CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP041977	Bacillus pacificus strain NCCP 15909 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0	0
NZ_CP041978	Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence	1 crisprs	RT,csa3,c2c10_CAS-V-U3,cas14j	0	6	1
NZ_CP041979	Bacillus pacificus strain NCCP 15909 chromosome, complete genome	5 crisprs	cas14j,cas3,csa3,WYL,Cas14u_CAS-V,c2c9_V-U4,DEDDh,cas14k,DinG	9	5	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041978_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041978_1

177133-177362

TypeI-A

NA:V-U3

Consensus_repeat	Method
CGCATTTCAATACATCTATTATTATGTTTT	CRISPRCasFinder
ATTTCAATACATCTATTATTATGTTTTACCT	CRT

3 spacers

csa3,c2c10_CAS-V-U3

The CRISPR arrays of NZ_CP041978_1

>merge|NZ_CP041978|1|177133-177362|CRISPRCasFinder,CRT
TCTTTTTAAATACATCTATTAGTTTGTTAAACCCTAAATAGAGGGTCCTAACCGACTTATTAATAAGTATTTCAATACATCTATTATTATGTTTTACCTACCAGGTTCCTCCTTTTATATAAAAAGAGGACGCATTTCAATACATCTATTATTATGTTTTTCCTAAGATTCCTACTCATATGGTTACTTGGCTGTCCGCATTTCAATACATCTATTGTTATGTTTTATCT

>NZ_CP041978|1|1|177133-177358|CRISPRCasFinder
TCTTTTTAAATACATCTATTAGTTTGTTAA	ACCCTAAATAGAGGGTCCTAACCGACTTATTAATA
AGTATTTCAATACATCTATTATTATGTTTT	ACCTACCAGGTTCCTCCTTTTATATAAAAAGAGGA
CGCATTTCAATACATCTATTATTATGTTTT	TCCTAAGATTCCTACTCATATGGTTACTTGGCTGTC
CGCATTTCAATACATCTATTGTTATGTTTT

>NZ_CP041978|1|1|177136-177362|CRT
TTTTAAATACATCTATTAGTTTGTTAAACCC	TAAATAGAGGGTCCTAACCGACTTATTAATAAGT
ATTTCAATACATCTATTATTATGTTTTACCT	ACCAGGTTCCTCCTTTTATATAAAAAGAGGACGC
ATTTCAATACATCTATTATTATGTTTTTCCT	AAGATTCCTACTCATATGGTTACTTGGCTGTCCGC
ATTTCAATACATCTATTGTTATGTTTTATCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041978.1\|WP_046648683.1\|181004_181463_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041978.1\|WP_046648647.1\|184455_185280_-\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318
NZ_CP041978.1\|WP_000866032.1\|189265_189904_-\|NERD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377990
NZ_CP041978.1\|WP_000207870.1\|171374_171668_-\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP041978.1\|WP_086706967.1\|169644_169776_+\|Phr-family-secreted-Rap-phosphatase-inhibitor	unknown	unknown	unknown
NZ_CP041978.1\|WP_167309143.1\|170240_170618_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041978.1\|WP_046648641.1\|188151_188817_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP041978.1\|WP_000078380.1\|172259_172547_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041978.1\|WP_080344570.1\|177621_178983_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	c2c10_CAS-V-U3	-	gnl\|CDD\|284650
NZ_CP041978.1\|WP_046648658.1\|170882_171068_+\|RNA-chaperone-Hfq	unknown	unknown	gnl\|CDD\|274101
NZ_CP041978.1\|WP_046648648.1\|181795_182824_-\|BtrH-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379786
NZ_CP041978.1\|WP_000708129.1\|172857_173502_-\|thermonuclease-family-protein	unknown	unknown	gnl\|CDD\|214615
NZ_CP041978.1\|WP_046648649.1\|179291_179720_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041978.1\|WP_046648662.1\|168553_169648_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|376220
NZ_CP041978.1\|WP_046648657.1\|171754_172183_-\|disulfide-bond-formation-protein-B	unknown	unknown	gnl\|CDD\|179540
NZ_CP041978.1\|WP_046648653.1\|173930_176594_-\|type-IA-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236078
NZ_CP041978.1\|WP_071713415.1\|179907_180117_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041978.1\|WP_044797021.1\|172623_172824_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041978.1\|WP_046648645.1\|185309_186599_-\|YcaO-like-family-protein	unknown	unknown	gnl\|CDD\|274674
NZ_CP041978.1\|WP_046648680.1\|182801_184466_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055

Protein	Function_ID	Function_description	E-value
NZ_CP041978.1\|WP_046648647.1\|184455_185280_-\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	1.73375e-35
NZ_CP041978.1\|WP_000207870.1\|171374_171668_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.03407e-11
NZ_CP041978.1\|WP_046648680.1\|182801_184466_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.2114e-54
NZ_CP041978.1\|WP_046648658.1\|170882_171068_+\|RNA-chaperone-Hfq	gnl\|CDD\|274101	TIGR02383, RNA-binding_protein_Hfq, RNA chaperone Hfq. This model represents the RNA-binding pleiotropic regulator Hfq, a small, Sm-like protein of bacteria. It helps pair regulatory noncoding RNAs with complementary mRNA target regions. It enhances the elongation of poly(A) tails on mRNA. It appears also to protect RNase E recognition sites (A/U-rich sequences with adjacent stem-loop structures) from cleavage. Being pleiotropic, it differs in some of its activities in different species. Hfq binds the non-coding regulatory RNA DsrA (see Rfam RF00014) in the few species known to have it: Escherichia coli, Shigella flexneri, Salmonella spp. In Azorhizobium caulinodans, an hfq mutant is unable to express nifA, and Hfq is called NrfA, for nif regulatory factor (see . The name hfq reflects phenomenology as a host factor for phage Q-beta RNA replication. [Regulatory functions, Other].	1.63184e-21
NZ_CP041978.1\|WP_046648641.1\|188151_188817_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	6.13312e-13
NZ_CP041978.1\|WP_000708129.1\|172857_173502_-\|thermonuclease-family-protein	gnl\|CDD\|214615	smart00318, SNc, Staphylococcal nuclease homologues.	4.94701e-32
NZ_CP041978.1\|WP_046648648.1\|181795_182824_-\|BtrH-N-terminal-domain-containing-protein	gnl\|CDD\|379786	pfam16169, DUF4872, Domain of unknown function (DUF4872). Members of this family are often found in the gene neighborhood, or fused to, non-ribosomal peptide synthetases.	5.8436e-18
NZ_CP041978.1\|WP_046648662.1\|168553_169648_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|376220	pfam18801, RapH_N, response regulator aspartate phosphatase H, N terminal. Rap proteins consist of a N-terminal 3-helix bundle and a tetratricopeptide domain. This entry represents the conserved region of the C-terminal bundle.	1.54633e-20
NZ_CP041978.1\|WP_046648657.1\|171754_172183_-\|disulfide-bond-formation-protein-B	gnl\|CDD\|179540	PRK03113, PRK03113, putative disulfide oxidoreductase; Provisional.	1.70192e-37
NZ_CP041978.1\|WP_046648653.1\|173930_176594_-\|type-IA-DNA-topoisomerase	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	1.1167e-134
NZ_CP041978.1\|WP_000866032.1\|189265_189904_-\|NERD-domain-containing-protein	gnl\|CDD\|377990	pfam08378, NERD, Nuclease-related domain. The nuclease-related domain (NERD) is found in a range of bacterial as well as archaeal and plant proteins. It has distant similarity to endonucleases (hence its name) and its predicted secondary structure is helix - sheet - sheet - sheet - sheet - weak sheet/long loop - helix - sheet - sheet. The majority of NERD-containing proteins are single-domain, but in several cases proteins containing NERD have additional domains which in 75% of cases are involved in DNA processing.	1.80407e-26
NZ_CP041978.1\|WP_080344570.1\|177621_178983_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|284650	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain. This putative domain is found at the C-terminus of a large number of transposase proteins. This domain contains four conserved cysteines suggestive of a zinc binding domain. Given the need for transposases to bind DNA as well as the large number of DNA-binding zinc fingers we hypothesize this domain is DNA-binding.	1.08208e-20
NZ_CP041978.1\|WP_046648645.1\|185309_186599_-\|YcaO-like-family-protein	gnl\|CDD\|274674	TIGR03604, hypothetical_protein, thiazole/oxazole-forming peptide maturase, SagD family component. Members of this protein family include enzymes related to SagD, previously referred to as a scaffold or docking protein involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). Newer evidence describes an enzymatic activity, an ATP-dependent cyclodehydration reaction, previously ascribed to the SagC component. This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins.	2.43935e-121

>NZ_CP041978.1|WP_046648653.1|173930_176594_-|type-IA-DNA-topoisomerase
MGKTLFIAEKPKVANEIMKSPRFRHSQKYIGSKPYYGYYENEHYIVSWCRGHLLELKNPEEMDPKYKVFSLEHLPLIYEPAYKVKQENAEQLQILVKLLQRPDVDHAVNICDADREGELIYREVYEFAGVNKKQSRVYKSSFEAAELETALNRLESASKYDGLAYSAKARQYLDYLLGMNITRGCTTKLAQNKFLLSSGRVQMCLLNEIRQRELAIENYKEQSYYHLQLITDLGLKPVMKTEDQVLNPSPLRSLGEDLKGQYLVVEEFKEGTRKKNPKLLYNLTDLYKDAHAQLQINAETSRKHIQTLYEEGFITYPRSSSRHLPTEQVDRVKGVMQALAKSQYSLLVQSVDIEAIDVKHKTFNDELVSSHFAIIPTTKQYQEEGRPEIEKQLYSLVVKRFVGNFMRPAVYLVREVSLIDAMGNNYQTKESVLREKGFLEVFQEEIEEESVEVFKIPIMQKGQELQICDFELQESKTKKPALHTESSILTFMETAGRKIDDEHLKELMKGKRIGTVATEATFIPALHEKNYIAIEKGKITTTPIGRAFIEQFPVQQIKDPLYTAEMEGMIHRIEKNEMSYEDFIAQTNTFVQKITQEIIRIPDTVSHNLIETWKQQIEVCQCPCGNGIILDRGKFFGCSNHPNCNIGLPKRIKEKTIPAAQIKKLFEENKTDIIKGFKSNGKEFSAYLAFVNGEVSFNLPSVEELSLGQCPKCQKGQILNRKTFFGCSEYQNGCDFMLPAKIKGKKLSDSQIKKLVNNNVTDFISGFSGGKGEFTAAIRLNPDLSICFEFPTTDDRTVGKCPLCQSRVIIGKTNYLCEQYKKGCDFIVSGMILEKRITASQIKKLLEKNMTDTIKGFISKKTGKSFDAKLTYDSSQKRVSFIYEKKK
>NZ_CP041978.1|WP_000708129.1|172857_173502_-|thermonuclease-family-protein
MKIWIKAICITSFVFQMAACSNSTQTKNDSRPAQAVQNGIQQHVEGKGIVDIPEAYKGKIKGLETVKGKILHIKDGDTIDVNVKGQKQTVRLLLLDTPESVSQKIPPQKMGKEASSFLKKQLEGKSVTLVYDRGQKEDKYGRKLAYVFCNGIHINELMVKSGYGIIAYISRPNTTFLPEMLEAEKKAKELKAGVWSIKGFVDEKNRHYNRNDAA
>NZ_CP041978.1|WP_044797021.1|172623_172824_-|hypothetical-protein
MNGNKRNMLLSFFISTFFIFLSLFSFSGNEYVYVISKIGAAAGVINIVIMSVFLYFQSKKMRHLLN
>NZ_CP041978.1|WP_000078380.1|172259_172547_-|hypothetical-protein
MSQIPGFLKFVLAKERRYVYLAVAEKKNKRVKTHIVYRFGPLETALETMYGMRDDFENCFPPELKDKGYDWEDLNDWILSIETGYSKYGNKLVTF
>NZ_CP041978.1|WP_046648657.1|171754_172183_-|disulfide-bond-formation-protein-B
MEWIRKYHIAIAWTIATSAMLISLFFSEWMKLPPCDLCWYQRMAMYPLVLILGIGMYRKDPHVSTYAFPFACIGLMLSVYQITIQAFPISEMKTCSVGVSCTEDYLNLFGFISIPMLSFIGFLAIIILLYIKSDTETKEQTI
>NZ_CP041978.1|WP_000207870.1|171374_171668_-|winged-helix-turn-helix-transcriptional-regulator
MTTIQASNEMYKIPEADVELLKIMAHPVRLQIVKELEHRKICNVTQLTELLDVPQSTVSQHLSKMRGKILRSERRGLEMYYHIANSKACQIVSVLGL
>NZ_CP041978.1|WP_046648658.1|170882_171068_+|RNA-chaperone-Hfq
MHTQEDFYKKLIEEQRVVTIFLINGVRVPGVIIAVDKFSVLVSSNGKQQFLYKQAISTVSL
>NZ_CP041978.1|WP_167309143.1|170240_170618_+|hypothetical-protein
MKKIQELDNISKEIGDHLLGKIERTSNGILISESKVHDLSYLERELERLIEDNYFMDNDCDCFGMIEQGYMHALYNHFPLDLIEAITTEQTRRHTRKRHPKKSWEKLRSYGLETVDKRKNTNIAF
>NZ_CP041978.1|WP_086706967.1|169644_169776_+|Phr-family-secreted-Rap-phosphatase-inhibitor
MKKTMLGLVGVITIFTLMFGAQSPTETQKAIDVIQYAHGNHGG
>NZ_CP041978.1|WP_046648662.1|168553_169648_+|tetratricopeptide-repeat-protein
MIVSTKGNNEITKLLNDWYLEIRSRRIGNAHQLKEIIDTKIHSIEEDQNLLLYYSLLDFRYQFVIDNLSVSKSSFDKVEAFDMPTDNFLAYYYHFFKGIHASTIGEYQIAKESYENAEKLLDCIPDELEKAEFYYKVGAFHYDMYQGLLSYKKVSEAREIFAQHAGYEINVAFCDNLIGLACTHLREWELAEEYFTKAMDMFQKIDEEQFILMVRQNLGLMYATQNLSSLAIRYLSEVNQKMPNNYKALFIEAREHMKEGNHSVAKDLIVTGHSICEEVANIEYLHHFKILDAMNGDFPAETLEKTVLEGVSYFKEQELFEYIKEYEEYLATAFYKENNHVKASHYFYSCSQAGKKAFEKEALK
>NZ_CP041978.1|WP_080344570.1|177621_178983_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MTYLSIAVKVMKYQIVCPVNIEWKTFEIYLRTLSYHFRTIGNRTIQKLWEYDNQSLKHFKDTGQYPSAQQLYGCTQKTISGYIYDQLKEEYQDINKANMSTTLQKTIKTWNSRKKEIWSGEMSIPSFRNNLPIDIHGNSIQIIKEKSGDYIASVSLFSSKFIKENDLPNGKILVKLSTRKQNSMKVILDRIIDSTYAKGACMLHKHKKKWYLSITYKSNIKEELKFDEDLIMGIDMGKINVLYFAFNKGLVRGAISGEEIEAFRKKIEHRRISLLRQGKYCSGNRIGKGRKKRIKPIEVLNDKIAKFRNATNHKYANYIVQQCLKYNCGTIQLEDLQGISKEQTFLKNWTYFDLQEKIKNLANQYGIKVVKIDPSYTSQRCSECGYIHKNNRQNQSTFECQQCSFKVHADYNAAKNISVYNIEKVIQKQLKLQEKLNLTKYKEQYIEQMENIN
>NZ_CP041978.1|WP_046648649.1|179291_179720_+|hypothetical-protein
MLKKLSVFLIGTLLLFGLAACDSIKSVASDVTVGKVIEEFKTAGLEAEQPSDLPEKEFGNTRKDAKRILVPALGEDSGGRIFEFKNKQDLEQAKKYYDDLGNGNQMLFSHTYAKGNFLLQMNGDMEDAQFNKYKEVMDKIIK
>NZ_CP041978.1|WP_071713415.1|179907_180117_+|hypothetical-protein
MYIIINFEPLSPVMNDIAIKLAMVLFIPLFLALIVKVILMKFMKESIAGRIASLSLLFFMYYVFIFVAG
>NZ_CP041978.1|WP_046648683.1|181004_181463_-|hypothetical-protein
MFIFAVFKILVSFILLGLILLLSILWVKIEKILNDTLFKTLPKKVKNIIIILFVILIELTIIFIVSLNWSVPFIDALFIGSLVLLCYIWLVPYFVNYQENIAKVTDKYFNAGVEIGEIKTFQMKISTFSLGSILFAVVGIIVTICCYYKYFL
>NZ_CP041978.1|WP_046648648.1|181795_182824_-|BtrH-N-terminal-domain-containing-protein
MNTHIISDFPSLVGKHCSSTAIQEIMMYYKQPLSEAMIFGIGSGLFFSYFSFANNYPRLLITRTPYFENNFFNAINHNFKWYSGEVLNVDKIISFLENDIPILVISETGYLDFYGTKGGRNVAGHTFTILGFDIRKKTFLVSDFISSEYFSLSLIDLKKAINQAKVPYDRKNVWAPVYPFVIEDIREAMLKGMWKNANDMLQNQNDNYGILNIKKLSAEIPYWTELPEWEECCLHTYMMIEKIGSGGSGFRKLYTEFLIEASSYFKEIEQYSCINKMQKINKLYKLLGRKFFVTGRTKERKNLIEIQKCLEDIYLLEKEFWETISYIVNKTTSSKLILNSSN
>NZ_CP041978.1|WP_046648680.1|182801_184466_-|ABC-transporter-ATP-binding-protein
MKNKVLWKFLVNLYKKQKYKLIILFLFSCFLALNEIAFPLILKYIIDNVTISNLYGFAIKYGWIFISIIIVQLIIKYYAVILDNQVVIDSNLVLRKKINETLKRSDYFRFINLENKNLTQIITYDVPQCQGILNSIIFDLIVQCLVFISTFLILMALNLKLTLIILMILPIYYGVFYLFNSKLNIINMQLIEHRDYLSNVIEKIQLNFKNYKIYVRKNGFDQQYNDRVVKISQTQSKNAKLVAVMNITMTILFCLLIGLIAIIGFSEVKNNTLSIGALSAFLVYTMNFFSPIQRIMSLFIDFKISVISIKRVHELLCLDLEEKNHVKLEKNMQGNVLFKNAQVKLGNKNIVSNFTGEIVRGKINYLVGRNASGKSTLILSLIQFIKSSGIYIDSYEVTRYDIEMLRKNISVAFQEPEFIAENVTDQLNLIEENNYNKLINPEKKIIIDKYVKVLVSLLEPSKTISELSGGKKQLLSIISVLKSYPEILILDEAFSNLDSEIRYEIKNVMNSLKEHITIIVVDHFANPALEDNVISLEQEKFVREGSISEHTHNF
>NZ_CP041978.1|WP_046648647.1|184455_185280_-|SagB/ThcOx-family-dehydrogenase
MNKFEDHTKQYILSRMYDCNTRATPMSSFGISKHKVYDYSTKIKKQHYCIKSIPLCIDKTMIKQEFYQVLNSRQSVAELEIRTRIGFKTLSNLLHFSYGYVNQQHNATPSAGGKYPISIYIAIFNVENLEQGIYYYNKEESTLEMIRKGNFREVINNLYVDNTHIHSASFIMFHVANLDQTSSKYEDRGYKLIHLDMGHLSQNLYLLSSAQHLGIRAIFGIYENKVNDFLEIDGENEFVLLSHVFGGIKYPTPIIMGTKYSDLYYENEETGSEE
>NZ_CP041978.1|WP_046648645.1|185309_186599_-|YcaO-like-family-protein
MGMQNALEYIINKNTGIIHHVKNKMDFKLPFPMHIYFAFRNELVDVSEGVKIRGDYSGLGYSYDCPESALISAVGEALERYCSCYLNSEVLIKDSFNSLVKKNVHALNPLSITQPLNEQYQETYHTCKEIDGETIFYWVEAMDEIHNKKILVPANTMYFDVDKEFLLPHIRDSISTGLATGSTRLQAIENAALECIERDAIMITWLNQLTVPLIDSKTIPDETVQYYLNVANEKGFEVFFFEITTDIKVPTYFVLIRNLYNNYPYIQVGAKAHYEPIIALKGALMETLASLNLLADPNLEMAEFSDIKNVKNIRSIKDHMLYYAAGNDKEAFDFLISNSEKPFNNYSKVNNFEELKENLDKMELNLYSYDLTTEDINSLGLYVYRVLMPELAFLEITLPMLGCNRLIDAPNNMGYVPAKTFNKNPHPFP
>NZ_CP041978.1|WP_046648641.1|188151_188817_+|CPBP-family-intramembrane-metalloprotease
MTSKKKITWLQVFFILITSSIIVITTTLVRNLGNENIITWFNFEISLYSIIVTFLFLYSASYHYLKGEWNLFALLKWKNYILFFTAIILQFIISAWLLNIPLLSTWKLLTSPTAYYFEATWAQKTLFIIGMTLLTAIAEEAIFRGIIFNKLLEKFNLFISMCLSAALFSILHLPITFTDAFIAFLLGILATSLYRFTRSLSIPIIFHSIWNLFIIFYSNYL
>NZ_CP041978.1|WP_000866032.1|189265_189904_-|NERD-domain-containing-protein
MKVLIFELVLIAILIPLNIVVKKHVPKWKGKAGEKLVKRILSKLDPKSYYVLHDVTVHTEYGDTTQIDHIVIAETGVFVIETKNYEGWIYGNEKSARWTQGIFRKKSSFQNPFRQNYKHIKAIEWLIEQQLPCISIVAFHPKCSLKRVNVQSKDKHVLYYNDLQKCIESYTETQLTNDEVQHIYQTILRADIMDKDIEKKHVKYLHNKFAKQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041978_1	1.1\|177163\|35\|NZ_CP041978\|CRISPRCasFinder	177163-177197	35	NZ_CP041978	Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence	177163-177197	0	1.0
NZ_CP041978_1	1.1\|177163\|35\|NZ_CP041978\|CRISPRCasFinder	177163-177197	35	CP041980	Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence	160114-160148	0	1.0
NZ_CP041978_1	1.1\|177163\|35\|NZ_CP041978\|CRISPRCasFinder	177163-177197	35	NZ_CP040343	Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence	283299-283333	0	1.0
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NZ_CP040343	Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence	283234-283268	0	1.0
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NZ_CP041978	Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence	177228-177262	0	1.0
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	CP041980	Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence	160179-160213	0	1.0
NZ_CP041978_1	1.3\|177293\|36\|NZ_CP041978\|CRISPRCasFinder	177293-177328	36	NZ_CP040343	Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence	283168-283203	0	1.0
NZ_CP041978_1	1.3\|177293\|36\|NZ_CP041978\|CRISPRCasFinder	177293-177328	36	NZ_CP041978	Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence	177293-177328	0	1.0
NZ_CP041978_1	1.3\|177293\|36\|NZ_CP041978\|CRISPRCasFinder	177293-177328	36	CP041980	Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence	160244-160279	0	1.0
NZ_CP041978_1	1.4\|177167\|34\|NZ_CP041978\|CRT	177167-177200	34	NZ_CP040343	Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence	283296-283329	0	1.0
NZ_CP041978_1	1.4\|177167\|34\|NZ_CP041978\|CRT	177167-177200	34	NZ_CP041978	Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence	177167-177200	0	1.0
NZ_CP041978_1	1.4\|177167\|34\|NZ_CP041978\|CRT	177167-177200	34	CP041980	Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence	160118-160151	0	1.0
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NZ_CP032610	Bacillus thuringiensis strain QZL38 plasmid p.3, complete sequence	25954-25987	0	1.0
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	CP024687	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-3-257K, complete sequence	223792-223825	0	1.0
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NC_018694	Bacillus thuringiensis MC28 plasmid pMC54, complete sequence	46415-46448	0	1.0
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NZ_CP040343	Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence	283231-283264	0	1.0
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NC_018487	Bacillus thuringiensis HD-771 plasmid p03, complete sequence	55684-55717	0	1.0
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NZ_CP014286	Bacillus thuringiensis strain Bt185 plasmid pBT1850054, complete sequence	42100-42133	0	1.0
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NZ_CP041978	Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence	177232-177265	0	1.0
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	CP041980	Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence	160183-160216	0	1.0
NZ_CP041978_1	1.6\|177297\|35\|NZ_CP041978\|CRT	177297-177331	35	NZ_CP041978	Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence	177297-177331	0	1.0
NZ_CP041978_1	1.6\|177297\|35\|NZ_CP041978\|CRT	177297-177331	35	CP041980	Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence	160248-160282	0	1.0
NZ_CP041978_1	1.6\|177297\|35\|NZ_CP041978\|CRT	177297-177331	35	NZ_CP040343	Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence	283165-283199	0	1.0
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NZ_CP004871	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB46, complete sequence	34303-34336	1	0.971
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NZ_CP011352	Bacillus thuringiensis strain YC-10 plasmid pYC4, complete sequence	44963-44996	1	0.971
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NZ_CP013060	Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-5, complete sequence	17547-17580	1	0.971
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NZ_CP010095	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB47, complete sequence	34647-34680	1	0.971
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	MK843319	Bacillus phage vB_BthS-TP21T, complete genome	44065-44098	1	0.971
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	KT970646	Bacillus phage phiS58, complete genome	42359-42392	1	0.971
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	HE614281	Staphylococcus phage SpaA1 complete genome	39195-39228	1	0.971
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NC_018277	Staphylococcus phage SpaA1, complete genome	39195-39228	1	0.971
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	KT970645	Bacillus phage phi4J1, complete genome	37219-37252	1	0.971
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NC_048628	Bacillus phage BceA1 complete genome	39343-39376	1	0.971
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	KJ024807	Bacillus phage vB_BtS_BMBtp3, complete genome	48282-48315	1	0.971
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NC_023074	Bacillus thuringiensis serovar tenebrionis str. YBT-1765 plasmid pBMB165, complete sequence	28772-28805	1	0.971
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NC_011971	Bacillus cereus Q1 plasmid pBc53, complete sequence	40012-40045	1	0.971
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NC_025424	Bacillus phage Waukesha92, complete genome	3566-3599	1	0.971
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NC_017204	Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT51, complete sequence	48003-48036	1	0.971
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NZ_CP020003	Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed1, complete sequence	3030-3063	1	0.971
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NZ_CP014852	Bacillus thuringiensis strain HD12 plasmid pHD120161, complete sequence	61970-62003	1	0.971
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NZ_CP032610	Bacillus thuringiensis strain QZL38 plasmid p.3, complete sequence	25957-25991	2	0.943
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	CP024687	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-3-257K, complete sequence	223795-223829	2	0.943
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NC_018694	Bacillus thuringiensis MC28 plasmid pMC54, complete sequence	46418-46452	2	0.943
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NC_018487	Bacillus thuringiensis HD-771 plasmid p03, complete sequence	55687-55721	2	0.943
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NZ_CP014286	Bacillus thuringiensis strain Bt185 plasmid pBT1850054, complete sequence	42096-42130	2	0.943
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NZ_CP020749	Bacillus mycoides strain Gnyt1 plasmid unnamed6, complete sequence	28802-28835	2	0.941
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NZ_CP004871	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB46, complete sequence	34306-34340	3	0.914
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NC_017204	Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT51, complete sequence	48006-48040	3	0.914
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NZ_CP020003	Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed1, complete sequence	3033-3067	3	0.914
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NZ_CP011352	Bacillus thuringiensis strain YC-10 plasmid pYC4, complete sequence	44966-45000	3	0.914
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NZ_CP013060	Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-5, complete sequence	17550-17584	3	0.914
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NZ_CP014852	Bacillus thuringiensis strain HD12 plasmid pHD120161, complete sequence	61973-62007	3	0.914
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NZ_CP010095	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB47, complete sequence	34650-34684	3	0.914
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	MK843319	Bacillus phage vB_BthS-TP21T, complete genome	44068-44102	3	0.914
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	KT970646	Bacillus phage phiS58, complete genome	42362-42396	3	0.914
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	HE614281	Staphylococcus phage SpaA1 complete genome	39198-39232	3	0.914
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NC_018277	Staphylococcus phage SpaA1, complete genome	39198-39232	3	0.914
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	KT970645	Bacillus phage phi4J1, complete genome	37222-37256	3	0.914
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NC_048628	Bacillus phage BceA1 complete genome	39346-39380	3	0.914
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	KJ024807	Bacillus phage vB_BtS_BMBtp3, complete genome	48285-48319	3	0.914
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NC_023074	Bacillus thuringiensis serovar tenebrionis str. YBT-1765 plasmid pBMB165, complete sequence	28768-28802	3	0.914
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NC_025424	Bacillus phage Waukesha92, complete genome	3562-3596	3	0.914
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NC_011971	Bacillus cereus Q1 plasmid pBc53, complete sequence	40008-40042	4	0.886
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NZ_CP040343	Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence	283227-283260	4	0.882
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NZ_CP041978	Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence	177236-177269	4	0.882
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	CP041980	Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence	160187-160220	4	0.882
NZ_CP041978_1	1.2\|177228\|35\|NZ_CP041978\|CRISPRCasFinder	177228-177262	35	NZ_CP020749	Bacillus mycoides strain Gnyt1 plasmid unnamed6, complete sequence	28805-28839	6	0.829
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	NC_028838	Clostridium phage phiCD506, complete genome	8316-8349	11	0.676
NZ_CP041978_1	1.5\|177232\|34\|NZ_CP041978\|CRT	177232-177265	34	LN681538	Clostridium phage phiCD481-1, complete genome	8343-8376	11	0.676

1. spacer 1.1|177163|35|NZ_CP041978|CRISPRCasFinder matches to NZ_CP041978 (Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

accctaaatagagggtcctaaccgacttattaata	CRISPR spacer
accctaaatagagggtcctaaccgacttattaata	Protospacer
***********************************

2. spacer 1.1|177163|35|NZ_CP041978|CRISPRCasFinder matches to CP041980 (Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

accctaaatagagggtcctaaccgacttattaata	CRISPR spacer
accctaaatagagggtcctaaccgacttattaata	Protospacer
***********************************

3. spacer 1.1|177163|35|NZ_CP041978|CRISPRCasFinder matches to NZ_CP040343 (Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

accctaaatagagggtcctaaccgacttattaata	CRISPR spacer
accctaaatagagggtcctaaccgacttattaata	Protospacer
***********************************

4. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NZ_CP040343 (Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
acctaccaggttcctccttttatataaaaagagga	Protospacer
***********************************

5. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NZ_CP041978 (Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
acctaccaggttcctccttttatataaaaagagga	Protospacer
***********************************

6. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to CP041980 (Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
acctaccaggttcctccttttatataaaaagagga	Protospacer
***********************************

7. spacer 1.3|177293|36|NZ_CP041978|CRISPRCasFinder matches to NZ_CP040343 (Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tcctaagattcctactcatatggttacttggctgtc	CRISPR spacer
tcctaagattcctactcatatggttacttggctgtc	Protospacer
************************************

8. spacer 1.3|177293|36|NZ_CP041978|CRISPRCasFinder matches to NZ_CP041978 (Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tcctaagattcctactcatatggttacttggctgtc	CRISPR spacer
tcctaagattcctactcatatggttacttggctgtc	Protospacer
************************************

9. spacer 1.3|177293|36|NZ_CP041978|CRISPRCasFinder matches to CP041980 (Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcctaagattcctactcatatggttacttggctgtc	CRISPR spacer
tcctaagattcctactcatatggttacttggctgtc	Protospacer
************************************

10. spacer 1.4|177167|34|NZ_CP041978|CRT matches to NZ_CP040343 (Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

taaatagagggtcctaaccgacttattaataagt	CRISPR spacer
taaatagagggtcctaaccgacttattaataagt	Protospacer
**********************************

11. spacer 1.4|177167|34|NZ_CP041978|CRT matches to NZ_CP041978 (Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

taaatagagggtcctaaccgacttattaataagt	CRISPR spacer
taaatagagggtcctaaccgacttattaataagt	Protospacer
**********************************

12. spacer 1.4|177167|34|NZ_CP041978|CRT matches to CP041980 (Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

taaatagagggtcctaaccgacttattaataagt	CRISPR spacer
taaatagagggtcctaaccgacttattaataagt	Protospacer
**********************************

13. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NZ_CP032610 (Bacillus thuringiensis strain QZL38 plasmid p.3, complete sequence) position: , mismatch: 0, identity: 1.0

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
accaggttcctccttttatataaaaagaggacgc	Protospacer
**********************************

14. spacer 1.5|177232|34|NZ_CP041978|CRT matches to CP024687 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-3-257K, complete sequence) position: , mismatch: 0, identity: 1.0

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
accaggttcctccttttatataaaaagaggacgc	Protospacer
**********************************

15. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NC_018694 (Bacillus thuringiensis MC28 plasmid pMC54, complete sequence) position: , mismatch: 0, identity: 1.0

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
accaggttcctccttttatataaaaagaggacgc	Protospacer
**********************************

16. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NZ_CP040343 (Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
accaggttcctccttttatataaaaagaggacgc	Protospacer
**********************************

17. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NC_018487 (Bacillus thuringiensis HD-771 plasmid p03, complete sequence) position: , mismatch: 0, identity: 1.0

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
accaggttcctccttttatataaaaagaggacgc	Protospacer
**********************************

18. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NZ_CP014286 (Bacillus thuringiensis strain Bt185 plasmid pBT1850054, complete sequence) position: , mismatch: 0, identity: 1.0

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
accaggttcctccttttatataaaaagaggacgc	Protospacer
**********************************

19. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NZ_CP041978 (Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
accaggttcctccttttatataaaaagaggacgc	Protospacer
**********************************

20. spacer 1.5|177232|34|NZ_CP041978|CRT matches to CP041980 (Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
accaggttcctccttttatataaaaagaggacgc	Protospacer
**********************************

21. spacer 1.6|177297|35|NZ_CP041978|CRT matches to NZ_CP041978 (Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aagattcctactcatatggttacttggctgtccgc	CRISPR spacer
aagattcctactcatatggttacttggctgtccgc	Protospacer
***********************************

22. spacer 1.6|177297|35|NZ_CP041978|CRT matches to CP041980 (Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

aagattcctactcatatggttacttggctgtccgc	CRISPR spacer
aagattcctactcatatggttacttggctgtccgc	Protospacer
***********************************

23. spacer 1.6|177297|35|NZ_CP041978|CRT matches to NZ_CP040343 (Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aagattcctactcatatggttacttggctgtccgc	CRISPR spacer
aagattcctactcatatggttacttggctgtccgc	Protospacer
***********************************

24. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NZ_CP004871 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB46, complete sequence) position: , mismatch: 1, identity: 0.971

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
gccaggttcctccttttatataaaaagaggacgc	Protospacer
.*********************************

25. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NZ_CP011352 (Bacillus thuringiensis strain YC-10 plasmid pYC4, complete sequence) position: , mismatch: 1, identity: 0.971

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
gccaggttcctccttttatataaaaagaggacgc	Protospacer
.*********************************

26. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NZ_CP013060 (Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-5, complete sequence) position: , mismatch: 1, identity: 0.971

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
gccaggttcctccttttatataaaaagaggacgc	Protospacer
.*********************************

27. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NZ_CP010095 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB47, complete sequence) position: , mismatch: 1, identity: 0.971

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
gccaggttcctccttttatataaaaagaggacgc	Protospacer
.*********************************

28. spacer 1.5|177232|34|NZ_CP041978|CRT matches to MK843319 (Bacillus phage vB_BthS-TP21T, complete genome) position: , mismatch: 1, identity: 0.971

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
gccaggttcctccttttatataaaaagaggacgc	Protospacer
.*********************************

29. spacer 1.5|177232|34|NZ_CP041978|CRT matches to KT970646 (Bacillus phage phiS58, complete genome) position: , mismatch: 1, identity: 0.971

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
gccaggttcctccttttatataaaaagaggacgc	Protospacer
.*********************************

30. spacer 1.5|177232|34|NZ_CP041978|CRT matches to HE614281 (Staphylococcus phage SpaA1 complete genome) position: , mismatch: 1, identity: 0.971

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
gccaggttcctccttttatataaaaagaggacgc	Protospacer
.*********************************

31. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NC_018277 (Staphylococcus phage SpaA1, complete genome) position: , mismatch: 1, identity: 0.971

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
gccaggttcctccttttatataaaaagaggacgc	Protospacer
.*********************************

32. spacer 1.5|177232|34|NZ_CP041978|CRT matches to KT970645 (Bacillus phage phi4J1, complete genome) position: , mismatch: 1, identity: 0.971

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
gccaggttcctccttttatataaaaagaggacgc	Protospacer
.*********************************

33. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NC_048628 (Bacillus phage BceA1 complete genome) position: , mismatch: 1, identity: 0.971

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
gccaggttcctccttttatataaaaagaggacgc	Protospacer
.*********************************

34. spacer 1.5|177232|34|NZ_CP041978|CRT matches to KJ024807 (Bacillus phage vB_BtS_BMBtp3, complete genome) position: , mismatch: 1, identity: 0.971

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
gccaggttcctccttttatataaaaagaggacgc	Protospacer
.*********************************

35. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NC_023074 (Bacillus thuringiensis serovar tenebrionis str. YBT-1765 plasmid pBMB165, complete sequence) position: , mismatch: 1, identity: 0.971

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
gccaggttcctccttttatataaaaagaggacgc	Protospacer
.*********************************

36. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NC_011971 (Bacillus cereus Q1 plasmid pBc53, complete sequence) position: , mismatch: 1, identity: 0.971

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
gccaggttcctccttttatataaaaagaggacgc	Protospacer
.*********************************

37. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NC_025424 (Bacillus phage Waukesha92, complete genome) position: , mismatch: 1, identity: 0.971

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
gccaggttcctccttttatataaaaagaggacgc	Protospacer
.*********************************

38. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NC_017204 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT51, complete sequence) position: , mismatch: 1, identity: 0.971

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
accaggttcctccttttatataaaaataggacgc	Protospacer
************************** *******

39. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NZ_CP020003 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.971

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
acctggttcctccttttatataaaaagaggacgc	Protospacer
*** ******************************

40. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NZ_CP014852 (Bacillus thuringiensis strain HD12 plasmid pHD120161, complete sequence) position: , mismatch: 1, identity: 0.971

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
acctggttcctccttttatataaaaagaggacgc	Protospacer
*** ******************************

41. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NZ_CP032610 (Bacillus thuringiensis strain QZL38 plasmid p.3, complete sequence) position: , mismatch: 2, identity: 0.943

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
tcataccaggttcctccttttatataaaaagagga	Protospacer
 * ********************************

42. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to CP024687 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-3-257K, complete sequence) position: , mismatch: 2, identity: 0.943

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
tcataccaggttcctccttttatataaaaagagga	Protospacer
 * ********************************

43. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NC_018694 (Bacillus thuringiensis MC28 plasmid pMC54, complete sequence) position: , mismatch: 2, identity: 0.943

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
tcataccaggttcctccttttatataaaaagagga	Protospacer
 * ********************************

44. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NC_018487 (Bacillus thuringiensis HD-771 plasmid p03, complete sequence) position: , mismatch: 2, identity: 0.943

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
tcataccaggttcctccttttatataaaaagagga	Protospacer
 * ********************************

45. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NZ_CP014286 (Bacillus thuringiensis strain Bt185 plasmid pBT1850054, complete sequence) position: , mismatch: 2, identity: 0.943

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
tcataccaggttcctccttttatataaaaagagga	Protospacer
 * ********************************

46. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NZ_CP020749 (Bacillus mycoides strain Gnyt1 plasmid unnamed6, complete sequence) position: , mismatch: 2, identity: 0.941

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
gccaggttcctcctcttatataaaaagaggacgc	Protospacer
.*************.*******************

47. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NZ_CP004871 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB46, complete sequence) position: , mismatch: 3, identity: 0.914

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
atcagccaggttcctccttttatataaaaagagga	Protospacer
*.* .******************************

48. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NC_017204 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT51, complete sequence) position: , mismatch: 3, identity: 0.914

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
tcataccaggttcctccttttatataaaaatagga	Protospacer
 * *************************** ****

49. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NZ_CP020003 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.914

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
tcatacctggttcctccttttatataaaaagagga	Protospacer
 * **** ***************************

50. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NZ_CP011352 (Bacillus thuringiensis strain YC-10 plasmid pYC4, complete sequence) position: , mismatch: 3, identity: 0.914

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
atcagccaggttcctccttttatataaaaagagga	Protospacer
*.* .******************************

51. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NZ_CP013060 (Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-5, complete sequence) position: , mismatch: 3, identity: 0.914

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
atcagccaggttcctccttttatataaaaagagga	Protospacer
*.* .******************************

52. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NZ_CP014852 (Bacillus thuringiensis strain HD12 plasmid pHD120161, complete sequence) position: , mismatch: 3, identity: 0.914

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
tcatacctggttcctccttttatataaaaagagga	Protospacer
 * **** ***************************

53. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NZ_CP010095 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB47, complete sequence) position: , mismatch: 3, identity: 0.914

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
atcagccaggttcctccttttatataaaaagagga	Protospacer
*.* .******************************

54. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to MK843319 (Bacillus phage vB_BthS-TP21T, complete genome) position: , mismatch: 3, identity: 0.914

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
atcagccaggttcctccttttatataaaaagagga	Protospacer
*.* .******************************

55. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to KT970646 (Bacillus phage phiS58, complete genome) position: , mismatch: 3, identity: 0.914

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
atcagccaggttcctccttttatataaaaagagga	Protospacer
*.* .******************************

56. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to HE614281 (Staphylococcus phage SpaA1 complete genome) position: , mismatch: 3, identity: 0.914

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
atcagccaggttcctccttttatataaaaagagga	Protospacer
*.* .******************************

57. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NC_018277 (Staphylococcus phage SpaA1, complete genome) position: , mismatch: 3, identity: 0.914

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
atcagccaggttcctccttttatataaaaagagga	Protospacer
*.* .******************************

58. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to KT970645 (Bacillus phage phi4J1, complete genome) position: , mismatch: 3, identity: 0.914

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
atcagccaggttcctccttttatataaaaagagga	Protospacer
*.* .******************************

59. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NC_048628 (Bacillus phage BceA1 complete genome) position: , mismatch: 3, identity: 0.914

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
atcagccaggttcctccttttatataaaaagagga	Protospacer
*.* .******************************

60. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to KJ024807 (Bacillus phage vB_BtS_BMBtp3, complete genome) position: , mismatch: 3, identity: 0.914

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
atcagccaggttcctccttttatataaaaagagga	Protospacer
*.* .******************************

61. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NC_023074 (Bacillus thuringiensis serovar tenebrionis str. YBT-1765 plasmid pBMB165, complete sequence) position: , mismatch: 3, identity: 0.914

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
atcagccaggttcctccttttatataaaaagagga	Protospacer
*.* .******************************

62. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NC_025424 (Bacillus phage Waukesha92, complete genome) position: , mismatch: 3, identity: 0.914

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
atcagccaggttcctccttttatataaaaagagga	Protospacer
*.* .******************************

63. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NC_011971 (Bacillus cereus Q1 plasmid pBc53, complete sequence) position: , mismatch: 4, identity: 0.886

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
ataagccaggttcctccttttatataaaaagagga	Protospacer
*.  .******************************

64. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NZ_CP040343 (Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.882

accaggttcctccttttatataaaaagaggacgc----	CRISPR spacer
----ggttcctccttttatataaaaagaggacgcattt	Protospacer
    ******************************

65. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NZ_CP041978 (Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.882

accaggttcctccttttatataaaaagaggacgc----	CRISPR spacer
----ggttcctccttttatataaaaagaggacgcattt	Protospacer
    ******************************

66. spacer 1.5|177232|34|NZ_CP041978|CRT matches to CP041980 (Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.882

accaggttcctccttttatataaaaagaggacgc----	CRISPR spacer
----ggttcctccttttatataaaaagaggacgcattt	Protospacer
    ******************************

67. spacer 1.2|177228|35|NZ_CP041978|CRISPRCasFinder matches to NZ_CP020749 (Bacillus mycoides strain Gnyt1 plasmid unnamed6, complete sequence) position: , mismatch: 6, identity: 0.829

acctaccaggttcctccttttatataaaaagagga	CRISPR spacer
catagccaggttcctcctcttatataaaaagagga	Protospacer
  . .*************.****************

68. spacer 1.5|177232|34|NZ_CP041978|CRT matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 11, identity: 0.676

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
tttaaaatcctcctattatataaaaaaaggatag	Protospacer
 ..*.. ******* ***********.****..

69. spacer 1.5|177232|34|NZ_CP041978|CRT matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 11, identity: 0.676

accaggttcctccttttatataaaaagaggacgc	CRISPR spacer
tttaaaatcctcctattatataaaaaaaggatag	Protospacer
 ..*.. ******* ***********.****..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

17702 : 91173

Bacillus_phage(33.33%)

protease,transposase,integrase

attL 32593:32610|attR 70695:70712

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000118205.1\|17702_18626_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_000727316.1\|18832_19021_+	hypothetical protein	NA	NA	NA	NA
WP_001233525.1\|19654_20005_+	PrgI family protein	NA	NA	NA	NA
WP_000892011.1\|20005_20920_+	hypothetical protein	NA	NA	NA	NA
WP_000765116.1\|20922_21894_+	hypothetical protein	NA	NA	NA	NA
WP_000914978.1\|22609_24442_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.7e-32	27.0
WP_000878407.1\|24732_25701_+	hypothetical protein	NA	NA	NA	NA
WP_000884601.1\|25731_29712_+	hypothetical protein	NA	NA	NA	NA
WP_000081400.1\|29708_31916_+	peptidoglycan DD-metalloendopeptidase family protein	A7KUS1	Bacillus_phage	3.0e-15	40.7
WP_002163382.1\|31932_32508_+	hypothetical protein	NA	NA	NA	NA
32593:32610	attL	NA	NA	NA	NA
WP_000426065.1\|33045_33351_+	DUF2325 domain-containing protein	NA	NA	NA	NA
WP_002163781.1\|33801_34506_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_001272214.1\|34685_35558_+	hypothetical protein	NA	NA	NA	NA
WP_001186861.1\|36168_37314_-	DUF418 domain-containing protein	NA	NA	NA	NA
WP_000725580.1\|37353_37836_-	thioredoxin family protein	NA	NA	NA	NA
WP_000656864.1\|38692_39202_+	hypothetical protein	NA	NA	NA	NA
WP_001026031.1\|39198_40566_+	hypothetical protein	NA	NA	NA	NA
WP_000960106.1\|40549_41686_+	hypothetical protein	NA	NA	NA	NA
WP_167309133.1\|41949_42621_+	hypothetical protein	NA	NA	NA	NA
WP_033672096.1\|42617_43121_+	hypothetical protein	NA	NA	NA	NA
WP_000185060.1\|43943_45533_-	hypothetical protein	NA	NA	NA	NA
WP_001057797.1\|45708_46050_-	YolD-like family protein	NA	NA	NA	NA
WP_000272570.1\|46046_47312_-	Y-family DNA polymerase	O64031	Bacillus_phage	5.4e-102	46.2
WP_000215994.1\|47628_48327_+	hypothetical protein	NA	NA	NA	NA
WP_000376629.1\|48388_49147_+	hypothetical protein	NA	NA	NA	NA
WP_002163780.1\|49863_50451_+	hypothetical protein	NA	NA	NA	NA
WP_033672094.1\|50675_50870_-	hypothetical protein	NA	NA	NA	NA
WP_000894389.1\|51260_51692_+	hypothetical protein	NA	NA	NA	NA
WP_000843061.1\|51759_52038_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	2.5e-12	57.4
WP_000019024.1\|52629_52956_-	helix-turn-helix transcriptional regulator	A0A0A7AQV8	Bacillus_phage	7.8e-21	45.4
WP_001021543.1\|53094_54138_-\|integrase	tyrosine-type recombinase/integrase	A0A0E3T6D9	Bacillus_phage	1.5e-09	24.1
WP_000386116.1\|54736_55249_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000045596.1\|55537_55792_-	hypothetical protein	NA	NA	NA	NA
WP_000107157.1\|58418_59651_+	WXG100 family type VII secretion target	A0A2H4J389	uncultured_Caudovirales_phage	6.8e-65	58.9
WP_000790845.1\|60151_60532_-	DUF4878 domain-containing protein	NA	NA	NA	NA
WP_000200275.1\|63254_63554_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_033672054.1\|63790_64279_+	hypothetical protein	NA	NA	NA	NA
WP_152692390.1\|66156_67502_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.4e-111	73.7
WP_046648578.1\|69550_70117_-	recombinase family protein	A0A1J1J8Z4	Escherichia_phage	4.4e-43	50.0
WP_046648576.1\|70314_70665_-	hypothetical protein	NA	NA	NA	NA
WP_046648574.1\|70856_71099_+	sublancin family glycopeptide	NA	NA	NA	NA
70695:70712	attR	NA	NA	NA	NA
WP_046648584.1\|71200_73306_+	peptidase domain-containing ABC transporter	F2Y1V6	Organic_Lake_phycodnavirus	9.0e-09	26.8
WP_046648572.1\|73495_73909_+	thioredoxin family protein	NA	NA	NA	NA
WP_167309134.1\|73927_74653_+	SunS family peptide S-glycosyltransferase	NA	NA	NA	NA
WP_167309135.1\|74667_75222_+	hypothetical protein	NA	NA	NA	NA
WP_071713418.1\|75214_75604_+	disulfide bond formation protein B	NA	NA	NA	NA
WP_001226074.1\|78729_79305_+	recombinase family protein	M9Q1K0	Clostridium_phage	4.6e-16	30.3
WP_000383881.1\|79417_80263_+	AraC family transcriptional regulator	A0A1B0RXG1	Streptococcus_phage	4.4e-23	42.9
WP_033656251.1\|80390_80966_+	recombinase family protein	M9Q1K0	Clostridium_phage	5.6e-14	30.6
WP_000701227.1\|81220_81673_-	hypothetical protein	NA	NA	NA	NA
WP_000475617.1\|82036_82735_+	N-acetylmuramoyl-L-alanine amidase	A0A0N6W8I1	Bacillus_phage	5.2e-46	47.4
WP_002009432.1\|83148_83658_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_014315595.1\|83701_83875_-	HIT family protein	D7NW73	Streptomyces_phage	7.6e-07	45.8
WP_000588560.1\|83989_85243_+\|transposase	IS21-like element ISBce16 family transposase	U5N3F9	Enterobacteria_phage	2.5e-51	33.2
WP_000993737.1\|85239_85998_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.3e-61	46.6
WP_078214948.1\|86024_86210_-	HIT domain-containing protein	NA	NA	NA	NA
WP_000232781.1\|86295_86505_-	recombinase family protein	NA	NA	NA	NA
WP_000041618.1\|86809_87673_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000449611.1\|87726_88080_+	VOC family protein	NA	NA	NA	NA
WP_012477907.1\|88125_91173_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	1.2e-49	22.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP041979

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041979_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041979_1

1344988-1345088

Orphan

Consensus_repeat	Method
CCTGTTGGCCCCCCAGGTGGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041979_1

>merge|NZ_CP041979|1|1344988-1345088|CRISPRCasFinder
CCTGTTGGCCCCCCAGGTGGACCGGGTGGACCAGCTGGACCAGTCACTCCACTTGACGGACCAACTGGACCGGTAACTCCTGTTGGCCCTCCAGGTGGACC

>NZ_CP041979|1|1|1344988-1345088|CRISPRCasFinder
CCTGTTGGCCCCCCAGGTGGACC	GGGTGGACCAGCTGGACCAGTCACTCCACTTGACGGACCAACTGGACCGGTAACT
CCTGTTGGCCCTCCAGGTGGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041979.1\|WP_000938438.1\|1349671_1350220_-\|DUF2179-domain-containing-protein	unknown	unknown	gnl\|CDD\|235234
NZ_CP041979.1\|WP_041184588.1\|1353012_1353807_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|372681
NZ_CP041979.1\|WP_000615111.1\|1339781_1340243_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP041979.1\|WP_000416969.1\|1338210_1339332_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP041979.1\|WP_000679189.1\|1346067_1346823_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP041979.1\|WP_049111628.1\|1333520_1334549_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP041979.1\|WP_014893584.1\|1348873_1349251_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041979.1\|WP_049111625.1\|1334885_1335449_-\|maltose-O-acetyltransferase	unknown	unknown	gnl\|CDD\|182235
NZ_CP041979.1\|WP_000402270.1\|1350881_1352210_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NZ_CP041979.1\|WP_000540475.1\|1332569_1333019_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240033
NZ_CP041979.1\|WP_000834832.1\|1347519_1348707_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NZ_CP041979.1\|WP_049111622.1\|1337023_1338181_+\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|237107
NZ_CP041979.1\|WP_049113071.1\|1350415_1350829_-\|ATP-synthase-subunit-I	unknown	unknown	gnl\|CDD\|377159
NZ_CP041979.1\|WP_001280789.1\|1335634_1336633_-\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|183592
NZ_CP041979.1\|WP_000648791.1\|1353918_1354686_+\|glucose-1-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|131672
NZ_CP041979.1\|WP_000687577.1\|1333078_1333459_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319905
NZ_CP041979.1\|WP_014893586.1\|1346864_1347407_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378696
NZ_CP041979.1\|WP_049112376.1\|1330867_1331590_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP041979.1\|WP_000539717.1\|1339395_1339644_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_CP041979.1\|WP_000285644.1\|1352329_1352737_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133406

Protein	Function_ID	Function_description	E-value
NZ_CP041979.1\|WP_000938438.1\|1349671_1350220_-\|DUF2179-domain-containing-protein	gnl\|CDD\|235234	PRK04164, PRK04164, hypothetical protein; Provisional.	6.88941e-83
NZ_CP041979.1\|WP_041184588.1\|1353012_1353807_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|372681	pfam13704, Glyco_tranf_2_4, Glycosyl transferase family 2. Members of this family of prokaryotic proteins include putative glucosyltransferases,.	1.15985e-09
NZ_CP041979.1\|WP_000615111.1\|1339781_1340243_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.98391e-13
NZ_CP041979.1\|WP_000416969.1\|1338210_1339332_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	1.80374e-58
NZ_CP041979.1\|WP_000679189.1\|1346067_1346823_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.44858e-23
NZ_CP041979.1\|WP_049111628.1\|1333520_1334549_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	8.12876e-24
NZ_CP041979.1\|WP_000648791.1\|1353918_1354686_+\|glucose-1-phosphate-cytidylyltransferase	gnl\|CDD\|131672	TIGR02623, Glucose-1-phosphate_cytidylyltransferase, glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_CP041979.1\|WP_049111625.1\|1334885_1335449_-\|maltose-O-acetyltransferase	gnl\|CDD\|182235	PRK10092, PRK10092, maltose O-acetyltransferase; Provisional.	4.00237e-100
NZ_CP041979.1\|WP_000402270.1\|1350881_1352210_-\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	1.63691e-160
NZ_CP041979.1\|WP_000540475.1\|1332569_1333019_+\|NUDIX-hydrolase	gnl\|CDD\|240033	cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.70311e-58
NZ_CP041979.1\|WP_000834832.1\|1347519_1348707_+\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.49645e-70
NZ_CP041979.1\|WP_049111622.1\|1337023_1338181_+\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|237107	PRK12464, PRK12464, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP041979.1\|WP_049113071.1\|1350415_1350829_-\|ATP-synthase-subunit-I	gnl\|CDD\|377159	pfam03899, ATP-synt_I, ATP synthase I chain. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI. AtpI is a Ca2+/Mg2+ transporter.	2.26946e-07
NZ_CP041979.1\|WP_001280789.1\|1335634_1336633_-\|tryptophan--tRNA-ligase	gnl\|CDD\|183592	PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional.	0
NZ_CP041979.1\|WP_000687577.1\|1333078_1333459_-\|hypothetical-protein	gnl\|CDD\|319905	cd07241, VOC_BsYyaH, vicinal oxygen chelate (VOC) family protein similar to Bacillus subtilis YyaH. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	3.02997e-64
NZ_CP041979.1\|WP_014893586.1\|1346864_1347407_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|378696	pfam11706, zf-CGNR, CGNR zinc finger. This family consists of a C-terminal zinc finger domain. It seems likely to be DNA-binding given the conservation of many positively charged residues. The domain is named after a highly conserved motif found in many members of the family.	1.1888e-17
NZ_CP041979.1\|WP_049112376.1\|1330867_1331590_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	0.00175837
NZ_CP041979.1\|WP_000539717.1\|1339395_1339644_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	2.66615e-09
NZ_CP041979.1\|WP_000285644.1\|1352329_1352737_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133406	cd04779, HTH_MerR-like_sg4, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	7.57424e-62

>NZ_CP041979.1|WP_000615111.1|1339781_1340243_+|GNAT-family-N-acetyltransferase
MIQKLITTSHKTATSILSIQIPAYEIEAKYINSTAIPRLYDTVADIQSCDEIFYGYFFEDTLAGFISFKMDEEEVDIHRLVVSPDHFHKGIATKLLLYVFDMFSPSKTYIVQTGKENTPALSLYKKHGFIAVKEIILPDGVVLTSLKKSENNK
>NZ_CP041979.1|WP_000539717.1|1339395_1339644_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGWIITLIVGAIIGAIAGSITGKDFPAGMFGNIIAGLLGAWLGGKLFGDWGPSLGGIHIVPALLGSIVLVLIVSFVVKAARK
>NZ_CP041979.1|WP_000416969.1|1338210_1339332_-|AI-2E-family-transporter
MEKVSLRKRDKLKKFFREHNYLAVLLGFALLFINILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKKGVSRIVSIASIYLIVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRFGESNLLGKIQENLNIDVASMVKDYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTHGYRFVKLNT
>NZ_CP041979.1|WP_049111622.1|1337023_1338181_+|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MVKYISILGSTGSIGTSALDVVSAHPEHFKIIGLTANYNIELLEQQIKTFQPRIVSVATKELADTLRTRISTNVKITYGTDGLIAVATHPDSNLVLSSVVGVSGLLPTIEALKAKKDIAIANKETLVAAGHIVTELAKQNGCRLIPVDSEHSAIFQCLNGENNKEIDKLIVTASGGAFRDKTREEMNTLQAKDALKHPNWLMGAKLTIDSATLMNKGFEVMEARWLFDIPYEKIDVMIHKESIIHSLVEFIDGSVIAQLGAPDMRMPIQYAFHYPTRLPSSYEKLNLLEIGSLHFEKPDLEKFPCLQYAYECGKIGGTTPAVLNAANEIANALFLKNETAFFDIEKTIYKTVEAHHNVKDPSLDAILEADQWARQYAHQLLIKKS
>NZ_CP041979.1|WP_001280789.1|1335634_1336633_-|tryptophan--tRNA-ligase
MSDKIMLTGIKPTGYPHLGNYIGAIKPALQMSKKNEGKALYFIADYHALNAVHDPSQFSSYTKEVAATWLSLGLGEDVIFYRQTEVPEILELAWILACLTPKGLMNRAHAYKAKVEQNKEAGLEVDAGVNMGLYTYPILMAADILLFQATHVPVGKDQIQHIEIARDIATYVNHTFGTTFTLPEYVIQEEGAILPGLDGRKMSKSYGNVIPLFAEKEKLRKLIFKIKTDSSLPNEPKELETLFTIYKEFATEDEMQSMREKYETGIGWGDVKKELFRVVDRELAGPREKYAMYMNEPNLLYESLEEGAEKARAIAKVNLAEIKKRIGFEGGR
>NZ_CP041979.1|WP_049111625.1|1334885_1335449_-|maltose-O-acetyltransferase
MKTEKEKMLAGEIYIADDEELVADRVEAKRLTRLYNEAMETGDEQRFTLLNQLLGSSADGKAQINPDFRCDYGYNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKDVPNNVVVGGNPAKVIKTIDL
>NZ_CP041979.1|WP_049111628.1|1333520_1334549_-|ROK-family-protein
MSEQFVTQKSIKETILRSIRKVLLERGSATKVELSNTLEISFPTISKFIEKMKQDGEVTLAGLDDSSGGRRAKRYEYNPEYMLGLAIFLERNETNYTIFNCLGEVKEQGSTSSMLIDTGVNLLSKHIEGLIATFPKISSISIGVPGSVDNGRIFYIPGYEKFQNFNLKSHLEEQFSIPVVIENDMNAAVLGYYKNTGNYDNSSLVYLYSGQNGPGAGIMVNGDVVRGSTFFSGEISFVPQYDNKNFLQALRSEDSNNPEEYNIDAITRLIATCIAIINPHAFIFCDDEVNQFVIDQIVKTCPQYIPAEHIPKITVSNWKEDYLYGLKSLGLDLMITRTNKEN
>NZ_CP041979.1|WP_000687577.1|1333078_1333459_-|hypothetical-protein
MKIEHVAIWVNDLVGMRDFYKQYFNGEENSLYHNPKKQFKSYFITFEGGARLELMKRVGIEDALQTETIGYAHIAFSVGSKEKVNELTNTLREAGYAVLNGPRTTGDGYYESVVSDPEGNQIEITI
>NZ_CP041979.1|WP_000540475.1|1332569_1333019_+|NUDIX-hydrolase
MGYIEDMRNLVGNHPLILIGSHAIILNENNEILLQLRTDFNRWGIIGGALEYNETLEDALKREVYEETGLIIKNPELFRTYSGPDFFQIYPNGDQVHGVLVVYICREFHGELVCDQTESKELRFFPLDELPSTLHPVIEGILRDFHHSN
>NZ_CP041979.1|WP_049112376.1|1330867_1331590_-|GNAT-family-N-acetyltransferase
MTTIEQLEKHFKIRRNASSIMIKENNAEIFTEEQLKEMMQYCVAEAEEEGIENLHFEISSKSPNYNMYKKCFETYWFEYVTENIIVFKDLYKVEDVESEIDFKLIEEVGEDAFYSLWSEMTEEQVTYDQFVNMMLQEIGEQWKEHCLTASVGEEPIGIVIPHIEKGTLEEGKLMYFAVAPNMRNKGYEAAFFTGAMFVLKEIGASYYIGETNVKNEWMKDVFEKNGCQLLSSTERYVRKF
>NZ_CP041979.1|WP_000679189.1|1346067_1346823_-|class-I-SAM-dependent-methyltransferase
MKGTQMLALNKKCWDTVAPYFFQVDCLPKYGPYTASEDEIHLFDSIKGKKVLDIGCGSGHSLQYMAEHGAEELWGLDLSSTQIETAHKTLQSWNPKLICGAMEEEVDIPKGYFDIVYSIYALGWTSDLRKTLELIYSYVKPGGSFVFSWEHPVYSNLMYGTEEIAFSSSYHEETPITFETFKGEDVQATLYKRKISTYINELHRAGFTIERIEEPEPSSSFDEELAEPSPKYYSLHKARMVPTTFIIKARK
>NZ_CP041979.1|WP_014893586.1|1346864_1347407_-|PadR-family-transcriptional-regulator
MSQNAPNELEYIREFLNTWRIPNDTREAIDLLQTEEDIKLFMKEYFHEEFTFHTIEELKSFREDIRAAIEGEGSLQKWLEKYPFHVHVMEDMKGITYEPIHEETVYTKVLSIVLIAVQENLWGRLKACPDCRWVFYDNSRNGSKRWCGMYAGEEGGRACGTIAKVKNYRAKRKGRSGYNV
>NZ_CP041979.1|WP_000834832.1|1347519_1348707_+|MFS-transporter
MKSFSIPIRFMLISSFFMSFGYFAVYAFLAIYLLSFLHFSTFQVGTVLTVIIITSRVIPLFSGLIADKIGYIIMMIAGLFLRGIGFIALGICSDFYTVSISSALIGFGTAFYEPAARAIFGSQPAHLRKNLFTYLNLSFNCGAIIGPIAGGFLLLLDPIYAFSLTGSLMLLFALIFYLLKNHFQVTTESTSIALGIQTILQNKSFLLFSFIMIFFYIMFTQLTVALPLHMKNISNSNQLATLVITINAITGVIFMVLFRKLFHKYNTLSFIKYGILLMSISFLLIPLFQHPYWLFICVIFFTIGETLVLPNADIAIANYSNESYTATFFGFYQLSLAFGFIIGNYTGTWFKSKLNGMYTPWLIFGGIGLIGFISLHILNIKKERSKEDIYLLEKY
>NZ_CP041979.1|WP_014893584.1|1348873_1349251_+|hypothetical-protein
MKKKLIVLLFTGIILSGCSAIAENSLETGNGSMALLTPTITTKDNELEIKTEGIDENKVTFIYVANKKVLEQKLKNGESYKLNIKDIEHAHRTDYKPKVQLLQTKDDNDDGEIVTFKQVRYTVKN
>NZ_CP041979.1|WP_000938438.1|1349671_1350220_-|DUF2179-domain-containing-protein
MLQALLIFVLQIIYVPILTIRTILLVKNQTRSAAGVGLLEGAIYIVSLGIVFQDLSNWMNIVAYVIGFSAGLLLGGYIENKLAIGYITYQVSLLDRCNELVDELRHSGFGVTVFEGEGINSIRYRLDIVAKRSREKELLEIINEIAPKAFMSSYEIRSFKGGYLTKAMKKRALMKKKDEHAS
>NZ_CP041979.1|WP_049113071.1|1350415_1350829_-|ATP-synthase-subunit-I
MIQEALRVYRLQLYVIFSGLLLMWTITPFGKQVTGFGIGLAVSAYCLWLLARRVEKLGKSIVMKERAPGLGVLNRFAAAILGAIIMYEIEHEMEMWAFGTGILGGHFLMIANLAYANMQVVKEEEKKREHASKNIEL
>NZ_CP041979.1|WP_000402270.1|1350881_1352210_-|HlyC/CorC-family-transporter
MEIFNLVMVAILIAFTGFFVAAEFAIVKVRSSRIDQLVAEGKRGALAAKKVTTNLDEYLSACQLGITVTAMGLGWLGEPTIEKLLHPLFEKWNLNPSISSVLTFGLAFMIMTYLHVVVGELAPKTMAIQKAERVTLLLAGPLMMFYKVMYPFIWVLNGSARVVTGLFGLKPASEHEVAHTEEELRLILSDSYESGEINQAEYKYVNNIFEFDNRIAKEIMVPRTEIIGFYLEDSVEEHMKVIQNERYTRYPIFGEDKDDIIGMVNVKDFFIRYMTEDQKDLSSIRSYMRPIIEVMETTPIHDLLLQMQKKRIPMAVLYDEYGGTAGIVTLEDILEEIVGEIRDEYDEDEAPPIQHVNEQHIIVDGKVLISEVKDLFGLHIEEDDVDTIGGWIMMQNHEIEEGQHVEAEGYEFKVLEKDAYQIKRVEIRKMEQEQEEEKAATV
>NZ_CP041979.1|WP_000285644.1|1352329_1352737_-|MerR-family-transcriptional-regulator
MYRIGQLALMAHVSKRTIDYYTNLGILKAERSQSNYRYYDETAVETLQFIEKCKEMHMPLCEIKEKIEEKKKLLGINEHVSKQVNEVTDHIHRLEAELTELKPLLDGLTDSQREKISKSLSGQTTALIQTLALLL
>NZ_CP041979.1|WP_041184588.1|1353012_1353807_+|glycosyltransferase-family-2-protein
MQLEEIKITRTVISHFYNEEYLLPWWLMHHTKIFDHGILINRGSTDRSVEICKLFAPHWEVRDSRFLEFDPTNTDIEVMEIEREVSGWKMVLNTTEFLCCNNVEEFFSSLHTLGQNMYAIRMIVMIDKHDYNYSKLRYSIPLIEQRYHGLFPYKPEIGCAWRFIHNHLDGAYLPGRHFTRHQPIVYNSPSFIVKFYFSPWNEHTKARKLQIIPTLSKKGIQMGLQSHYGQSLEQIETRFLEFSSLTQDLRKHPEYQQLFPKFKP
>NZ_CP041979.1|WP_000648791.1|1353918_1354686_+|glucose-1-phosphate-cytidylyltransferase
MKAVILAGGYGTRIGEETHLKPKPMIEIGTKPILWHIMSLYSHYGITEFIICLGYKGYAIKEFFLNYNLHMSDFTIHLRDNTITSHSHRVEPWKVTLIDTGVNTETGGRVKKIQNFVGDEPFCLTYGDGLSNVNIKELIAFHKKHGKMATVTAVQPPGRFGSLILDKQSVTSFQEKPLGDGGWVNGGFFVLNPEVFNYISGDKSVFETDTLVQLVNKNELSAYQHTGFWHPMDTLRDKNKLVELWESNNAPWKVW

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Crispr_ID: NZ_CP041979_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041979_2

1676069-1676361

Orphan

Consensus_repeat	Method
AAGGTAACACGGGCGCTAC	CRT

7 spacers

The CRISPR arrays of NZ_CP041979_2

>merge|NZ_CP041979|2|1676069-1676361|CRT
AGGTAACACGGGCGCTACTGGTGCCACTGGACCTCAAGGTAACACGGGCTACTGGTGCCACTGGACCTCAGGGTGCTCAAGGTAACACGGGCGCTACTGGCGCTACTGGACCTCAAGGTAACACGGGCGCTACCGGCGCTACTGGACCTCAAGGCGTTCAAGGTAACAGAGCGCTACTGGTGCCACTGGACCTCAAGGCGTTCAAGGTAACACAGGCGCTACTGGCGCTACCGGACCTCGAGGTAACACGGGCGCTACTGGTGCTACTGGACCTCAGGGTAACACGGGCGCTA

>NZ_CP041979|2|1|1676069-1676361|CRT
AGGTAACACGGGCGCTAC	TGGTGCCACTGGACCTCA
AGGTAACACGGGCTACTG	GTGCCACTGGACCTCAGGGTGCTCA
AGGTAACACGGGCGCTAC	TGGCGCTACTGGACCTCA
AGGTAACACGGGCGCTAC	CGGCGCTACTGGACCTCAAGGCGTTC
AAGGTAACAGAGCGCTAC	TGGTGCCACTGGACCTCAAGGCGTTC
AAGGTAACACAGGCGCTA	CTGGCGCTACCGGACCTC
GAGGTAACACGGGCGCTA	CTGGTGCTACTGGACCTC
AGGGTAACACGGGCGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041979.1\|WP_000391386.1\|1671148_1672423_-\|GTPase-HflX	unknown	unknown	gnl\|CDD\|274455
NZ_CP041979.1\|WP_000734633.1\|1680871_1681804_-\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|226112
NZ_CP041979.1\|WP_001179079.1\|1685840_1687004_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341466
NZ_CP041979.1\|WP_000228316.1\|1687120_1687663_-\|DUF420-domain-containing-protein	unknown	unknown	gnl\|CDD\|225204
NZ_CP041979.1\|WP_000813896.1\|1679185_1679410_-\|RNA-chaperone-Hfq	unknown	unknown	gnl\|CDD\|179001
NZ_CP041979.1\|WP_167309186.1\|1676946_1677078_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041979.1\|WP_000656779.1\|1669319_1669709_-\|transcriptional-repressor-GlnR	unknown	unknown	gnl\|CDD\|133380
NZ_CP041979.1\|WP_001102620.1\|1667235_1667559_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP041979.1\|WP_000413738.1\|1665188_1665809_+\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP041979.1\|WP_000991471.1\|1664390_1665047_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP041979.1\|WP_000460299.1\|1669884_1671156_-\|methionine-gamma-lyase-family-protein	unknown	unknown	gnl\|CDD\|311036
NZ_CP041979.1\|WP_000032389.1\|1666700_1667243_-\|DUF1700-domain-containing-protein	unknown	unknown	gnl\|CDD\|285278
NZ_CP041979.1\|WP_000640847.1\|1684021_1684933_-\|1-phosphofructokinase	unknown	unknown	gnl\|CDD\|238570
NZ_CP041979.1\|WP_000814415.1\|1680566_1680812_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041979.1\|WP_000957276.1\|1684929_1685682_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP041979.1\|WP_000312265.1\|1672515_1673139_+\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NZ_CP041979.1\|WP_049112629.1\|1682151_1684008_-\|PTS-transporter-subunit-EIIA	unknown	unknown	gnl\|CDD\|236740
NZ_CP041979.1\|WP_000135330.1\|1667936_1669271_-\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|273198
NZ_CP041979.1\|WP_049111954.1\|1665893_1666700_-\|DUF4097-family-beta-strand-repeat-protein	unknown	unknown	gnl\|CDD\|372574
NZ_CP041979.1\|WP_049112626.1\|1679431_1680385_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626

Protein	Function_ID	Function_description	E-value
NZ_CP041979.1\|WP_000391386.1\|1671148_1672423_-\|GTPase-HflX	gnl\|CDD\|274455	TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). [Unknown function, General].	0
NZ_CP041979.1\|WP_000734633.1\|1680871_1681804_-\|SH3-domain-containing-protein	gnl\|CDD\|226112	COG3584, COG3584, Uncharacterized protein conserved in bacteria [Function unknown].	5.33765e-36
NZ_CP041979.1\|WP_001179079.1\|1685840_1687004_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341466	cd08187, BDH, Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction is 50-fold lower than that in the forward direction. The NADH-BDH has higher activity with longer chained aldehydes and is inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases. This family also includes E. coli YqhD enzyme, an NADP-dependent dehydrogenase whose activity measurements with several alcohols demonstrate preference for alcohols longer than C3. The active site of YqhD contains a Zn metal, and a modified NADPH cofactor bearing OH groups on the saturated C5 and C6 atoms, possibly due to oxygen stress on the enzyme, which would functionally work under anaerobic conditions.	0
NZ_CP041979.1\|WP_000228316.1\|1687120_1687663_-\|DUF420-domain-containing-protein	gnl\|CDD\|225204	COG2322, COG2322, Predicted membrane protein [Function unknown].	1.75148e-56
NZ_CP041979.1\|WP_000813896.1\|1679185_1679410_-\|RNA-chaperone-Hfq	gnl\|CDD\|179001	PRK00395, hfq, RNA-binding protein Hfq; Provisional.	3.4363e-41
NZ_CP041979.1\|WP_000656779.1\|1669319_1669709_-\|transcriptional-repressor-GlnR	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	6.89797e-24
NZ_CP041979.1\|WP_001102620.1\|1667235_1667559_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.56565e-24
NZ_CP041979.1\|WP_000413738.1\|1665188_1665809_+\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	9.98492e-112
NZ_CP041979.1\|WP_000991471.1\|1664390_1665047_-\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	7.33037e-31
NZ_CP041979.1\|WP_000460299.1\|1669884_1671156_-\|methionine-gamma-lyase-family-protein	gnl\|CDD\|311036	pfam06838, Met_gamma_lyase, Methionine gamma-lyase. This is a putative pyridoxal 5'-phosphate-dependent methionine gamma-lyase enzyme involved in methionine catabolism.	0
NZ_CP041979.1\|WP_000032389.1\|1666700_1667243_-\|DUF1700-domain-containing-protein	gnl\|CDD\|285278	pfam08006, DUF1700, Protein of unknown function (DUF1700). This family contains many hypothetical bacterial proteins and putative membrane proteins.	2.81152e-83
NZ_CP041979.1\|WP_000640847.1\|1684021_1684933_-\|1-phosphofructokinase	gnl\|CDD\|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	1.49313e-142
NZ_CP041979.1\|WP_000957276.1\|1684929_1685682_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	9.45205e-82
NZ_CP041979.1\|WP_000312265.1\|1672515_1673139_+\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	7.95315e-60
NZ_CP041979.1\|WP_049112629.1\|1682151_1684008_-\|PTS-transporter-subunit-EIIA	gnl\|CDD\|236740	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional.	6.42697e-143
NZ_CP041979.1\|WP_000135330.1\|1667936_1669271_-\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|273198	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation. [Amino acid biosynthesis, Glutamate family].	0
NZ_CP041979.1\|WP_049111954.1\|1665893_1666700_-\|DUF4097-family-beta-strand-repeat-protein	gnl\|CDD\|372574	pfam13349, DUF4097, Putative adhesin. This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.	2.4553e-17
NZ_CP041979.1\|WP_049112626.1\|1679431_1680385_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	7.8053e-167

>NZ_CP041979.1|WP_000312265.1|1672515_1673139_+|trimeric-intracellular-cation-channel-family-protein
MAWEIFSIIGTIAFALSGAIVAMEEDYDIFGVYILGMATAFGGGALRNLLIGYPIVAFWQQDMLFQIALLSMTIIFLFPNKLIRHWKKWENITDAIGLSAFAVQGALYAQKLNLPISATIVAAVLTGIGGGIIRDLLARRKPLVLRADVYAFWTILAGFLIGAQIIVSDWALYTLFILIVCFRMVSIHYKWHLPHRRIDTNERSMHK
>NZ_CP041979.1|WP_000391386.1|1671148_1672423_-|GTPase-HflX
MEEKEKVILVGCQLPQDDDEKFMHSMKELASLAKTARAELLVSTTQKRPKFHPATYIGKGKLEELAMLTEELEPDVIVFNNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQGLSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQVSLIGYTNAGKSTLFNRLTEADTFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDLPTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSELEINHIPIITLYNKKDELHQNFIPFPKSDFLMTSAFEENDLLHIKEAIETKMKKEMNRYQVEIPPSEGKLLTLLKTETLLTKMEFLEDKFVYDCAGYIFAHSSLNVQLKRFLVEEGENKNV
>NZ_CP041979.1|WP_000460299.1|1669884_1671156_-|methionine-gamma-lyase-family-protein
MFDRLKNGEKIAPIVKEVESQITEVHKRADEVIESNQFRVLESFRKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEEGLVDFRAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKSDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDKDRMIAFCQAIQYASPINSHFTPYANYMPGYEDDVIMAAGTFIQGASIELSADGPIRPPYVAYVQGGLTYSHVKIAICSAIDALIEKELLTIS
>NZ_CP041979.1|WP_000656779.1|1669319_1669709_-|transcriptional-repressor-GlnR
MKEDRRSAPLFPIGIVMDLTQLSARQIRYYEEHNLISPTRTKGNRRLFSFNDVDKLLEIKDLLDQGLNMAGIKQVLLMKENQTEAVKVKEETKEISKTELRKILRDELQHTGRFNRTSLRQGDISRFFH
>NZ_CP041979.1|WP_000135330.1|1667936_1669271_-|type-I-glutamate--ammonia-ligase
MARYTKEDIFRLAKEENVKYIRLQFTDLLGVIKNVEIPVSQLTKALDNKMMFDGSSIEGFVRIEESDMYLYPDLDTWVIFPWTAEKGKVARLICDIYNADGTPFEGDPRNNLKRVLKEMEALGFSDFNLGPEPEFFLFKVDEKGNPTLELNDNGGYFDLAPMDLGENCRRDIVLELEEMGFEIEASHHEVAPGQHEIDFKYANAIRSCDDIQTFKLVVKTIARKHGLHATFMPKPLYGVNGSGMHCNLSLFKNGENVFYDQNGDLQLSDDARHFIAGILKHAPAFTAVANPTVNSYKRLVPGYEAPCYVAWSAQNRSPLVRIPASRGISTRVEVRSVDPAANPYLVMATLLAAGLDGIKNKLTPPAAVDRNIYVMTKEEREEAGIVDLPATLAQALVTLQSNEVISNALGDHLLEHFIEAKEIEWDIFRTQVHQWERDQYMSLY
>NZ_CP041979.1|WP_001102620.1|1667235_1667559_-|PadR-family-transcriptional-regulator
MNVQFKKGVLELCVLALVKRKDCYGYELVQQISNKFLISEGSVYPLLRRLTKEGYFQTYLKESTEGPPRKYYQLTEQGETQLNLLVTEWRDFAKGVQEIIEGVEWDE
>NZ_CP041979.1|WP_000032389.1|1666700_1667243_-|DUF1700-domain-containing-protein
MSKEQFLKELSSHLRKLPDEERKDILFDYEEHFQFGIEEEKTESEIIKGLGSPKVIAKELLAMYRFDEMKKDPSTSNVTRAVMAAIGLSLFNFIIVLGPLVAIIAFIFSFWVGGIASVVTPFFVIGKVFMGTFIWLDLFVSVTFVGVGLLLCIIAYYSTKWFKKLCVRYVIWNFKMIKGE
>NZ_CP041979.1|WP_049111954.1|1665893_1666700_-|DUF4097-family-beta-strand-repeat-protein
MMKKILLVAIACIIIGVIGISQTYEKAVQAAEEGNKEDKIKNETLKNIEVKLDVGDIVVQKSPDASFYVKQSGDARKQEIRITEDGDTLKIIGEREKDASFDFSFYDFRFQTSTLTLLVPERSYQDVKVNSSAGQIEISDVKSDRVSARTLTGEVDLKHVTAKNVEGSTKAGEVNFKKVIGKVTAKTTSGEINILDHDSKYNLEASSTAGDINITLSEKPKDAVITGQSAAGDVTIFNEENKDVTIGNGSKKISGKTAAGDVTIETRS
>NZ_CP041979.1|WP_000413738.1|1665188_1665809_+|transcriptional-repressor-LexA
MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDPTKPRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPITAVESVEEHFPLPASIVAGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVALTEDNEATVKRFYKEKDHFRLQPENSSLEPIILKQVSVIGKVIGVYRDLH
>NZ_CP041979.1|WP_000991471.1|1664390_1665047_-|recombinase-family-protein
MNAIIYARVSTTKEAQETSLLRQKDELLHLAERYQMNVTKVIEEQASGYTIERDGILEVLDTIRDEQIDVLLIQDETRLGRGNAKIALMHCLHKEGIKVYTHTHNGELQLSDSDSMVLDIIGIVEEYQRKIHNLKIKRGMQRAVEKGYRPENNLKNRHLSVGREKKEVPIEEIVRLRKSELTFEEIAATLRGFGHNVSKATVHRRYVEYTKQLLDKEE
>NZ_CP041979.1|WP_167309186.1|1676946_1677078_+|hypothetical-protein
MATGATGPQGVQGNTGATGATGPQGVQGPAGATGAYWTSGCSR
>NZ_CP041979.1|WP_000813896.1|1679185_1679410_-|RNA-chaperone-Hfq
MKQSINIQDQFLNQLRKENTFVTLYLLNGFQLRGLIKGFDNFTVLLETEGKQQLIYKHAISTFVPQKNVSIELE
>NZ_CP041979.1|WP_049112626.1|1679431_1680385_-|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MGEVQREKVAVIIGPTAVGKTKLSIDLAKALNGEIISGDSMQIYRTMDIGTAKVTKEEMDGIPHYMVDIKNPEESFSVAEFQERVRKHIREITERGKLPIIVGGTGLYIQSVLFDYQFTDDAGDAIYREQMEKLALEHGVEYVHKKLQEVDPESAERIHANNVRRVIRALEIFHTTGEKMSDQLEKQENELLYDVSLIGLTMDREMLYDRINLRVDIMMDQGLLEEVEGLYNRGIRDCQSIQAIGYKEIYDYFEDRVSLEEAVSQLKTNSRRYAKRQLTWFRNKMDVTWFDVTDGEKTSEILRYIEGKLQLKSNNSK
>NZ_CP041979.1|WP_000814415.1|1680566_1680812_+|hypothetical-protein
MKQSTINFSSLTKDLILATATKEHNCSQEELYFALNCLLRSFHSALQETTLHLENKDTEYIQNQFCSAYKIITGKTIYPFQ
>NZ_CP041979.1|WP_000734633.1|1680871_1681804_-|SH3-domain-containing-protein
MKKLLGIATAAVFGLGIFAGSAKAETIVTTDVLNVRENPTVESKLVGKMLSGNKLDVVNTENGWTKIKLNGQEAFVSAEFTKSTYYVTAGVLNVRAGANTDSEILGKLNKNDVIETTNQVQNEWLQFDYNGKTGYVHVPFLTGTAPVIEKKEVATKEEAPERVNTPVKSNKVVKSKESVKNVESSKPVAKQQSTTKQVAKSNETSAPTSGREITVEATAYTADPSENGSYGGRVLTAMGHDLTANPNMKVIAVDPKVIPLGSKVWVEGYGEAIAGDTGGAIKGNRIDVLVGSDGSANSWGRKSVKVKVIE
>NZ_CP041979.1|WP_049112629.1|1682151_1684008_-|PTS-transporter-subunit-EIIA
MKITELLKRDTVIMNLTASNKEAVIDELVEKLNGANRLNSKAEFKEAILKRESQSTTGIGEGIAIPHAKTKAVKQPAICFGRSVSGINYESLDGQPAHLFFMIAASEGANNTHLETLSRLSTLLMDEGFRKQLLETKDEEELLRLFDEKENEKEEEVEVAKPEGNEPYVLAVTACPTGIAHTYMAADSLKAKAEELGIAIKVETNGSTGIKNGLTKEDIERATAIIVAADKQVEMNRFAGKHVIQVPVADGIRKTEKLLNRAVKQDAPIFKGVKEDGKAENTEKENGLGIYKHLMNGVSNMLPFVVGGGILIALAFSFGGIKAEGPLAELFMSIGGGGTGAFLFLVPILAGFIASSIADRPGFMPGVVGGFLAAHANAGFLGGLIAGFLAGYVVLGLKKLFSGLPVQLEGIKPVLLYPVFGLLITGVVMQKVVIPPVVALNEMLTGWLNGLNGTNAILLGLILGAMMAIDMGGPINKAAFTFGIAAIEAKNFGVHSAVMAGGMVPPLAIALATTFFKSKFTEAERKSGLTNYIMGASFITEGAIPFAAADPVRVIVSCVVGSSIAGALSMLFQITLPAPHGGLFVIALVNKPVLYIFSILIGAVVSALMMGIWKKKVK
>NZ_CP041979.1|WP_000640847.1|1684021_1684933_-|1-phosphofructokinase
MIYTVTLNPSIDYVVQVNSLDLGAVNRAEKDMKFPGGKGINVSRVLHRLGVENVALGFTGGFTGRFIKDVLQTEGVITNFIQVSEDTRINVKIKGREETELNGQGPSVTKEQFEQLMKQIESMEQGDCVVLAGSVPASIPTTFYESIAAFGAEKGIRVVVDASGSALQHVVKNKPFLIKPNHHELGELFGVEISTVEDVLPYGRKLVEQGVEHVIVSMAGDGALLFTAEGIYEATIPKGVVINSVGAGDSLVAGFVGRYEQTKDIEKAFQYGVATGSATAFSADLCEKEKVEELLSQVIVTKR
>NZ_CP041979.1|WP_000957276.1|1684929_1685682_-|DeoR/GlpR-transcriptional-regulator
MLTPERHQMILQLVKEQKVVKLQQLVERTESSESTIRRDLAQLEKQRLLKRVHGGAAVLTGKGQEPTMVEKSSKNIQIKQQIAKYAANVVEQGDCIYLDAGSTTFEMIPFLINKDVTVVTNGLMHIEALVENNIRAYLLGGMMKSRTKALIGAMAQESMQKYRFDKCFLGANGVHEQLGFTTPDPEEALLKQMALTLANEGYFLIDESKFSEVAFAKIANVEEANIITNHLEIDLEKYKRQTNVIEADKQ
>NZ_CP041979.1|WP_001179079.1|1685840_1687004_-|iron-containing-alcohol-dehydrogenase
MQNFVFRNPTKLIFGKGQLEQLKTEIPQFGKKVLLVYGGGSIKRNGIYDNVISILKDINAEVFELTGVEPNPRVSTVKKGIQICKDNGVEFILAVGGGSVIDCTKAIAAGSKYDGDVWDIVTKKAFASEALPFGTVLTLAATGSEMNAGSVITNWETNEKYGWGSPVTFPQFSILDPVHTASVPRDQTIYGMVDIMSHVLEQYFHHGTNTELQDRYCESVLKTVIETAPKLLSDLESYEHRETILYCGTMALNGILAMGVKGDWATHNIEHAVSAVHDIPHGGGLAILFPNWMKHVVDENVSRFKQFAIRVFDVETDGKTDREIALEGIEALRQFWTSIEAPVTLSDYAIGENEIDVMADKAMAYGEFGNFKKLNKDDVLSIYKASL
>NZ_CP041979.1|WP_000228316.1|1687120_1687663_-|DUF420-domain-containing-protein
MVDQSTNQKSYAPIVITLSVIVNAIILFLFFGPVGYEGEVHFDVTILPMLNAIFNSFTFVFLLAALYSIIKKNVKMHRGFILAAFTTTLLFCVSYLSYHYLAPATHFGGEGFIKYVYFIILITHIILAAIIVPLALFALVFGFTNQLTRHRKIVRWTMPIWLYVSLSGVIVYLMISPYYQ

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Crispr_ID: NZ_CP041979_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041979_3

1676790-1676901

Orphan

Consensus_repeat	Method
ACTGGACCTCAAGGTTCAAGGTAACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041979_3

>merge|NZ_CP041979|3|1676790-1676901|CRISPRCasFinder
ACTGGACCTCAAGGTTCAAGGTAACACAGGGGCTACTGGCGCTACTGGACCTCAAGGCGTTCAAGGTAACACAGGTGCTAGCGCTACTGGACCTCAGGGTTCAAGGTAACAC

>NZ_CP041979|3|2|1676790-1676901|CRISPRCasFinder
ACTGGACCTCAAGGTTCAAGGTAACAC	AGGGGCTACTGGCGCTACTGGACCTCAAGGCGTTCAAGGTAACACAGGTGCTAGCGCT
ACTGGACCTCAGGGTTCAAGGTAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041979.1\|WP_000391386.1\|1671148_1672423_-\|GTPase-HflX	unknown	unknown	gnl\|CDD\|274455
NZ_CP041979.1\|WP_000734633.1\|1680871_1681804_-\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|226112
NZ_CP041979.1\|WP_001179079.1\|1685840_1687004_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341466
NZ_CP041979.1\|WP_000228316.1\|1687120_1687663_-\|DUF420-domain-containing-protein	unknown	unknown	gnl\|CDD\|225204
NZ_CP041979.1\|WP_000813896.1\|1679185_1679410_-\|RNA-chaperone-Hfq	unknown	unknown	gnl\|CDD\|179001
NZ_CP041979.1\|WP_167309186.1\|1676946_1677078_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041979.1\|WP_000656779.1\|1669319_1669709_-\|transcriptional-repressor-GlnR	unknown	unknown	gnl\|CDD\|133380
NZ_CP041979.1\|WP_001102620.1\|1667235_1667559_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP041979.1\|WP_000413738.1\|1665188_1665809_+\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP041979.1\|WP_000991471.1\|1664390_1665047_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP041979.1\|WP_000460299.1\|1669884_1671156_-\|methionine-gamma-lyase-family-protein	unknown	unknown	gnl\|CDD\|311036
NZ_CP041979.1\|WP_000032389.1\|1666700_1667243_-\|DUF1700-domain-containing-protein	unknown	unknown	gnl\|CDD\|285278
NZ_CP041979.1\|WP_000640847.1\|1684021_1684933_-\|1-phosphofructokinase	unknown	unknown	gnl\|CDD\|238570
NZ_CP041979.1\|WP_000814415.1\|1680566_1680812_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041979.1\|WP_000957276.1\|1684929_1685682_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP041979.1\|WP_000312265.1\|1672515_1673139_+\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NZ_CP041979.1\|WP_049112629.1\|1682151_1684008_-\|PTS-transporter-subunit-EIIA	unknown	unknown	gnl\|CDD\|236740
NZ_CP041979.1\|WP_000135330.1\|1667936_1669271_-\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|273198
NZ_CP041979.1\|WP_049111954.1\|1665893_1666700_-\|DUF4097-family-beta-strand-repeat-protein	unknown	unknown	gnl\|CDD\|372574
NZ_CP041979.1\|WP_049112626.1\|1679431_1680385_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626

Protein	Function_ID	Function_description	E-value
NZ_CP041979.1\|WP_000391386.1\|1671148_1672423_-\|GTPase-HflX	gnl\|CDD\|274455	TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). [Unknown function, General].	0
NZ_CP041979.1\|WP_000734633.1\|1680871_1681804_-\|SH3-domain-containing-protein	gnl\|CDD\|226112	COG3584, COG3584, Uncharacterized protein conserved in bacteria [Function unknown].	5.33765e-36
NZ_CP041979.1\|WP_001179079.1\|1685840_1687004_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341466	cd08187, BDH, Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction is 50-fold lower than that in the forward direction. The NADH-BDH has higher activity with longer chained aldehydes and is inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases. This family also includes E. coli YqhD enzyme, an NADP-dependent dehydrogenase whose activity measurements with several alcohols demonstrate preference for alcohols longer than C3. The active site of YqhD contains a Zn metal, and a modified NADPH cofactor bearing OH groups on the saturated C5 and C6 atoms, possibly due to oxygen stress on the enzyme, which would functionally work under anaerobic conditions.	0
NZ_CP041979.1\|WP_000228316.1\|1687120_1687663_-\|DUF420-domain-containing-protein	gnl\|CDD\|225204	COG2322, COG2322, Predicted membrane protein [Function unknown].	1.75148e-56
NZ_CP041979.1\|WP_000813896.1\|1679185_1679410_-\|RNA-chaperone-Hfq	gnl\|CDD\|179001	PRK00395, hfq, RNA-binding protein Hfq; Provisional.	3.4363e-41
NZ_CP041979.1\|WP_000656779.1\|1669319_1669709_-\|transcriptional-repressor-GlnR	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	6.89797e-24
NZ_CP041979.1\|WP_001102620.1\|1667235_1667559_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.56565e-24
NZ_CP041979.1\|WP_000413738.1\|1665188_1665809_+\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	9.98492e-112
NZ_CP041979.1\|WP_000991471.1\|1664390_1665047_-\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	7.33037e-31
NZ_CP041979.1\|WP_000460299.1\|1669884_1671156_-\|methionine-gamma-lyase-family-protein	gnl\|CDD\|311036	pfam06838, Met_gamma_lyase, Methionine gamma-lyase. This is a putative pyridoxal 5'-phosphate-dependent methionine gamma-lyase enzyme involved in methionine catabolism.	0
NZ_CP041979.1\|WP_000032389.1\|1666700_1667243_-\|DUF1700-domain-containing-protein	gnl\|CDD\|285278	pfam08006, DUF1700, Protein of unknown function (DUF1700). This family contains many hypothetical bacterial proteins and putative membrane proteins.	2.81152e-83
NZ_CP041979.1\|WP_000640847.1\|1684021_1684933_-\|1-phosphofructokinase	gnl\|CDD\|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	1.49313e-142
NZ_CP041979.1\|WP_000957276.1\|1684929_1685682_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	9.45205e-82
NZ_CP041979.1\|WP_000312265.1\|1672515_1673139_+\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	7.95315e-60
NZ_CP041979.1\|WP_049112629.1\|1682151_1684008_-\|PTS-transporter-subunit-EIIA	gnl\|CDD\|236740	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional.	6.42697e-143
NZ_CP041979.1\|WP_000135330.1\|1667936_1669271_-\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|273198	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation. [Amino acid biosynthesis, Glutamate family].	0
NZ_CP041979.1\|WP_049111954.1\|1665893_1666700_-\|DUF4097-family-beta-strand-repeat-protein	gnl\|CDD\|372574	pfam13349, DUF4097, Putative adhesin. This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.	2.4553e-17
NZ_CP041979.1\|WP_049112626.1\|1679431_1680385_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	7.8053e-167

>NZ_CP041979.1|WP_000312265.1|1672515_1673139_+|trimeric-intracellular-cation-channel-family-protein
MAWEIFSIIGTIAFALSGAIVAMEEDYDIFGVYILGMATAFGGGALRNLLIGYPIVAFWQQDMLFQIALLSMTIIFLFPNKLIRHWKKWENITDAIGLSAFAVQGALYAQKLNLPISATIVAAVLTGIGGGIIRDLLARRKPLVLRADVYAFWTILAGFLIGAQIIVSDWALYTLFILIVCFRMVSIHYKWHLPHRRIDTNERSMHK
>NZ_CP041979.1|WP_000391386.1|1671148_1672423_-|GTPase-HflX
MEEKEKVILVGCQLPQDDDEKFMHSMKELASLAKTARAELLVSTTQKRPKFHPATYIGKGKLEELAMLTEELEPDVIVFNNELTPSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQGLSLSRLGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQVSLIGYTNAGKSTLFNRLTEADTFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDLPTSLIAAFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSELEINHIPIITLYNKKDELHQNFIPFPKSDFLMTSAFEENDLLHIKEAIETKMKKEMNRYQVEIPPSEGKLLTLLKTETLLTKMEFLEDKFVYDCAGYIFAHSSLNVQLKRFLVEEGENKNV
>NZ_CP041979.1|WP_000460299.1|1669884_1671156_-|methionine-gamma-lyase-family-protein
MFDRLKNGEKIAPIVKEVESQITEVHKRADEVIESNQFRVLESFRKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEEGLVDFRAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKSDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDKDRMIAFCQAIQYASPINSHFTPYANYMPGYEDDVIMAAGTFIQGASIELSADGPIRPPYVAYVQGGLTYSHVKIAICSAIDALIEKELLTIS
>NZ_CP041979.1|WP_000656779.1|1669319_1669709_-|transcriptional-repressor-GlnR
MKEDRRSAPLFPIGIVMDLTQLSARQIRYYEEHNLISPTRTKGNRRLFSFNDVDKLLEIKDLLDQGLNMAGIKQVLLMKENQTEAVKVKEETKEISKTELRKILRDELQHTGRFNRTSLRQGDISRFFH
>NZ_CP041979.1|WP_000135330.1|1667936_1669271_-|type-I-glutamate--ammonia-ligase
MARYTKEDIFRLAKEENVKYIRLQFTDLLGVIKNVEIPVSQLTKALDNKMMFDGSSIEGFVRIEESDMYLYPDLDTWVIFPWTAEKGKVARLICDIYNADGTPFEGDPRNNLKRVLKEMEALGFSDFNLGPEPEFFLFKVDEKGNPTLELNDNGGYFDLAPMDLGENCRRDIVLELEEMGFEIEASHHEVAPGQHEIDFKYANAIRSCDDIQTFKLVVKTIARKHGLHATFMPKPLYGVNGSGMHCNLSLFKNGENVFYDQNGDLQLSDDARHFIAGILKHAPAFTAVANPTVNSYKRLVPGYEAPCYVAWSAQNRSPLVRIPASRGISTRVEVRSVDPAANPYLVMATLLAAGLDGIKNKLTPPAAVDRNIYVMTKEEREEAGIVDLPATLAQALVTLQSNEVISNALGDHLLEHFIEAKEIEWDIFRTQVHQWERDQYMSLY
>NZ_CP041979.1|WP_001102620.1|1667235_1667559_-|PadR-family-transcriptional-regulator
MNVQFKKGVLELCVLALVKRKDCYGYELVQQISNKFLISEGSVYPLLRRLTKEGYFQTYLKESTEGPPRKYYQLTEQGETQLNLLVTEWRDFAKGVQEIIEGVEWDE
>NZ_CP041979.1|WP_000032389.1|1666700_1667243_-|DUF1700-domain-containing-protein
MSKEQFLKELSSHLRKLPDEERKDILFDYEEHFQFGIEEEKTESEIIKGLGSPKVIAKELLAMYRFDEMKKDPSTSNVTRAVMAAIGLSLFNFIIVLGPLVAIIAFIFSFWVGGIASVVTPFFVIGKVFMGTFIWLDLFVSVTFVGVGLLLCIIAYYSTKWFKKLCVRYVIWNFKMIKGE
>NZ_CP041979.1|WP_049111954.1|1665893_1666700_-|DUF4097-family-beta-strand-repeat-protein
MMKKILLVAIACIIIGVIGISQTYEKAVQAAEEGNKEDKIKNETLKNIEVKLDVGDIVVQKSPDASFYVKQSGDARKQEIRITEDGDTLKIIGEREKDASFDFSFYDFRFQTSTLTLLVPERSYQDVKVNSSAGQIEISDVKSDRVSARTLTGEVDLKHVTAKNVEGSTKAGEVNFKKVIGKVTAKTTSGEINILDHDSKYNLEASSTAGDINITLSEKPKDAVITGQSAAGDVTIFNEENKDVTIGNGSKKISGKTAAGDVTIETRS
>NZ_CP041979.1|WP_000413738.1|1665188_1665809_+|transcriptional-repressor-LexA
MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDPTKPRAIEILGEDRMDTETQSVIQVPIVGKVTAGLPITAVESVEEHFPLPASIVAGADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVALTEDNEATVKRFYKEKDHFRLQPENSSLEPIILKQVSVIGKVIGVYRDLH
>NZ_CP041979.1|WP_000991471.1|1664390_1665047_-|recombinase-family-protein
MNAIIYARVSTTKEAQETSLLRQKDELLHLAERYQMNVTKVIEEQASGYTIERDGILEVLDTIRDEQIDVLLIQDETRLGRGNAKIALMHCLHKEGIKVYTHTHNGELQLSDSDSMVLDIIGIVEEYQRKIHNLKIKRGMQRAVEKGYRPENNLKNRHLSVGREKKEVPIEEIVRLRKSELTFEEIAATLRGFGHNVSKATVHRRYVEYTKQLLDKEE
>NZ_CP041979.1|WP_167309186.1|1676946_1677078_+|hypothetical-protein
MATGATGPQGVQGNTGATGATGPQGVQGPAGATGAYWTSGCSR
>NZ_CP041979.1|WP_000813896.1|1679185_1679410_-|RNA-chaperone-Hfq
MKQSINIQDQFLNQLRKENTFVTLYLLNGFQLRGLIKGFDNFTVLLETEGKQQLIYKHAISTFVPQKNVSIELE
>NZ_CP041979.1|WP_049112626.1|1679431_1680385_-|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MGEVQREKVAVIIGPTAVGKTKLSIDLAKALNGEIISGDSMQIYRTMDIGTAKVTKEEMDGIPHYMVDIKNPEESFSVAEFQERVRKHIREITERGKLPIIVGGTGLYIQSVLFDYQFTDDAGDAIYREQMEKLALEHGVEYVHKKLQEVDPESAERIHANNVRRVIRALEIFHTTGEKMSDQLEKQENELLYDVSLIGLTMDREMLYDRINLRVDIMMDQGLLEEVEGLYNRGIRDCQSIQAIGYKEIYDYFEDRVSLEEAVSQLKTNSRRYAKRQLTWFRNKMDVTWFDVTDGEKTSEILRYIEGKLQLKSNNSK
>NZ_CP041979.1|WP_000814415.1|1680566_1680812_+|hypothetical-protein
MKQSTINFSSLTKDLILATATKEHNCSQEELYFALNCLLRSFHSALQETTLHLENKDTEYIQNQFCSAYKIITGKTIYPFQ
>NZ_CP041979.1|WP_000734633.1|1680871_1681804_-|SH3-domain-containing-protein
MKKLLGIATAAVFGLGIFAGSAKAETIVTTDVLNVRENPTVESKLVGKMLSGNKLDVVNTENGWTKIKLNGQEAFVSAEFTKSTYYVTAGVLNVRAGANTDSEILGKLNKNDVIETTNQVQNEWLQFDYNGKTGYVHVPFLTGTAPVIEKKEVATKEEAPERVNTPVKSNKVVKSKESVKNVESSKPVAKQQSTTKQVAKSNETSAPTSGREITVEATAYTADPSENGSYGGRVLTAMGHDLTANPNMKVIAVDPKVIPLGSKVWVEGYGEAIAGDTGGAIKGNRIDVLVGSDGSANSWGRKSVKVKVIE
>NZ_CP041979.1|WP_049112629.1|1682151_1684008_-|PTS-transporter-subunit-EIIA
MKITELLKRDTVIMNLTASNKEAVIDELVEKLNGANRLNSKAEFKEAILKRESQSTTGIGEGIAIPHAKTKAVKQPAICFGRSVSGINYESLDGQPAHLFFMIAASEGANNTHLETLSRLSTLLMDEGFRKQLLETKDEEELLRLFDEKENEKEEEVEVAKPEGNEPYVLAVTACPTGIAHTYMAADSLKAKAEELGIAIKVETNGSTGIKNGLTKEDIERATAIIVAADKQVEMNRFAGKHVIQVPVADGIRKTEKLLNRAVKQDAPIFKGVKEDGKAENTEKENGLGIYKHLMNGVSNMLPFVVGGGILIALAFSFGGIKAEGPLAELFMSIGGGGTGAFLFLVPILAGFIASSIADRPGFMPGVVGGFLAAHANAGFLGGLIAGFLAGYVVLGLKKLFSGLPVQLEGIKPVLLYPVFGLLITGVVMQKVVIPPVVALNEMLTGWLNGLNGTNAILLGLILGAMMAIDMGGPINKAAFTFGIAAIEAKNFGVHSAVMAGGMVPPLAIALATTFFKSKFTEAERKSGLTNYIMGASFITEGAIPFAAADPVRVIVSCVVGSSIAGALSMLFQITLPAPHGGLFVIALVNKPVLYIFSILIGAVVSALMMGIWKKKVK
>NZ_CP041979.1|WP_000640847.1|1684021_1684933_-|1-phosphofructokinase
MIYTVTLNPSIDYVVQVNSLDLGAVNRAEKDMKFPGGKGINVSRVLHRLGVENVALGFTGGFTGRFIKDVLQTEGVITNFIQVSEDTRINVKIKGREETELNGQGPSVTKEQFEQLMKQIESMEQGDCVVLAGSVPASIPTTFYESIAAFGAEKGIRVVVDASGSALQHVVKNKPFLIKPNHHELGELFGVEISTVEDVLPYGRKLVEQGVEHVIVSMAGDGALLFTAEGIYEATIPKGVVINSVGAGDSLVAGFVGRYEQTKDIEKAFQYGVATGSATAFSADLCEKEKVEELLSQVIVTKR
>NZ_CP041979.1|WP_000957276.1|1684929_1685682_-|DeoR/GlpR-transcriptional-regulator
MLTPERHQMILQLVKEQKVVKLQQLVERTESSESTIRRDLAQLEKQRLLKRVHGGAAVLTGKGQEPTMVEKSSKNIQIKQQIAKYAANVVEQGDCIYLDAGSTTFEMIPFLINKDVTVVTNGLMHIEALVENNIRAYLLGGMMKSRTKALIGAMAQESMQKYRFDKCFLGANGVHEQLGFTTPDPEEALLKQMALTLANEGYFLIDESKFSEVAFAKIANVEEANIITNHLEIDLEKYKRQTNVIEADKQ
>NZ_CP041979.1|WP_001179079.1|1685840_1687004_-|iron-containing-alcohol-dehydrogenase
MQNFVFRNPTKLIFGKGQLEQLKTEIPQFGKKVLLVYGGGSIKRNGIYDNVISILKDINAEVFELTGVEPNPRVSTVKKGIQICKDNGVEFILAVGGGSVIDCTKAIAAGSKYDGDVWDIVTKKAFASEALPFGTVLTLAATGSEMNAGSVITNWETNEKYGWGSPVTFPQFSILDPVHTASVPRDQTIYGMVDIMSHVLEQYFHHGTNTELQDRYCESVLKTVIETAPKLLSDLESYEHRETILYCGTMALNGILAMGVKGDWATHNIEHAVSAVHDIPHGGGLAILFPNWMKHVVDENVSRFKQFAIRVFDVETDGKTDREIALEGIEALRQFWTSIEAPVTLSDYAIGENEIDVMADKAMAYGEFGNFKKLNKDDVLSIYKASL
>NZ_CP041979.1|WP_000228316.1|1687120_1687663_-|DUF420-domain-containing-protein
MVDQSTNQKSYAPIVITLSVIVNAIILFLFFGPVGYEGEVHFDVTILPMLNAIFNSFTFVFLLAALYSIIKKNVKMHRGFILAAFTTTLLFCVSYLSYHYLAPATHFGGEGFIKYVYFIILITHIILAAIIVPLALFALVFGFTNQLTRHRKIVRWTMPIWLYVSLSGVIVYLMISPYYQ

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Crispr_ID: NZ_CP041979_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041979_4

2085081-2085264

Orphan

Consensus_repeat	Method
CTTCATCTGTTGGTGGTGTCGTTGGATTTTCTCCATTATTTCCTTCACCTGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041979_4

>merge|NZ_CP041979|4|2085081-2085264|CRISPRCasFinder
CTTCATCTGTTGGTGGTGTCGTTGGATTTTCTCCATTATTTCCTTCACCTGTTGGTGGTGTCGTTGGATTTCTCTCCACCAGTTTCTCTTCACCTGTTGGTGGTGTCGTTGGATTTTCTCCATTATTTCCTTCACCTGTTGGCGGTGTTGTTGGATTCTCTCCACCAGTTTCTTTATCATCATC

>NZ_CP041979|4|3|2085081-2085264|CRISPRCasFinder
CTTCATCTGTTGGTGGTGTCGTTGGATTTTCTCCATTATTTCCTTCACCTGTTGG	TGGTGTCGTTGGATTTCTCTCCACCAGTTTCTCTTCACCTGTTGGTGGTGTCGTTGGATTTTCTCCATTATTTC
CTTCACCTGTTGGCGGTGTTGTTGGATTCTCTCCACCAGTTTCTTTATCATCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041979.1\|WP_000253748.1\|2083463_2084837_+\|Na+/H+-antiporter-NhaC	unknown	unknown	gnl\|CDD\|188097
NZ_CP041979.1\|WP_049112185.1\|2092024_2092792_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
NZ_CP041979.1\|WP_000815866.1\|2076563_2077562_-\|biotin-synthase	unknown	unknown	gnl\|CDD\|235755
NZ_CP041979.1\|WP_001003210.1\|2095299_2095485_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372939
NZ_CP041979.1\|WP_000861216.1\|2094038_2095076_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NZ_CP041979.1\|WP_000549778.1\|2076062_2076383_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041979.1\|WP_000445817.1\|2088440_2088887_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP041979.1\|WP_000144317.1\|2080956_2082345_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|180746
NZ_CP041979.1\|WP_049113765.1\|2080228_2080957_-\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_CP041979.1\|WP_000108855.1\|2089903_2090854_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234835
NZ_CP041979.1\|WP_049113761.1\|2078338_2079079_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|273783
NZ_CP041979.1\|WP_014893525.1\|2089167_2089728_-\|DUF2062-domain-containing-protein	unknown	unknown	gnl\|CDD\|378263
NZ_CP041979.1\|WP_049113759.1\|2077563_2078373_-\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|273953
NZ_CP041979.1\|WP_000598419.1\|2092803_2094027_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	unknown	unknown	gnl\|CDD\|235441
NZ_CP041979.1\|WP_000726888.1\|2082467_2082824_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041979.1\|WP_049113763.1\|2079075_2080263_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NZ_CP041979.1\|WP_000755835.1\|2087588_2088368_+\|lipase/acylhydrolase	unknown	unknown	gnl\|CDD\|239947
NZ_CP041979.1\|WP_000291952.1\|2088911_2089109_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041979.1\|WP_000230889.1\|2075570_2076032_+\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP041979.1\|WP_000200519.1\|2090867_2092028_-\|acetylornithine-transaminase	unknown	unknown	gnl\|CDD\|179505

Protein	Function_ID	Function_description	E-value
NZ_CP041979.1\|WP_000253748.1\|2083463_2084837_+\|Na+/H+-antiporter-NhaC	gnl\|CDD\|188097	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. Intriguingly, archaeal homolog ArcD (just outside boundaries of family) has been identified as an arginine/ornithine antiporter. [Transport and binding proteins, Cations and iron carrying compounds].	1.13959e-118
NZ_CP041979.1\|WP_000815866.1\|2076563_2077562_-\|biotin-synthase	gnl\|CDD\|235755	PRK06256, PRK06256, biotin synthase; Validated.	0
NZ_CP041979.1\|WP_001003210.1\|2095299_2095485_+\|hypothetical-protein	gnl\|CDD\|372939	pfam14164, YqzH, YqzH-like protein. The YqzH-like protein family includes the B. subtilis YqzH protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length.	2.3972e-19
NZ_CP041979.1\|WP_000861216.1\|2094038_2095076_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
NZ_CP041979.1\|WP_000445817.1\|2088440_2088887_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	7.00986e-18
NZ_CP041979.1\|WP_000144317.1\|2080956_2082345_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|180746	PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional.	0
NZ_CP041979.1\|WP_049113765.1\|2080228_2080957_-\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	4.33917e-94
NZ_CP041979.1\|WP_000108855.1\|2089903_2090854_-\|ornithine-carbamoyltransferase	gnl\|CDD\|234835	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.	0
NZ_CP041979.1\|WP_049113761.1\|2078338_2079079_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|273783	TIGR01738, Pimeloyl-_methyl_ester_esterase, pimelyl-[acyl-carrier protein] methyl ester esterase. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam00561). Members of this family are restricted to the Proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	7.0029e-22
NZ_CP041979.1\|WP_049113759.1\|2077563_2078373_-\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|273953	TIGR02072, Malonyl-_O-methyltransferase, malonyl-acyl carrier protein O-methyltransferase BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, carries out an enzymatic step prior to the formation of pimeloyl-CoA, namely O-methylation of the malonyl group preferentially while on acyl carrier protein. The enzyme is recognizable as a methyltransferase by homology. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	1.09796e-83
NZ_CP041979.1\|WP_000598419.1\|2092803_2094027_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	gnl\|CDD\|235441	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ.	0
NZ_CP041979.1\|WP_014893525.1\|2089167_2089728_-\|DUF2062-domain-containing-protein	gnl\|CDD\|378263	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062). This domain, found in various prokaryotic proteins, has no known function.	2.1423e-19
NZ_CP041979.1\|WP_049113763.1\|2079075_2080263_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NZ_CP041979.1\|WP_000755835.1\|2087588_2088368_+\|lipase/acylhydrolase	gnl\|CDD\|239947	cd04506, SGNH_hydrolase_YpmR_like, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.	9.38407e-41
NZ_CP041979.1\|WP_049112185.1\|2092024_2092792_-\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	7.10702e-109
NZ_CP041979.1\|WP_000230889.1\|2075570_2076032_+\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	5.7108e-89
NZ_CP041979.1\|WP_000200519.1\|2090867_2092028_-\|acetylornithine-transaminase	gnl\|CDD\|179505	PRK02936, argD, acetylornithine transaminase.	0

>NZ_CP041979.1|WP_000253748.1|2083463_2084837_+|Na+/H+-antiporter-NhaC
MVSKIESVLLTVFIFFCIGFSVIQLEVSPHIPILFGIVFLLAFGFMKKIDWSTMEKGMISSISAGIPSIFIFLLVGVLISVWIAAGTIPTLMVYGFQLVSPKIFIPTVFVVCAIVGTSIGSAFTTAATVGLAFMGMGSALGYDPALIAGAIISGAFFGDKMSPLSDTTNLAPAVTGVDLFEHIRNMLWTTVPAFIIAFIAFFILGSGTSGDVDFTNFISTLEKNATISIFTLIPILLLFLFAFKKVPAVPTLLAGIIVGIIILFIFKPSTSLTDLMKIMQDGYVSKTGMKDIDSLLSRGGLQSMMMSIALIFLALCMGGLLQGMGIITQLMNIISSFVKTSTRLIISTASTAIGVNFLLGEQYLSIVLTGQAFANKYDEVGLERRNLSRVLEDAGTVINPLVPWGVSGVFLSNVLGVPTFDYVPFAIFCLACPVVTIIVGFTGFGLSWKKEKAVTLS
>NZ_CP041979.1|WP_000726888.1|2082467_2082824_-|hypothetical-protein
MKKKIILFTTLLVIGGSAGIYTAFAAESEQAKQKQIQQLEVKKAKEAEEKKSMEKAADKLGVSTEGKTKEEVAKEVNKARFEQHHDLLIEHAKQLGIDTEGKKDEEIILEIGKIQHGK
>NZ_CP041979.1|WP_000144317.1|2080956_2082345_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTFSKSTTDKPSYTYEELSEKNKAYVWHPFTQMKDYLEEDPVIIERGEGRKLYDVNGNEYWDGVSSIWLNVHGHQVPELDEAIREQLNKISHSTMLGLANVPSILLAEKIIEVVPEGLKKVFYSDSGSSAVEIAIKMAFQYWQHKGKPKKQRFVTLKEAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEEMEELLKDKHEEIAAIIVEPLMQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDILTAGKGLTGGYLPVAITVTTDEIYNAFLGGYEEQKTFFHGHSYTGNPLGCAVAIANLELYEKTNLIEEVARKTEYVATQLEDLFAYKHVGDIRQCGLMVGIELVKNKETKEAFEWTERVGVQVCKRSRELGMILRPLGNTIVFMPPLASTIDEIDDMLRILYQAISDVTEGE
>NZ_CP041979.1|WP_049113765.1|2080228_2080957_-|ATP-dependent-dethiobiotin-synthetase-BioD
MSGFFITATDTEVGKTVVAGALAGVFRELGYNVGVYKPLQSGHVASNPEGDAARLKALSGVPTKEEEICPYSIEEPLAPRLAMKRAGRTVTLKDIIHHYNERLKDFNSLLVEGAGGLAVPYTEDALVIDFAKELQLPLIVVARPTLGTVNHTVLTIAYAKAYGLTVAGVILSGCKECEMERVQENKEMIEELSGVPVLGLLPFFAGEFTKEEVLESAKEYIMISKLEELIRNESNVAHTSSI
>NZ_CP041979.1|WP_049113763.1|2079075_2080263_-|8-amino-7-oxononanoate-synthase
MNQTWRTHLQSKLQQLHEREQYRNLHVTEQAEETWLIRNEKRMLNLASNNYLGLAGDERLKEAAIACTRKYGTGATASRLVVGNYSLYEEVERSICDWKGTEKALVVNSGYTANIGVISSLVSRHDIVFSDKLNHASIVDGIILSGAEHKRYRHNDLDHLEKLLKTASPEQRKLIVTDTVFSMDGDTAYVRELVELKEKCGAILIVDEAHASGIYGIGGAGLSHIEENLARKIDIHMGTFSKALGCYGAYLTGDAIYIEYLHNMMRSFIFTTALPPGTLGAVQKAIEIVKEDNERRERLIENGAYFRNHLREAGFDIGNSSTHIVPIVVGSNETALRFSKRLQQVGIAAIAIRPPTVPVNSSRVRFAVTSQHTIADLQWAIHHIIRIGKEEGFFV
>NZ_CP041979.1|WP_049113761.1|2078338_2079079_-|alpha/beta-fold-hydrolase
MKELKIIFIPGWGMEEGVWTLVLSYFKEYSVQCINWRNVKEQSEFAGRVIDVAKDENVILVGWSLGALAAVQAHKKIQTKGIVLIGGTAKFTNSSDYMSGWNALHVERLKKNVARKKEDTLKRFYENMFTKDELKENTSFEEIALNFKGDSIQSLQLGLDYLIETDMRNELIDVKVPLLLLHGEQDVICPLSAAHSMTENANAKLKVVSEAGHALCVTNFEYCANEIIQFVEGIRHDQQNVTTKTI
>NZ_CP041979.1|WP_049113759.1|2077563_2078373_-|malonyl-ACP-O-methyltransferase-BioC
MINKTLLQKRFNVAAVSYDQYANVQKKMAHSLLSTLNRRYSANSSIRILELGCGTGYVTEQLSNLFPKAKITAIDFAESMIAVARTRQNVNNVTFYCEDIERLRLEETYDVIISNATFQWLNDLKQVITNLFRHLSIEGILLFSTFGQETFQELHASFQRAKEEKNIQNETSIGQRFYSKNQLRHICEIETGDVHVSETCYIERFTEVREFLHSIRKVGATNSNEESYCQSPSLFRAMLRIYERDFTGNEGIMATYHALFVHITKEGKR
>NZ_CP041979.1|WP_000815866.1|2076563_2077562_-|biotin-synthase
MKQVQTKRDWKKLAYDVVEEKVITKEDAIAILEADDTEILEIMNAAYIIRHHHFGKKVKLNMIINTKSGLCPEDCGYCSQSIISEAPIDKYAWLTQEKIVEGAHEAIRRKAGTYCIVASGRRPTDKEVNHVIGAVKEIRETTDLKICCCLGFLNEDQAGRLAEAGVHRYNHNLNTHANNYESICSTHTYDDRVDTVQKAKQAGISPCSGAIFGMGETIEERAEIAFELQRIDADSIPCNFLVAVKGTPLEGQKELTPVECLKVLAMMRFVNPTKEIRISGGREINLRSVQPIGLFAANSIFVGDYLTTAGQEPTADWGMIEDLGFEIEECAL
>NZ_CP041979.1|WP_000549778.1|2076062_2076383_-|hypothetical-protein
MHKYILAIMTCLILLKAISADPVKAAENPEQKEMQQRIEQHFRTKAEHFGLKTEGKDLKEVRKEITIIEEAKKRENVWRTAQTLRIQTEGKTMDELIKDVRKKVKK
>NZ_CP041979.1|WP_000230889.1|2075570_2076032_+|6,7-dimethyl-8-ribityllumazine-synthase
MVFEGHLVGTGLKVGVVVGRFNEFITSKLLGGALDGLKRHGVEEADIDVAWVPGAFEIPLIAKKMANSGKYDAVITLGTVIRGATTHYDYVCNEVAKGVASLSLQTDIPVIFGVLTTETIEQAIERAGTKAGNKGYESAVAAIEMAHLSKQWA
>NZ_CP041979.1|WP_000755835.1|2087588_2088368_+|lipase/acylhydrolase
MKKVILTIVCLLLLIISYSYFEKNDETKQNEPEEKTEKTSTPSWIDKQTNDSFYHLVLGDSLAKGYGSTQGGFAELASKQIEAQIHKPITVENLGINGLTTDRLAKKVDSEDVKQKIRAANIITINIGGNNLFRLNRDVGVIDGIKMLNKEKAHFEADVKNIVKTVRDQNPDALLILSELYNPLQLDDSIASYADMFLDGWNESVYSIAKANQPSIVLPIRKLISNDKKELLFDQVHPNDKGYTIIADSFTKKVLAYKY
>NZ_CP041979.1|WP_000445817.1|2088440_2088887_+|MarR-family-transcriptional-regulator
MESREWERIVDHLLSLVPLFYRKFMLPGEFSSQRHMPPSHTQVLLLLHENGTLAVSEIGKRLAISRPNMTPLLNKLIQEELIERHYSEKDRRVILISLTAEGKLLVNQYQQFILDKLKENFQTLSEEEREKLIHSLQTIQNLILKTNA
>NZ_CP041979.1|WP_000291952.1|2088911_2089109_-|hypothetical-protein
MYYYYVPQVYPYVNYYPVYDTSRQYELYRQQQLPQIPSQQPTQDQKPYLTTWPYSNVYYGNYYES
>NZ_CP041979.1|WP_014893525.1|2089167_2089728_-|DUF2062-domain-containing-protein
MMNLKTTKKTYSFFQRMWRILKFQYYKLLRSPEGAKKVSLGFAIGFGLEMLVIYTASLVYLIFYPIVRLAKGSFPAAVIGNIIGKISFLPVVLFPLAYALGKMIYPFHVQKIHHEPFTISDLFSSHIFTILKSLLQSEVYVLIGMTILGVVFGVVSYFVVHYLYEKNRKLRLKNRKKRVREPLMQI
>NZ_CP041979.1|WP_000108855.1|2089903_2090854_-|ornithine-carbamoyltransferase
MSTVQVPKLNTKDLLTLEELTKEEIISLIEFAIYLKKNKQEPLLQGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLSGKEMQMGRGETVPDTAKVLSQYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEEKNTFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPIGYEPNEKIVKKALAIAEETGAKIEILHNPELAVSEADFIYTDVWMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYRFLHCLPAHREEEVTGEIIDGPKSIVFEQAGNRLHAQKALLVSLFKNVEELS
>NZ_CP041979.1|WP_000200519.1|2090867_2092028_-|acetylornithine-transaminase
MTSHLFQTYGRRKSEFVKGKGTKVIDHNGKQYLDFTSGIGVCNLGHCHPTVMKAVQEQLHEIWHISNLFTNSLQEEVASLLTENIALDYVFFCNSGAEANEAALKLARKHTGKSLVVTCKQSFHGRTFGTMSATGQNKVKEGFGPLLPSFLHTPFNDIKALEEVMNEEVAAVMIEVVQGEGGVILADLSFLKAIEALCKKFGSLFIIDEVQTGIGRTGTLFAYEQMGIKPDIVTVAKALGNGIPVGAMIGRKELGTSFTAGSHGSTFGGNYIAMAAAKEVLQITKKPSFLKEVKEKGEYVLQKLQEELQHVECIQNIRGKGLMVGIECTHEVASFIEQLEKEGLLVLQAGPNVIRLLPPLIVTNEELEQAVYMIKKVVCTKNVSII
>NZ_CP041979.1|WP_049112185.1|2092024_2092792_-|acetylglutamate-kinase
MSDYIVVKCGGSMLDQLHDVFFDCIKKLQQKYKVVIVHGGGPEIDAKLKDCNINVEKKDGLRVTPKEVMDIVQMVLCGSTNKKLVMNLQKHNLHAVGCSGCDGKLLQVQPVSEEIGYVGEVSYVETALLKGLINMNYIPVIAPVGINDNEIYNINADTAAAGIAAALSAKELIFITDVDGVLHEGKLLKKTDEFEIVNLIEKGVITGGMIPKVQAALASLKMGVQKVSIVNGTKDFTEVTGECIGTTVTRGVSIA
>NZ_CP041979.1|WP_000598419.1|2092803_2094027_-|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ
MIKVASITKVENGSIVTPKGFSAIGNAIGLKKEKKDLGAIVCDTPASCAAVYTTNQIQAAPLQVTKDSIATEGKLQAIIVNSGNANACTGMKGLQDAYEMRALGAEHFGLKENYVAVASTGVIGVPLPMDIIRNGIATLIPAKEEREAHSFSEAILTTDLITKETCYEMVIDGKKVLIAGVAKGSGMIHPNMATMLSFITTDAHIEHDVLQTALSQITNHTFNQITVDGDTSTNDMVIVMASGLSETKPINMEHADWETFVFALQKVCEDLAKKIAQDGEGATKLIEVNVLGARTNEEAKKIAKQIVGSSLVKTAIHGEDPNWGRIISSIGQSEVAINPNTIDITLQSIAVLKNSEPQMFSEEEMEMRLQEHEIMIDVYLHLGEETGSAWGCDLSYEYVKINACYRT
>NZ_CP041979.1|WP_000861216.1|2094038_2095076_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MKVAIIGATGYGGIELIRLLEQHPYFSIASLHSFSQVGECITNVYPHFQNVLVHTLQEIDAEEIVKEAEIVFLATPAGVSAELTPKLLAVGLKVIDLSGDFRMKDPFIYEQWYKRAAAKEEILSKAVYGLSEWKRSEVQNANLIANPGCFATAALLATLPLVRSGIIEEDSIIIDAKSGVSGAGKTPTTMTHFPELYDNLRIYKVNEHQHVPEIEQMLAEWNRETKPITFSTHLIPISRGIMVTLYAKVKREMEIEQLQKLYEETYEQSAFVRIRMQGEFPSPKEVRGSNYCDMGIAYDERTGRVTVVSVIDNMMKGAAGQAIQNANIIAGLEETTGLQHMPLYL
>NZ_CP041979.1|WP_001003210.1|2095299_2095485_+|hypothetical-protein
MNEKLIEKMIIKSFQQYQCNPMSNEDQEMLIKHIQTIIHSNTEIDVYEAVEDIVYDYVTGK

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Crispr_ID: NZ_CP041979_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041979_5

4860170-4860502

Orphan

Consensus_repeat	Method
CCTTGAACNCCTTGAGGTCCAGT	CRT

6 spacers

The CRISPR arrays of NZ_CP041979_5

>merge|NZ_CP041979|5|4860170-4860502|CRT
CCTTGAACACCTTGAGGTCCAGTGGCACCAGTAGCACCCGCCGGTCCTTGAACGCCTTGAGGTCCAGTGGCACCAGTAGCGCTCTGTTACCTTGAACGCCTTGAGGTCCAGTGAGCGTAGCGCCGGTAGCCCCGCCGGTCCTTGAACGCCTTGAGGTCCAGTGGCACCAGTAGCGCTCTGTTACCTTGAACGCCTTGAGGTCCAGTGCGCGCCTTGAACCCCTGCTGGTCCTTGAGGTCCTTGAGGCCCTTGAGGTCCAGTAGCGCCTTGAGCGCCTGCCGGTCCCTGAGGCCCAGTAGCACCTTGAGCACCAGCCGGTCCTTGAGGTCCAGT

>NZ_CP041979|5|2|4860170-4860502|CRT
CCTTGAACACCTTGAGGTCCAGT	GGCACCAGTAGCACCCGCCGGT
CCTTGAACGCCTTGAGGTCCAGT	GGCACCAGTAGCGCTCTGTTA
CCTTGAACGCCTTGAGGTCCAGT	GAGCGTAGCGCCGGTAGCCCCGCCGGT
CCTTGAACGCCTTGAGGTCCAGT	GGCACCAGTAGCGCTCTGTTA
CCTTGAACGCCTTGAGGTCCAGT	GCGCGCCTTGAACCCCTGCTGGTCCTTGAGGT
CCTTGAGGCCCTTGAGGTCCAGT	AGCGCCTTGAGCGCCTGCCGGTCCCTGAGGCCCAGTAGCACCTTGAGCA
CCAGCCGGTCCTTGAGGTCCAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041979.1\|WP_001053353.1\|4849264_4849462_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041979.1\|WP_000797532.1\|4864774_4866586_-\|HAMP-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|274368
NZ_CP041979.1\|WP_167309281.1\|4868128_4868413_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041979.1\|WP_167309251.1\|4855255_4855840_-\|DUF47-family-protein	unknown	unknown	gnl\|CDD\|224310
NZ_CP041979.1\|WP_000455758.1\|4853328_4854129_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP041979.1\|WP_000380271.1\|4854245_4855244_-\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
NZ_CP041979.1\|WP_000806236.1\|4864136_4864667_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271192
NZ_CP041979.1\|WP_000583785.1\|4871190_4871580_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041979.1\|WP_000937012.1\|4861252_4862524_-\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236901
NZ_CP041979.1\|WP_049111617.1\|4862684_4863530_+\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|224714
NZ_CP041979.1\|WP_000110707.1\|4866742_4867450_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP041979.1\|WP_000882907.1\|4852807_4853035_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041979.1\|WP_000010863.1\|4868417_4871003_-\|bifunctional-lysylphosphatidylglycerol-flippase/synthetase-MprF	unknown	unknown	gnl\|CDD\|225451
NZ_CP041979.1\|WP_000600575.1\|4852128_4852641_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP041979.1\|WP_001094859.1\|4863823_4864018_-\|DUF3924-family-protein	unknown	unknown	gnl\|CDD\|289807
NZ_CP041979.1\|WP_049111544.1\|4849613_4850711_+\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100081
NZ_CP041979.1\|WP_001265562.1\|4858352_4858781_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041979.1\|WP_167309252.1\|4867625_4868096_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041979.1\|WP_049111547.1\|4847424_4848201_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP041979.1\|WP_000947720.1\|4850889_4852098_+\|NO-inducible-flavohemoprotein	unknown	unknown	gnl\|CDD\|237337

Protein	Function_ID	Function_description	E-value
NZ_CP041979.1\|WP_000797532.1\|4864774_4866586_-\|HAMP-domain-containing-sensor-histidine-kinase	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	4.26701e-63
NZ_CP041979.1\|WP_167309251.1\|4855255_4855840_-\|DUF47-family-protein	gnl\|CDD\|224310	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism].	3.31811e-47
NZ_CP041979.1\|WP_000455758.1\|4853328_4854129_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	9.05044e-37
NZ_CP041979.1\|WP_000380271.1\|4854245_4855244_-\|inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	1.59802e-105
NZ_CP041979.1\|WP_000806236.1\|4864136_4864667_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271192	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	2.9028e-41
NZ_CP041979.1\|WP_049111617.1\|4862684_4863530_+\|DUF72-domain-containing-protein	gnl\|CDD\|224714	COG1801, COG1801, Uncharacterized conserved protein [Function unknown].	8.10971e-76
NZ_CP041979.1\|WP_000110707.1\|4866742_4867450_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	1.77954e-168
NZ_CP041979.1\|WP_000937012.1\|4861252_4862524_-\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	3.00968e-65
NZ_CP041979.1\|WP_000600575.1\|4852128_4852641_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.04225e-21
NZ_CP041979.1\|WP_001094859.1\|4863823_4864018_-\|DUF3924-family-protein	gnl\|CDD\|289807	pfam13062, DUF3924, Protein of unknown function (DUF3924). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length.	3.38461e-24
NZ_CP041979.1\|WP_049111544.1\|4849613_4850711_+\|site-2-protease-family-protein	gnl\|CDD\|100081	cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.	1.06312e-42
NZ_CP041979.1\|WP_000010863.1\|4868417_4871003_-\|bifunctional-lysylphosphatidylglycerol-flippase/synthetase-MprF	gnl\|CDD\|225451	COG2898, COG2898, Uncharacterized conserved protein [Function unknown].	2.92894e-138
NZ_CP041979.1\|WP_049111547.1\|4847424_4848201_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	4.996e-33
NZ_CP041979.1\|WP_000947720.1\|4850889_4852098_+\|NO-inducible-flavohemoprotein	gnl\|CDD\|237337	PRK13289, PRK13289, NO-inducible flavohemoprotein.	0

>NZ_CP041979.1|WP_001265562.1|4858352_4858781_-|hypothetical-protein
MRVMSLIRIWFALMVCIILCVGFFLTLKYSTISKAERKTAPYKLLYTKQSNIPYSNATKNEKKVIKGILITKASSSEALLQIAEMIKDQYTNKKVDEITLSIHNENSGNYEEELPYEPISKGQIIVTYDSESFGSTNIILNE
>NZ_CP041979.1|WP_167309251.1|4855255_4855840_-|DUF47-family-protein
MLMNVSENLKEGAQFFVEYKIKNASDLKEFSMRMKEYESKGDSFIHEIIMELNKAFITPIEREDILQLAMSMDDVLDGLDHSAGLFEMYSITEADEYMIKFVEAINQCAIEIANSVELMSNKKLVDIRTNAIKIKDYESQCDDIRRHAIKHLFSREKDPIKIIQYKEIYEELEEVADSCQSVANVLETIIMKNA
>NZ_CP041979.1|WP_000380271.1|4854245_4855244_-|inorganic-phosphate-transporter
MDTLLILTVLVVICALAFDFINGFHDTANAIATAVSTKALKPRHAIIMAAIMNFLGAMTFTGVAKTITKDIVDPFALQNGSLVILAALLAAIAWNLITWYYGIPSSSSHAIIGSIAGAAIAAAGFSSLNFKGFIKIIEALIISPIIAFVIGYIVYSIFKVVFKNFNLTKTNKNFRIFQIFTAALQAYTHGTNDAQKAMGIITMALMANSYHTSSDIPFWVQLSCAIAMGLGTSVGGWKIIKTVGGQIMKIRPVNGVAADLSSSLVIFGATFIHLPVSTTHVISSSILGVGASHRVKGVKWGTAKRMLITWVITLPISASLAALFYSLLHLIF
>NZ_CP041979.1|WP_000455758.1|4853328_4854129_-|sulfite-exporter-TauE/SafE-family-protein
MEYIMLLFIGLIAGTVGSLVGLGGGIIIVPLLIGLHSLSPQLAVGTSMVTVVFTGLSSTLTYMKHKRVDYKSGLILFIGSGPGGIIGSWANKFLNQDTFSLYFGIFLIFVSILLMLRDKLKPLSLSNMTVIKRSFTDNEGNTVHYQFPPLLAIFIAFIVGFISGLFGIGGGALLVPAMMLLFAFPAHIAVATSMFIVFLSAIVSSATHISLGNVSWIYALILIPGAWIGGKIGAYINTKLSGNAVINLLRITLIILGTRLIITSFL
>NZ_CP041979.1|WP_000882907.1|4852807_4853035_+|hypothetical-protein
MLDAIKMTDMRIPANAIIHVEEMKGGVVLSVEVDGQIIYTMAYDEETDSYAELYDRNDKRACQVHEDFMGWSLLH
>NZ_CP041979.1|WP_000600575.1|4852128_4852641_-|Crp/Fnr-family-transcriptional-regulator
MILHKGDVLFRQGEDGPLYFIKTGLLKVVRIEEDGTPFLFNIIVPGETIPHHSLISPKEYHGTAIALMKTEVEPIISNEWYNQLQADPASYANIAMQLQSKLRMMQQRIDQLTTVSPKERLHRLQEWFTLYLGDIPIYEILTQTEIGQLIGIRRETVNRLLREQIKNEVK
>NZ_CP041979.1|WP_000947720.1|4850889_4852098_+|NO-inducible-flavohemoprotein
MLSEKTIEIVKSTVPLLQEKGVEITTRFYEILFSEHPELLNIFNHTNQKKGRQQQALANAVYAAATYIDNLEVIIPVVKQIGHKHRSLGIKAEHYPIVGTCLLRAIKEVAGAPDEVLNAWGEAYGVIADAFISIEAEMYEEAAHKEGGWKDFRNFVVVKKVKESDVITSFYLKPEDGGKVSSFIPGQYVTVQINIEGETYTHNRQYSLSDAPGKEYYRISVKKEKGVDTPDGKVSNYLHDHVKEGDMLPVSAPAGDFVLNMDSTLPVVLISGGVGITPMMSMLNTLIEQDSKRNVCFVHAALNSNTHAMKEHVEAVDNEYEQVKAYTCYSAPTEKDLEMKNFDKEGLIEAEWLQTIIPTTEAEFYFCGPVAFMKHINATLTDLGVKQEHIHYEFFGPAASLQ
>NZ_CP041979.1|WP_049111544.1|4849613_4850711_+|site-2-protease-family-protein
MKNNKKGLWGIIVAIGLFLLSKLKWVFAIFKLAKFSTVFSMFLSLGAYAVIYGWQFGVALIYLLFIHEMGHLWAAKRKGIPTSPAIFIPFMGALIGMKEMPKNAKDEAYIAYMGPLFGLLSFLPAIPLYMITKEPFWALIILLGSMINFFNLIPVSPLDGGRIISVVSTKIWGAGLVLLLGYSIYFKSILGGFIFIIGCMELYRVIKREEPIKELGYKIDGMKEYVARLEEELKETGAVHRNIYMMQHEINVLRQKEREKELKTGELQKIEVLEYLLPKFEPLDYVPYEDEKETHTIHIREAFEMSERKLQEWDADKRQQENYYKVDTKTKWTAFACYIGLMAILGYAAYEGYMVLQEHLPTRNV
>NZ_CP041979.1|WP_001053353.1|4849264_4849462_-|hypothetical-protein
MNLQSLIIGALSFLASTLIFYTVSYVLLLDLLPNHVFIALIILSALMISFLITRKSMNEPSAKAK
>NZ_CP041979.1|WP_049111547.1|4847424_4848201_-|class-I-SAM-dependent-methyltransferase
MSINFHDANNKYTYAQRNAHISWREMIKNITDVQNKRIIDIGCGGGIYTKELALMGAESVVGLDFSKEILQAAKENCSGFSNISFIQGDAHSVPYPNDTFDIVISRAVIHHLQDVPTFLREASRILKKNGVLIVQDRTIEDCTIPGSPEHIRGYFFSIFPKLIEIESKRRPKTTKIQQELQKYFLHVFPTQTQWEIRKIHDSVEALLQDLSPRTGRSILYELTDYELSQLLQQVKTALQNVSPIIERDRWTIWSAMKL
>NZ_CP041979.1|WP_000937012.1|4861252_4862524_-|PAS-domain-containing-sensor-histidine-kinase
MLPKDDIVSHEKRIEELENKVRFYEELVNQLPHHFTYKNPQIGLQIKKTRSTHSIQNIQKENKEADFQLTCDSLFLFKQLETYFVHIFDAFSHHVTFVDNKGNITLCNQAAADDFGVVRNDIIGKPIQQLLKLPEEKIKALETLRTGTEIYNEEVLDKNYGILNNRIIRDYNGEIFRVISVFHYLNTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQETVSPSNKELFKNLLIPELDRANSIITKFLSISKTREFTREPFPINTFLRDYIQQLLASEVFLHNISIDYNFSTELDDILVHIDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGIPSAIQEYIFDPFFSTKDSGTGLGLAVTKKIIQNHNGTLKMTSNEDGTTFTISIPILPKTALERLNQDK
>NZ_CP041979.1|WP_049111617.1|4862684_4863530_+|DUF72-domain-containing-protein
MLFIGVTGWGDHDSLYIDPYENRNKLRTYSEYFPIVEVDSSFYAMQPARNYTKWAMETPKDFSFIVKAYQGMTGHMKGEIPFSTFDEMFDVYKQSILPLIEAGKLKTILFQYPPWFDCKKKNVDFLRYTKEKMEGFPCAIEFRNQTWFYPEMRDKTLKFLEQEKWIHTICDEPQAGMGSVPLVLEVTNAEMVLIRFHGRNVHGWLDKGENWRAVRCLYRYNNKELEEWVERLEQLKKKTKDIYVLFNNNSGGDAADNAKQLMKMMNITYGEPKPEQLNLFE
>NZ_CP041979.1|WP_001094859.1|4863823_4864018_-|DUF3924-family-protein
MNTLTIELPKETAEKLDLLKQAYEKKTGASISESTLVQTLISKEFIQAITPFDLQQFITSKEQH
>NZ_CP041979.1|WP_000806236.1|4864136_4864667_-|tyrosine-type-recombinase/integrase
MKQAGQPIQNEKQLETIKNILLQSSKRDGLLFVLAVNSGLKVSEILQLKVSDVIDENENVRHSILFYNEKVKKHKWFAVNEDLQHAIEDYMKERKTWKRNEPLLKSQKGTKSITRQHAWYILNKAAKEVGLEGISSHTLRKTWGYCAYKSGVDIAFLQHFFDHSTPSKTLKYIGIA
>NZ_CP041979.1|WP_000797532.1|4864774_4866586_-|HAMP-domain-containing-sensor-histidine-kinase
MKNRSIVFKLFLLTSTLFTIIFLLFFLGQSLFLEKFYINKKVKTVQTAFEKFVDTYEKSGKTYEEIRKLKQEFHDKTNADMQFLNTNGIIKSDNNYYIDVFNPKNNETYSIPLNNLLTPEEYKKFENLGLKKDDVINVVGLLQNKTITPIKLTTNYNRWQNEYTNSDFSSINGNPSKNRLTNRYKTVTQIEFTGTISKLQLPSKAEVRLANDIETLQAVQYFAELIRNGTANSQQLNTYIIDSGENIKNSIFVKPIIENGEITEYAFAIASLQPVNEAMLVLKDYYVYALIIVFLVIILLSFYYSKIIVKPLIKMNRVTKKMANFDFSEKLPVTADDEIGGLSGSINTLSVNLKDRIDRLNVANTKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIKDGVSKDTTYYTDVILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELIQQVYTKLLFSMEEKHLQVNIDVDPSIFVKANRSRIEQVVVNLLSNAIRYTPDGEKIQVSVMEMEGTVKVEIENTGNPIPEESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSVVFYFNLQKVKEVK
>NZ_CP041979.1|WP_000110707.1|4866742_4867450_-|purine-nucleoside-phosphorylase
MSVHIEAKQGEIAESILLPGDPLRAKYIAETFLEDVTCYNNVRGMLGFTGTYKGKRVSVQGTGMGVPSISIYVNELIQSYGVKNLIRVGTCGAIQKDVKVRDVIIAMTACTDSNMNRLTFPGFDFAPAANFDLLKKAYDAGTEKGLHVRVGNVLTADVFYRESMDMVKKLGDYGVLAVEMETTALYTLAAKYGVNALSVLTVSDHIFTGEETTSEERQTTFNEMIEIALDAAIQQ
>NZ_CP041979.1|WP_167309252.1|4867625_4868096_+|hypothetical-protein
MVGDVLKNLVIGLVALLFVVVGGFYIKKYQETTETVGDVQEVKWDVSNGKGNEKADIVFQLLNNKSSEVRGVNDQIRAVIVDGQLKHVQQMKPTFAGNGSYKVSSKIAKDEGYTIFLYEDKNKSVQSFAKKDFGKEIEEKNKKKVKFPIDSVLTKK
>NZ_CP041979.1|WP_167309281.1|4868128_4868413_+|hypothetical-protein
MHPNEPVTLTFQFQAKKGEKLKLHSERGEVEALYIVDETRENFLYAIPVDTDGQLQYRITFPAEGTYKIWGDFYINGKKYEKEFIVQVQKRKNS
>NZ_CP041979.1|WP_000010863.1|4868417_4871003_-|bifunctional-lysylphosphatidylglycerol-flippase/synthetase-MprF
MSFSWKRFLQIGKIIFPFVVLTIVFFQAKKELAGISFLEAINTIKNIPTGGVFLAITLGAFAVSTMFFYDYVMLRYLKADIPVQKIFRISWIANTLNGFIGFGGLVGAGVRTMLYRPYIKENGKLIKSIAWMTTAFINGLAILSFLGLIGILDTSFILHEKPWLWPVLIFFALFVPIYIGFSKLKNRKPKQTEGQDEREEEKNPTVLYSLVSLVEWVSAGIVMYVILILFGIDIEFQKFLGVYVIAALAGVVSLVPGGLGSFDLVFLTGLGQYGIDTGVLLPAMLLYRLVYYILPFCLGLIFAAFEMTGVAIKKFEDKPFIAPALETTGVIWTLQRDFLGKLGSWASAALTVFAGLMVILSTILPTSINRAHALHILAPKHLIQFSFSLSLTFGILLLILSRGIYYGTKRSYYMTIVSLIGAAIFNTLKGIDIEETFILLIVLAVLYMLRKRFVREKMEVSLSDIVKVFIFLLITLYLYKNLGILFAGAKEAFKPDFVVRNITQVKRSALAAAFFVPTFLLIGSLIANRYRNEFPGQPANDKRLQNFLDEHGGNVLSHLGFLGDKQFFFSSDGKALLLFSITGKRLVVLGDPIGDPSSYRTVLQEFLAEADRFGYICVFYQIESKWMSLYHDFGYNFFKLGEEAVVDLNTFTITGKKRAGMRATFNRFEREGYTFSIHQPPFSDELFEELRKVSDAWLGGKKEKSFSLGYFDREYISRAPIATLSDADGKIIAFTTFMPVYQDGSLSVDLMRYYPDAPSGIMDAIFIHLFQWAKENEYHSFNIGMAPLSNVGLSTQSFWSERVAAAIFNNVRYTYSFSGLRHFKEKYKPAWSGKYLAFRKNHSLPITMLSVTKLIGKRKNS
>NZ_CP041979.1|WP_000583785.1|4871190_4871580_+|hypothetical-protein
MIIIGYAGYELEKAKPNTSEDFFNRSEVTYILNDKERTFSVLYVRYFEEVLQEITPFEGNPVCKVENQDIYLRDIVAICCLLKENELRMQKRLYLNNIEEFQQYFDEEIVVKVQEILAELHKNKRVEIA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1676398-1676415	0	1.0
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1677182-1677199	0	1.0
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1677227-1677244	0	1.0
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1677423-1677440	0	1.0
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1677467-1677484	0	1.0
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1677512-1677529	0	1.0
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1677601-1677618	0	1.0
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1677640-1677657	0	1.0
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1677855-1677872	0	1.0
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1677900-1677917	0	1.0
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1678304-1678321	0	1.0
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1678349-1678366	0	1.0
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1678486-1678503	0	1.0
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1678531-1678548	0	1.0
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1678575-1678592	0	1.0
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1676651-1676668	1	0.944
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1676783-1676800	1	0.944
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1677298-1677315	1	0.944
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1678169-1678186	1	0.944
NZ_CP041979_2	2.1\|1676087\|18\|NZ_CP041979\|CRT	1676087-1676104	18	NZ_CP041979.1	1678620-1678637	1	0.944
NZ_CP041979_2	2.2\|1676123\|25\|NZ_CP041979\|CRT	1676123-1676147	25	NZ_CP041979.1	1678171-1678195	1	0.96
NZ_CP041979_2	2.2\|1676123\|25\|NZ_CP041979\|CRT	1676123-1676147	25	NZ_CP041979.1	1676400-1676424	2	0.92
NZ_CP041979_2	2.2\|1676123\|25\|NZ_CP041979\|CRT	1676123-1676147	25	NZ_CP041979.1	1677184-1677208	2	0.92
NZ_CP041979_2	2.2\|1676123\|25\|NZ_CP041979\|CRT	1676123-1676147	25	NZ_CP041979.1	1678351-1678375	2	0.92
NZ_CP041979_2	2.2\|1676123\|25\|NZ_CP041979\|CRT	1676123-1676147	25	NZ_CP041979.1	1678488-1678512	2	0.92
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1676694-1676711	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1676739-1676756	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1676955-1676972	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1677000-1677017	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1677092-1677109	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1677137-1677154	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1677341-1677358	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1677386-1677403	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1677721-1677738	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1677766-1677783	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1677811-1677828	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1677945-1677962	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1677991-1678008	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1678036-1678053	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1678124-1678141	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1678215-1678232	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1678260-1678277	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	4859770-4859787	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	4859815-4859832	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	4859925-4859942	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	4860056-4860073	0	1.0
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1676651-1676668	1	0.944
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1676783-1676800	1	0.944
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1677298-1677315	1	0.944
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1678169-1678186	1	0.944
NZ_CP041979_2	2.3\|1676166\|18\|NZ_CP041979\|CRT	1676166-1676183	18	NZ_CP041979.1	1678620-1678637	1	0.944
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1677423-1677448	0	1.0
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1677467-1677492	0	1.0
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1677512-1677537	0	1.0
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1677855-1677880	0	1.0
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1677900-1677925	0	1.0
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1678304-1678329	0	1.0
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1678531-1678556	0	1.0
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1678575-1678600	0	1.0
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1676398-1676423	1	0.962
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1677182-1677207	1	0.962
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1678349-1678374	1	0.962
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1678486-1678511	1	0.962
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1676694-1676719	2	0.923
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1676955-1676980	2	0.923
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1677000-1677025	2	0.923
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1677092-1677117	2	0.923
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1677137-1677162	2	0.923
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1677341-1677366	2	0.923
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1677766-1677791	2	0.923
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1677811-1677836	2	0.923
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1677991-1678016	2	0.923
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1678036-1678061	2	0.923
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1678124-1678149	2	0.923
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1678215-1678240	2	0.923
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1678260-1678285	2	0.923
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	1678620-1678645	2	0.923
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	4859762-4859787	2	0.923
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	4859807-4859832	2	0.923
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	4859917-4859942	2	0.923
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	NZ_CP041979.1	4860048-4860073	2	0.923
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	1676362-1676379	0	1.0
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	4859771-4859788	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	4859816-4859833	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	4859926-4859943	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	4860057-4860074	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	1676693-1676710	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	1676738-1676755	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	1676954-1676971	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	1676999-1677016	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	1677091-1677108	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	1677136-1677153	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	1677340-1677357	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	1677385-1677402	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	1677720-1677737	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	1677765-1677782	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	1677810-1677827	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	1677944-1677961	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	1677990-1678007	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	1678035-1678052	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	1678123-1678140	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	1678214-1678231	1	0.944
NZ_CP041979_2	2.6\|1676290\|18\|NZ_CP041979\|CRT	1676290-1676307	18	NZ_CP041979.1	1678259-1678276	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1678168-1678185	0	1.0
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1678619-1678636	0	1.0
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	4859771-4859788	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	4859816-4859833	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	4859926-4859943	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	4860057-4860074	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1676397-1676414	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1676693-1676710	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1676738-1676755	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1676954-1676971	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1676999-1677016	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1677091-1677108	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1677136-1677153	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1677181-1677198	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1677226-1677243	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1677340-1677357	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1677385-1677402	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1677422-1677439	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1677466-1677483	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1677511-1677528	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1677600-1677617	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1677639-1677656	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1677720-1677737	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1677765-1677782	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1677810-1677827	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1677854-1677871	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1677899-1677916	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1677944-1677961	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1677990-1678007	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1678035-1678052	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1678123-1678140	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1678214-1678231	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1678259-1678276	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1678303-1678320	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1678348-1678365	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1678485-1678502	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1678530-1678547	1	0.944
NZ_CP041979_2	2.7\|1676326\|18\|NZ_CP041979\|CRT	1676326-1676343	18	NZ_CP041979.1	1678574-1678591	1	0.944
NZ_CP041979_5	5.1\|4860193\|22\|NZ_CP041979\|CRT	4860193-4860214	22	NZ_CP041979.1	1677030-1677051	0	1.0
NZ_CP041979_5	5.1\|4860193\|22\|NZ_CP041979\|CRT	4860193-4860214	22	NZ_CP041979.1	1677212-1677233	0	1.0
NZ_CP041979_5	5.1\|4860193\|22\|NZ_CP041979\|CRT	4860193-4860214	22	NZ_CP041979.1	1678516-1678537	0	1.0
NZ_CP041979_5	5.2\|4860238\|21\|NZ_CP041979\|CRT	4860238-4860258	21	NZ_CP041979.1	1677453-1677473	0	1.0
NZ_CP041979_5	5.2\|4860238\|21\|NZ_CP041979\|CRT	4860238-4860258	21	NZ_CP041979.1	1677841-1677861	0	1.0
NZ_CP041979_5	5.2\|4860238\|21\|NZ_CP041979\|CRT	4860238-4860258	21	NZ_CP041979.1	1678290-1678310	0	1.0
NZ_CP041979_5	5.2\|4860238\|21\|NZ_CP041979\|CRT	4860238-4860258	21	NZ_CP041979.1	1678561-1678581	1	0.952
NZ_CP041979_5	5.4\|4860332\|21\|NZ_CP041979\|CRT	4860332-4860352	21	NZ_CP041979.1	1677453-1677473	0	1.0
NZ_CP041979_5	5.4\|4860332\|21\|NZ_CP041979\|CRT	4860332-4860352	21	NZ_CP041979.1	1677841-1677861	0	1.0
NZ_CP041979_5	5.4\|4860332\|21\|NZ_CP041979\|CRT	4860332-4860352	21	NZ_CP041979.1	1678290-1678310	0	1.0
NZ_CP041979_5	5.4\|4860332\|21\|NZ_CP041979\|CRT	4860332-4860352	21	NZ_CP041979.1	1678561-1678581	1	0.952

1. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1676398-1676415, mismatch: 0, identity: 1.0

tggtgccactggacctca	CRISPR spacer
tggtgccactggacctca	Protospacer
******************

2. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1677182-1677199, mismatch: 0, identity: 1.0

tggtgccactggacctca	CRISPR spacer
tggtgccactggacctca	Protospacer
******************

3. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1677227-1677244, mismatch: 0, identity: 1.0

tggtgccactggacctca	CRISPR spacer
tggtgccactggacctca	Protospacer
******************

4. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1677423-1677440, mismatch: 0, identity: 1.0

tggtgccactggacctca	CRISPR spacer
tggtgccactggacctca	Protospacer
******************

5. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1677467-1677484, mismatch: 0, identity: 1.0

tggtgccactggacctca	CRISPR spacer
tggtgccactggacctca	Protospacer
******************

6. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1677512-1677529, mismatch: 0, identity: 1.0

tggtgccactggacctca	CRISPR spacer
tggtgccactggacctca	Protospacer
******************

7. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1677601-1677618, mismatch: 0, identity: 1.0

tggtgccactggacctca	CRISPR spacer
tggtgccactggacctca	Protospacer
******************

8. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1677640-1677657, mismatch: 0, identity: 1.0

tggtgccactggacctca	CRISPR spacer
tggtgccactggacctca	Protospacer
******************

9. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1677855-1677872, mismatch: 0, identity: 1.0

tggtgccactggacctca	CRISPR spacer
tggtgccactggacctca	Protospacer
******************

10. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1677900-1677917, mismatch: 0, identity: 1.0

tggtgccactggacctca	CRISPR spacer
tggtgccactggacctca	Protospacer
******************

11. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1678304-1678321, mismatch: 0, identity: 1.0

tggtgccactggacctca	CRISPR spacer
tggtgccactggacctca	Protospacer
******************

12. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1678349-1678366, mismatch: 0, identity: 1.0

tggtgccactggacctca	CRISPR spacer
tggtgccactggacctca	Protospacer
******************

13. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1678486-1678503, mismatch: 0, identity: 1.0

tggtgccactggacctca	CRISPR spacer
tggtgccactggacctca	Protospacer
******************

14. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1678531-1678548, mismatch: 0, identity: 1.0

tggtgccactggacctca	CRISPR spacer
tggtgccactggacctca	Protospacer
******************

15. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1678575-1678592, mismatch: 0, identity: 1.0

tggtgccactggacctca	CRISPR spacer
tggtgccactggacctca	Protospacer
******************

16. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1676651-1676668, mismatch: 1, identity: 0.944

tggtgccactggacctca	CRISPR spacer
tggcgccactggacctca	Protospacer
***.**************

17. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1676783-1676800, mismatch: 1, identity: 0.944

tggtgccactggacctca	CRISPR spacer
tggcgccactggacctca	Protospacer
***.**************

18. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1677298-1677315, mismatch: 1, identity: 0.944

tggtgccactggacctca	CRISPR spacer
tggcgccactggacctca	Protospacer
***.**************

19. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1678169-1678186, mismatch: 1, identity: 0.944

tggtgccactggacctca	CRISPR spacer
tggtgctactggacctca	Protospacer
******.***********

20. spacer 2.1|1676087|18|NZ_CP041979|CRT matches to position: 1678620-1678637, mismatch: 1, identity: 0.944

tggtgccactggacctca	CRISPR spacer
tggtgctactggacctca	Protospacer
******.***********

21. spacer 2.2|1676123|25|NZ_CP041979|CRT matches to position: 1678171-1678195, mismatch: 1, identity: 0.96

gtgccactggacctcagggtgctca	CRISPR spacer
gtgctactggacctcagggtgctca	Protospacer
****.********************

22. spacer 2.2|1676123|25|NZ_CP041979|CRT matches to position: 1676400-1676424, mismatch: 2, identity: 0.92

gtgccactggacctcagggtgctca	CRISPR spacer
gtgccactggacctcaaggtgttca	Protospacer
****************.****.***

23. spacer 2.2|1676123|25|NZ_CP041979|CRT matches to position: 1677184-1677208, mismatch: 2, identity: 0.92

gtgccactggacctcagggtgctca	CRISPR spacer
gtgccactggacctcaaggtgttca	Protospacer
****************.****.***

24. spacer 2.2|1676123|25|NZ_CP041979|CRT matches to position: 1678351-1678375, mismatch: 2, identity: 0.92

gtgccactggacctcagggtgctca	CRISPR spacer
gtgccactggacctcaaggtgttca	Protospacer
****************.****.***

25. spacer 2.2|1676123|25|NZ_CP041979|CRT matches to position: 1678488-1678512, mismatch: 2, identity: 0.92

gtgccactggacctcagggtgctca	CRISPR spacer
gtgccactggacctcaaggtgttca	Protospacer
****************.****.***

26. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1676694-1676711, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

27. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1676739-1676756, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

28. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1676955-1676972, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

29. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1677000-1677017, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

30. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1677092-1677109, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

31. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1677137-1677154, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

32. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1677341-1677358, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

33. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1677386-1677403, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

34. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1677721-1677738, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

35. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1677766-1677783, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

36. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1677811-1677828, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

37. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1677945-1677962, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

38. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1677991-1678008, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

39. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1678036-1678053, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

40. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1678124-1678141, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

41. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1678215-1678232, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

42. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1678260-1678277, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

43. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 4859770-4859787, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

44. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 4859815-4859832, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

45. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 4859925-4859942, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

46. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 4860056-4860073, mismatch: 0, identity: 1.0

tggcgctactggacctca	CRISPR spacer
tggcgctactggacctca	Protospacer
******************

47. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1676651-1676668, mismatch: 1, identity: 0.944

tggcgctactggacctca	CRISPR spacer
tggcgccactggacctca	Protospacer
******.***********

48. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1676783-1676800, mismatch: 1, identity: 0.944

tggcgctactggacctca	CRISPR spacer
tggcgccactggacctca	Protospacer
******.***********

49. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1677298-1677315, mismatch: 1, identity: 0.944

tggcgctactggacctca	CRISPR spacer
tggcgccactggacctca	Protospacer
******.***********

50. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1678169-1678186, mismatch: 1, identity: 0.944

tggcgctactggacctca	CRISPR spacer
tggtgctactggacctca	Protospacer
***.**************

51. spacer 2.3|1676166|18|NZ_CP041979|CRT matches to position: 1678620-1678637, mismatch: 1, identity: 0.944

tggcgctactggacctca	CRISPR spacer
tggtgctactggacctca	Protospacer
***.**************

52. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1677423-1677448, mismatch: 0, identity: 1.0

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgccactggacctcaaggcgttc	Protospacer
**************************

53. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1677467-1677492, mismatch: 0, identity: 1.0

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgccactggacctcaaggcgttc	Protospacer
**************************

54. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1677512-1677537, mismatch: 0, identity: 1.0

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgccactggacctcaaggcgttc	Protospacer
**************************

55. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1677855-1677880, mismatch: 0, identity: 1.0

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgccactggacctcaaggcgttc	Protospacer
**************************

56. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1677900-1677925, mismatch: 0, identity: 1.0

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgccactggacctcaaggcgttc	Protospacer
**************************

57. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1678304-1678329, mismatch: 0, identity: 1.0

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgccactggacctcaaggcgttc	Protospacer
**************************

58. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1678531-1678556, mismatch: 0, identity: 1.0

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgccactggacctcaaggcgttc	Protospacer
**************************

59. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1678575-1678600, mismatch: 0, identity: 1.0

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgccactggacctcaaggcgttc	Protospacer
**************************

60. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1676398-1676423, mismatch: 1, identity: 0.962

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgccactggacctcaaggtgttc	Protospacer
*********************.****

61. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1677182-1677207, mismatch: 1, identity: 0.962

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgccactggacctcaaggtgttc	Protospacer
*********************.****

62. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1678349-1678374, mismatch: 1, identity: 0.962

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgccactggacctcaaggtgttc	Protospacer
*********************.****

63. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1678486-1678511, mismatch: 1, identity: 0.962

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgccactggacctcaaggtgttc	Protospacer
*********************.****

64. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1676694-1676719, mismatch: 2, identity: 0.923

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggcgctactggacctcaaggcgttc	Protospacer
***.**.*******************

65. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1676955-1676980, mismatch: 2, identity: 0.923

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggcgctactggacctcaaggcgttc	Protospacer
***.**.*******************

66. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1677000-1677025, mismatch: 2, identity: 0.923

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggcgctactggacctcaaggcgttc	Protospacer
***.**.*******************

67. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1677092-1677117, mismatch: 2, identity: 0.923

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggcgctactggacctcaaggcgttc	Protospacer
***.**.*******************

68. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1677137-1677162, mismatch: 2, identity: 0.923

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggcgctactggacctcaaggcgttc	Protospacer
***.**.*******************

69. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1677341-1677366, mismatch: 2, identity: 0.923

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggcgctactggacctcaaggcgttc	Protospacer
***.**.*******************

70. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1677766-1677791, mismatch: 2, identity: 0.923

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggcgctactggacctcaaggcgttc	Protospacer
***.**.*******************

71. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1677811-1677836, mismatch: 2, identity: 0.923

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggcgctactggacctcaaggcgttc	Protospacer
***.**.*******************

72. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1677991-1678016, mismatch: 2, identity: 0.923

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggcgctactggacctcaaggcgttc	Protospacer
***.**.*******************

73. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1678036-1678061, mismatch: 2, identity: 0.923

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggcgctactggacctcaaggcgttc	Protospacer
***.**.*******************

74. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1678124-1678149, mismatch: 2, identity: 0.923

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggcgctactggacctcaaggcgttc	Protospacer
***.**.*******************

75. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1678215-1678240, mismatch: 2, identity: 0.923

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggcgctactggacctcaaggcgttc	Protospacer
***.**.*******************

76. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1678260-1678285, mismatch: 2, identity: 0.923

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggcgctactggacctcaaggcgttc	Protospacer
***.**.*******************

77. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 1678620-1678645, mismatch: 2, identity: 0.923

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgctactggacctcaaggtgttc	Protospacer
******.**************.****

78. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 4859762-4859787, mismatch: 2, identity: 0.923

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggcgctactggacctcaaggcgttc	Protospacer
***.**.*******************

79. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 4859807-4859832, mismatch: 2, identity: 0.923

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggcgctactggacctcaaggcgttc	Protospacer
***.**.*******************

80. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 4859917-4859942, mismatch: 2, identity: 0.923

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggcgctactggacctcaaggcgttc	Protospacer
***.**.*******************

81. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to position: 4860048-4860073, mismatch: 2, identity: 0.923

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggcgctactggacctcaaggcgttc	Protospacer
***.**.*******************

82. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 1676362-1676379, mismatch: 0, identity: 1.0

ctggcgctaccggacctc	CRISPR spacer
ctggcgctaccggacctc	Protospacer
******************

83. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 4859771-4859788, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

84. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 4859816-4859833, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

85. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 4859926-4859943, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

86. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 4860057-4860074, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

87. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 1676693-1676710, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

88. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 1676738-1676755, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

89. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 1676954-1676971, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

90. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 1676999-1677016, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

91. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 1677091-1677108, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

92. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 1677136-1677153, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

93. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 1677340-1677357, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

94. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 1677385-1677402, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

95. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 1677720-1677737, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

96. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 1677765-1677782, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

97. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 1677810-1677827, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

98. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 1677944-1677961, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

99. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 1677990-1678007, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

100. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 1678035-1678052, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

101. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 1678123-1678140, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

102. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 1678214-1678231, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

103. spacer 2.6|1676290|18|NZ_CP041979|CRT matches to position: 1678259-1678276, mismatch: 1, identity: 0.944

ctggcgctaccggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
**********.*******

104. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1678168-1678185, mismatch: 0, identity: 1.0

ctggtgctactggacctc	CRISPR spacer
ctggtgctactggacctc	Protospacer
******************

105. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1678619-1678636, mismatch: 0, identity: 1.0

ctggtgctactggacctc	CRISPR spacer
ctggtgctactggacctc	Protospacer
******************

106. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 4859771-4859788, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

107. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 4859816-4859833, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

108. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 4859926-4859943, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

109. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 4860057-4860074, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

110. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1676397-1676414, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggtgccactggacctc	Protospacer
*******.**********

111. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1676693-1676710, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

112. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1676738-1676755, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

113. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1676954-1676971, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

114. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1676999-1677016, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

115. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1677091-1677108, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

116. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1677136-1677153, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

117. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1677181-1677198, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggtgccactggacctc	Protospacer
*******.**********

118. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1677226-1677243, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggtgccactggacctc	Protospacer
*******.**********

119. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1677340-1677357, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

120. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1677385-1677402, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

121. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1677422-1677439, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggtgccactggacctc	Protospacer
*******.**********

122. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1677466-1677483, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggtgccactggacctc	Protospacer
*******.**********

123. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1677511-1677528, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggtgccactggacctc	Protospacer
*******.**********

124. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1677600-1677617, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggtgccactggacctc	Protospacer
*******.**********

125. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1677639-1677656, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggtgccactggacctc	Protospacer
*******.**********

126. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1677720-1677737, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

127. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1677765-1677782, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

128. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1677810-1677827, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

129. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1677854-1677871, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggtgccactggacctc	Protospacer
*******.**********

130. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1677899-1677916, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggtgccactggacctc	Protospacer
*******.**********

131. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1677944-1677961, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

132. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1677990-1678007, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

133. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1678035-1678052, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

134. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1678123-1678140, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

135. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1678214-1678231, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

136. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1678259-1678276, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggcgctactggacctc	Protospacer
****.*************

137. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1678303-1678320, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggtgccactggacctc	Protospacer
*******.**********

138. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1678348-1678365, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggtgccactggacctc	Protospacer
*******.**********

139. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1678485-1678502, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggtgccactggacctc	Protospacer
*******.**********

140. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1678530-1678547, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggtgccactggacctc	Protospacer
*******.**********

141. spacer 2.7|1676326|18|NZ_CP041979|CRT matches to position: 1678574-1678591, mismatch: 1, identity: 0.944

ctggtgctactggacctc	CRISPR spacer
ctggtgccactggacctc	Protospacer
*******.**********

142. spacer 5.1|4860193|22|NZ_CP041979|CRT matches to position: 1677030-1677051, mismatch: 0, identity: 1.0

ggcaccagtagcacccgccggt	CRISPR spacer
ggcaccagtagcacccgccggt	Protospacer
**********************

143. spacer 5.1|4860193|22|NZ_CP041979|CRT matches to position: 1677212-1677233, mismatch: 0, identity: 1.0

ggcaccagtagcacccgccggt	CRISPR spacer
ggcaccagtagcacccgccggt	Protospacer
**********************

144. spacer 5.1|4860193|22|NZ_CP041979|CRT matches to position: 1678516-1678537, mismatch: 0, identity: 1.0

ggcaccagtagcacccgccggt	CRISPR spacer
ggcaccagtagcacccgccggt	Protospacer
**********************

145. spacer 5.2|4860238|21|NZ_CP041979|CRT matches to position: 1677453-1677473, mismatch: 0, identity: 1.0

ggcaccagtagcgctctgtta	CRISPR spacer
ggcaccagtagcgctctgtta	Protospacer
*********************

146. spacer 5.2|4860238|21|NZ_CP041979|CRT matches to position: 1677841-1677861, mismatch: 0, identity: 1.0

ggcaccagtagcgctctgtta	CRISPR spacer
ggcaccagtagcgctctgtta	Protospacer
*********************

147. spacer 5.2|4860238|21|NZ_CP041979|CRT matches to position: 1678290-1678310, mismatch: 0, identity: 1.0

ggcaccagtagcgctctgtta	CRISPR spacer
ggcaccagtagcgctctgtta	Protospacer
*********************

148. spacer 5.2|4860238|21|NZ_CP041979|CRT matches to position: 1678561-1678581, mismatch: 1, identity: 0.952

ggcaccagtagcgctctgtta	CRISPR spacer
ggcaccagtagcactctgtta	Protospacer
************.********

149. spacer 5.4|4860332|21|NZ_CP041979|CRT matches to position: 1677453-1677473, mismatch: 0, identity: 1.0

ggcaccagtagcgctctgtta	CRISPR spacer
ggcaccagtagcgctctgtta	Protospacer
*********************

150. spacer 5.4|4860332|21|NZ_CP041979|CRT matches to position: 1677841-1677861, mismatch: 0, identity: 1.0

ggcaccagtagcgctctgtta	CRISPR spacer
ggcaccagtagcgctctgtta	Protospacer
*********************

151. spacer 5.4|4860332|21|NZ_CP041979|CRT matches to position: 1678290-1678310, mismatch: 0, identity: 1.0

ggcaccagtagcgctctgtta	CRISPR spacer
ggcaccagtagcgctctgtta	Protospacer
*********************

152. spacer 5.4|4860332|21|NZ_CP041979|CRT matches to position: 1678561-1678581, mismatch: 1, identity: 0.952

ggcaccagtagcgctctgtta	CRISPR spacer
ggcaccagtagcactctgtta	Protospacer
************.********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041979_2	2.2\|1676123\|25\|NZ_CP041979\|CRT	1676123-1676147	25	MN693092	Marine virus AFVG_25M37, complete genome	19119-19143	4	0.84
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	MN693092	Marine virus AFVG_25M37, complete genome	19117-19142	4	0.846
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	AP013669	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C108A-MedDCM-OCT-S25-C43, * SEQUENCING IN PROGRESS *	3675-3700	5	0.808
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	MN693099	Marine virus AFVG_25M184, complete genome	13865-13890	5	0.808
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	AP013411	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C108A-MedDCM-OCT-S29-C43	29805-29830	5	0.808
NZ_CP041979_5	5.3\|4860282\|27\|NZ_CP041979\|CRT	4860282-4860308	27	NZ_CP053580	Salmonella enterica strain 94-0093 plasmid unnamed, complete sequence	84018-84044	5	0.815
NZ_CP041979_2	2.4\|1676202\|26\|NZ_CP041979\|CRT	1676202-1676227	26	AP014476	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5C-MedDCM-OCT-S42-C91, * SEQUENCING IN PROGRESS *, 2 ordered pieces	17307-17332	6	0.769
NZ_CP041979_2	2.4\|1676202\|26\|NZ_CP041979\|CRT	1676202-1676227	26	AP013942	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5C-MedDCM-OCT-S39-C99, * SEQUENCING IN PROGRESS *	14907-14932	6	0.769
NZ_CP041979_2	2.4\|1676202\|26\|NZ_CP041979\|CRT	1676202-1676227	26	AP013564	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C5-MedDCM-OCT-S33-C6, * SEQUENCING IN PROGRESS *, 4 ordered pieces	9196-9221	6	0.769
NZ_CP041979_2	2.4\|1676202\|26\|NZ_CP041979\|CRT	1676202-1676227	26	AP013944	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5C-MedDCM-OCT-S41-C114, * SEQUENCING IN PROGRESS *	9026-9051	6	0.769
NZ_CP041979_2	2.4\|1676202\|26\|NZ_CP041979\|CRT	1676202-1676227	26	AP013943	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5C-MedDCM-OCT-S40-C165, * SEQUENCING IN PROGRESS *	9798-9823	6	0.769
NZ_CP041979_2	2.4\|1676202\|26\|NZ_CP041979\|CRT	1676202-1676227	26	AP013945	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5C-MedDCM-OCT-S43-C137, * SEQUENCING IN PROGRESS *	4495-4520	6	0.769
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	AP013669	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C108A-MedDCM-OCT-S25-C43, * SEQUENCING IN PROGRESS *	3984-4009	6	0.769
NZ_CP041979_2	2.5\|1676246\|26\|NZ_CP041979\|CRT	1676246-1676271	26	AP013411	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C108A-MedDCM-OCT-S29-C43	29496-29521	6	0.769
NZ_CP041979_5	5.3\|4860282\|27\|NZ_CP041979\|CRT	4860282-4860308	27	NZ_LR134468	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence	21111-21137	6	0.778
NZ_CP041979_5	5.3\|4860282\|27\|NZ_CP041979\|CRT	4860282-4860308	27	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2355800-2355826	6	0.778
NZ_CP041979_5	5.3\|4860282\|27\|NZ_CP041979\|CRT	4860282-4860308	27	NC_014214	Meiothermus silvanus DSM 9946 plasmid pMESIL02, complete sequence	111826-111852	6	0.778
NZ_CP041979_5	5.5\|4860376\|32\|NZ_CP041979\|CRT	4860376-4860407	32	NZ_AP019741	Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413 plasmid pARA1, complete sequence	149338-149369	10	0.688
NZ_CP041979_5	5.5\|4860376\|32\|NZ_CP041979\|CRT	4860376-4860407	32	MN857473	Teseptimavirus S2B, complete genome	17166-17197	10	0.688

1. spacer 2.2|1676123|25|NZ_CP041979|CRT matches to MN693092 (Marine virus AFVG_25M37, complete genome) position: , mismatch: 4, identity: 0.84

gtgccactggacctcagggtgctca	CRISPR spacer
gtgctactggacctcaaggtgctac	Protospacer
****.***********.******

2. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to MN693092 (Marine virus AFVG_25M37, complete genome) position: , mismatch: 4, identity: 0.846

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgctactggacctcaaggtgcta	Protospacer
******.**************.*.*

3. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to AP013669 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C108A-MedDCM-OCT-S25-C43, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.808

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgcaactggacctcaaggttcta	Protospacer
****** **************. .*

4. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to MN693099 (Marine virus AFVG_25M184, complete genome) position: , mismatch: 5, identity: 0.808

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgctactggacctcaaggaccta	Protospacer
******.**************  .*

5. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to AP013411 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C108A-MedDCM-OCT-S29-C43) position: , mismatch: 5, identity: 0.808

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgcaactggacctcaaggttcta	Protospacer
****** **************. .*

6. spacer 5.3|4860282|27|NZ_CP041979|CRT matches to NZ_CP053580 (Salmonella enterica strain 94-0093 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

gagcgtagcgccggtagccccgccggt	CRISPR spacer
gagcgtagcgacggaagccccgcagcg	Protospacer
********** *** ******** *

7. spacer 2.4|1676202|26|NZ_CP041979|CRT matches to AP014476 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5C-MedDCM-OCT-S42-C91, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 6, identity: 0.769

cggcgctactggacctcaaggcgttc	CRISPR spacer
cggcgctactgggcctcaaggaccag	Protospacer
************.********  .

8. spacer 2.4|1676202|26|NZ_CP041979|CRT matches to AP013942 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5C-MedDCM-OCT-S39-C99, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.769

cggcgctactggacctcaaggcgttc	CRISPR spacer
cggcgctactgggcctcaaggaccag	Protospacer
************.********  .

9. spacer 2.4|1676202|26|NZ_CP041979|CRT matches to AP013564 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C5-MedDCM-OCT-S33-C6, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces) position: , mismatch: 6, identity: 0.769

cggcgctactggacctcaaggcgttc	CRISPR spacer
cggcgctactgggcctcaaggaccag	Protospacer
************.********  .

10. spacer 2.4|1676202|26|NZ_CP041979|CRT matches to AP013944 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5C-MedDCM-OCT-S41-C114, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.769

cggcgctactggacctcaaggcgttc	CRISPR spacer
cggcgctactgggcctcaaggaccag	Protospacer
************.********  .

11. spacer 2.4|1676202|26|NZ_CP041979|CRT matches to AP013943 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5C-MedDCM-OCT-S40-C165, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.769

cggcgctactggacctcaaggcgttc	CRISPR spacer
cggcgctactgggcctcaaggaccag	Protospacer
************.********  .

12. spacer 2.4|1676202|26|NZ_CP041979|CRT matches to AP013945 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5C-MedDCM-OCT-S43-C137, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.769

cggcgctactggacctcaaggcgttc	CRISPR spacer
cggcgctactgggcctcaaggaccag	Protospacer
************.********  .

13. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to AP013669 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C108A-MedDCM-OCT-S25-C43, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.769

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgctactggacctcaaggaccag	Protospacer
******.**************  .

14. spacer 2.5|1676246|26|NZ_CP041979|CRT matches to AP013411 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C108A-MedDCM-OCT-S29-C43) position: , mismatch: 6, identity: 0.769

tggtgccactggacctcaaggcgttc	CRISPR spacer
tggtgctactggacctcaaggaccag	Protospacer
******.**************  .

15. spacer 5.3|4860282|27|NZ_CP041979|CRT matches to NZ_LR134468 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence) position: , mismatch: 6, identity: 0.778

gagcgtagcgccggtagccccgccggt	CRISPR spacer
tgccgtagcgccgggagcaccgccgga	Protospacer
 . *********** *** *******

16. spacer 5.3|4860282|27|NZ_CP041979|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.778

gagcgtagcgccggtagccccgccggt	CRISPR spacer
cgaggtagcgcaggtagcgccgccggt	Protospacer
 .. ******* ****** ********

17. spacer 5.3|4860282|27|NZ_CP041979|CRT matches to NC_014214 (Meiothermus silvanus DSM 9946 plasmid pMESIL02, complete sequence) position: , mismatch: 6, identity: 0.778

gagcgtagcgccggtagccccgccggt	CRISPR spacer
cgccgtagcgccggtaggcccgcaggg	Protospacer
 . ************** ***** **

18. spacer 5.5|4860376|32|NZ_CP041979|CRT matches to NZ_AP019741 (Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413 plasmid pARA1, complete sequence) position: , mismatch: 10, identity: 0.688

gcgcgccttgaacccctgctggtccttgaggt	CRISPR spacer
cttcttcttgaacccctgctgatacttgatca	Protospacer
 . * .***************.* *****

19. spacer 5.5|4860376|32|NZ_CP041979|CRT matches to MN857473 (Teseptimavirus S2B, complete genome) position: , mismatch: 10, identity: 0.688

gcgcgccttgaacccctgctggtccttgaggt	CRISPR spacer
ggtgatcttgaagccctgctggaccttgaccg	Protospacer
*   ..****** ********* ******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2838564 : 2881597

Prochlorococcus_phage(14.29%)

protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049111495.1\|2838564_2839242_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_049111501.1\|2839340_2840135_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_000248590.1\|2840187_2840496_-	YuzD family protein	NA	NA	NA	NA
WP_000431159.1\|2840702_2840939_+	NifU family protein	Q58MC7	Prochlorococcus_phage	2.0e-10	46.6
WP_014893439.1\|2841133_2841349_+	hypothetical protein	NA	NA	NA	NA
WP_000581269.1\|2841410_2842412_-\|coat	spore coat protein CotS	NA	NA	NA	NA
WP_000665103.1\|2842532_2843024_+	phosphatidylglycerophosphatase A	G3MBC5	Bacillus_virus	3.5e-41	53.8
WP_049111494.1\|2843044_2843524_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_049111492.1\|2843685_2844792_+	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_014893437.1\|2844736_2846083_+	hypothetical protein	NA	NA	NA	NA
WP_014893436.1\|2846088_2847201_+\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	4.0e-40	32.0
WP_000575371.1\|2847197_2848013_+	HAD hydrolase family protein	NA	NA	NA	NA
WP_049111490.1\|2848557_2849139_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_000276467.1\|2849324_2850089_-	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA
WP_000503352.1\|2850198_2850831_-	transcriptional regulator	NA	NA	NA	NA
WP_000274011.1\|2850902_2851343_-	DUF86 domain-containing protein	NA	NA	NA	NA
WP_167309197.1\|2851490_2852462_+	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_000392606.1\|2852479_2852746_+	DUF3055 domain-containing protein	NA	NA	NA	NA
WP_014893433.1\|2853115_2853610_+	hypothetical protein	NA	NA	NA	NA
WP_000435941.1\|2853646_2853949_-	YutD family protein	NA	NA	NA	NA
WP_014893432.1\|2854067_2854646_+	hypothetical protein	NA	NA	NA	NA
WP_001241001.1\|2854683_2855415_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_002163480.1\|2855500_2856316_+\|protease	YhfC family intramembrane metalloprotease	NA	NA	NA	NA
WP_000738185.1\|2856338_2856782_-	hypothetical protein	NA	NA	NA	NA
WP_154214280.1\|2856887_2857061_-	hypothetical protein	NA	NA	NA	NA
WP_000721017.1\|2857034_2857589_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_049111935.1\|2857663_2858143_+	YbaK/EbsC family protein	NA	NA	NA	NA
WP_000166370.1\|2858163_2859060_-	lipoyl synthase	NA	NA	NA	NA
WP_000944675.1\|2859249_2860233_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_049111936.1\|2860269_2861001_-	sporulation protein YunB	NA	NA	NA	NA
WP_000248463.1\|2861055_2861358_-	DUF1805 domain-containing protein	NA	NA	NA	NA
WP_080354020.1\|2861423_2862815_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_000356633.1\|2863404_2863734_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_049111945.1\|2863733_2864480_+	VanZ family protein	NA	NA	NA	NA
WP_001118823.1\|2864681_2866079_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_000009523.1\|2866127_2866559_-	iron-sulfur cluster assembly scaffold protein SufU	A0A0K1LS29	Mycobacterium_phage	1.5e-14	37.6
WP_001020761.1\|2866548_2867769_-	cysteine desulfurase SufS	Q2XUY6	environmental_halophage	3.6e-119	48.1
WP_000152165.1\|2867768_2869061_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_000929157.1\|2869076_2869862_-	Fe-S cluster assembly ATPase SufC	A0A285PWH2	Cedratvirus	7.5e-09	25.8
WP_000722401.1\|2870100_2870907_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000735105.1\|2870979_2871792_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000359556.1\|2871815_2872481_-	ABC transporter permease	NA	NA	NA	NA
WP_000601759.1\|2872473_2873499_-	methionine ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_000781222.1\|2873910_2874255_-	hypothetical protein	NA	NA	NA	NA
WP_000568162.1\|2874409_2874709_-	thioredoxin family protein	NA	NA	NA	NA
WP_000263237.1\|2874721_2875066_-	hypothetical protein	NA	NA	NA	NA
WP_000026896.1\|2875392_2875776_-	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_000218967.1\|2875817_2876183_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	6.7e-21	48.6
WP_000713743.1\|2877354_2878002_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_000666177.1\|2878058_2879072_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_000820657.1\|2879094_2880045_-	L-lactate dehydrogenase	NA	NA	NA	NA
WP_001002987.1\|2880289_2880538_-\|coat	spore coat protein	NA	NA	NA	NA
WP_001180555.1\|2880551_2880737_-	hypothetical protein	NA	NA	NA	NA
WP_049110975.1\|2880883_2881597_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

3715401 : 3723773

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000625679.1\|3715401_3716709_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.1e-20	25.0
WP_001170542.1\|3716797_3717517_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	5.2e-49	44.3
WP_000278826.1\|3717509_3717764_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000055585.1\|3718426_3720646_+	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	1.7e-162	41.0
WP_000879021.1\|3720630_3722046_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.3e-55	35.4
WP_049111670.1\|3722148_3723189_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	9.4e-68	45.9
WP_000088580.1\|3723185_3723773_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.5e-27	37.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041978

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP041979

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection