDD\|371425
NZ_CP034286.1\|WP_140103656.1\|895416_895968_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227700
NZ_CP034286.1\|WP_005479470.1\|879694_879892_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP034286.1\|WP_023624353.1\|892913_894227_+\|PAS-domain-S-box-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	6.55784e-46
NZ_CP034286.1\|WP_005462115.1\|882095_882776_+\|MaoC-family-dehydratase	gnl\|CDD\|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	4.13783e-69
NZ_CP034286.1\|WP_140103658.1\|899424_900594_-\|isovaleryl-CoA-dehydrogenase	gnl\|CDD\|173845	cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.	0
NZ_CP034286.1\|WP_005483382.1\|891441_892635_+\|acetate-kinase	gnl\|CDD\|183528	PRK12440, PRK12440, acetate/propionate family kinase.	0
NZ_CP034286.1\|WP_017448089.1\|885146_887153_-\|exoribonuclease-II	gnl\|CDD\|179920	PRK05054, PRK05054, exoribonuclease II; Provisional.	0
NZ_CP034286.1\|WP_140303727.1\|876592_878305_-\|hypothetical-protein	gnl\|CDD\|370692	pfam09787, Golgin_A5, Golgin subfamily A member 5. Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.	2.48845e-05
NZ_CP034286.1\|WP_140103655.1\|882829_883657_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS-family-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.68719e-86
NZ_CP034286.1\|WP_021452597.1\|878362_879436_-\|DUF4297-domain-containing-protein	gnl\|CDD\|372918	pfam14130, DUF4297, Domain of unknown function (DUF4297). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is typically between 207 and 221 amino acids in length.	1.51956e-49
NZ_CP034286.1\|WP_025502700.1\|896902_897748_-\|gamma-carboxygeranoyl-CoA-hydratase	gnl\|CDD\|235664	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.	4.43693e-98
NZ_CP034286.1\|WP_159404313.1\|880282_881596_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271184	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain containing six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	5.50817e-49
NZ_CP034286.1\|WP_011106308.1\|883868_884267_+\|DUF3024-domain-containing-protein	gnl\|CDD\|371425	pfam11225, DUF3024, Protein of unknown function (DUF3024). This family of proteins has no known function.	1.22418e-20
NZ_CP034286.1\|WP_140103657.1\|897785_899390_-\|methylcrotonoyl-CoA-carboxylase	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
NZ_CP034286.1\|WP_015313061.1\|884271_885075_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	5.04109e-25
NZ_CP034286.1\|WP_021452604.1\|896003_896906_-\|hydroxymethylglutaryl-CoA-lyase	gnl\|CDD\|180206	PRK05692, PRK05692, hydroxymethylglutaryl-CoA lyase; Provisional.	8.6491e-178
NZ_CP034286.1\|WP_011106309.1\|889542_891144_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	7.92154e-91
NZ_CP034286.1\|WP_140103656.1\|895416_895968_+\|hypothetical-protein	gnl\|CDD\|227700	COG5413, COG5413, Uncharacterized integral membrane protein [Function unknown].	2.82199e-24
NZ_CP034286.1\|WP_005483368.1\|894512_895391_+\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.96771e-12

>NZ_CP034286.1|WP_017448089.1|885146_887153_-|exoribonuclease-II
MFQDNPLLAQLKQQIQENLPKKEGSIKATDKGFGFLEVDSKTSFFIPPAYMKKCIHGDKVVAIIRTENEREVAEPQELIEQSLTRFIGRVKMFKGKLNVVPDHPQLKKLSLKAKLKKGLKPDNFAEGDWVVAHLVRHPLKGDNTFFVEISEKITDADDKIAPWWVTLAQNDLPNSEPAGIENWELKDDADLERIDMTHVPFVTIDGESTKDMDDALYAKKTESGDFELTIAIADPTAYITPEDEMDKVARERGYTIYLPGRNIPMLPRDLADNLCSLIEGEIRPAICCTVTVSKDGVIGDDIKFFAANIKSHARLAYDHVSDWLENGNSDAWQPSEEIATIVRDLYEFSLARAEWREKNAVVFPDRPDYRFELSEDNDVIAIHADMRRSANRLVEESMITANICAGRTLREKFETGVFNTHAGLKPEKIEEVVQLVNPEGTLEFTAESIATLEGFAALRRWLAVQETSYLDNRIRKFQAYSEVGNQPLPHYAMGLDIYATWTSPIRKYGDMINHRMLKAVILDKEPVQKPDDQVGEELALHRKHHKIAERNVSDWLYARTLADEPSKQTCFTGEIFDINRAGARVRLLENGAAAFIPGALILDNKERIECNGDNGTISIDKEVVYKLGDTLEIVLADVNQENRSLVAKPTQVFADQPAAQTEQTVSEE
>NZ_CP034286.1|WP_015313061.1|884271_885075_-|helix-turn-helix-domain-containing-protein
MPNIEIIRFNHFTARKSERYTATHNGLYVVEEGALVVHQPNGEQFELQAGDFTLYNSSDLRSAEAIPGENGFKAVALVFDISLFCEFKKAHPGLHSEAEHRRFYPFSPESNSEITQLKNTLLVLASRNAPDYTQSHIAMALLSLMVEVQPDILSIIDDASSLTASQKAIKYIEKNIEKDITLEGLAAHMSMSIATLKRRLAAENLSFSQILKVKRINYAATQLRVSQKSITEIAFESGFKSAAHFSTAFKSIYNITPKDFRNQVVRG
>NZ_CP034286.1|WP_011106308.1|883868_884267_+|DUF3024-domain-containing-protein
MALGCILKTTYQENVMSVSQMATSRLYKLVQILCSARNANLPVEQGKCLYEPIENGVELHHAHFLLDSQHSEYTSPIAKILFDSQTQLWRFYVPASRSEDIRWIPYKKLPHSHTLEDLLAELESDPQACFWE
>NZ_CP034286.1|WP_140103655.1|882829_883657_-|phosphate-ABC-transporter-substrate-binding-protein-PstS-family-protein
MLRFTVATLLAMAVSLPSAMAKEVNISGSTSVARVMDVLAEEYNKTHPDNYIAVQGIGSSAGITMVNKGVVKLGMSSRYLTESEKGEDLNVFPIAYDGLAVVVNRTNSVTNLSAQQLFDIYKGEIKNWKEVGGADQPIAVVTREASSGSRYSFESLLGLTKIINDRLVSDISPNNLVVNSNSMVKTIVNHNTRAIGFISVGSVDLSVKAIQFNGIEPTAANIANHKYKLARPFLVLYKVDSLEQAGKDFVAFLKSEAGQKTIADYGYIPVKNFNQ
>NZ_CP034286.1|WP_005462115.1|882095_882776_+|MaoC-family-dehydratase
MKVTNLFKDKVDAISAHQSEFMNWMSPTLRDYWSDFLGKAQNSFLFSNVRDHNQPAVNEEVAPQPAPIVLQPEAQKLYDELSGKIGEVIHTGDWVHVSQERINQFGAVTEDMQWIHTDPERASVESPFKTTIAHGFLTLALLPKLTDSVDADKPLFPTAKLVVNLGLNQVRFPYPVKAGNNVRAVSTLTKVTPIKKGLEIEREIKVEIEGVRRPGAVVVSVIQLHF
>NZ_CP034286.1|WP_159404313.1|880282_881596_-|tyrosine-type-recombinase/integrase
MYLIKLSNNVFYTRISTPAILQTSLGYPREIRLSLFTKYRRLATKRNAQLASAIHTLHEQALAENIPYTDFKISLSTKVAEIRQQFCSNLPHVDNPQSKCTSRSIETRAMPAPAPEESVNSRLIGAQELITELNNFIRSKRLEQVTPLTLTQLNQRCTNFLNYLAKQEICLSAKAANTYRDRLIEKGLSAKTVKEYIAANKQFFDYCERIELIEKNVFKAIKAPKSRGTKASQQRDRWQLKDLKRLFSSSEFRKKDVQFQWTTKVQVYQGCRPSEVCQLTTNDIQVIDGVSCITISDSDTEQRLKTSNAVRTIPLHNQLIKEGFLDYVQERREQKQKQLFDYKPHGENKDWSFRYRTNLGKLQTAMGMKPNARPTAYSFRHTFIDELKIANTPEHIVAEIVGHSHPNITFGRYGKQAKIKQLNEAVNKFPSVEVKYA
>NZ_CP034286.1|WP_025542454.1|879906_880290_-|hypothetical-protein
MRKLANFELKAILEAIEHADFTNNYDFFNLLTCGISIEQIRGVYRLRSALQRDSSKTIFDYPSFLAQIYANVESFYSVKEALGYEVDAQEIEREDKLIFLMQFLAENKMQLSIDRRNTPYSIAINLG
>NZ_CP034286.1|WP_005479470.1|879694_879892_-|hypothetical-protein
MEDIHEQLGVSKSYLNDTFAMIRIAKDGEVWVQYSDKLDIPTGIKAVRIAAEVLKIIATESTNYN
>NZ_CP034286.1|WP_021452597.1|878362_879436_-|DUF4297-domain-containing-protein
MADNPLAEAQRESAGASTFGKYNFQFHWALCQIIEKHKQKNEYALLIEHHEDVVIADSLDASSATFEFYQVKNQSATFTPANLTKRKKGSKEKLKSSVLGKLLESCINTQYEDRITKIGLVSSSGFSLKTDGDLTLDVIKVGDIAEEDLTTLTDNIQSELGITILPENLQFIVPNIQLKNQEDYVLSHFARLVDKLFPGALCNPVNIYRSVIDEMGRIGRIEYDYKEWTKLLENKSLTSTQVHDVIIQHTKHPCVDDLKSNFDDLASDLGWKSKQKRGFKNKLVLLALSRAGFMTSLDIELINLFQASHEKIDEESYSDDTTYLEALRNQAIADGLLARVNNEDELLLEIIYCLLKA
>NZ_CP034286.1|WP_140303727.1|876592_878305_-|hypothetical-protein
MKGLQFQRLVLLSDSKRTANQFTFPKRFNLVTGNDNSIGKSTLVKSLFWAIGCAPHFDSEWKSNDVKTILYFTVNQNKYIVSRYADGIYFGAEGSSLTKYSKITGQFAEDFAKVVGFDLKLANRTEGIDCPPPAFYFLPFYIDQKKSWDEPWNGFEGLGQYARFKQNLIKYFSGYLPKEHFDLEEEIFEQKSIEKEANQQVVRITEAIDLLKEIAPEQTVAITSDEFQSIQREIEEELASFSSSQSNLYELQSILANDIHELEQQHLIASASARELNEDYTFAVENIPSDSLECPLCGIEHDNSLLSRAGLLADKESIEQQADKIKSLLETKYQERDDLNQEISFVTAEIERINEKYLKEDSEEQQTEFEQAIHAVSQHKVNQNVTQKKESCQLQSKQANELQKKIKKEQNKLVKKATRDELNELFMGNLVESINSLSATGVNLDGVKAPMDYKKILGGGAAEGTRGTLAYQLAVLRQIDHANPCEIAPFVIDTPNQQEQAKHRYDQVMDVLTENIPKGYQVILCAMDNAALDNYKQDAHIIKLDNNRLLLHKPYAQLRAEYEQVVLSNS
>NZ_CP034286.1|WP_011106309.1|889542_891144_-|bifunctional-diguanylate-cyclase/phosphodiesterase
MPTIAFLLVILGLILLCWGWQMTKNICSKTEVPGWTWLLMLISCFIFAYAAFLHAIMKKPVASLLETGVSLLLFGGSIFVVLVIKWSNDSILELHSVAEREKRNAVHDSLTGLPNRKYCFELIDDRIQSGDPFSVILFDVVNFKQVNDAMGHFCGDQLLIQIGQRLQDKLKGSDKIFRVGGDEFVILTSSACEKTGTELIESLDCALSARFHLDEFQVSSRVVFGISTYPYDAISNDLLIKHADIAMYHAKRNGNLFAFYHDDMNVGAKYQLEISSRIQCALEKEEFQLYYQPLIDANTNLAVGFEAVIRWHDENGKTISPNDFIPIAERSNQVHNITMWVLGQVEKDLKTFIEKGIKLPVHVNLSAKDLSSNLLFHRLEKLLENNPQFADLISLEITETMAIDRVVELNPLIHQIKGLGIKISLDDFGTGYSSLSLLRDLPVDQIKIDRSFLCTANRTEGSRSIVENTIALAHGLGYSVVAEGVQDMDTLYFLRSRGCDIIQGYLFCPALPLNEVINWVNEHDDKQSHTRRA
>NZ_CP034286.1|WP_005483343.1|891283_891409_-|hypothetical-protein
MRFRAAYFLFAPLLFNNFLIFQQSFSESDLIEQILLIYSKF
>NZ_CP034286.1|WP_005483382.1|891441_892635_+|acetate-kinase
MSNSFVLVINSGSSSLKFAVIDSVSGDAVLSGLGECFGLSDARMSWKFNGEKKEISIEGDDSHHKIAIGKLVGLTEELGLAQDIVAVGHRIVHGGEKFTKTVRITEEVTQEIEKLADLAPLHNPAGAIGIRAAVEAFPSLPQFAVFDTAFHQTMPQRAFTGAIAKELYTDFGIRRYGFHGTSHYFVSREAAKMINKPIEESSFISVHLGNGASVCAINNGESVDTSMGFTPLSGLMMGTRCGDLDPGIIEYLLKKGWSQEKVFNSLNKASGFLGVSGLTSDARGILEAMEEGHEGAALAFQVFTYRVSKYIASYLAALDSFDGIIFTGGIGENSMPIRREILKNLKLLGFVEDVKGNEDARFGNAGVIATSELLGAKALVIPTNEEWVIAQQSVELL
>NZ_CP034286.1|WP_023624353.1|892913_894227_+|PAS-domain-S-box-protein
MFFNKSLQQENQRLKQELYSLQQIQQSLDEEMLRLTLDAKGNVTSANQKFLQQLSLSDKDILAKHISDLVPSNVRNTDHFYRMKQSVQAKAFWNGAFQITKGDGEEAWLRVVIQPVRNTSDQVESFFVFASELTRTITTSREYEDMLNALSRSMAVIEFTLDGTVLKANDNFLSTMGYKHEQIVGKHHRIFCLPEEANSSAYHDFWKRLASGQFVTDRFKRVDQYGSVVWLEASYNPIHNDRGELYKVVKFATNITQQVLQEQSMAQAAQLANEVSQETGTQTVQGRQVIGSTLEKMQTLSEQMQQANAAIEDLKAHSSKISELVNSISGIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAMRTNTTTDEIVSMVTENLERTNNAVALISQCQKEALDTLELSEKAGNVMNDIQDGASRVVEAVAQFNRTL
>NZ_CP034286.1|WP_005483368.1|894512_895391_+|DMT-family-transporter
MFNSERKATVILVATTMIAALGWIFSKETIQGLPPFGFIGLRFTIASLCLLPLCFRPLKAARLKDVLAASGVGLLLGGAVMTWIYAISISDTLGEGAFIMSLSMLFVPIVAWVMFQQRPQRIFWISLPIAVIGLACLSLAGGWKQSASQLWFLGAALILALHFNVNSKYSQKLPVLLLTCVQLFSAGCLGLLVSFLMESRPEQVDSSIWWWFALSTLLATSLRYVMQTMGQKFVQAGNAALIMILEPVWTVVLSILWYGEVLTANKLVGCLLILFSLVIYRTGGRFRFPKRA
>NZ_CP034286.1|WP_140103656.1|895416_895968_+|hypothetical-protein
MANTEHQETLDFLDKLSVCLYRAGISVFAIALVGLAALESQWLDGMDGRYRAVFAVFTIAGAMSASNIHVYSKSVRTIISWSGWIGMILMVCDPELNRVWLALGFIFVTFSGIALKESFCFKVLGLKLVPTLLVVTIFTLWFEQSTIVAISALLAGLIMAYLSIAKWRMPLHFDIGIKANYEV
>NZ_CP034286.1|WP_021452604.1|896003_896906_-|hydroxymethylglutaryl-CoA-lyase
MTLPTNVNIVEVGPRDGLQNESPVSTRTKIRLIDLLSDTGLSHIEAGSFVSPKWVPQMADSKEVMQNITRRASVTYSALTPNLQGLEQALDAGANQVAIFTSASEGFCQHNINCSITESLKRFEPLMVQADKYHIPVRGYLSCVVDCPYDGATSPTQVANISQALIELGCYEVSLGDTIGTGTPNRIKEMLESVLARIPNQRLAVHFHDTWGQALANIYQALSMGINTVDSSVAGLGGCPYAHGASGNVATEDVLYLCQGLGIETGVDLELLAKAGWMISDELQRQPTSKVSQALRHRME
>NZ_CP034286.1|WP_025502700.1|896902_897748_-|gamma-carboxygeranoyl-CoA-hydratase
MQERQPSIVPNAQRHNDVLWQVDEFGVATLTLNRTKKHNAFDACMIDLIIHRLDYLALRTDVRCLVLRSNGKHFSSGADLAWMQSMANSTRKENLVDAQSLARLMETLDAFPQPTIAVVQGSAFGGALGLICCSDIAIASHSAEFCLSEVKLGLVPATIAPYVMRAMGNRQARRYILSGEVIPAVKAQQFGIVHEVKEDDELESCVSEVVASLLLNSPDAMRKAKALCEQCHQNPIDSQLIRYTSQLIADIRVSPQGQDGLQAFLEKRPPSWVHQPDAEEE
>NZ_CP034286.1|WP_140103657.1|897785_899390_-|methylcrotonoyl-CoA-carboxylase
MAIIKSKTKPTDELFLSNQAAMEMLVEKLQKDIATIKLGGGERAIAHQQQKGKLPVRERISHLLDDGSNFLEIGQFAAWQVYDESIPCAGVVAGIGMIEGVQCMVIANDPSVKGGTYYPVTVKKHLRAQEIAQRCQLPCVYLVDSGGANLPHQSDVFPDKDHFGRIFFNQARMSAKGIPQIAVVMGLCTAGGAYVPAMADVSIMVKEQGTIFLAGPPLVKAATGEIVTGEELGGADVHCRKSGVADYYAENDEHALDLAREAIANANRPKPPKSDSAILPPRYNAEEMYGIVNANLRLSFDVREIIARIVDDSDFDEFKALYGRTLVCGFARIHGQLIGIVANNGILFSDSSQKGAHFIELCAKRKTPLLFLQNITGFMVGKKVEEEGIAKHGAKLVMAVACADVPKFTVIIGGSYGAGNYGMCGRAYDPTMMWMWPNARISVMGGEQAAGVLTQVRKEINQRRGEEWSEQEEHTFKESIIDLYETQGHPYFASARLWDDGIIDPKETRNVLAQALMAALNAPIPDSEFGIFRM
>NZ_CP034286.1|WP_140103658.1|899424_900594_-|isovaleryl-CoA-dehydrogenase
MKTSYIPLNFGLGETIDMLRDHVNAFASEHIAPIAADIDHYNQFPNHLWPLLGEMGLLGVTVSEEYGGAEMGYLAHVVAMEEISRASASVALSYGAHSNLCVNQIFRNGTPTQREKYLPKLVDGSHIGALAMSEVNSGSDVVSMQLKAEDKGDHFLLNGTKMWITNGPDADVVVVYARTDADAGSRGITAFIVERSFTGFSDAQKLDKLGMRGSNTSELVFNNCKVPKENILGSLNFGVEVLMSGLDYERVVLAAGPLGIMQACMDIVVPYVHERKQFGKSIGKFQLVQGKLADMYSRMNAAKAYVYTVAAACDRGECTRKDAAGVILYSAELATQMALDAIQLLGGNGYINEYATGRLLRDAKLYEIGAGTSEIRRMLIGRELFEESR

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Crispr_ID: NZ_CP034286_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP034286_3

1504458-1504553

Orphan

Consensus_repeat	Method
AAAGGGATAAATGATAATTCAATGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP034286_3

>merge|NZ_CP034286|3|1504458-1504553|CRISPRCasFinder
AAAGGGATAAATGATAATTCAATGAACTTTAAATTAAAAATCATTGAATCAGCCTGCATCCCATACCACCAAAGGGATAAATGATATTTCAATGAA

>NZ_CP034286|3|3|1504458-1504553|CRISPRCasFinder
AAAGGGATAAATGATAATTCAATGAA	CTTTAAATTAAAAATCATTGAATCAGCCTGCATCCCATACCACC
AAAGGGATAAATGATATTTCAATGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP034286.1\|WP_031428068.1\|1511742_1512345_+\|DUF2913-family-protein	unknown	unknown	gnl\|CDD\|371392
NZ_CP034286.1\|WP_031428066.1\|1510020_1510515_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034286.1\|WP_159404360.1\|1510914_1511187_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273674
NZ_CP034286.1\|WP_108653699.1\|1496990_1497734_+\|endonuclease-I	unknown	unknown	gnl\|CDD\|185091
NZ_CP034286.1\|WP_031428057.1\|1505835_1506222_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034286.1\|WP_031428064.1\|1509256_1509472_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034286.1\|WP_108653701.1\|1493962_1494520_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034286.1\|WP_108653702.1\|1491075_1493883_+\|conjugal-transfer-protein-TraG	unknown	unknown	gnl\|CDD\|184287
NZ_CP034286.1\|WP_031428056.1\|1504922_1505366_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381603
NZ_CP034286.1\|WP_108653698.1\|1497934_1498084_+\|Hok/Gef-family-protein	unknown	unknown	gnl\|CDD\|182055
NZ_CP034286.1\|WP_031428060.1\|1506225_1506606_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034286.1\|WP_108653697.1\|1498187_1503983_+\|conjugative-transfer-relaxase/helicase-TraI	unknown	unknown	gnl\|CDD\|274285
NZ_CP034286.1\|WP_108653705.1\|1488192_1489017_+\|type-F-conjugative-transfer-system-pilin-assembly-protein-TraF	unknown	unknown	gnl\|CDD\|274274
NZ_CP034286.1\|WP_031428070.1\|1512380_1512869_-\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP034286.1\|WP_108653704.1\|1489038_1489452_+\|type-F-conjugative-transfer-system-pilin-assembly-thiol-disulfide-isomerase-TrbB	unknown	unknown	gnl\|CDD\|131785
NZ_CP034286.1\|WP_108653700.1\|1494672_1496766_+\|type-IV-conjugative-transfer-system-coupling-protein-TraD	unknown	unknown	gnl\|CDD\|131806
NZ_CP034286.1\|WP_108653703.1\|1489662_1491072_+\|conjugal-transfer-protein-TraH	unknown	unknown	gnl\|CDD\|368759
NZ_CP034286.1\|WP_031428062.1\|1507613_1507835_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP034286.1\|WP_108653694.1\|1513718_1514999_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226909
NZ_CP034286.1\|WP_108653741.1\|1504003_1504363_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP034286.1\|WP_031428068.1\|1511742_1512345_+\|DUF2913-family-protein	gnl\|CDD\|371392	pfam11140, DUF2913, Protein of unknown function (DUF2913). This family of proteins with unknown function appear to be restricted to Gammaproteobacteria.	3.22779e-20
NZ_CP034286.1\|WP_159404360.1\|1510914_1511187_-\|hypothetical-protein	gnl\|CDD\|273674	TIGR01533, Lipoprotein_E, 5'-nucleotidase, lipoprotein e(P4) family. This model represents a set of bacterial lipoproteins belonging to a larger acid phosphatase family (pfam03767), which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles. [Transport and binding proteins, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	0.00776129
NZ_CP034286.1\|WP_108653699.1\|1496990_1497734_+\|endonuclease-I	gnl\|CDD\|185091	PRK15137, PRK15137, DNA-specific endonuclease I; Provisional.	3.35769e-46
NZ_CP034286.1\|WP_108653702.1\|1491075_1493883_+\|conjugal-transfer-protein-TraG	gnl\|CDD\|184287	PRK13735, PRK13735, conjugal transfer mating pair stabilization protein TraG; Provisional.	8.21239e-77
NZ_CP034286.1\|WP_031428056.1\|1504922_1505366_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381603	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins. Lytic transglycosylase-like protein, similar to Escherichia coli invasion protein IagB. IagB is encoded within a pathogenicity island in Salmonella enterica and has been shown to degrade polymeric peptidoglycan. IagB-like invasion proteins are implicated in the invasion of eukaryotic host cells by bacteria. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Members of this family resemble the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	1.85247e-47
NZ_CP034286.1\|WP_108653698.1\|1497934_1498084_+\|Hok/Gef-family-protein	gnl\|CDD\|182055	PRK09738, PRK09738, small toxic polypeptide; Provisional.	6.52574e-07
NZ_CP034286.1\|WP_108653697.1\|1498187_1503983_+\|conjugative-transfer-relaxase/helicase-TraI	gnl\|CDD\|274285	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.	0
NZ_CP034286.1\|WP_108653705.1\|1488192_1489017_+\|type-F-conjugative-transfer-system-pilin-assembly-protein-TraF	gnl\|CDD\|274274	TIGR02739, pilus_assembly_protein_TraF, type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.	9.48109e-83
NZ_CP034286.1\|WP_108653704.1\|1489038_1489452_+\|type-F-conjugative-transfer-system-pilin-assembly-thiol-disulfide-isomerase-TrbB	gnl\|CDD\|131785	TIGR02738, hypothetical_protein, type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.	5.4363e-53
NZ_CP034286.1\|WP_108653700.1\|1494672_1496766_+\|type-IV-conjugative-transfer-system-coupling-protein-TraD	gnl\|CDD\|131806	TIGR02759, putative_conjugative_transfer_protein_TraD, type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).	0
NZ_CP034286.1\|WP_108653703.1\|1489662_1491072_+\|conjugal-transfer-protein-TraH	gnl\|CDD\|368759	pfam06122, TraH, Conjugative relaxosome accessory transposon protein. The TraH protein is thought to be a relaxosome accessory component, also necessary for transfer but not for H-pilus synthesis within the conjugative transposon.	1.16999e-118
NZ_CP034286.1\|WP_108653694.1\|1513718_1514999_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|226909	COG4533, COG4533, ABC-type uncharacterized transport system, periplasmic component [General function prediction only].	3.40092e-38
NZ_CP034286.1\|WP_031428070.1\|1512380_1512869_-\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	1.11486e-69

>NZ_CP034286.1|WP_108653741.1|1504003_1504363_-|hypothetical-protein
MSRAYPLQSSLRGQLKQDFIKFRDRENLSDAEATRQLLTLALRIKLNDSDDDRPSNRELMEEIYRVVRQSSAIGDVIHGQTFDGEKLFKDQKESQPVRRQVKADIDNQVDSFLAGKKKG
>NZ_CP034286.1|WP_108653697.1|1498187_1503983_+|conjugative-transfer-relaxase/helicase-TraI
MMSISPLRSPSNAAQYYLNEENTQDHPDTSLEKDASDNYYLKEKEQGENTFWHGKLAEEAGLLGKPVEQKTLETILSGTLNDETIKGKREDHKSGFDLTFSAPKNASILALVGGDTRLIEAHNNAVKFALSELEKDVAQATHINETGEREFHNTQSMIFAVVRHKTSRNNDPQVHSHALAANMTRDQEGNLRTLASNLKQKGGVINGSGERIYNFQKYYGALYQSQFAKESQELGFQIKGLGNAQFDIDGVPESLHKAFSTRKQQIDQQVLDFGHDSRASKDVAALDTRQRKTYHSDATLNHKWQQTVKGEGFDPALLVKQSQALPQKSDHAMQQAHDAFSHAMTHLGQYSTSLSLEKVIEVAASDFTKGAQQANAIDLKQVADEWIKNGQLVPLAEKGHYTSQAMLKNEKALMDITKGRAHNMRTNIDETTLNRLNIAQDNRQKVADIYGSTKQFHVVNVFGSSEQIAQNLLNAGNHSGKRVQLVSQTTQQLRHNQQNIPRESHTFATWVKHLFQDDQRHTLQGLLDSKHPLTNKDIILVDNVNKMSANDLLSLSEKAGNSNSKVILLNRVSNRQGMKAHSAIDLYSKGNVTTHTWVNSKQADSVVRLHHREDHNIALTYADLPDKTNAQVLATSGVEQRRLTNEIRAALKNDGQLSRTSVTVFTQQPHYLSKPQQQFAKHYQSGMTLRQWDKGKPHDFVIASVDKASNTLEVLSKTDGKASTFDPSSKAFQSMNMQLYKPDALEISQGERILATNKHFPSQLEAGHRYLVTSITKNSLTLTNQQGQSNTLPLDKLKDAPLTYDYAYSANHFEPREHTLLSGKAFTLSKELLNDLTESSARLDIFTDHPEKAQQTLAKAEVRPSAIERVLHTQSINDRYLSEATEPTLRHDIEHAIDVLAKEQHAPVSEKAVNFALNHLSEKEAGFTQKELVIEAVRYAFEETNSPITKAHIEAELAKRSDALSAEYSDGTRWTTEAAIETEKHILGNIEKGKGQHKPFSTSKQVHQYLENHPRLTHGQGNAIHLISTTPDSFVGIQGLAGTGKSTMLETNIELIEHVTQAGKNKPDQIIGLAPTHSAVSELESKGVKAQTLESLLTDIRQGRASPEDYKNTLFFLDESSMVSNKQAKELTDLVQQSQSKAVLLGDKEQLLSLNAGKPFELAMTKGIIDTAQIIDSEQMTDIIRQRNKATLGAVHNILDKQPDSALDKLSQQGADKQGKTQHVISTLTDNPQDPRKAQQIATERLPYEVAQDYLSRTQETRENTLIIAYTNNERDAITEHIRHGLIKKNELGKENVIVPRLRSIGASGEELKTMMPYQKGLVLSTKPGQYGTITKVDSEHGVVMVKSHETGKESAFLPRHRDHKFTALFSVSHKPLSTGDKIITRFTDKTRGIKANVVHHIVQADNNAVIAQSKNGQSLTIAPERFKDGHWDYAYTRTADMAQGATYQNVITSIKGKGALTNLRRAYIDLTRASEHVRLYTDNPKQMMKSWLSKEVNKASAIETVKQIAPQSTTYFNDNALPHEDVRYLNKNGDFDYDKFREHINSELPKYTESLATHLLGAPNKSKSDRDYLTFGTGKSAIKVSLTGDYRGYFKDYTTGEKGSLINLMMSHKDLSYKEAMNEAHHLLNNPEHYQVTMNKDHEKLMNTTPKHVAQFEQRAKDYLQESQELKGTLAEQYLNKLGVKDAENDNVRFHPAVYSSEDKAFHPAMIVNIHNQKGETRAIEITYLDHDANKDSDMDVNPRVLGTKSKQMTHFNQGQDLNTTIISTGIEQSFIINEHTHGQYDIINVNHKNDIQNITPDEIRQNVIIVLTNQNLDINSNNMEKIIEKFSSPNIHFVTEEDILKQITECVQKFEGQDKDINLNIAIDDSVFKQPNSDHKDVISSIYNERESKELEHFDHKEHSPQQDLDLNRDPNVDKYLDLDRELER
>NZ_CP034286.1|WP_108653698.1|1497934_1498084_+|Hok/Gef-family-protein
MPKKTALAALVVVCITAVILTALYKGSLCDVRYKDKENDLSITLAYEVR
>NZ_CP034286.1|WP_108653699.1|1496990_1497734_+|endonuclease-I
MTKKHIYGMGLLALFSGACVAEPLGNTTITSFNTAKKIMQQHVYTTPELRKTLYCGATFNVKKEVTPPSGFKTNKYKNRLNRWEAEHIVPAENFGRTFIEWREGHPQCIDNKGKAFKGRKCAEKVNTEYRLMQSDLYNLYPAIGSVNAARQNYNFTLLPHATSNFGQCDVRIDGRKVQPPEQARGAIARTYLYFEAVYPRYSMSKAQRQLMQAWDKQYPVTKVECQRAQQIKQQQGNTNPILAKRCY
>NZ_CP034286.1|WP_108653700.1|1494672_1496766_+|type-IV-conjugative-transfer-system-coupling-protein-TraD
MHTPTRKKSNHFTRGGQVTFHAITMFFQVNNKLVKFIGWGVVALTLLLTYLNSPPNAFWGEFYYLRNVLYAKLGKPLDSPVTTIWEGERYTDTLASQLQNSVLLDIHATIWHNVQIYFLIALVIGMAIFMIALRFFKEQGEKQSEDFHIRGFRLAPPEAITKELKARAKAKKKRGYGDGSISSFEIDGHALLKQYFEVQHLLIDGTTGAGKSIMIRKLVRWIRAQGDKAIIYDKGCTFTGKFYNPATDVLLNPFDKRCANWDVWSDAIEAPDFENMAAALIPQHGEGDPFWVDSARTIFSSTAYRMSQDDKPCTTERLLSLILTSELETLGNFLEGTESASLVSKDIKKTAISIKSVLATYIKSLRFLDGLNNEARPDKLRQKFSITNWVQDDNQKGFLFLSSNAQQHASLRPLISMWLAIASNAILGLKEDEDRRIWVIMDEMPSLHKLPELGSIIAEVRKFGGCYLIGIQSYAQLVKTYGKNAAEEMFDLLNTRFFFRAPSEPMARISAKDLGEQEVDVSKENVSYGANTLRDGVSLGHQTITRPVVSASEIQALDDLQCYLRSPGIDLITRLDLEFDKMRDVCSSFDKRTIVLSSAMNKVYEQAIYHECVAPGLYLNEEDRRKLTDAQEANFENEAQMKVETDQIQQAIKSETVSELVNQDPKLAQEQAYQEEAQRNIDEAAITQEAEIGEVYD
>NZ_CP034286.1|WP_108653701.1|1493962_1494520_+|hypothetical-protein
MNKILTVILSLLFIAPTWAQDNTWRKSPELNALIAELKQHYASNDLSDFRHEQMTQVDNLSFFIQYIDKPDTPEYKLLKAYLWGVQQSYINGVNRQIKTNVVPWFCPKGGLKNVSHNAENPTQFIENIIWWSLERDIQLNPKRYQQYEGAAAFGYLSGIIVYGLQTKYPCYDQVPQAHQMKGWVY
>NZ_CP034286.1|WP_108653702.1|1491075_1493883_+|conjugal-transfer-protein-TraG
MTLEYYVYTQGATLQRALNAIAAFFQSASFASMTSIALMIGAIMTMVLFFATRNTKHIYIWAIVFTLVPSMLLQQTARVQIIDKTEPSGVYSVDNVPYLVAVPTWFFSTMMMGVTEAVETIFMTTDDKRYGRTGMMFGSELYQLSRQADLRDIEVRRTWNDFFKNCIIGDIEINRKYTWKALLSAPDIWGFLDGQSMSPLRGVMINGMSQDFKTCREIYPDLKSQFGVASADELDLIGTYLHGAKAATYAPHVRNALQNSYQDFIGISNNAVDVLKQNMTINAMRRSIHALNPNASAMNYAYTSNKMQQTSMWATLGMQAREFIPMMHTMLFFLFSCLSFMIAAAALIPALTKMVLVNYVKTFAYLATWPPLFAILNVLMVWPLEMTSSATADPMNGLSLSNANALDELHTRFGYMAGFLMMTIPVLAGKVLQGGVAAAQAMNYQLAGMINSTNARVSAASSTGNMDFGNLQMQNHSFNNTSANKFDDNVLLRTGMATIQQQDGASITTLQNDSGRRLYNAQEAESKPIWQAQASTMLQNSVSDQYSSALTAQKQSMNTFTDNYSNSMQQSDRWNDNWSRSLSYGDGHSTSTEGQISQSYSKMESAIDNISQTMGWTHDQARAYATAASTGIEVSTPGSWMGFGAKAGVNWSTDQREAYSNMNAEQKQALEQATQQYSEGATSMERAGRTIDTKENRSAVEQYAHDFALNHQRLQSSAASVSESNAEVASLQNIQSRLDTDSVNFSASAVTGFQNYLEKALQYEDNDVARLMNATKPEDLMEVRNQFNEYTRSDAFQNAFGVSTSKSDIDDLGKLYQPNNLSETPTLSPEQQHGVNIGATNAKNKIDEVTIDMINYNGSDGLYNHDVYRNVKGNTLVAGGHMQNEADQPVTPTTDSNSDVAKTVQDHLVTPPQMDTNRPSHTGYQLYDSNSKNRE
>NZ_CP034286.1|WP_108653703.1|1489662_1491072_+|conjugal-transfer-protein-TraH
MHAWLSTFSVEKTRWPLTCLTLSLVLTHPAHATGVSGSLDSFFNDLGYHTNVSSPNAYKGQAANYYNGGSLYVRSPIKNAQLVSATVPSVSMGCGGIDAFMGGFSHINSDQLVQFGQAVVSNAVPFAVDLALQTWAPQIKQIRDNLQNIADKWLNQSINSCETAQAAVSGLAGAFDNPQTKKHICATMGTHNNAFSDWVAAQQECGVGGQANAQLANARNNPALEDLTQTNHNIVWSATLKNSFLSSDTALAEFLMSLSGTYIYDASGQPRYYASLLADNNNLVQALLEGGEVSYYRCDNTDRKHCLNPSQATLTLASSKGLQERIRTLLEQLYTAIANDSALTSIQKSFLEYTETPIQAIFISATRANRYPNFAAYSRLISIELLNRYLANMLNVVQTSLANTQVNHKDIALITRDIDRAKRFTDGLADKATKQLLEQEQLIQAHKSNDQKAWQKLSEQLQQNLTFGE
>NZ_CP034286.1|WP_108653704.1|1489038_1489452_+|type-F-conjugative-transfer-system-pilin-assembly-thiol-disulfide-isomerase-TrbB
MLKRALFFLLFITTASPTYAVMLDQYAMVFFYRSDCPYCHKFAPKFKTFTQQAQLQTYVFSLDNRPITEYPVPIPATPEISQLFFESPRNITVPATFLINVNSRKFVKVSIGDVTYDELEQSVKGILSDRALLEAMQ
>NZ_CP034286.1|WP_108653705.1|1488192_1489017_+|type-F-conjugative-transfer-system-pilin-assembly-protein-TraF
MDNNPYLKETIMKSLHKTKSVGSLVLFTWALTYAHLTFASPTTPKGWKWYNELKAYPTAPKPVPTSLPSNTKTTVMSATQQMQWFHQTYEEVKADATINPDDEQKYLKLMQLNHFIGEKTAQTGMTFKKLLLKYPEYSYVKDRPVEQAARSTYHQQERQKKIDMVDKMKNEGWGFFFVYEGDDPLTQSLAPSMQQFADTYNLELLGVSNDGVFIDNIRQNRLNNDKVVVPFTPALILVNPTTSEFKPLAYGFISQNDLLGRFYNVATNYQSPDF
>NZ_CP034286.1|WP_031428056.1|1504922_1505366_-|lytic-transglycosylase-domain-containing-protein
MKKSCLLLLIFPSAVSAFCFEEAAAHYNVSPKLLRAIAQVESSFNPKAYNENKDEDGNITSRDFGLMQINSSWFPRLAEFNVNESNVYEPCFNVSLGAWVLASNFASHGYNWNSVGAYNAGFAKRTENARKIYIQKVQSVYYSADLK
>NZ_CP034286.1|WP_031428057.1|1505835_1506222_-|hypothetical-protein
MKYLSDYIQQPQTALFDELGAFFAFSNKQFDEVKKKGIEYVSLGMGMIVPKNNAKQLVERLEVIQKEGINQDIAENGKDSIIRRELFNHECFYTGDICDCVEKLEGYGYSYDDIYQVYSHICKTENVY
>NZ_CP034286.1|WP_031428060.1|1506225_1506606_-|hypothetical-protein
MAQRHLTPTLPKSNSATNVSTLDLESPPKNDVSGYLLQQLPAYLDPSKVVSVVVRGEHFGSWDTPRDQWEAGFQVMAIESNGNEKHVTNFLPSQLSISAIKQECGEIAKALTATLIDTTINFNVKA
>NZ_CP034286.1|WP_031428062.1|1507613_1507835_-|hypothetical-protein
MSENEHSTLDREKAEINKIEAEAQFKREEAKALKDDARMRKLGFCFRWLIIWLSIGGFIKLEIIQEVAKWING
>NZ_CP034286.1|WP_031428064.1|1509256_1509472_-|hypothetical-protein
MAKHNAASQYFHVAIGSSISPRELHDAGFEMQDFKFLHTNFEDVKARLRDFFVVDESNHFQIIYRFERLPF
>NZ_CP034286.1|WP_031428066.1|1510020_1510515_-|hypothetical-protein
MKKQFVAVTLLSILGSPTTSADTLPEQYAYQVALFNGDDLLYKHSSFTVDGNRFSNGTHIPYFIKTCEKKGTKTINKSAGKQFYQGVGYQIDVHAATVTFVETVIDESTYIEPQKDEFNLCMNTGEPQEKEYKYNAIFDLKVQGVQQFTFDNNRRVEIIVQKEG
>NZ_CP034286.1|WP_159404360.1|1510914_1511187_-|hypothetical-protein
MTDLDDTLVLPLEYWGYLIKNNKDFFEDPIWDEWKKIKSYTVASTFFFLILLMVIGSQLFLVIQSHLRVKKTQSFLTLNGQSLWLKSSSE
>NZ_CP034286.1|WP_031428068.1|1511742_1512345_+|DUF2913-family-protein
MSDLKDLHYYRTFHTLVLHALLHLLSTVSMSNRYVPASKRNDILIKYLKPKLKDKAFSHLKKDIRLMLNIAKSKQGNLEKRLYELHALADECKPTDLSKLMELLVYLNDEVNIDSKVYEEGQETLPNVLYMLESHIDHCFDDNEMQVAPVSMFIQNPTPSELIQTINEFNKLTCEMKQWDKNTNHVHLLLHPIGVKTNLA
>NZ_CP034286.1|WP_031428070.1|1512380_1512869_-|DNA-repair-protein-RadC
MTASNLTYLNNALFSAEEKQTLGHAAQILKSKLFINELPALTSPDLVKAYCQTSLAAKEHEVFGVLFLDNQHRVRATDEMFNGTIDSASVYPREVVKEALMHNAAAVIFYHNHPSGVAEPSQNDRRITRRLADALALVDVRVLDHFVISHEEVVSFAERGWI
>NZ_CP034286.1|WP_108653694.1|1513718_1514999_+|ABC-transporter-substrate-binding-protein
MLEKSSSPFINQIHLQRLKQLCMRYPVSEQCATDIQTLAEQLSCSDRNVTKLIKTLTSLGWLSWEPGLGRGHKSKLTINVSFETALTRELENYCFKGQLSEAARYAEQFGYYDVFRNNLPKWLHRAQEALKVQNHLAMLAPYCLPELHPLKAIRPISRPYIDGIFDTLLSYDKASDSVKPNLAHYFEFRGAELWLRLRDDVYFHNGEHLSPNHVVQCLEALVSYPHSKQLLYRHIRSVYADGRWIVLHMEFADPMILRVLADTHAAIYLESRDSQIPIGTGVFQLEVDPSISGSEANTSHTHWSLIKNPHYFAVNALIDKIECWTIDSTSTDIHAHITHHGYSTTIPSASVNKTLSMGCEVMEFIYKEDMLSMDEKAWLIHHAREFCNNSSNNHAPVANCVSGLHQERMVHLYHPTMTRPERDIKV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP034285

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP034286

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection