CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047593	Kiritimatiellaeota bacterium S-5007 chromosome, complete genome	2 crisprs	csa3,DEDDh,RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,DinG	0	18	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047593_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047593_1

2315489-2317353

TypeI

I-C

Consensus_repeat	Method
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	PILER-CR
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	CRT

28 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP047593_1

>merge|NZ_CP047593|1|2315489-2317353|PILER-CR,CRISPRCasFinder,CRT
GTCGCCCGCCACGCGCGGGCGTGGATTGAAACGTACCATCAGGCGTTAAGGTCTCGGCTGTAAGGTCGCCCGCCACGCGCGGGCGTGGATTGAAACAGAATAGCAGAACCGGCAACCGCCTCCTGTCTCGTCGCCCGCCACGCGCGGGCGTGGATTGAAACACCTCCACCAGCTGATGCTGCTCGCCGTCAAATAGTCGCCCGCCACGCGCGGGCGTGGATTGAAACGTGGTTAACCGTTCCCGCCTTCCAGGAACTCGAGTCGCCCGCCACGCGCGGGCGTGGATTGAAACAGAGGAGACGATTCGGACTTTGCTGATTTGCGGAGTCGCCCGCCACGCGCGGGCGTGGATTGAAACATTGATAACCCGGTTCTCACCACCGGCAGAAAGTCGCCCGCCACGCGCGGGCGTGGATTGAAACACGACTGGCCGTGAAGGAAGAGTGCAAATTAAGCGTCGCCCGCCACGCGCGGGCGTGGATTGAAACAACAAAGTCGCGGCGTACTGCACTGGCCGGACGGTCGCCCGCCACGCGCGGGCGTGGATTGAAACTGCTGAATCCGATGCTCGAGAAGCACTTGCTCAGGTCGCCCGCCACGCGCGGGCGTGGATTGAAACATGATGGGCGGTGCAACGACCGGCAGCCTTAATAGTCGCCCGCCACGCGCGGGCGTGGATTGAAACCCGTCAGTTTGTTGGCAGTTTCCGGAAGCGCCTCGTCGCCCGCCACGCGCGGGCGTGGATTGAAACCTGATCCTTGATTCCGTTGAATATCACCCGGAAAGTCGCCCGCCACGCGCGGGCGTGGATTGAAACCTGCGGGCCGAACTGCTGATTAATCAGAGACAGGTCGCCCGCCACGCGCGGGCGTGGATTGAAACCTTGAAGCCTTGCTTTTCGCCGGTATGGGATTAGTCGCCCGCCACGCGCGGGCGTGGATTGAAACGTGTGCAGCGTCAGCAGGTTGCCGCTGCCGTCATGTCGCCCGCCACGCGCGGGCGTGGATTGAAACGAGTTCGCGGCAGTGATGCTGAAGAAATTCGATCGTCGCCCGCCACGCGCGGGCGTGGATTGAAACTCGATGGCCTGCGCACAGGTGATATCCGTTTCCTGTCGCCCGCCACGCGCGGGCGTGGATTGAAACGGCTATCAAGAGCGTTGGGCCGAGTACCGTTATGTCGCCCGCCACGCGCGGGCGTGGATTGAAACAAGTCAGTCAACAAGCAAGCCTTAGCGGACCTTAGTCGCCCGCCACGCGCGGGCGTGGATTGAAACATCTTGGATGCTGATAAGAGTTCTTTGCGCATCGTCGCCCGCCACGCGCGGGCGTGGATTGAAACCGGCTCAGGCTCGAACGTAGAGCAGCTCATCACGTCGCCCGCCACGCGCGGGCGTGGATTGAAACTCACCCCTGGATGTATCCAACCGGCACCAGGTGGTCGCCCGCCACGCGCGGGCGTGGATTGAAACTGGTCGATCTTGCGGCCGGCAGTGTCGTTATCGCGTCGCCCGCCACGCGCGGGCGTGGATTGAAACATTACACCCTCCGTATCAGATCAATTAACTTAAAGTCGCCCGCCACGCGCGGGCGTGGATTGAAACTCAAGCAAAAGTAGAGGTCAGTTTACAGCCAGTCGTCGCCCGCCACGCGCGGGCGTGGATTGAAACATGTCCGCCACTTATTACGAAGGTCAACGGCTCGTCGCCCGCCACGCGCGGGCGTGGATTGAAACGGCTATCAAGAGCGTTGGGCCGAGTACCGTTATGTCGCCCGCCACGCGCGGGCGTGGATTGAAACAGCTACTGCGAGTGGATCTGCTCCGTTTGGTGAAGTCGCCCGCCACGCGCGGGCGTGGATTGACAT

>NZ_CP047593|1|1|2315489-2317287|PILER-CR
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	GTACCATCAGGCGTTAAGGTCTCGGCTGTAAG
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	AGAATAGCAGAACCGGCAACCGCCTCCTGTCTC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ACCTCCACCAGCTGATGCTGCTCGCCGTCAAATA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	GTGGTTAACCGTTCCCGCCTTCCAGGAACTCGA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	AGAGGAGACGATTCGGACTTTGCTGATTTGCGGA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ATTGATAACCCGGTTCTCACCACCGGCAGAAA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ACGACTGGCCGTGAAGGAAGAGTGCAAATTAAGC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	AACAAAGTCGCGGCGTACTGCACTGGCCGGACG
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	TGCTGAATCCGATGCTCGAGAAGCACTTGCTCAG
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ATGATGGGCGGTGCAACGACCGGCAGCCTTAATA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	CCGTCAGTTTGTTGGCAGTTTCCGGAAGCGCCTC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	CTGATCCTTGATTCCGTTGAATATCACCCGGAAA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	CTGCGGGCCGAACTGCTGATTAATCAGAGACAG
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	CTTGAAGCCTTGCTTTTCGCCGGTATGGGATTA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	GTGTGCAGCGTCAGCAGGTTGCCGCTGCCGTCAT
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	GAGTTCGCGGCAGTGATGCTGAAGAAATTCGATC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	TCGATGGCCTGCGCACAGGTGATATCCGTTTCCT
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	GGCTATCAAGAGCGTTGGGCCGAGTACCGTTAT
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	AAGTCAGTCAACAAGCAAGCCTTAGCGGACCTTA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ATCTTGGATGCTGATAAGAGTTCTTTGCGCATC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	CGGCTCAGGCTCGAACGTAGAGCAGCTCATCAC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	TCACCCCTGGATGTATCCAACCGGCACCAGGTG
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	TGGTCGATCTTGCGGCCGGCAGTGTCGTTATCGC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ATTACACCCTCCGTATCAGATCAATTAACTTAAA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	TCAAGCAAAAGTAGAGGTCAGTTTACAGCCAGTC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ATGTCCGCCACTTATTACGAAGGTCAACGGCTC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	GGCTATCAAGAGCGTTGGGCCGAGTACCGTTAT
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC

>NZ_CP047593|1|1|2315489-2317353|CRISPRCasFinder
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	GTACCATCAGGCGTTAAGGTCTCGGCTGTAAG
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	AGAATAGCAGAACCGGCAACCGCCTCCTGTCTC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ACCTCCACCAGCTGATGCTGCTCGCCGTCAAATA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	GTGGTTAACCGTTCCCGCCTTCCAGGAACTCGA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	AGAGGAGACGATTCGGACTTTGCTGATTTGCGGA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ATTGATAACCCGGTTCTCACCACCGGCAGAAA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ACGACTGGCCGTGAAGGAAGAGTGCAAATTAAGC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	AACAAAGTCGCGGCGTACTGCACTGGCCGGACG
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	TGCTGAATCCGATGCTCGAGAAGCACTTGCTCAG
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ATGATGGGCGGTGCAACGACCGGCAGCCTTAATA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	CCGTCAGTTTGTTGGCAGTTTCCGGAAGCGCCTC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	CTGATCCTTGATTCCGTTGAATATCACCCGGAAA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	CTGCGGGCCGAACTGCTGATTAATCAGAGACAG
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	CTTGAAGCCTTGCTTTTCGCCGGTATGGGATTA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	GTGTGCAGCGTCAGCAGGTTGCCGCTGCCGTCAT
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	GAGTTCGCGGCAGTGATGCTGAAGAAATTCGATC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	TCGATGGCCTGCGCACAGGTGATATCCGTTTCCT
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	GGCTATCAAGAGCGTTGGGCCGAGTACCGTTAT
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	AAGTCAGTCAACAAGCAAGCCTTAGCGGACCTTA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ATCTTGGATGCTGATAAGAGTTCTTTGCGCATC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	CGGCTCAGGCTCGAACGTAGAGCAGCTCATCAC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	TCACCCCTGGATGTATCCAACCGGCACCAGGTG
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	TGGTCGATCTTGCGGCCGGCAGTGTCGTTATCGC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ATTACACCCTCCGTATCAGATCAATTAACTTAAA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	TCAAGCAAAAGTAGAGGTCAGTTTACAGCCAGTC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ATGTCCGCCACTTATTACGAAGGTCAACGGCTC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	GGCTATCAAGAGCGTTGGGCCGAGTACCGTTAT
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	AGCTACTGCGAGTGGATCTGCTCCGTTTGGTGAA
GTCGCCCGCCACGCGCGGGCGTGGATTGACAT

>NZ_CP047593|1|1|2315489-2317353|CRT
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	GTACCATCAGGCGTTAAGGTCTCGGCTGTAAG
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	AGAATAGCAGAACCGGCAACCGCCTCCTGTCTC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ACCTCCACCAGCTGATGCTGCTCGCCGTCAAATA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	GTGGTTAACCGTTCCCGCCTTCCAGGAACTCGA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	AGAGGAGACGATTCGGACTTTGCTGATTTGCGGA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ATTGATAACCCGGTTCTCACCACCGGCAGAAA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ACGACTGGCCGTGAAGGAAGAGTGCAAATTAAGC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	AACAAAGTCGCGGCGTACTGCACTGGCCGGACG
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	TGCTGAATCCGATGCTCGAGAAGCACTTGCTCAG
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ATGATGGGCGGTGCAACGACCGGCAGCCTTAATA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	CCGTCAGTTTGTTGGCAGTTTCCGGAAGCGCCTC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	CTGATCCTTGATTCCGTTGAATATCACCCGGAAA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	CTGCGGGCCGAACTGCTGATTAATCAGAGACAG
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	CTTGAAGCCTTGCTTTTCGCCGGTATGGGATTA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	GTGTGCAGCGTCAGCAGGTTGCCGCTGCCGTCAT
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	GAGTTCGCGGCAGTGATGCTGAAGAAATTCGATC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	TCGATGGCCTGCGCACAGGTGATATCCGTTTCCT
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	GGCTATCAAGAGCGTTGGGCCGAGTACCGTTAT
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	AAGTCAGTCAACAAGCAAGCCTTAGCGGACCTTA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ATCTTGGATGCTGATAAGAGTTCTTTGCGCATC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	CGGCTCAGGCTCGAACGTAGAGCAGCTCATCAC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	TCACCCCTGGATGTATCCAACCGGCACCAGGTG
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	TGGTCGATCTTGCGGCCGGCAGTGTCGTTATCGC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ATTACACCCTCCGTATCAGATCAATTAACTTAAA
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	TCAAGCAAAAGTAGAGGTCAGTTTACAGCCAGTC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	ATGTCCGCCACTTATTACGAAGGTCAACGGCTC
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	GGCTATCAAGAGCGTTGGGCCGAGTACCGTTAT
GTCGCCCGCCACGCGCGGGCGTGGATTGAAAC	AGCTACTGCGAGTGGATCTGCTCCGTTTGGTGAA
GTCGCCCGCCACGCGCGGGCGTGGATTGACAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047593.1\|WP_160628870.1\|2313977_2315000_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP047593.1\|WP_160628878.1\|2324780_2326805_+\|DUF255-domain-containing-protein	unknown	unknown	gnl\|CDD\|224250
NZ_CP047593.1\|WP_160628866.1\|2310170_2311862_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP047593.1\|WP_160628875.1\|2321608_2322850_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377417
NZ_CP047593.1\|WP_160628868.1\|2312729_2313377_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|275085
NZ_CP047593.1\|WP_160628871.1\|2315014_2315308_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP047593.1\|WP_160628877.1\|2323521_2324646_+\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NZ_CP047593.1\|WP_160628863.1\|2306547_2307270_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP047593.1\|WP_160628874.1\|2318306_2321195_-\|peptidase-M16	unknown	unknown	gnl\|CDD\|223957
NZ_CP047593.1\|WP_160628880.1\|2328905_2330009_-\|chemotaxis-specific-protein-glutamate-methyltransferase-CheB	unknown	unknown	gnl\|CDD\|234828
NZ_CP047593.1\|WP_160628869.1\|2313373_2313994_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP047593.1\|WP_160628865.1\|2309544_2310174_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP047593.1\|WP_160628873.1\|2317919_2318306_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047593.1\|WP_160628864.1\|2307352_2309533_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP047593.1\|WP_160628862.1\|2306346_2306499_+\|small-basic-protein	unknown	unknown	gnl\|CDD\|275006
NZ_CP047593.1\|WP_160628876.1\|2322913_2323540_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|223710
NZ_CP047593.1\|WP_160628881.1\|2330025_2332302_-\|response-regulator	unknown	unknown	gnl\|CDD\|223716
NZ_CP047593.1\|WP_160628879.1\|2326773_2328909_-\|response-regulator	unknown	unknown	gnl\|CDD\|236848
NZ_CP047593.1\|WP_160628867.1\|2311858_2312716_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP047593.1\|WP_160628872.1\|2317532_2317898_+\|response-regulator	unknown	unknown	gnl\|CDD\|381085

Protein	Function_ID	Function_description	E-value
NZ_CP047593.1\|WP_160628870.1\|2313977_2315000_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP047593.1\|WP_160628878.1\|2324780_2326805_+\|DUF255-domain-containing-protein	gnl\|CDD\|224250	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP047593.1\|WP_160628866.1\|2310170_2311862_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP047593.1\|WP_160628875.1\|2321608_2322850_-\|hypothetical-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	0.00048658
NZ_CP047593.1\|WP_160628868.1\|2312729_2313377_+\|four-helix-bundle-protein	gnl\|CDD\|275085	TIGR04258, hypothetical_protein, four helix bundle suffix domain. This domain occurs as a suffix domain to some members of the much broader protein family TIGR02436, a few of whose other members are encoded within intervening sequences of bacterial 23S ribosomal RNA. Some proteins with this domain, in turn, are followed by a predicted DNA topoisomerase type C4 zinc finger.	1.83567e-15
NZ_CP047593.1\|WP_160628871.1\|2315014_2315308_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.31671e-32
NZ_CP047593.1\|WP_160628877.1\|2323521_2324646_+\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	1.85559e-156
NZ_CP047593.1\|WP_160628863.1\|2306547_2307270_+\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	9.01481e-87
NZ_CP047593.1\|WP_160628874.1\|2318306_2321195_-\|peptidase-M16	gnl\|CDD\|223957	COG1026, COG1026, Predicted Zn-dependent peptidases, insulinase-like [General function prediction only].	0
NZ_CP047593.1\|WP_160628880.1\|2328905_2330009_-\|chemotaxis-specific-protein-glutamate-methyltransferase-CheB	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	6.47958e-106
NZ_CP047593.1\|WP_160628869.1\|2313373_2313994_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.04625e-41
NZ_CP047593.1\|WP_160628865.1\|2309544_2310174_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.46796e-108
NZ_CP047593.1\|WP_160628864.1\|2307352_2309533_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	4.95213e-52
NZ_CP047593.1\|WP_160628862.1\|2306346_2306499_+\|small-basic-protein	gnl\|CDD\|275006	TIGR04137, hypothetical_protein, Chlam_Verruc_Plancto small basic protein. Members of this protein family are commonly found next to markers of rRNA processing such as YbeY. They are extremely lineage-restricted, in the Planctomycetes and Chlamydiae/Verrucomicrobia group. Since classification is based on rRNA molecular phylogeny, this provides additional support for a role in rRNA metabolism. This small protein, about 50 amino acids in length, is rich in basic residues, a third line of support for rRNA interaction.	1.3107e-18
NZ_CP047593.1\|WP_160628876.1\|2322913_2323540_+\|HAD-IA-family-hydrolase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	6.66649e-41
NZ_CP047593.1\|WP_160628881.1\|2330025_2332302_-\|response-regulator	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	5.41709e-105
NZ_CP047593.1\|WP_160628879.1\|2326773_2328909_-\|response-regulator	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	1.32682e-115
NZ_CP047593.1\|WP_160628867.1\|2311858_2312716_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.01881e-151
NZ_CP047593.1\|WP_160628872.1\|2317532_2317898_+\|response-regulator	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	1.73579e-23

>NZ_CP047593.1|WP_160628871.1|2315014_2315308_+|CRISPR-associated-endonuclease-Cas2
MLVLVSYDVSTISKPGRRRLARIAKTCLNYGQRVQNSVFECLVDSAQWTALRTELLRLYNPDEDSLRFYFLGKNWEQKLEHHGTKDTPNLENDLLII
>NZ_CP047593.1|WP_160628870.1|2313977_2315000_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKHLNTLYVTTQKAYLHKEGQSVVVNVEQESKLRVPIHTLDGIVCFGVVSMSPFLMHHCAENNVAVSFLSEYGKFLARIQGPVSGNVLLRREQYRVADRSAAASAIARNILLGKIANARAVLRRALRDHGEQPALKTAENRLSQYLRRLQQPMPIEELRGNEGEAAASYFAAFPQLITVKDAAFSFRGRNRRPPTDPVNAMLSFAYTLLVHDCRSALEGVGLDPCVGYLHADRPGRPSLALDLMEEFRALLADRLVLSLINRRQIQPGDFNDSAGGAVSMTDAARKTLLAAWQKRKQEEIIHPYLEEKCKIGLLPHLQAQLLARHLRGDLDAYPPFIWK
>NZ_CP047593.1|WP_160628869.1|2313373_2313994_+|CRISPR-associated-protein-Cas4
MSFSDSDLLPLSALQHYIYCPRQCALIHLEQQWTENRFTAEGRAQHDRVDRPEHETRDGIRYEYAVLLRSLRLGLIGKADVVEFHDDKVFPVEHKRGRPKPTHCDLVQLCAQALCLEEILGVKIPDGAVFYGQPRRRQAVAFTPQLRSETEQATAALHEMLRSGKTPPAEYDKKKCNACSLLETCMPKKRRAVSDYLQEALREKAP
>NZ_CP047593.1|WP_160628868.1|2312729_2313377_+|four-helix-bundle-protein
MPEGFIPKHGGYRKLKSFQVAQLAFDVTVRLVEKYIDRFSRTRDQMVQAGRSGVQNIAEASQASGTSKETELKLTNVARASLEELRLDDEDFLRQRRLAIWEQGHPLRQELVDRRCTTADEVAQWVRESSIRSLGQCGLGGQDGADQAASRTSMLSTKLYPEFSANAALVLVNVACALLSRQLQTLEKAFLKEGGLRERMTRARIAARDEQRRRR
>NZ_CP047593.1|WP_160628867.1|2311858_2312716_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSEPIQNRYEFVLLFDVKNGNPNGDPDGGNLPRIDPETGHGITTDVCIKRKVRNYVELTKEDQAPFNIYVKEKGILTERRSPAYDAVADVKDKSEKISQARAWMCKNFFDVRTFGAVMSAKENNCGQVRGPVQFAFSQSIDPVVPLEASITRMAVETRKEADAQDGDNRTMGRKTYVPYGLYRIHGFISAPLAKQTGFSEDDLELFWEALLNMFDHDRSAARGEMAPQKLIVFKHASELGNAPAQKLFNLVKVAKNCGEKPPRSFADYTMEIGDAPDGVKLIEML
>NZ_CP047593.1|WP_160628866.1|2310170_2311862_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MIFQSLITLYDRLAVENKVPPYGFSIEDIGFVITIDRQGNLIGQPEDLRTKTGPQKYEFRTSKVPYTNQVNVRANAAATTPNFMVDKADYIFGMSASAKKDVHHKSFTELINEVCGDSTDEGVVAVKAFLQTWNPRDSVGLSVWKDMCGLHGKWIAFRLAGDSCFVHERPAVQTLWSGFVQKKEFSQGVSFLDGETHDIQPQYAQFKFGSGASLVSFNEVAYESYGKKKGENAPISVEAEFKSSAALKYLFRSKTQRLRIGDATTVFWAERATPVEGMFGQVLNPSMQDEAAAEDVQKFLETVRKGGMPTDIAADGEIKFYILGLSLNKARLALRFWYVCSVDELMVRLRDHFQCLEMERSDKDIPYPGIWHLLKETARETKDISPVLGGALARSILTGAHYPQNLYQGVLGRIRADQRINYLRASILKAVLTRNYNKEVPMSWDPDRKEIAYLLGGLFAVLEKVQLDALGKVNTTIKDRFFSAASATPSSVFPRLLRLSQHHIGKAEYGTVSDRRIAEIMEHVDSFPAHMGLQDQGLFAIAYYQKKNDLYRKKESKTEGEVA
>NZ_CP047593.1|WP_160628865.1|2309544_2310174_+|type-I-C-CRISPR-associated-protein-Cas5
MSYGIKLRVWGDYALFSRPELKVERVSYDVMTPSAARGILEAIYWKPAIRWVIDRIHVMNPIRFENIRRNEMANRVSVNKKDMEGDRPVCRYIEDDRQQRASLVLRNVEYIIEAHFEFTSDDDRNEGKHLDMFKRRAQKGQCFHRPYFGCREFPVSFEWCDEVPQSPFEDERDFGFMLHDIDFENDRTPRFFRAIMKNGIIDCAQEVVS
>NZ_CP047593.1|WP_160628864.1|2307352_2309533_+|CRISPR-associated-helicase-Cas3'
MPPHTSPVFYAHSNGLDPAHWQPLETHLKNVAEKAADFAQPFGGEEWGRLIGINHDLGKGTLAWQAWLRQVNGISDEFSGHYAGHPAHADAGAQWLFSQSKQAGQLLAYCVAGHHGGLPNWNEGSVRAGLKVRLNQSMPNMKLAKVSSIPAELPFVLDPERLGFQLQFFARMLFSCLVDADYLDTEMFIDGEKARWRSGYPKLDELSKCFWMRFNALREKVDIASPVNRQRERVLRDCLSAAGNEPGLFSLTVPTGGGKTLASLAFALKHAKKYEKRRIIYVIPFTSIIEQNAAVFRDMLSKDAVLEHHCNFIPDDSDWKTRLASENWDAPVVITTNVQFFNSFYANKPSKCRKLHNVSDSVVIFDEVQAVPVEKLKPCLEIIKELSSGYGVSSVLCTATQPAVEYSDQFQSGLQNVREIVGDVAELFSSLKRTEESFVGVLEVGELAGRLSNENQVLCIVNTRKQALDVFKALPESEGSIHLSALMHPDHRTKTLAEVRQRLDDGLPCRVVSTQLIEAGVDVDFPCVYRAVSGIDSIAQAAGRCNRNGKYQTPRPVCVFEFPEDASCAFFRQAAQSAAKLFDRYSGRLTVPECVREYFSDYFWKNEQRMDDGETLQRCLRAQTLEISFRDIAEFQMIKTATIPIIVALEDEALELVHALDFAEHSGGILRRLQKYTVQVYSYQFDEICDWLEEPVPGVFVLKSEELYSHETGLQCNPPQGQAFFG
>NZ_CP047593.1|WP_160628863.1|2306547_2307270_+|pseudouridine-synthase
MMIRLQKYLAECGVASRRASEKLIVDGQVSVDGCVVTELGTKVDPATQKVVCNGRPVSREEKVWVMLNKPTGVICTSDDPEGRERVIDLVPDLAGRLYTVGRLDVMSEGLILLTNDGELAHRLMHPRHHVEKKYQVWIDRELSKQDIARMLKGLNCRGEMLKVLRVEPLKRMIASQPGYTLTLGEGRNRHIRRMMEALDCKVVRLLRVSVGPLRLEKLRSGEYRELAPWELEDLRKAVGL
>NZ_CP047593.1|WP_160628862.1|2306346_2306499_+|small-basic-protein
MTMHSSLKNAAKIEIQRNVLKRFERVDKLKEEGRWKEGDRGFGLPKTKPE
>NZ_CP047593.1|WP_160628872.1|2317532_2317898_+|response-regulator
MADILVVDDELDMIMMLKAALERQGHSVITASNGVEALGVLQERDVHLVVTDMHMPELDGFDLIPAVLEQFPGQRILAMSGVGQWEPKDNLNVARDLGAVCCVEKPFNLDDFYGCVEELVG
>NZ_CP047593.1|WP_160628873.1|2317919_2318306_-|hypothetical-protein
MHTASASTYKIVQKENYAEVHASGKLSPWDFLEIIYRLHRADPKKEKPDLWVFDKNVDFPLHSFPRLAQGVMNLLIRSAIKEGCRSAILTADEFQKAKAELYCAEAAFLPFEVRAFTDRSQALAWLLN
>NZ_CP047593.1|WP_160628874.1|2318306_2321195_-|peptidase-M16
METQFKLIRETAVAELNGIVKEYRHEPTGAEYISVENNDNNKVFGITFRTPPSDSTGVAHILEHTVLCGSRKYPLKDPFVQLLKGSLQTFLNAMTYPDKTVYPVASQNVQDFYNLVDVYLDAVFFPRITPAFFRQEGWHYELEGPDAPLTCKGVVYNEMKGAYSSPDSLLLERSQQSLFPDTTYSLDSGGNPSVIPTLTYGEFREFHETWYHPSNARIFFYGNDDPAKRLEILEEYLGGFQSLENPPDSSIPLQPSFKKPALIKETFAAGDEDSKAFVTVNWALPEGSLHFALTVLDHILTGTSGSPLRKALIESGLGEDIAGFGLETHLRQPAYSIGMKGVDTPNLGKVEKLIFQTLEKLVQDGIDPGDIDAALNSFEFDLRENNRGSCPQGLSVMLTMLETWLYDWDPLVLAAYEKPLAGLKQALADNPRYFEELIENSLLKNPHRSVVRLIPDAFKAEREDAEDAAVMQAVKDAMIPDEIKRTMTAAERLLDMQKAPDSPAAIKTIPLLCRNDLRKEVRVIPREIETFDNATVLFHDLFTGGIAYIDIGLDLHVLDTDDLPWVSLLGSMLLEMGTQKESFASLSQRIARKTGGIYAAPVHAVPEQSPESVSRLFLRGKCMANRIEDLFSIISDILFLPAFDNIKRFKEVLLEQKAEMESGLVPNGHTAVLSRLKAHYHEASRAAEAMGGIDALFFHREIEQRVDDEWAAILERIETILKKMLAGGLVVNVTADNRDRAVIFQSLEKFLCAFPTMGNNLSNPWAFKADLPKSEALTAPSRVNYVGSAINLFDNHYQHDGSALVVTKYLRTAWLWEKIRVQGGAYGALCTFEPCCGVFAFASYRDPNLADTLEVYAQTGEFLKNLDIDQDELSRALIGAIGGIDTYRLPDAKGYCDTLRWLTGITDEKRQQRRNEILATTVEHFRQFGEFLDMHDAVTAVLGSKESIELSNVPFERHLKVL
>NZ_CP047593.1|WP_160628875.1|2321608_2322850_-|hypothetical-protein
MFGKKPPQIRHVGLFAALTVAAMALFFNLYEPWQAIGPERIVDGSFESPDCAAEWTGWDERLARLAHGDGYRNSTGVILEATPRHHSTLRKTIPDIKNIPAFKVSVRAKAEKVHPGTEGYHLPRTIFFYRNSKGKGMYNHSHTVFGLKKDTRWKRYSSIFPVPENSMDGRLQLQNLGSSGTLYVDDVSVIPVSPRPTAPFFQVLFILLWIGAFSACLLALSPWTSRTGTATLLCATGIIAGVLLPGEFLNRSILRTADMFQKTVQRITPPKPETPSPAQTDKIPAAESEPRPEEKPAPHQPKPPAETPADTFVRHTYITGHFSLFLILAALSMLTWAPAHKPNRIIFAVLAGLTLFAASTEVLQFLTPDRKAGLDDLAVDFSGILIAVALTTLLTIPRRIRRTAKSAGHPKNT
>NZ_CP047593.1|WP_160628876.1|2322913_2323540_+|HAD-IA-family-hydrolase
MKPDLNQYKAFIFDLDGTLIDSEKYHADGFSQAVEALTGYQITDEERREFFESHTNTFAPILAKRHGLTFDVAEVLRRKRRHVEKHFRTDVFPQAIHFIRKWRARKRLALASNSPKSFVRNALVEGRMIDLFETVCTADDVEHRKPDPEMYLLTLEWLKLAPEETIVFEDSPAGVHAAQAAGCPVVMMENGSGRTVDGVEKFTWRELS
>NZ_CP047593.1|WP_160628877.1|2323521_2324646_+|glycine-cleavage-system-aminomethyltransferase-GcvT
MEGTFLKHTPLHEEHITLGARMAEFGGWDMPIQYEGILAEHQHTRTQTGLFDICHMGEFELTGPTAAADLENLLTMKVSTLAVGQCRYGFMLNEEGGVIDDLTCYCLDDARYMLVVNAATRDGDAEWIQNHLSPETVFTDRSNELAKLDVQGPQARTDLEKVFGSIPDIGYFRAEFFRGLEKLLGAGSACLDTEMLISRTGYTGELGYELYFPASEAVRIWRALLGNENIKPIGLGARDTLRLEMGYSLYGHELSTDRTPAGVSRGMFIKKDQDFIGRDAVMRDLETPAELLVALEFESKRAARAHDKVFLRGLEMGEVTSGSVSPSLGKAVALALVKADAAGLGTVLDVEIRGKQFPATVVNLPFYPNGTARG
>NZ_CP047593.1|WP_160628878.1|2324780_2326805_+|DUF255-domain-containing-protein
MPKQTNQLIHEKSPYLLQHAHNPVDWFPWGDEAFRKAREEDKPVFLSIGYATCHWCHVMAHESFENPEAAAALNEAFVCVKVDREERPDIDEIYMTVCQMLTRSGGWPLTVVMTPEKQPFFAGTYIPLESRFGRTGLLELVPRLSDAWKNQRETVVKSAAELTAALAAPEEGATVLDEDLLERTFEDSEETFDGQHGGFGSAPKFPSPHRLVFLIRQNPEAARPMVDKTLTAMHRGGVWDQIGFGMHRYSTDREWLVPHFEKMLYDQALTALACIEAFEAYGDEPYRRMAEEIFEYVLRDMTAPEGGFYSAEDADSEGIEGKFYVWSLDELRELLDSDELAMVVKIFHVQADGNFRDESSRRKTGDNILHRSGPENVSEEIRSKLFAAREKRIHPLKDTKVLADWNGLMIAALAKAGRVFDDPQYAEAAQRAADFVWSELQDNGRLTHRWREGQAAVPGQLTDYAFMIFGLLELYETSFDFQTLEKALTLNDAVLAQFRDPRSGGFYLTADDAEPLIVRPKSILDGALPSGNSIQVMNLLKLARMTGRIEFEKTAARTARAFASTINRIPSAFTQALQAIQFVKSGGIDVVIVGDRGLPATQALIQAVRSARQPNCTVLLKTPGLETIAPFTADMRPVNGAPAVYICRSFACERPFTDPEAVRDAMSEMHQQTV
>NZ_CP047593.1|WP_160628879.1|2326773_2328909_-|response-regulator
MKNELQKVLIVEDSPTQALMLENILQQESFVTQLARNGEEALNVLPDFRPTLVISDIIMPGMDGYDLCRKIKGNPDTSTIPVILLTSLSDPYDVIQGLQCGADNFITKPYQQEFLLSRIQYILINQELRKTMPEESGVQIYFGGEKISVTSSRIQIVDLLFSSFENAVQKNQELKAVNRELEETQAQLEQAMKAANAANEAKSEFLANMSHDIRTPMNGIIGMSDLLRDTGLSPIQHEYLDLIQQSAGSLLSLINDILDFSKIEAGKLDITKKPFNLRDYVGLNLKTLAVQADQKDVELAGRVEPDVPDIIVGDPHRLGQILTNLIGNAIKFTDAGEIIVRIHSHETENELTELHCSVQDTGCGIPQDQCDTIFDAFSQIEGDNEHIKQGTGLGLAISAKLVEMMGGKIWLESTPGQGSTFHFTILVGTLDTESKRNGHLESLKVLAVDDNPTALSFLQQMLEEADADVTPLQDPSGLIDQLQREAETGKPFDILILDTKVPGADMFSQIREIIDRNLPGTIIPALPAATLREHSALCKELELKHRLTKPLYDTNLLAKLGSIKAGIAKEDVLEDRKPSVIPETRVLNVLVAEDNLVNQMVVTRMLTSLGHKPTITANGQEAVEALEKNDFDLVLMDVKMPIMDGFAATRAIRNSSTVKNPKIPIIALTANAMKGDKDLCIDAGMNSYATKPLQRNCLEEAIRQFVDASHS
>NZ_CP047593.1|WP_160628880.1|2328905_2330009_-|chemotaxis-specific-protein-glutamate-methyltransferase-CheB
MIRILVVDDSETVRKLMTYELDRQEGMTVVGIASNGMDAVRKAAKLKPDVITMDVKMPIMDGLEATREIMCTQACPVVIVSQYWDQDNKQKVFEALAAGAIAVVNKPAGPGHPEYETSLSHLFKQIRMMSEVKVVTRRRSKPDPEKVPATVLKKSGVSCPPACRPDCPVSKRNGKLVVIGASTGGPVVLRQIFERLPAPYPLPILVVQHIAHGFLTGLVDWLGTATGHHILIAEQGMIPEPGKIYFAPDDRHMGLDPDGRIVLSKDPKEYSLRPAVSYLFRTAARHVGNRTIGILLTGMGSDGAAELKILKDTGAATVIQNQESCVVFGMPGEAFKLNAARHALPPEEISEFLSLAISESRPMKDPA
>NZ_CP047593.1|WP_160628881.1|2330025_2332302_-|response-regulator
MEMDKAFLKKLRAAFAVEAQEHLEEIATGLRSLKSADEEQRAHWVEVIFRETHSLKGAARAVNKPGIETLCQAAEGLFAKLQKEQTAPTETAIDLLYQVLDLIEADLKNPETLSKQEIDAVVSALKRLQDEKNGSSPTEKKPVAKPPAPAPEEKNRKEPTPVSVTPNTLRVSQDRLEQIMRESEELLSLKLSTEHRAGELQKLSRKISEWKKTWSNIMPVLRQLTQAAEKNSGLSEKSLRPKIEQLQHTLESIKDEIDPLELQTGTILQNARNDASSVARFVDSLHGNMRELMMMPFSSSLSMMHKVVRDLSNEQNKPVELEITGGNVEADRRILEGMKDPFLHLIRNSIDHGIESPEERAAKNKPEKGTVSISIAQIDSGKVHITVEDDGRGLDLNKLRKTLISQQIVSPEDAEKMTEEQLASSIFFSGLSTSEQVTSISGRGIGTSVVREKVESLGGSVSVTPRKPWGTSFSIILPVGLATFRGILVQSGDSQFVLPTPSVERMLRVPLNDIKTVEGRETITVADQALPLETLSVLLEQPSPVRSADKETLLALVICAGSQRFALEVDEVLREQEVLVKGLGPQLMRVRNVSGIAVLGTGELAPILNVHDLIKSSIVGGSRPAVAAAAAPLPASSRKKSVMVAEDSITSRMLLKNVLESSGYHVATAVDGAAAFAALKTGEFDALVSDVDMPRMNGFVLTERVRADRKLAELPVVLVTSLASQEDKERGIEAGASAYIVKSSFDQSNLVSVLNRLI

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Crispr_ID: NZ_CP047593_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047593_2

3657650-3658939

Consensus_repeat	Method
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CRISPRCasFinder
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CRT
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	PILER-CR

19 spacers

DEDDh,cas2,cas1,cas9

The CRISPR arrays of NZ_CP047593_2

>merge|NZ_CP047593|2|3657650-3658939|CRISPRCasFinder,CRT,PILER-CR
GGCGGAAATCATCTCGAAGAACTGTCAATCCACAACTACACATATGACGCCACGAATACCGCACCGTTGGAAATCATCTCGAAGAACTGTCAATCCACAACCTGGATGTTTGGATTGATGAAACAGGTCCTGTTGGAAATCATCTCGAAGAACTGTCAATCCACAACAGTACCACACCGATAGCGAGGACGGTAAAAGTTGGAAATCATCTCGAAGAACTGTCAATCCACAACGACGAGCAGCTTTCCGCGCTGAAGTCTCAGGGTTGGAAATCATCTCGAAGAACTGTCAATCCACAACTTGCCCATGCGCTGATTAAATCCACCACCGGTTGGAAATCATCTCGAAGAACTGTCAATCCACAACCGGGCGCGGAATTATAAAGACGGCGTTTTAGTTGGAAATCATCTCGAAGAACTGTCAATCCACAACGTCTCGCAACCGAACGAATCACCGGTGACCGTTGGAAATCATCTCGAAGAACTGTCAATCCACAACTCTGTTCAGGCTCTTTATCAGCGAGTTCGCGTTGGAAATCATCTCGAAGAACTGTCAATCCACAACTGGAAACGATGACCTAAACACAGCACATGCGTTGGAAATCATCTCGAAGAACTGTCAATCCACAACTAATGGTTACTCTAACGTCTGGACCGTTGCGTTGGAAATCATCTCGAAGAACTGTCAATCCACAACCCGGAAATTGTTCTTTTTGGTGTTGGGAATGTTGGAAATCATCTCGAAGAACTGTCAATCCACAACAGGATGGATTCAAACCGTCTTGGAAACAAAGTTGGAAATCATCTCGAAGAACTGTCAATCCACAACCGCCTTACAGAGATCGCAAACCTGACATGGGTTGGAAATCATCTCGAAGAACTGTCAATCCACAACCGAAAGCAGGCCGCGCTAAACAGCGCAAGCGTTGGAAATCATCTCGAAGAACTGTCAATCCACAACCCTTTACCGGTACTCCGTTCATATGCCTCAGTTGGAAATCATCTCGAAGAACTGTCAATCCACAACCGGCCGGTGAACTGGTGATTGAACAGTCCTGTTGGAAATCATCTCGAAGAACTGTCAATCCACAACGTCAACCGGCAGCTCATGCCAGTGGATATTGTTGGAAATCATCTCGAAGAACTGTCAATCCACAACCCTGAATATGGCCCAAGAAACCGGCGAACCGTTGGAAATCATCTCGAAGAACTGTCAATCCACAACCCAAGAATGCTTGTAGGCCATCCTGTTTTAGTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC

>NZ_CP047593|2|2|3657650-3658939|CRISPRCasFinder
GGCGGAAATCATCTCGAAGAACTGTCAATCCACAAC	TACACATATGACGCCACGAATACCGCACC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CTGGATGTTTGGATTGATGAAACAGGTCCT
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	AGTACCACACCGATAGCGAGGACGGTAAAA
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	GACGAGCAGCTTTCCGCGCTGAAGTCTCAGG
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	TTGCCCATGCGCTGATTAAATCCACCACCG
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CGGGCGCGGAATTATAAAGACGGCGTTTTA
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	GTCTCGCAACCGAACGAATCACCGGTGACC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	TCTGTTCAGGCTCTTTATCAGCGAGTTCGC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	TGGAAACGATGACCTAAACACAGCACATGC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	TAATGGTTACTCTAACGTCTGGACCGTTGC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CCGGAAATTGTTCTTTTTGGTGTTGGGAAT
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	AGGATGGATTCAAACCGTCTTGGAAACAAA
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CGCCTTACAGAGATCGCAAACCTGACATGG
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CGAAAGCAGGCCGCGCTAAACAGCGCAAGC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CCTTTACCGGTACTCCGTTCATATGCCTCA
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CGGCCGGTGAACTGGTGATTGAACAGTCCT
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	GTCAACCGGCAGCTCATGCCAGTGGATATT
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CCTGAATATGGCCCAAGAAACCGGCGAACC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CCAAGAATGCTTGTAGGCCATCCTGTTTTA
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC

>NZ_CP047593|2|2|3657650-3658939|CRT
GGCGGAAATCATCTCGAAGAACTGTCAATCCACAAC	TACACATATGACGCCACGAATACCGCACC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CTGGATGTTTGGATTGATGAAACAGGTCCT
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	AGTACCACACCGATAGCGAGGACGGTAAAA
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	GACGAGCAGCTTTCCGCGCTGAAGTCTCAGG
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	TTGCCCATGCGCTGATTAAATCCACCACCG
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CGGGCGCGGAATTATAAAGACGGCGTTTTA
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	GTCTCGCAACCGAACGAATCACCGGTGACC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	TCTGTTCAGGCTCTTTATCAGCGAGTTCGC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	TGGAAACGATGACCTAAACACAGCACATGC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	TAATGGTTACTCTAACGTCTGGACCGTTGC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CCGGAAATTGTTCTTTTTGGTGTTGGGAAT
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	AGGATGGATTCAAACCGTCTTGGAAACAAA
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CGCCTTACAGAGATCGCAAACCTGACATGG
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CGAAAGCAGGCCGCGCTAAACAGCGCAAGC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CCTTTACCGGTACTCCGTTCATATGCCTCA
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CGGCCGGTGAACTGGTGATTGAACAGTCCT
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	GTCAACCGGCAGCTCATGCCAGTGGATATT
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CCTGAATATGGCCCAAGAAACCGGCGAACC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CCAAGAATGCTTGTAGGCCATCCTGTTTTA
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC

>NZ_CP047593|2|2|3657715-3658939|PILER-CR
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CTGGATGTTTGGATTGATGAAACAGGTCCT
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	AGTACCACACCGATAGCGAGGACGGTAAAA
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	GACGAGCAGCTTTCCGCGCTGAAGTCTCAGG
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	TTGCCCATGCGCTGATTAAATCCACCACCG
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CGGGCGCGGAATTATAAAGACGGCGTTTTA
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	GTCTCGCAACCGAACGAATCACCGGTGACC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	TCTGTTCAGGCTCTTTATCAGCGAGTTCGC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	TGGAAACGATGACCTAAACACAGCACATGC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	TAATGGTTACTCTAACGTCTGGACCGTTGC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CCGGAAATTGTTCTTTTTGGTGTTGGGAAT
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	AGGATGGATTCAAACCGTCTTGGAAACAAA
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CGCCTTACAGAGATCGCAAACCTGACATGG
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CGAAAGCAGGCCGCGCTAAACAGCGCAAGC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CCTTTACCGGTACTCCGTTCATATGCCTCA
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CGGCCGGTGAACTGGTGATTGAACAGTCCT
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	GTCAACCGGCAGCTCATGCCAGTGGATATT
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CCTGAATATGGCCCAAGAAACCGGCGAACC
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC	CCAAGAATGCTTGTAGGCCATCCTGTTTTA
GTTGGAAATCATCTCGAAGAACTGTCAATCCACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047593.1\|WP_160629865.1\|3659390_3660314_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP047593.1\|WP_160629860.1\|3652459_3654583_+\|tail-specific-protease	unknown	unknown	gnl\|CDD\|236873
NZ_CP047593.1\|WP_160629873.1\|3672775_3674065_-\|class-II-aldolase/adducin-family-protein	unknown	unknown	gnl\|CDD\|376358
NZ_CP047593.1\|WP_160629867.1\|3665057_3665936_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376546
NZ_CP047593.1\|WP_160629857.1\|3648519_3649773_-\|valine--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|236517
NZ_CP047593.1\|WP_160629870.1\|3667464_3669042_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237436
NZ_CP047593.1\|WP_160629863.1\|3657252_3657576_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047593.1\|WP_160629871.1\|3669102_3671154_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP047593.1\|WP_160629856.1\|3647430_3648519_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224525
NZ_CP047593.1\|WP_160629859.1\|3650717_3652328_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
NZ_CP047593.1\|WP_160629858.1\|3650059_3650623_-\|hypothetical-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NZ_CP047593.1\|WP_160629861.1\|3654544_3655681_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|366370
NZ_CP047593.1\|WP_160629854.1\|3643279_3645004_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340890
NZ_CP047593.1\|WP_160629868.1\|3665938_3666745_-\|sulfur-carrier-protein-ThiS-adenylyltransferase-ThiF	unknown	unknown	gnl\|CDD\|236320
NZ_CP047593.1\|WP_160629862.1\|3655698_3657198_-\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|237738
NZ_CP047593.1\|WP_160629872.1\|3671122_3672538_+\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|223358
NZ_CP047593.1\|WP_160629869.1\|3666749_3667253_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047593.1\|WP_160629855.1\|3645000_3647217_-\|family-78-glycoside-hydrolase-catalytic-domain	unknown	unknown	gnl\|CDD\|379971
NZ_CP047593.1\|WP_160629866.1\|3660316_3664747_-\|hypothetical-protein	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
NZ_CP047593.1\|WP_160629864.1\|3659071_3659410_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043

Protein	Function_ID	Function_description	E-value
NZ_CP047593.1\|WP_160629865.1\|3659390_3660314_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.28396e-101
NZ_CP047593.1\|WP_160629860.1\|3652459_3654583_+\|tail-specific-protease	gnl\|CDD\|236873	PRK11186, PRK11186, carboxy terminal-processing peptidase.	4.27365e-170
NZ_CP047593.1\|WP_160629873.1\|3672775_3674065_-\|class-II-aldolase/adducin-family-protein	gnl\|CDD\|376358	pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain. This family includes class II aldolases and adducins which have not been ascribed any enzymatic function.	2.24833e-50
NZ_CP047593.1\|WP_160629867.1\|3665057_3665936_+\|hypothetical-protein	gnl\|CDD\|376546	pfam01430, HSP33, Hsp33 protein. Hsp33 is a molecular chaperone, distinguished from all other known chaperones by its mode of functional regulation. Its activity is redox regulated. Hsp33 is a cytoplasmically localized protein with highly reactive cysteines that respond quickly to changes in the redox environment. Oxidising conditions like H2O2 cause disulfide bonds to form in Hsp33, a process that leads to the activation of its chaperone function.	5.18531e-47
NZ_CP047593.1\|WP_160629857.1\|3648519_3649773_-\|valine--pyruvate-transaminase	gnl\|CDD\|236517	PRK09440, avtA, valine--pyruvate transaminase; Provisional.	0
NZ_CP047593.1\|WP_160629870.1\|3667464_3669042_+\|hypothetical-protein	gnl\|CDD\|237436	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional.	1.41081e-143
NZ_CP047593.1\|WP_160629871.1\|3669102_3671154_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_CP047593.1\|WP_160629856.1\|3647430_3648519_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	5.77579e-80
NZ_CP047593.1\|WP_160629859.1\|3650717_3652328_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
NZ_CP047593.1\|WP_160629858.1\|3650059_3650623_-\|hypothetical-protein	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	2.19831e-30
NZ_CP047593.1\|WP_160629861.1\|3654544_3655681_-\|mechanosensitive-ion-channel	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	2.75961e-46
NZ_CP047593.1\|WP_160629854.1\|3643279_3645004_-\|MFS-transporter	gnl\|CDD\|340890	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily. This family is composed of Salmonella enterica Na+/melibiose symporter MelB, Major Facilitator Superfamily domain-containing proteins, MFSD2 and MFSD12, and other sugar transporters. MelB catalyzes the electrogenic symport of galactosides with Na+, Li+ or H+. The MFSD2 subfamily is composed of two vertebrate members, MFSD2A and MFSD2B. MFSD2A is more commonly called sodium-dependent lysophosphatidylcholine symporter 1 (NLS1). It is an LPC symporter that plays an essential role for blood-brain barrier formation and function. Inactivating mutations in MFSD2A cause a lethal microcephaly syndrome. MFSD2B is a potential risk or protect factor in the prognosis of lung adenocarcinoma. MelB-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.51742e-74
NZ_CP047593.1\|WP_160629868.1\|3665938_3666745_-\|sulfur-carrier-protein-ThiS-adenylyltransferase-ThiF	gnl\|CDD\|236320	PRK08644, PRK08644, sulfur carrier protein ThiS adenylyltransferase ThiF.	1.53251e-105
NZ_CP047593.1\|WP_160629862.1\|3655698_3657198_-\|4-alpha-glucanotransferase	gnl\|CDD\|237738	PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional.	0
NZ_CP047593.1\|WP_160629872.1\|3671122_3672538_+\|NAD-dependent-malic-enzyme	gnl\|CDD\|223358	COG0281, SfcA, Malic enzyme [Energy production and conversion].	0
NZ_CP047593.1\|WP_160629855.1\|3645000_3647217_-\|family-78-glycoside-hydrolase-catalytic-domain	gnl\|CDD\|379971	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.	3.33867e-119
NZ_CP047593.1\|WP_160629866.1\|3660316_3664747_-\|hypothetical-protein	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	2.27203e-35
NZ_CP047593.1\|WP_160629864.1\|3659071_3659410_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.50118e-24

>NZ_CP047593.1|WP_160629863.1|3657252_3657576_-|hypothetical-protein
MDNTDQLGFDFLSVPADGLEMPHDPQERGYQFFVKDREDAMARLKKRFNVMLNEPVRLKLFGWDQEFTGKLKLNTLLIPESKKDDVPLRLGRVKFDLRDIEYCFCTE
>NZ_CP047593.1|WP_160629862.1|3655698_3657198_-|4-alpha-glucanotransferase
MSSERKSGILLHITSLPGKWGMGELGPEARKFGEFLAACGQKLWQILPVNPIGYGYSAYSSSSAFAGNPLLISFDELIEEGLLTKRHLSRFPEFDPHKIDFPAVIDARVKILNGVCERFDDSADFKAFCKKESYWLDDYALFVTIRSAQNGAPWTDWPEALRDRDVHTLEKFGKQHVEEIRRHRVLQYLFARHWKKMREFFQTLEIEIIGDVPIFVAADSADVWAHRELFQLNKDGSSLVVAGVPPDYFSETGQRWGNPLYDWEVHRKTKYAWWTARMRRTFELVDKVRIDHFRGFESYWEIPAKEPTAIHGEWVQGPGVGFFQTLESNLRKVPMFGKTFQLAEHVIAEDLGIITDAVDELREACGFPGMTVLQFRFSPDDMRKDGYRPEGDEDRVVYTGTHDNETTRKWFKALDEKTSHEVRVYLHTHGDHIHRDLAELAMRSPARWAILPLQDVLGRGRRMNMPGTTTGNWDWRVSEDMITTGIAEFLKEMTERNGR
>NZ_CP047593.1|WP_160629861.1|3654544_3655681_-|mechanosensitive-ion-channel
MAVTVTNTVEQIIVKTEEFVGGGGWNYFWMILIVLGGFILGRLLKVLMEKAASKLNLGVDAFRMAWLSLISRTIMFPTAGLGICFALKVWVLPEQLGGLRDDVVGVLLTVIVAYIIYQGIELVNFWMKKLTAQTHTTLDDMMVPLVRKTLRILTVVLGLVQVAQQLSDKPITSILAGLGVGGLAVALAAQDTIKNFFGSLVIFADHPFQLGDRIVANGEDGIVEEVGMRSTRIRTLDGHLVTVPNGELANMMVRNISKRPYIKRVANITLTYDTPPEKVERAMEIIREFLDAHNEKMHPDMPNRVFFNNFNDCSLNILVIYWFAPPDYWAFMEFDQQFNLAVLKSFNEESIDFAFPTRTLYLAGDPSRPLNIGSDRSA
>NZ_CP047593.1|WP_160629860.1|3652459_3654583_+|tail-specific-protease
MYNLKHYLLLPLIPALLCSCAEENKPEQNTSAPVVEKIPLPIKRIASRVADRLPHTHLNRMPFNDSIATNALMLFIDSFDFDHSYFLASDIEEFQQSATQLDDQVRNGDISFSSLIVDRFKDRVTNRVAYVNQLLDEGFDLSIDESYRWKRDDAPWPKGEAAWDELWRKKIKNEYVGRIAMKEIPEPEAKKADTKDLEEENLTEDEMLEPDEFIRERYKQFQLMVQNNFDEEAVLERYLSAFTQSYDPHSAYLSPRGVEDFDIHMSLSLVGIGAMLRSEDGAAEITKIIPGGPAEADGRLKPGDKIIAVAQGKEEPVSILYWPLSKAVRLIRGEKGTEVVLTIIPAEDKTGTRTKKLALIRDEVKLEEQAAKSEVYDNIGTNALPVRLGVITLPEFYADFAGARNGKDDVRRSSVDVRNILNQFATNDVDGVILDLRNDGGGSLTEAIDIAGQFIPLGPVVQVREQRGVAVLPDGDPTTVYAGPLIVLVNRTSASASEIVAAALQDYGRAVIVGDSKTHGKGTVQTVLPLSRLSDDLGSLKVTTAGFYRIAGGSTQLRGVTPDIVLPSLFDSLEIGEEFLPNALPWSQVQSAYYRPWRNSVKPLLPELQIRSQERMRDNPEFRTFMARRERLRERMETPTVSLKLSKRVDEILAEQELENLQDSMVETDNGEDKKEEDPILDEALRILTDLTELSSGGTVAADIQRP
>NZ_CP047593.1|WP_160629859.1|3650717_3652328_-|glucose-6-phosphate-isomerase
MKLIDRPEWKELSDHWKVIEPMHLRELFADDEKRAETFSMTACDLLIDCSKNRVTAETMEKLAALAEACGLRGKIEAMFTGEKINQTEDRAVLHTALRAPREAQVFVDGEDVIPGVHEVLDRMEAFCSKVRSGEWKGYTGKSIKNIVNIGIGGSDLGPVMAYEALKPYTQRDLKVLFVSNVDGTHIAEAVRDLDAEETLFIVASKTFTTQETMTNAQSAKAWALETLKDEAAIARHFVAVSTNADEVSKFGIDTVNMFGFWDWVGGRYSLTSAIGLPVMLAIGPENFRAMLSGYHAMDSHFRTAPFSENAPVILGLLGIWYNNFFDAATHAILPYDQYLSHFAAYFQQGDMESNGKYITQNGERVEWQTGPVIWGEPGTNGQHAFYQLIHQGTKLIPCDFIGFCKSQNPVGDHHVKLMANFFAQTEALAFGKTKEALEAEGTPSELIPHKTFEGNRPTNSIMAEKLTPEVLGQLIALYEHKIFVQGMIWDIFSFDQWGVQLGKILASAILPELESDSELGHDSSTNKLIEYFRANK
>NZ_CP047593.1|WP_160629858.1|3650059_3650623_-|hypothetical-protein
MLICETTLTVLDFETTGSVPGFDTEPWQIGAVALKNGRIAPDSAFESLIRVDANRPFNAYAPGDHHKRRDEIAAAPEVSRVWKTMESRVTGRPLVAHNVAVEKKFLRQMAPMHRFGPWVDTLKLARQAWPGAPSHKLEDLIAGLNLMPRVCELCPRGRPHDALYDAVACAVLLEHLLVQPGWGNLEV
>NZ_CP047593.1|WP_160629857.1|3648519_3649773_-|valine--pyruvate-transaminase
MKLSKFGQKFTRGAGITQLMDDLGAAMAGGDMLMLGGGNPAHIPEVQKIFRERMESILAESGAFESMIGNYDGSRGNAAFVDALAEMLRESFGWDIGPENIALTNGSQSAFFSLFNLFAGEMPDGSKKKILFPLTPEYIGYADAGLSDDFFAAKRPSIELLGDRLFKYHVNFQTLEIGDEIGAICVSRPTNPTGNMLTDDELRHLDMLARERDIPLIIDNAYGTPFPNIIYTEAQPLWNENTVVCMSLSKFGLPNLRTGIVVARKEIAAAIGDINGIMCLAPGGLGARFAMDLVRSKEIMRVSRDLIGPFYQRKAQQVLEWFCEEIPESVPFRIHKPEGAIFLWLWFEGLPGGSAALYERLKARNTLVIPGHHFFPGLENDDWAHKNECIRVTYAQDDAVVRQGVQVIAEEVGRLYG
>NZ_CP047593.1|WP_160629856.1|3647430_3648519_+|substrate-binding-domain-containing-protein
MAVKGKKRKRTSTRVTLEDIARYCDVSKATVSRVLNDHLNEFPVSDEMITRVKNAATQLGYRPNRLARAIRNQRTNLIGLSFIHIDYQHLSTDQIAYENQVMGQFSNIILSHPGFKDYDLVIHDRIESADHPLKERDFKSDLLEGMIYLTPSDTHREFLDIASKEFPIVLLGQTEESEKKVPCIDINNRKMAQKAVEHLIETGCRNILILIPEKLQHISCIQDRIKGYNDALTKNGLPKPEEFVRTVRSLKENVEAFFKQLRCLDEIDAIFCPSDELAALCIAPLQSLGKKIPEDISLCGFDDMPAAQHTTPPITTVRRPVDKQAHAAIDLLLKILKKETPYEPGFHEIETELIIRKSTVKD
>NZ_CP047593.1|WP_160629855.1|3645000_3647217_-|family-78-glycoside-hydrolase-catalytic-domain
MSLKERSFEKWENDWIRLRWGDGAPLLRMDFDVCGAVRAATIHATALGVFELRLNGDSVDDIHLPPGWTDYRKRVYVHSFDVSDRIVPGKNVLGALVAPGWFAGFFGPFGDRGYYGHDAWFSCELVLEYEDGTFETIRTSPEWKGALGPISQADLLMGETYDSRKEISGWDTPDFDGSKWKPVSVLREGDERLPESIEPYPGEPIRTIAELPAQSVSEPSPGVFVFDLGQNMVGVARLKIDVPAGTEIVLRHGEMLNDDGSVYTENLRSAKAIDRYIASGGEEIWQPRFTFHGFRYVQVEGLPAGCDPALDTICGVVWMSGLKETASFECSSEKVNRLFSNIQWGFRGNYLDVPTDCPQRDERLGWTGDTQMFIRSATYLADVQSFFKKWLVDLHDAQHPDGGYPDVAPFMGRLGYASAAWADAGIICPYVLWQAYGDTEFIRPWWSQMKNFMALICTDENRHNGPNAQSFGDWLHFNSETPTRLIGLAYRAYDARLMSEMAAAIGEENDRIFFEAEAEKSRDLFRCEFFQGSEIAVKTQTACALAIAMDLLDGEDLEKTKDCLFQGLEEHNVYLTTGFVGTGYLCPALTKAGRCDLAVQLLLNEGHPSWLYEVNNGATTIWERWNSWTEEGGFGDVGMNSFNHYAFGAVCEWMFESLAGIRPASPGFQTLEIVPCFTDRLDYVKASYDSVQGRISNQWKKTSSGWTMELETPVPATVILPNGTSQVEKGRHIFEVPA
>NZ_CP047593.1|WP_160629854.1|3643279_3645004_-|MFS-transporter
MMQKHSVHKAVPKDRVPMSVRIGWGCGGVADNFIMNVLNMIFLVLYVQYFKMPPVLAGAALAIPRFVDAVTDPMIGNLSDNTRSRWGRRRPYMMAGAILSAVLLPLFWLPPSGAENPVWYQNPAFIFATVLGVVFAVTYTLFVVPYTALGYELTPDYDEKTRVLAWRMYIGLLASLTVPWAYKLCQLDTFPNEAVGAVWVSIGFGIVIIITGLIPVLVCREREDVQKQETSPFLQATKATLTNKAFLVLLVAYIIIIVGLFSAANLGAFVNIYYICGGNKDFGGLLVAVAGSLGAIISYFSMFLVTAVSVRTGKKTGMILGLILALLGVIGAWFAMDPRWPLAQLLTTVVACMGLQGCWLMVSSMVADICDEDELKTGLRREGMFGAINGFALKAALSFTALIGGWLLSYSGFDAEQIDQFEARTIAEVIEPARELNLGGAAFEKAGRRFVEISDDKSSMEGSKWTSLWRLLKGEKVFFRWYDFEDAVNTMLAGIPAAQTPELKAYVETVQDGFLTDFAEQKRVALLMKKLVIGFQAAGLMIAIIIFAFYPITRERAEETRRKLDERKSHETNG
>NZ_CP047593.1|WP_160629864.1|3659071_3659410_-|CRISPR-associated-endonuclease-Cas2
MSEVRLNAYKIMWLFVFFDLPTNTKKERHNASAFRKRLMKDGFTMMQYSVYTRHCGSKESADVHTKRVNSMVPKKGQVSILRITDKQYGDIINFWGEATTPLPPKPSQLEFF
>NZ_CP047593.1|WP_160629865.1|3659390_3660314_-|type-II-CRISPR-associated-endonuclease-Cas1
MLKRTVCFESSAHLSFKNGQLVYTPKPEGEVRTVPVEDIGFVVLDNHSITLSLRLIEELTANNAAIVFCDKLHHPAAMSVPFDGNTTHAETLAAQLEMSEPLKKQLWKQTVEMKIKNQAAMLERTGSGGVEALRRYAASVKSGDADNREGAAARIYWQNLFGDNFRRERFGGAPNHLLNYVYAILRAAVARSLVGSGLYPAIGIHHHNKYNAYALADDVMEPYRPYADDIVYNIWKETEEPIEELTREHKQQLLKLLASDVHLTNTLRPLMVGLSTTTASLARCVGGTQKKVDYPVMKAVQNVGGAA
>NZ_CP047593.1|WP_160629866.1|3660316_3664747_-|hypothetical-protein
MSKRILGLDLGTNSIGWAVVDDFGNGLFELVKKGVHVFPEAVNDVAQGGARKSKAAGRREKRSARKINDRRRIRKINTLRVLVNYGMCPGITDVDLDVWQYGRKAEQQKRYKEYPKDKAFLDWQNTNDLSSKNKNKVMRNPYLFRFNAIEGKINWDNETERNNLGRAFYHLAQRRGFKSNSLDAGDDEYDVFHATLLSEFEREHDSSEEVSEIIEELAGDTKGKVSKLKNRLLRILRNTSDFSAAYSECIAVLEKPEFLGKVQKGIHELDQKIEKANARTIGEYFYQCYGDGTKIRGQYTDREKHYEAEFDEICRVQEIEGELKQKLYDAIFYQRPLRSQKGLVASCSLEYRLPAFRDGKPIYRVDETGKSVPITYSKKCAPLSHPIFEEFRMWSFINQIKFKSAGDAEMDFLSENQKKEIEHLFFRKSKPYFKFSEIAGVLFGKNATVARVRDEKDQPADFYVNYALDTSVSGCPVLSQFRKVFGADYQNRIVVTYKGKFNNVKGRKKTDSDILTEVWGVLFSREDPQERKRQLLKSWNFSEEVADAFSEIKLTRGYSSLSAGAMCKIVPLLKEGMIYSHAVLFANIPAVLRGSDVDANAVKNILSEKFCAYSAYRKQVVVANELISDFDSLEELKECFREVSDSHEKVALKFVAKFGAKEWSVFSDEEQALFSRKVAELIKTQWRVEADEGRWVKLMPLKSVLREILVGEFGVTNERASLLYHPSDVLKHNPYRKSETVRAGKLILESPIVSSIKNPVFMRTMHRLRAVVNALIHDETVFPETEIHIEMARELNTANMRAVIEADNKAREERRKKYAQIIKNLMKKEATDADLFKFKLWEELLPDDSEREWLKCNQEIEQKTLKYELWEDQKRKCPYTGQSIGLADFLGNNPRFEVEHILPRSRSYDNSEENLTLCCKKYNREIKKSRIPSECDNHEEILPRIEHWKERCVDLEREIKKTVSAARNADPERKAKIIQKRHRLKLERDHFAKKYERFTMKEVPNTFANRQLNDTRIITKYACFYLQTIFKNVMTVNGATVAELRKQWGLQLAEKKSREKHTHHCIDALVIACMTKYQYNQLAEFYTRKEDEKFARGRKATLVPQPWESFIPSVKQLEQEVLVSHFSSNNLLKQSGVLPSHIMKKVKAGATNNDLKKKQTARARLHKDTFYGRVLHEGEEISVVRVPLVSSNEALKGFKNLHDLKARVVDRGVAKRIGIVSRLLMKKYKLSFSEALKAKIYMKNSAIDLIIKDRVRKGWGLPEALNEPVFINGKMIMPIKRVRCRAATVKDPLAVKRQRDKSKKYDHPHKQYFYAENATVSAVGLYVGAGGVVHEGCEGLEAVKSKLVFPATKKDKKGRVYEFERALFVDQVVLFCKKSVNELAQLSLEELSIRLFKINDLSKNETRMVFRHHLVSGKKGDLELENKKHRGTKYPSEANFDSPNPLQRISYNNMNIAVEGVHFNLSVLGEIEFKGV
>NZ_CP047593.1|WP_160629867.1|3665057_3665936_+|hypothetical-protein
MNDRLYKGHFKGLDVAFSCALTTQTVNDIVIRHNCDPVAAHILGRALTGALLSAAILPEDNRLNVCWKYKGALKTIVTDAGADGTVRAFISPAQIGEIEDMTALYGDLGDLQTVVSLDGKILNSGTAPVSLQDAVKDLAYYHCISDQVETGMSAMIGFNADPENPVSICQGWMVQALPDCDLERFDRIRSRMEDPAFRDLLANVSVPEKAAAVLVADEPAFGGFYMEECSEPRFTCPCNKEKMGAVIRTLPIPERMEIVRKNEPLTVQCQFCNEQYVLSIKDCIAAWNEKLK
>NZ_CP047593.1|WP_160629868.1|3665938_3666745_-|sulfur-carrier-protein-ThiS-adenylyltransferase-ThiF
MPEIHVNETPFAVDQNTTLFRLRDAVKPDADILILNGAVASGDIPLSEGDCVSLIRRGEVPSEDELEALMAARHTPGVHQKVKTATVGIAGLGGLGSAIATALARVGIGKLIVADFDVVEPSNLNRQHYFVDQIGVPKTEATVSNLRKINPYVDVEAHCVKLMPETVFPLFGDVDVMIEAFDGAEQKAMLLQAFTAARPDVPFIGASGMAGYASGEMIGIKKLGPKLYIVGDLETGARPGCGLMAPRVGIAAHMQANLALRLIVDGIR
>NZ_CP047593.1|WP_160629869.1|3666749_3667253_-|hypothetical-protein
MKLFKLFLMPLAVVLFAGCSGYRVGSTLPEDVQTVSLHVVNNTDEPSIEVAVMRALRAEIQMDGRLQIRSENEADTVLTVTLNRFHLTPLAFDRRRGSLAREYRMVLSASSVLSRQADGEVIVESPELLGESEFDYSADLTSAKFAALPSAADDLARKAVSLITTAW
>NZ_CP047593.1|WP_160629870.1|3667464_3669042_+|hypothetical-protein
MKKVLIPTKLNPVAKELLEANGNYTVVQDDSAGLDVLAAQNPDTYALFVRSEKVTAEIIDALSSLKVVIRAGAGYNTIDIKHARSKGVDVMNTPGANANAVAEEVIALMLADARHIVPGDASTRAGKWEKKKFMGKEVTGKTIGIVGLGAIGRLVAKRLRGFDVTVLAFDPVLSEEAADRLNVKLVPLAELFEQSDYVSLHIPENEHTRGLINKDLFSVMKDGATLVNCARSGVINEDDLRAIKAEKGLRFLNDVYPKDAEGDKTVTDIADIMLPHLGASTAEANYNAARRSAEQLIDFDSKGVTSYIVNRDIPEGLDEAYADLAFTITKLTRAMIGEETKLNKIETSFYGELRKFGNWLSVPVVCALSEEFDRSMDEKAAISYLEEMGIDYATRETDEAKGYGSAITVDLMASVDGDNLRRISVRGTVAEGHLMISRIGHFDGLYFEPKGHLALFTYSDRPGVLSQIAGAMAEAGLNIDDVRNPHDKTGERSIAILKTNEPASAETMKQVAAKIDALSCCTVSF
>NZ_CP047593.1|WP_160629871.1|3669102_3671154_-|ATP-binding-cassette-domain-containing-protein
MLKLGDGLIFMGDILLNLFVRASSDVSKLWNRLRQGLLLFSKPWKLSGLMIDFIQVTKRFGTQEVLVDVSFRINAGEHVGIVGPNGAGKSTVFGLISGETSTDSGDVTLPKNVRLGHLHQQLHSYAQTDSLIDYATDSIPELKTIHAEIHELEHRLEKESGSGQMLERLGELQHEYEHLGGYAMRARAEAALSGLGFKEAEFNNPFQSFSGGWQMRAELVRTLIAQPDVLMLDEPSNYLDLPAVEWLQRFLRGFSGTMLLISHDRYLLESLTDRTLEIQGGSAVKYAGGYSYYVKEREQRHLQQAAEYRNYVEKKEQLESFINRFRAKSTKAAQVQSRVKMLEKMDAVRMPPKPPQAANLRIAPPPRCGAQIMQLENLGFSYDGERWIFRDVNLDIQNGQKIAIVGYNGMGKTTLLRVIAGTLQAGEGRLREGHKVVLGYQSQDFAETMPPDKTVLGVVRDAGNNVSERDVRGLLGSFGFSGDSVDKQVAVLSGGEKIRLAFARIFINPPNFLLLDEPTTHLDIQGREGLEKAIREYPGTVCLVSHDVSFVRGAADHIVEVRDGCVSSFPGGYDYYLEKTAGQETIEGRKTKVQSPDNVQPSAANPKAARAERAKMREAQKGLRRMEAEMETLQAAQQELHQQMASGNPELDYAVLNIQLSELTQKLTALEARWLEEADRLEG
>NZ_CP047593.1|WP_160629872.1|3671122_3672538_+|NAD-dependent-malic-enzyme
MKINPSPSFSIDLRVESSLSRQDLENIIATAEGVCVASQGIESPYGFTVNCRDSEHQQQIFQTLENTENTTVISADEITFRSHIGGKIETFNRLDLHAPGAMSIAYTPGVARVCSAIHEDVTRADALTIKKNMVAVVSDGTAVLGLGDIGPEAAMPVMEGKAMLFKGFGGVDAFPICLATKDPEEIIKTVKLLAPTFGGINLEDISAPRCFEIEERLKAELDIPVFHDDQHGTAVVSLAALFNALKITGKKMEELKVIVNGVGSAGVACSKIMLEAGVKNLIGFDRTGAIYKGRTEKMNFAKEWFAEHTNPEGFTGSLSEAMHGADLFLGVSAPGCITAEDVKNMAKDPIIFAMANPIPEIMPEEALPQARIMATGRSDYPNQINNVLCFPGIFKGALRCRAKSISEGMKVAAAHAIADLIPADKLCEEYIIPSVFDEGVADAVADAVEKVAREEGLARPRIDETALYKIK
>NZ_CP047593.1|WP_160629873.1|3672775_3674065_-|class-II-aldolase/adducin-family-protein
MKYEYLHPRDELAVTLERIYNYKMTTTSGGNLSIIDENGDIWITPARVDKGQLTPQDIVCVRKDGTIDGLHPPSSEFPFHKAVYEARPDIRSVVHAHPMSLVAFSCAHKVPETKAYPTAWNSNGVVGFAPYGVPGSEDLGAKIAEEFKKGYDSVILENHGVCCGGTSLQDAFQRFESLEVCAKAHIKAGVIGTPKELTEEQIQMQSKSYYKLEAFEYDTDMMCIKEKELRCELAKFVKRGYRQRLLSGTTGSFSARIDKDSFLITPYPLDRYTIEPEDLVMIRKNKKQIGKKPSRALHAHRAIYEANPEVNCIINASPVNALAFSICGEKIDTYTIPESYVFVGDVSLLPFEASFNDFDTLTKTLTLKTPAAVLSNNGVMVVGKDPLSAFDKLEVLECSAEAIIDSQPIGGHVSMSQEIIDELCEAFNL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047593_1	1.18\|2316634\|33\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316634-2316666	33	MH617132	Microviridae sp. isolate ctcg164, complete genome	1330-1362	2	0.939
NZ_CP047593_1	1.27\|2317223\|33\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2317223-2317255	33	MH617132	Microviridae sp. isolate ctcg164, complete genome	1330-1362	2	0.939
NZ_CP047593_1	1.18\|2316634\|33\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316634-2316666	33	MH616893	Microviridae sp. isolate cthd071, complete genome	1342-1374	3	0.909
NZ_CP047593_1	1.18\|2316634\|33\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316634-2316666	33	MH616878	Microviridae sp. isolate ctia061, complete genome	1372-1404	3	0.909
NZ_CP047593_1	1.27\|2317223\|33\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2317223-2317255	33	MH616893	Microviridae sp. isolate cthd071, complete genome	1342-1374	3	0.909
NZ_CP047593_1	1.27\|2317223\|33\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2317223-2317255	33	MH616878	Microviridae sp. isolate ctia061, complete genome	1372-1404	3	0.909
NZ_CP047593_1	1.18\|2316634\|33\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316634-2316666	33	MK249210	Blackfly microvirus SF02 isolate 160, complete genome	1360-1392	4	0.879
NZ_CP047593_1	1.18\|2316634\|33\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316634-2316666	33	MK249134	Blackfly microvirus SF02 isolate 018, complete genome	1360-1392	4	0.879
NZ_CP047593_1	1.27\|2317223\|33\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2317223-2317255	33	MK249210	Blackfly microvirus SF02 isolate 160, complete genome	1360-1392	4	0.879
NZ_CP047593_1	1.27\|2317223\|33\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2317223-2317255	33	MK249134	Blackfly microvirus SF02 isolate 018, complete genome	1360-1392	4	0.879
NZ_CP047593_1	1.6\|2315847\|32\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2315847-2315878	32	NZ_CP023526	Cedecea neteri strain FDAARGOS_392 plasmid unnamed, complete sequence	174842-174873	5	0.844
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	MK105819	Synechococcus phage S-H1, complete genome	29093-29126	6	0.824
NZ_CP047593_2	2.4\|3657883\|31\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3657883-3657913	31	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	182672-182702	6	0.806
NZ_CP047593_2	2.8\|3658148\|30\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3658148-3658177	30	NZ_CP020907	Rhizobium etli strain NXC12 plasmid pRetNXC12a, complete sequence	101390-101419	6	0.8
NZ_CP047593_2	2.8\|3658148\|30\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3658148-3658177	30	NC_021906	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1a, complete sequence	100300-100329	6	0.8
NZ_CP047593_2	2.10\|3658280\|30\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3658280-3658309	30	NC_022995	Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence	300011-300040	6	0.8
NZ_CP047593_2	2.15\|3658610\|30\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3658610-3658639	30	MN018232	Synechococcus phage S-B43, complete genome	51098-51127	6	0.8
NZ_CP047593_2	2.15\|3658610\|30\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3658610-3658639	30	MH920638	Synechoccus phage S-B05, partial genome	28634-28663	6	0.8
NZ_CP047593_2	2.15\|3658610\|30\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3658610-3658639	30	MK799832	Synechococcus phage S-B05, complete genome	28634-28663	6	0.8
NZ_CP047593_1	1.2\|2315585\|33\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2315585-2315617	33	NZ_CP014309	Burkholderia sp. PAMC 26561 plasmid unnamed2, complete sequence	285048-285080	7	0.788
NZ_CP047593_1	1.2\|2315585\|33\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2315585-2315617	33	NZ_CP014308	Burkholderia sp. PAMC 26561 plasmid unnamed1, complete sequence	550044-550076	7	0.788
NZ_CP047593_2	2.5\|3657950\|30\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3657950-3657979	30	NC_012529	Deinococcus deserti VCD115 plasmid 2, complete sequence	86694-86723	7	0.767
NZ_CP047593_1	1.6\|2315847\|32\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2315847-2315878	32	MK801723	Gordonia phage Coeur, complete genome	15273-15304	8	0.75
NZ_CP047593_1	1.11\|2316174\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316174-2316207	34	NZ_CP039644	Azospirillum sp. TSA2s plasmid p2, complete sequence	61081-61114	8	0.765
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	NZ_CP015006	Aminobacter aminovorans strain KCTC 2477 plasmid pAA01, complete sequence	499288-499321	8	0.765
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	NC_019848	Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence	36055-36088	8	0.765
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	763710-763743	8	0.765
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	NZ_CP021827	Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence	221682-221715	8	0.765
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	NZ_CP021830	Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence	1120291-1120324	8	0.765
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	NZ_CP021794	Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence	661392-661425	8	0.765
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	1316403-1316436	8	0.765
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	NC_017324	Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence	281301-281334	8	0.765
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	NZ_CP021821	Sinorhizobium meliloti strain M162 plasmid accessoryA, complete sequence	109276-109309	8	0.765
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	NZ_CP021813	Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence	450184-450217	8	0.765
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	NZ_CP021805	Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence	325375-325408	8	0.765
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	1314740-1314773	8	0.765
NZ_CP047593_2	2.5\|3657950\|30\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3657950-3657979	30	NZ_KX912255	Enterobacter cloacae strain H140960786 plasmid pJF-786, complete sequence	17401-17430	8	0.733
NZ_CP047593_2	2.5\|3657950\|30\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3657950-3657979	30	NZ_CP029389	Acinetobacter defluvii strain WCHA30 plasmid p1_010030, complete sequence	11682-11711	8	0.733
NZ_CP047593_2	2.10\|3658280\|30\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3658280-3658309	30	MN692987	Marine virus AFVG_117M51, complete genome	37915-37944	8	0.733
NZ_CP047593_2	2.11\|3658346\|30\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3658346-3658375	30	NZ_KP342511	Enterococcus faecium isolate N12-493 plasmid pEfm12493, complete sequence	131476-131505	8	0.733
NZ_CP047593_2	2.11\|3658346\|30\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3658346-3658375	30	NZ_CP053338	Lactobacillus paraplantarum strain CK401 plasmid pCK401A, complete sequence	1656-1685	8	0.733
NZ_CP047593_2	2.11\|3658346\|30\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3658346-3658375	30	JX094500	Cronobacter phage CR5, complete genome	216527-216556	8	0.733
NZ_CP047593_2	2.16\|3658676\|30\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3658676-3658705	30	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1447977-1448006	8	0.733
NZ_CP047593_2	2.16\|3658676\|30\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3658676-3658705	30	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	725714-725743	8	0.733
NZ_CP047593_2	2.17\|3658742\|30\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3658742-3658771	30	NZ_CP032530	Bacillus megaterium NCT-2 plasmid pNCT2_2, complete sequence	261-290	8	0.733
NZ_CP047593_2	2.17\|3658742\|30\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3658742-3658771	30	CP041517	Bacillus aryabhattai strain KNU10 plasmid unnamed1, complete sequence	31281-31310	8	0.733
NZ_CP047593_1	1.9\|2316042\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316042-2316075	34	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	143121-143154	9	0.735
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	856587-856620	9	0.735
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	103253-103286	9	0.735
NZ_CP047593_2	2.4\|3657883\|31\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3657883-3657913	31	NZ_CP019604	Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence	1412-1442	9	0.71
NZ_CP047593_2	2.8\|3658148\|30\|NZ_CP047593\|CRISPRCasFinder,CRT,PILER-CR	3658148-3658177	30	NZ_AP018173	Calothrix sp. NIES-2098 plasmid plasmid1 DNA, complete genome	17619-17648	9	0.7
NZ_CP047593_1	1.3\|2315650\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2315650-2315683	34	NC_021347	Rhodococcus phage E3, complete genome	29590-29623	10	0.706
NZ_CP047593_1	1.9\|2316042\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316042-2316075	34	NZ_CP050098	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence	878380-878413	10	0.706
NZ_CP047593_1	1.9\|2316042\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316042-2316075	34	NZ_CP053440	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence	948955-948988	10	0.706
NZ_CP047593_1	1.9\|2316042\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316042-2316075	34	NC_012848	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence	580060-580093	10	0.706
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	320039-320072	10	0.706
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	NZ_CP049914	Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence	269087-269120	10	0.706
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	112357-112390	10	0.706
NZ_CP047593_1	1.19\|2316699\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316699-2316732	34	KY971611	Pseudomonas phage PspYZU08, complete genome	4753-4786	10	0.706
NZ_CP047593_1	1.23\|2316960\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316960-2316993	34	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	632156-632189	10	0.706
NZ_CP047593_1	1.23\|2316960\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316960-2316993	34	NZ_CP016617	Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence	1218736-1218769	10	0.706
NZ_CP047593_1	1.6\|2315847\|32\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2315847-2315878	32	NZ_CP023152	Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence	78364-78395	11	0.656
NZ_CP047593_1	1.6\|2315847\|32\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2315847-2315878	32	NZ_AP012556	Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence	61722-61753	11	0.656
NZ_CP047593_1	1.15\|2316436\|34\|NZ_CP047593\|PILER-CR,CRISPRCasFinder,CRT	2316436-2316469	34	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	305382-305415	11	0.676

1. spacer 1.18|2316634|33|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to MH617132 (Microviridae sp. isolate ctcg164, complete genome) position: , mismatch: 2, identity: 0.939

ggctatcaagagcgttgggccgagtaccgttat	CRISPR spacer
ggctatcaggagcgttgggctgagtaccgttat	Protospacer
********.***********.************

2. spacer 1.27|2317223|33|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to MH617132 (Microviridae sp. isolate ctcg164, complete genome) position: , mismatch: 2, identity: 0.939

ggctatcaagagcgttgggccgagtaccgttat	CRISPR spacer
ggctatcaggagcgttgggctgagtaccgttat	Protospacer
********.***********.************

3. spacer 1.18|2316634|33|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to MH616893 (Microviridae sp. isolate cthd071, complete genome) position: , mismatch: 3, identity: 0.909

ggctatcaagagcgttgggccgagtaccgttat	CRISPR spacer
ggctatcaagagcgctgggccgagtaccgctac	Protospacer
**************.**************.**.

4. spacer 1.18|2316634|33|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to MH616878 (Microviridae sp. isolate ctia061, complete genome) position: , mismatch: 3, identity: 0.909

ggctatcaagagcgttgggccgagtaccgttat	CRISPR spacer
ggctatcaggagcgttgggccgagtatcgttac	Protospacer
********.*****************.*****.

5. spacer 1.27|2317223|33|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to MH616893 (Microviridae sp. isolate cthd071, complete genome) position: , mismatch: 3, identity: 0.909

ggctatcaagagcgttgggccgagtaccgttat	CRISPR spacer
ggctatcaagagcgctgggccgagtaccgctac	Protospacer
**************.**************.**.

6. spacer 1.27|2317223|33|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to MH616878 (Microviridae sp. isolate ctia061, complete genome) position: , mismatch: 3, identity: 0.909

ggctatcaagagcgttgggccgagtaccgttat	CRISPR spacer
ggctatcaggagcgttgggccgagtatcgttac	Protospacer
********.*****************.*****.

7. spacer 1.18|2316634|33|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to MK249210 (Blackfly microvirus SF02 isolate 160, complete genome) position: , mismatch: 4, identity: 0.879

ggctatcaagagcgttgggccgagtaccgttat	CRISPR spacer
ggctaccaagagcggtgggccgagtaccggcat	Protospacer
*****.******** ************** .**

8. spacer 1.18|2316634|33|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to MK249134 (Blackfly microvirus SF02 isolate 018, complete genome) position: , mismatch: 4, identity: 0.879

ggctatcaagagcgttgggccgagtaccgttat	CRISPR spacer
ggctaccaagagcggtgggccgagtaccggcat	Protospacer
*****.******** ************** .**

9. spacer 1.27|2317223|33|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to MK249210 (Blackfly microvirus SF02 isolate 160, complete genome) position: , mismatch: 4, identity: 0.879

ggctatcaagagcgttgggccgagtaccgttat	CRISPR spacer
ggctaccaagagcggtgggccgagtaccggcat	Protospacer
*****.******** ************** .**

10. spacer 1.27|2317223|33|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to MK249134 (Blackfly microvirus SF02 isolate 018, complete genome) position: , mismatch: 4, identity: 0.879

ggctatcaagagcgttgggccgagtaccgttat	CRISPR spacer
ggctaccaagagcggtgggccgagtaccggcat	Protospacer
*****.******** ************** .**

11. spacer 1.6|2315847|32|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023526 (Cedecea neteri strain FDAARGOS_392 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

attgataacccggttctcaccaccggcagaaa	CRISPR spacer
attgataacccggttctgaccaacggcgcaac	Protospacer
***************** **** ****. **

12. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to MK105819 (Synechococcus phage S-H1, complete genome) position: , mismatch: 6, identity: 0.824

gtgtgcagc-gtcagcaggttgccgctgccgtcat	CRISPR spacer
-cgagcaacagtcagcaggttgttgctgccgtcat	Protospacer
 .* ***.* ************..***********

13. spacer 2.4|3657883|31|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 6, identity: 0.806

gacgagcagctttccgcgctgaagtctcagg	CRISPR spacer
gacgagcagcttgccgcgctgaagccaaggt	Protospacer
************ ***********.*  .*

14. spacer 2.8|3658148|30|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020907 (Rhizobium etli strain NXC12 plasmid pRetNXC12a, complete sequence) position: , mismatch: 6, identity: 0.8

tctgttcaggctctttatcagcgagttcgc	CRISPR spacer
gctgatcaggcgctttatcagcgaggacac	Protospacer
 *** ****** *************  *.*

15. spacer 2.8|3658148|30|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to NC_021906 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1a, complete sequence) position: , mismatch: 6, identity: 0.8

tctgttcaggctctttatcagcgagttcgc	CRISPR spacer
gctgatcaggcgctttatcagcgaggacac	Protospacer
 *** ****** *************  *.*

16. spacer 2.10|3658280|30|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to NC_022995 (Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence) position: , mismatch: 6, identity: 0.8

taatggttactctaacgtctggaccgttgc	CRISPR spacer
taatggttacccgaacgtctggattatcgc	Protospacer
**********.* **********...*.**

17. spacer 2.15|3658610|30|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to MN018232 (Synechococcus phage S-B43, complete genome) position: , mismatch: 6, identity: 0.8

cctttaccggtactccgttcatatgcctca	CRISPR spacer
agtttacctgtacttcgttcatatgctaca	Protospacer
  ****** *****.***********. **

18. spacer 2.15|3658610|30|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to MH920638 (Synechoccus phage S-B05, partial genome) position: , mismatch: 6, identity: 0.8

cctttaccggtactccgttcatatgcctca	CRISPR spacer
agtttacctgtacttcgttcatatgctaca	Protospacer
  ****** *****.***********. **

19. spacer 2.15|3658610|30|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to MK799832 (Synechococcus phage S-B05, complete genome) position: , mismatch: 6, identity: 0.8

cctttaccggtactccgttcatatgcctca	CRISPR spacer
agtttacctgtacttcgttcatatgctaca	Protospacer
  ****** *****.***********. **

20. spacer 1.2|2315585|33|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014309 (Burkholderia sp. PAMC 26561 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

agaatagcagaaccggcaaccgcctcctgtctc----	CRISPR spacer
agaattgcagagccggcaaccgcc----gtatcgatg	Protospacer
***** *****.************    ** **

21. spacer 1.2|2315585|33|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014308 (Burkholderia sp. PAMC 26561 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

agaatagcagaaccggcaaccgcctcctgtctc----	CRISPR spacer
agaattgcagagccggcaaccgcc----gtatcgatg	Protospacer
***** *****.************    ** **

22. spacer 2.5|3657950|30|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to NC_012529 (Deinococcus deserti VCD115 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.767

ttgcccatgcgctgattaaatccaccaccg	CRISPR spacer
ctccccatgcgctgattgaatccactcagg	Protospacer
.* **************.*******.   *

23. spacer 1.6|2315847|32|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to MK801723 (Gordonia phage Coeur, complete genome) position: , mismatch: 8, identity: 0.75

attgataacccggttctcaccaccggcagaaa	CRISPR spacer
acccaccacccgactctcaccaccggcagata	Protospacer
*.. *. *****..**************** *

24. spacer 1.11|2316174|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039644 (Azospirillum sp. TSA2s plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.765

ccgtcagtttgttggcagtttccggaagcgcctc	CRISPR spacer
ccgtcagttttttgccagtttccgccatccgcac	Protospacer
********** *** *********  * *  * *

25. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015006 (Aminobacter aminovorans strain KCTC 2477 plasmid pAA01, complete sequence) position: , mismatch: 8, identity: 0.765

gtgtgcagcgtcagcaggttgccgctgccgtcat	CRISPR spacer
acgcccgccgtcagcaggttgccgctgccgccaa	Protospacer
..*. *. **********************.**

26. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NC_019848 (Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence) position: , mismatch: 8, identity: 0.765

gtgtgcagcgtcagcaggttgccgctgccgtcat	CRISPR spacer
atgtcggggatcagcagcgtgccgctgccgtcat	Protospacer
.***  .* .*******  ***************

27. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.765

gtgtgcagcgtcagcaggttgccgctgccgtcat	CRISPR spacer
atgtcggggatcagcagcgtgccgctgccgtcat	Protospacer
.***  .* .*******  ***************

28. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021827 (Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.765

gtgtgcagcgtcagcaggttgccgctgccgtcat	CRISPR spacer
atgtcggggatcagcagcgtgccgctgccgtcat	Protospacer
.***  .* .*******  ***************

29. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021830 (Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.765

gtgtgcagcgtcagcaggttgccgctgccgtcat	CRISPR spacer
atgtcggggatcagcagcgtgccgctgccgtcat	Protospacer
.***  .* .*******  ***************

30. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.765

gtgtgcagcgtcagcaggttgccgctgccgtcat	CRISPR spacer
atgtcggggatcagcagcgtgccgctgccgtcat	Protospacer
.***  .* .*******  ***************

31. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.765

gtgtgcagcgtcagcaggttgccgctgccgtcat	CRISPR spacer
atgtcggggatcagcagcgtgccgctgccgtcat	Protospacer
.***  .* .*******  ***************

32. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 8, identity: 0.765

gtgtgcagcgtcagcaggttgccgctgccgtcat	CRISPR spacer
atgtcggggatcagcagcgtgccgctgccgtcat	Protospacer
.***  .* .*******  ***************

33. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021821 (Sinorhizobium meliloti strain M162 plasmid accessoryA, complete sequence) position: , mismatch: 8, identity: 0.765

gtgtgcagcgtcagcaggttgccgctgccgtcat	CRISPR spacer
atgtcggggatcagcagcgtgccgctgccgtcat	Protospacer
.***  .* .*******  ***************

34. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.765

gtgtgcagcgtcagcaggttgccgctgccgtcat	CRISPR spacer
atgtcggggatcagcagcgtgccgctgccgtcat	Protospacer
.***  .* .*******  ***************

35. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021805 (Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.765

gtgtgcagcgtcagcaggttgccgctgccgtcat	CRISPR spacer
atgtcggggatcagcagcgtgccgctgccgtcat	Protospacer
.***  .* .*******  ***************

36. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.765

gtgtgcagcgtcagcaggttgccgctgccgtcat	CRISPR spacer
atgtcggggatcagcagcgtgccgctgccgtcat	Protospacer
.***  .* .*******  ***************

37. spacer 2.5|3657950|30|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX912255 (Enterobacter cloacae strain H140960786 plasmid pJF-786, complete sequence) position: , mismatch: 8, identity: 0.733

ttgcccatgcgctgattaaatccaccaccg	CRISPR spacer
ttgcccaggcgctgtttaaatcctggtttg	Protospacer
******* ****** ********    ..*

38. spacer 2.5|3657950|30|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029389 (Acinetobacter defluvii strain WCHA30 plasmid p1_010030, complete sequence) position: , mismatch: 8, identity: 0.733

ttgcccatgcgctgattaaatccaccaccg	CRISPR spacer
ctgtccatgcgctgatttaatccaatgcat	Protospacer
.**.************* ****** ..*

39. spacer 2.10|3658280|30|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to MN692987 (Marine virus AFVG_117M51, complete genome) position: , mismatch: 8, identity: 0.733

taatggttactctaacgtctggaccgttgc	CRISPR spacer
tggtggttactctaacgtcttgaacgcaat	Protospacer
*..***************** ** **. ..

40. spacer 2.11|3658346|30|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP342511 (Enterococcus faecium isolate N12-493 plasmid pEfm12493, complete sequence) position: , mismatch: 8, identity: 0.733

ccggaaattgttctttttggtgttgggaat	CRISPR spacer
tgttaaattgttatttttggtgttgtctat	Protospacer
.   ******** ************   **

41. spacer 2.11|3658346|30|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053338 (Lactobacillus paraplantarum strain CK401 plasmid pCK401A, complete sequence) position: , mismatch: 8, identity: 0.733

ccggaaattgttctttttggtgttgggaat	CRISPR spacer
ttggaaattgttctttgtggtggtgtgcgc	Protospacer
..************** ***** ** * ..

42. spacer 2.11|3658346|30|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to JX094500 (Cronobacter phage CR5, complete genome) position: , mismatch: 8, identity: 0.733

ccggaaattgttctttttggtgttgggaat	CRISPR spacer
aaagtgtttgttctttgtggtgttgtgaat	Protospacer
  .* . ********* ******** ****

43. spacer 2.16|3658676|30|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 8, identity: 0.733

cggccggtgaactggtgattgaacagtcct	CRISPR spacer
acgccggtgaactggtgctcgaacacggca	Protospacer
  *************** *.*****   *

44. spacer 2.16|3658676|30|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 8, identity: 0.733

cggccggtgaactggtgattgaacagtcct	CRISPR spacer
acgccggtgaactggtgctcgaacacggca	Protospacer
  *************** *.*****   *

45. spacer 2.17|3658742|30|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032530 (Bacillus megaterium NCT-2 plasmid pNCT2_2, complete sequence) position: , mismatch: 8, identity: 0.733

gtcaaccggcagctcatgccagtggatatt	CRISPR spacer
ggaaaccggcagctcctgcgagtggaggaa	Protospacer
*  ************ *** ****** .

46. spacer 2.17|3658742|30|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to CP041517 (Bacillus aryabhattai strain KNU10 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gtcaaccggcagctcatgccagtggatatt	CRISPR spacer
ggaaaccggcagctcctgcgagtggaggaa	Protospacer
*  ************ *** ****** .

47. spacer 1.9|2316042|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 9, identity: 0.735

tgctgaatccgatgctcgagaagcacttgctcag	CRISPR spacer
cgctgaagccgatgctcgcgaagcaatggagcgt	Protospacer
.****** ********** ****** * *  *.

48. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

gtgtg-cagcgtcagcaggttgccgctgccgtcat	CRISPR spacer
-cgcgccagcatcagcaggttgccgccgcccaccg	Protospacer
 .*.* ****.***************.***  *

49. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 9, identity: 0.735

gtgtgcagcgtcagcaggttgccgctgccgtcat	CRISPR spacer
tcgggcagcgacagcaggttgccggtgcggatgt	Protospacer
 .* ****** ************* *** * ..*

50. spacer 2.4|3657883|31|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019604 (Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence) position: , mismatch: 9, identity: 0.71

gacgagcagctttccgcgctgaagtctcagg	CRISPR spacer
aacgcgcagctttccgcgctgtagctggcga	Protospacer
.*** **************** **..   *.

51. spacer 2.8|3658148|30|NZ_CP047593|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018173 (Calothrix sp. NIES-2098 plasmid plasmid1 DNA, complete genome) position: , mismatch: 9, identity: 0.7

tctgttcaggctctttatcagcgagttcgc	CRISPR spacer
atcgctcaggctcttaatcagcgagtagtg	Protospacer
 ..*.********** **********

52. spacer 1.3|2315650|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NC_021347 (Rhodococcus phage E3, complete genome) position: , mismatch: 10, identity: 0.706

acctccaccagctgatgctgctcgccgtcaaata	CRISPR spacer
cgggccaccagcggacgctgctcgccgtcgacgg	Protospacer
    ******** **.*************.*  .

53. spacer 1.9|2316042|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 10, identity: 0.706

tgctgaatccgatgctcgagaagcacttgctcag	CRISPR spacer
cgctgaagccgatgctcgcgaagcaatggagtgt	Protospacer
.****** ********** ****** * *  ..

54. spacer 1.9|2316042|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 10, identity: 0.706

tgctgaatccgatgctcgagaagcacttgctcag	CRISPR spacer
cgctgaagccgatgctcgcgaagcaatggagtgt	Protospacer
.****** ********** ****** * *  ..

55. spacer 1.9|2316042|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 10, identity: 0.706

tgctgaatccgatgctcgagaagcacttgctcag	CRISPR spacer
cgctgaagccgatgctcgcgaagcaatggagtgt	Protospacer
.****** ********** ****** * *  ..

56. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 10, identity: 0.706

gtgtgcagcgtcagcaggttgccgctgccgtcat	CRISPR spacer
agccggatcgtcagcgtgttgccgctgccgtcga	Protospacer
.  .* * *******. ***************.

57. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049914 (Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

gtgtgcagcgtcagcaggttgccgctgccgtcat	CRISPR spacer
acaatcaagatcagcaggttgccgcttacgtcat	Protospacer
...  **. .****************  ******

58. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

gtgtgcagcgtcagcaggttgccgctgccgtcat	CRISPR spacer
acttccagcggcagcaggtggccgctgccctgga	Protospacer
.. * ***** ******** ********* * .

59. spacer 1.19|2316699|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to KY971611 (Pseudomonas phage PspYZU08, complete genome) position: , mismatch: 10, identity: 0.706

aagtcagtcaacaagcaagccttagcggacctta	CRISPR spacer
tgggcagtcaacaagcaggtcttagcggtagcca	Protospacer
 .* *************.*.********   ..*

60. spacer 1.23|2316960|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 10, identity: 0.706

tggtcgatcttgcggccggcagtgtcgttatcgc	CRISPR spacer
aagtcgatcttgccgacggcagtgtcgaaggtgg	Protospacer
 .*********** * ***********  . .*

61. spacer 1.23|2316960|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016617 (Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

tggtcgatcttgcggccggcagtgtcgttatcgc	CRISPR spacer
aagcgctccttgcggcctgcagtctcgttatccc	Protospacer
 .*.   .********* ***** ******** *

62. spacer 1.6|2315847|32|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023152 (Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence) position: , mismatch: 11, identity: 0.656

attgataacccggttctcaccaccggcagaaa	CRISPR spacer
gttgattacccgtttctcaccacccctccgct	Protospacer
.***** ***** ***********  .  .

63. spacer 1.6|2315847|32|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 11, identity: 0.656

attgataacccggttctcaccaccggcagaaa	CRISPR spacer
gttgattacccgtttctcaccacccctccgct	Protospacer
.***** ***** ***********  .  .

64. spacer 1.15|2316436|34|NZ_CP047593|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 11, identity: 0.676

gtgtgcagcgtcagcaggttgccgctgccgtcat	CRISPR spacer
accgacagagccagcaggttgccgctgccggacg	Protospacer
..  .*** *.*******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

959068 : 1037513

Bacillus_virus(14.29%)

tRNA,holin,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160627224.1\|959068_960379_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_160627226.1\|960778_961255_+	hypothetical protein	NA	NA	NA	NA
WP_160627228.1\|961680_962643_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_160627230.1\|962815_963466_-	hypothetical protein	NA	NA	NA	NA
WP_160627232.1\|963560_964430_-	glycine/betaine ABC transporter	NA	NA	NA	NA
WP_160627234.1\|964468_965299_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_160627237.1\|965295_966549_-\|holin	betaine/proline/choline family ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.6e-29	36.9
WP_160627239.1\|966569_967748_-	hypothetical protein	NA	NA	NA	NA
WP_160627241.1\|967920_969852_-\|tRNA	methionine--tRNA ligase	A0A1V0SEZ7	Hokovirus	1.9e-90	32.4
WP_160630049.1\|969971_971435_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_160627243.1\|971459_971756_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_160627245.1\|972015_972273_+	hypothetical protein	NA	NA	NA	NA
WP_160627247.1\|972315_972969_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_160630050.1\|972996_973233_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_160627249.1\|973229_976385_-	hypothetical protein	NA	NA	NA	NA
WP_160627251.1\|976537_977980_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_160627253.1\|977976_979062_-	hypothetical protein	NA	NA	NA	NA
WP_160627255.1\|979063_980221_-	hypothetical protein	NA	NA	NA	NA
WP_160627257.1\|980318_982715_-	hypothetical protein	NA	NA	NA	NA
WP_160627259.1\|982873_983752_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_160627261.1\|984197_984545_-	hypothetical protein	NA	NA	NA	NA
WP_160627263.1\|984788_985924_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_160627265.1\|986745_988173_-	sulfatase-like hydrolase/transferase	A0A2K9L1A5	Tupanvirus	8.5e-11	23.4
WP_160627267.1\|988169_990779_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_160627269.1\|990775_992857_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_160627271.1\|992858_994256_-	MFS transporter	NA	NA	NA	NA
WP_160627272.1\|994624_995794_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_160627274.1\|995911_996910_-	hypothetical protein	NA	NA	NA	NA
WP_160627276.1\|997004_997454_-	hypothetical protein	NA	NA	NA	NA
WP_160627277.1\|997453_999103_-	hypothetical protein	A0A0E3F215	Synechococcus_phage	1.6e-05	35.7
WP_160627279.1\|999172_999475_-	hypothetical protein	NA	NA	NA	NA
WP_160627281.1\|999601_1000156_-	hypothetical protein	NA	NA	NA	NA
WP_160627283.1\|1000155_1002138_-	hypothetical protein	A0A127KMK7	Cyanophage	1.4e-06	40.0
WP_160627285.1\|1002152_1003532_-	MFS transporter	NA	NA	NA	NA
WP_160627287.1\|1003571_1004876_-	hypothetical protein	NA	NA	NA	NA
WP_160627289.1\|1004972_1007831_-	hypothetical protein	NA	NA	NA	NA
WP_160627291.1\|1007855_1010099_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_160627293.1\|1010204_1012136_-	hypothetical protein	NA	NA	NA	NA
WP_160627295.1\|1012239_1013652_-	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	1.6e-22	26.1
WP_160627298.1\|1013661_1015611_-	hypothetical protein	NA	NA	NA	NA
WP_160627300.1\|1015845_1017504_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_160627303.1\|1017500_1018973_-	hypothetical protein	NA	NA	NA	NA
WP_160627305.1\|1018973_1019816_-	hypothetical protein	NA	NA	NA	NA
WP_160627307.1\|1019812_1021126_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_160627309.1\|1021185_1023471_-	hypothetical protein	NA	NA	NA	NA
WP_160627311.1\|1023484_1025032_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_160627313.1\|1025073_1026717_-	sulfatase-like hydrolase/transferase	A0A1V0SA98	Catovirus	1.2e-08	25.4
WP_160627315.1\|1026768_1028487_-	hypothetical protein	NA	NA	NA	NA
WP_160627317.1\|1028698_1029757_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_160627319.1\|1029779_1031264_-	MFS transporter	NA	NA	NA	NA
WP_160627321.1\|1031287_1033522_-	family 78 glycoside hydrolase catalytic domain	NA	NA	NA	NA
WP_160627322.1\|1033833_1035099_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_160627323.1\|1035232_1035778_+\|transposase	transposase	NA	NA	NA	NA
WP_160627325.1\|1035799_1036261_-	hypothetical protein	NA	NA	NA	NA
WP_160627327.1\|1036457_1037513_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1042202 : 1082267

Paenibacillus_phage(25.0%)

transposase,integrase

attL 1055667:1055681|attR 1082880:1082894

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160627337.1\|1042202_1043222_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_160627339.1\|1043583_1043781_+	hypothetical protein	NA	NA	NA	NA
WP_160627341.1\|1044006_1044336_-	hypothetical protein	NA	NA	NA	NA
WP_160627263.1\|1044455_1045590_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_160627343.1\|1045724_1046465_-	TIR domain-containing protein	NA	NA	NA	NA
WP_160627345.1\|1047050_1048154_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_160625940.1\|1048294_1049512_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.0e-57	36.5
WP_160627347.1\|1049759_1050959_+	hypothetical protein	NA	NA	NA	NA
WP_160627328.1\|1051065_1051437_-	hypothetical protein	NA	NA	NA	NA
WP_160627327.1\|1051536_1052592_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_160625940.1\|1052901_1054119_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.0e-57	36.5
WP_160627349.1\|1054383_1054875_-	DUF3859 domain-containing protein	NA	NA	NA	NA
WP_160627351.1\|1054943_1055633_-	hypothetical protein	NA	NA	NA	NA
1055667:1055681	attL	NA	NA	NA	NA
WP_160627353.1\|1055716_1056073_-	DUF2513 domain-containing protein	Q3HQY9	Burkholderia_phage	8.0e-19	44.1
WP_160627071.1\|1056140_1056536_-	hypothetical protein	NA	NA	NA	NA
WP_160627355.1\|1056609_1056951_-	hypothetical protein	NA	NA	NA	NA
WP_160627357.1\|1057029_1057374_-	hypothetical protein	NA	NA	NA	NA
WP_160627359.1\|1057981_1058341_-	hypothetical protein	NA	NA	NA	NA
WP_160627361.1\|1058406_1059267_-	hypothetical protein	NA	NA	NA	NA
WP_160627363.1\|1059778_1060747_+\|integrase	integron integrase	H7BUX8	unidentified_phage	1.2e-05	24.6
WP_160630051.1\|1060770_1060905_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_160627366.1\|1060901_1061051_+	hypothetical protein	NA	NA	NA	NA
WP_160627368.1\|1061029_1065640_-	hypothetical protein	A6M964	Geobacillus_virus	1.6e-05	31.2
WP_160627370.1\|1065453_1066887_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_160627372.1\|1066974_1067937_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_160627373.1\|1068031_1070317_-	family 78 glycoside hydrolase catalytic domain	NA	NA	NA	NA
WP_160627375.1\|1070306_1073135_-	beta-phosphoglucomutase	NA	NA	NA	NA
WP_160627377.1\|1073593_1073785_-	SlyX protein	NA	NA	NA	NA
WP_160627379.1\|1073793_1075428_-	hypothetical protein	NA	NA	NA	NA
WP_160627381.1\|1075566_1076169_+	XTP/dITP diphosphatase	C4N218	Cassava_brown_streak_virus	4.1e-15	32.6
WP_160630052.1\|1076300_1076588_+	DUF1540 domain-containing protein	NA	NA	NA	NA
WP_160627383.1\|1076693_1079228_+	ATP-dependent helicase HrpB	A0A2K9L0J3	Tupanvirus	9.4e-45	30.7
WP_160627385.1\|1079438_1080899_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_160627387.1\|1081046_1082267_+\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	2.0e-109	50.5
1082880:1082894	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2588263 : 2653483

uncultured_Mediterranean_phage(18.18%)

tRNA,transposase,protease,integrase

attL 2606020:2606039|attR 2645328:2645347

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160629057.1\|2588263_2589616_-\|integrase	tyrosine-type recombinase/integrase	S5MDN5	Escherichia_phage	1.7e-05	26.9
WP_160629058.1\|2589899_2590634_-	TlyA family rRNA (cytidine-2'-O)-methyltransferase	NA	NA	NA	NA
WP_160629059.1\|2590745_2592923_+	hypothetical protein	NA	NA	NA	NA
WP_160629060.1\|2592938_2594003_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_160629061.1\|2594077_2594305_+	50S ribosomal protein L28	NA	NA	NA	NA
WP_160629062.1\|2594606_2594912_-	30S ribosomal protein S14	NA	NA	NA	NA
WP_160629063.1\|2595068_2596907_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	2.4e-114	40.3
WP_160630099.1\|2597029_2598310_+	citrate synthase	NA	NA	NA	NA
WP_160629064.1\|2598804_2598981_+	hypothetical protein	NA	NA	NA	NA
WP_160629065.1\|2598977_2600012_+	UDP-N-acetylglucosamine pyrophosphorylase	NA	NA	NA	NA
WP_160629066.1\|2600025_2601390_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_160629067.1\|2601386_2602487_-	[FeFe] hydrogenase H-cluster radical SAM maturase HydE	NA	NA	NA	NA
WP_160629068.1\|2602565_2603969_-	[FeFe] hydrogenase H-cluster radical SAM maturase HydG	NA	NA	NA	NA
WP_160629069.1\|2603965_2605174_-	[FeFe] hydrogenase H-cluster maturation GTPase HydF	NA	NA	NA	NA
WP_160629070.1\|2605170_2606499_-	aspartate ammonia-lyase	NA	NA	NA	NA
2606020:2606039	attL	NA	NA	NA	NA
WP_160629071.1\|2606495_2606747_-	CopG family transcriptional regulator	NA	NA	NA	NA
WP_160630100.1\|2606903_2608646_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_160629072.1\|2608671_2610459_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_160629073.1\|2610470_2610863_-	(2Fe-2S) ferredoxin domain-containing protein	NA	NA	NA	NA
WP_160629074.1\|2610866_2611415_-	ATP-binding protein	NA	NA	NA	NA
WP_160629075.1\|2611419_2611887_-	NAD(P)H-dependent oxidoreductase subunit E	NA	NA	NA	NA
WP_160629076.1\|2612187_2612811_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_160629077.1\|2612836_2613337_+	molybdenum cofactor carrier	NA	NA	NA	NA
WP_160629078.1\|2613390_2614572_+	PAS domain S-box protein	NA	NA	NA	NA
WP_160629079.1\|2614568_2615927_+	response regulator	NA	NA	NA	NA
WP_160629080.1\|2615996_2617826_+	hypothetical protein	NA	NA	NA	NA
WP_160629081.1\|2617840_2618779_+\|tRNA	methionyl-tRNA formyltransferase	M4QRX9	Synechococcus_phage	1.7e-15	31.9
WP_160629082.1\|2618717_2620841_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_160629083.1\|2620852_2620942_-	AURKAIP1/COX24 domain-containing protein	NA	NA	NA	NA
WP_160629084.1\|2620964_2621837_-	ATP phosphoribosyltransferase	A0A1V0SIZ6	Klosneuvirus	7.3e-05	26.6
WP_160629085.1\|2621975_2622605_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_160629086.1\|2622760_2623369_-	NAAT family transporter	NA	NA	NA	NA
WP_160629087.1\|2623377_2626911_-	chromosome segregation protein SMC	NA	NA	NA	NA
WP_160629088.1\|2627151_2628561_-	Do family serine endopeptidase	A0A1B1IT49	uncultured_Mediterranean_phage	3.8e-27	30.7
WP_160629089.1\|2628710_2629325_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_160629090.1\|2629338_2629749_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	3.1e-30	52.9
WP_160629091.1\|2629794_2631297_-\|protease	trypsin-like serine protease	S4VWN0	Pandoravirus	5.1e-06	27.3
WP_160629092.1\|2631305_2631683_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_160629093.1\|2631776_2632466_-	7-cyano-7-deazaguanine synthase QueC	E7DN66	Pneumococcus_phage	2.2e-33	42.3
WP_160629094.1\|2632499_2633273_-	4Fe-4S cluster-binding domain-containing protein	NA	NA	NA	NA
WP_160629095.1\|2633428_2634466_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_160630101.1\|2634514_2634934_+	hypothetical protein	NA	NA	NA	NA
WP_160625940.1\|2635064_2636282_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.0e-57	36.5
WP_160629096.1\|2636667_2637699_-	hypothetical protein	NA	NA	NA	NA
WP_160629097.1\|2638258_2639611_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.4e-55	42.4
WP_160629098.1\|2639897_2641067_-	hypothetical protein	NA	NA	NA	NA
WP_160629099.1\|2641259_2641565_+	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA
WP_160629100.1\|2641568_2644019_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_160629101.1\|2644081_2646355_+	hypothetical protein	NA	NA	NA	NA
2645328:2645347	attR	NA	NA	NA	NA
WP_160629102.1\|2646385_2647036_-	hypothetical protein	NA	NA	NA	NA
WP_160629103.1\|2647228_2648488_+	DEAD/DEAH box helicase	A0A1B1IS59	uncultured_Mediterranean_phage	1.8e-49	32.3
WP_160629104.1\|2648567_2648912_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_160629105.1\|2649042_2649399_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_160629106.1\|2649423_2649621_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_160629107.1\|2649706_2650651_-	serine acetyltransferase	NA	NA	NA	NA
WP_160629108.1\|2650890_2652066_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_160629109.1\|2652427_2653483_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2988662 : 3000146

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160629354.1\|2988662_2990639_+	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	3.2e-32	29.8
WP_160629355.1\|2990730_2991783_+	GDP-mannose 4,6-dehydratase	A0A0E3F7G9	Synechococcus_phage	1.3e-128	66.4
WP_160630116.1\|2992213_2993182_+	NAD-dependent epimerase/dehydratase family protein	A0A1J0F9I6	Only_Syngen_Nebraska_virus	4.0e-97	53.1
WP_160629356.1\|2993188_2994064_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.4e-32	36.3
WP_160629357.1\|2994060_2995140_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.2e-97	50.3
WP_160629358.1\|2995223_2995577_+	four helix bundle protein	NA	NA	NA	NA
WP_160630117.1\|2995703_2996585_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	1.0e-99	63.8
WP_160629359.1\|2997064_2997607_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.8e-47	55.8
WP_160629360.1\|2997789_2999115_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	A7IWZ0	Paramecium_bursaria_Chlorella_virus	3.4e-22	27.6
WP_160630118.1\|2999153_3000146_+	NAD-dependent epimerase/dehydratase family protein	A0A2K9L0I7	Tupanvirus	1.5e-78	46.6

DBSCAN-SWA_5

3530418 : 3601687

Paramecium_bursaria_Chlorella_virus(16.67%)

tRNA,transposase,protease,integrase

attL 3594622:3594636|attR 3600525:3600539

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160629776.1\|3530418_3531168_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_160629777.1\|3531169_3531847_-	ribonuclease III	M1H375	Paramecium_bursaria_Chlorella_virus	1.4e-16	36.7
WP_160629778.1\|3531984_3532800_-	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA
WP_160629779.1\|3533032_3534826_-\|tRNA	aspartate--tRNA ligase	A0A2I2L4Y8	Orpheovirus	6.1e-06	32.6
WP_160629780.1\|3534843_3536091_-\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_160629781.1\|3536104_3536386_-	integration host factor subunit beta	NA	NA	NA	NA
WP_160629782.1\|3536499_3537093_-	hypothetical protein	NA	NA	NA	NA
WP_160629783.1\|3537118_3538624_-\|tRNA	proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	4.4e-82	36.0
WP_160629784.1\|3538918_3539365_-	hypothetical protein	NA	NA	NA	NA
WP_160630138.1\|3539361_3540216_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA
WP_160629785.1\|3540275_3541070_-	TIM barrel protein	NA	NA	NA	NA
WP_160629786.1\|3541132_3542116_-	phosphoglycerate dehydrogenase	NA	NA	NA	NA
WP_160629787.1\|3542295_3544257_-	FAD-binding protein	NA	NA	NA	NA
WP_160629788.1\|3544326_3545088_-	hypothetical protein	NA	NA	NA	NA
WP_160629789.1\|3545180_3545819_-	hypothetical protein	NA	NA	NA	NA
WP_160629790.1\|3545829_3546879_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_160629791.1\|3546991_3550360_-	hypothetical protein	NA	NA	NA	NA
WP_160629792.1\|3550461_3551178_-	hypothetical protein	NA	NA	NA	NA
WP_160629793.1\|3551199_3553176_-	hypothetical protein	NA	NA	NA	NA
WP_160629794.1\|3553211_3554450_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_160629795.1\|3554439_3556671_-	sodium/solute symporter	NA	NA	NA	NA
WP_160629796.1\|3556788_3559992_-	hypothetical protein	NA	NA	NA	NA
WP_160629797.1\|3560268_3562887_+	hypothetical protein	NA	NA	NA	NA
WP_160629798.1\|3562961_3563783_+	DUF1961 family protein	NA	NA	NA	NA
WP_160629799.1\|3563843_3564863_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_160629800.1\|3565006_3565822_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA
WP_160629801.1\|3565840_3566614_-	3-ketoacyl-ACP reductase	NA	NA	NA	NA
WP_160629802.1\|3566613_3567981_-	flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
WP_160629803.1\|3568066_3568615_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_160629804.1\|3568801_3569350_-	hypothetical protein	NA	NA	NA	NA
WP_160629805.1\|3569366_3569807_-	hypothetical protein	NA	NA	NA	NA
WP_160629806.1\|3569806_3570418_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_160629807.1\|3570443_3571154_-	hypothetical protein	NA	NA	NA	NA
WP_160629808.1\|3571226_3572567_-	(d)CMP kinase	NA	NA	NA	NA
WP_160629809.1\|3572563_3573868_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_160629810.1\|3573864_3574722_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA
WP_160629811.1\|3574895_3576212_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_160629812.1\|3576208_3578101_+	response regulator	A0A1V0SGX0	Hokovirus	5.0e-51	34.0
WP_160629813.1\|3578119_3580576_-	AAA domain-containing protein	A0A0A8J958	Klebsiella_phage	5.4e-114	36.3
WP_160629814.1\|3580752_3581586_+	hypothetical protein	NA	NA	NA	NA
WP_160629815.1\|3581613_3583290_-	DUF4445 domain-containing protein	NA	NA	NA	NA
WP_160629816.1\|3583359_3583983_-	cobalamin-binding protein	NA	NA	NA	NA
WP_160629817.1\|3584140_3585364_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_160629818.1\|3585402_3586188_-	hypothetical protein	NA	NA	NA	NA
WP_160629819.1\|3586256_3586556_-	hypothetical protein	NA	NA	NA	NA
WP_160629820.1\|3586690_3587452_-	hypothetical protein	NA	NA	NA	NA
WP_160629821.1\|3587448_3588273_-	hypothetical protein	NA	NA	NA	NA
WP_160629822.1\|3588337_3589609_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_160629823.1\|3589681_3591895_+	ammonia-forming cytochrome c nitrite reductase subunit c552	NA	NA	NA	NA
WP_160629824.1\|3591901_3592996_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_160629825.1\|3592992_3593877_-	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_160629329.1\|3594129_3595305_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
3594622:3594636	attL	NA	NA	NA	NA
WP_160629826.1\|3595388_3595706_-	hypothetical protein	NA	NA	NA	NA
WP_160629827.1\|3596303_3598778_-	glycosyl transferase	NA	NA	NA	NA
WP_160629828.1\|3599060_3599375_+\|transposase	transposase	NA	NA	NA	NA
WP_160629829.1\|3599371_3599851_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_160625940.1\|3600017_3601235_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.0e-57	36.5
3600525:3600539	attR	NA	NA	NA	NA
WP_160629830.1\|3601453_3601687_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047593

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection