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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP047602 Thermoanaerobacterium aotearoense strain SCUT27 chromosome, complete genome 4 crisprs cas7,cas5,cas3,cas4,cas1,cas2,csa3,DEDDh,DinG,RT,cas6 0 6 7 0

Results visualization

1. NZ_CP047602
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047602_1 150846-154532 TypeI-B NA
55 spacers
cas3,cas5,cas7,cas8b1,cas4,cas1,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047602_2 804017-804227 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047602_3 1071150-1071248 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047602_4 2635195-2635553 Unclear NA
5 spacers
cas3,cas7,cas6

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP047602_1 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT 153334-153367 34 NZ_CP021429 Acinetobacter pittii strain HUMV-6483 plasmid p11, complete sequence 89427-89460 8 0.765
NZ_CP047602_1 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT 153334-153367 34 NZ_CP039041 Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence 61884-61917 8 0.765
NZ_CP047602_1 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT 153334-153367 34 NZ_MG954377 Acinetobacter baumannii strain SGH9601 plasmid pS21-2, complete sequence 88661-88694 8 0.765
NZ_CP047602_1 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT 153334-153367 34 NC_009425 Enterobacter sp. 638 plasmid pENTE01, complete sequence 6404-6437 8 0.765
NZ_CP047602_1 1.12|151605|38|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT 151605-151642 38 KU878088 Bacillus phage AR9, complete genome 211283-211320 9 0.763
NZ_CP047602_1 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT 153334-153367 34 NC_031107 Erwinia phage vB_EamM_Asesino, complete genome 190888-190921 9 0.735
NZ_CP047602_1 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT 153334-153367 34 AP013405 Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S42-C63 17407-17440 9 0.735
NZ_CP047602_1 1.39|153398|38|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT 153398-153435 38 KX171213 Staphylococcus phage vB_SscM-2, complete genome 4870-4907 9 0.763
NZ_CP047602_1 1.39|153398|38|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT 153398-153435 38 NC_047767 Staphylococcus phage vB_SscM-1, complete genome 4870-4907 9 0.763
NZ_CP047602_1 1.14|151740|36|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT 151740-151775 36 KT997873 Uncultured Mediterranean phage uvDeep-CGR2-KM21-C368, complete genome 9652-9687 10 0.722
NZ_CP047602_1 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT 153334-153367 34 MN694478 Marine virus AFVG_250M504, complete genome 10675-10708 10 0.706
NZ_CP047602_1 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT 153334-153367 34 MN694270 Marine virus AFVG_250M505, complete genome 10793-10826 10 0.706
NZ_CP047602_1 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT 153334-153367 34 MN694656 Marine virus AFVG_250M501, complete genome 10405-10438 10 0.706
NZ_CP047602_1 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT 153334-153367 34 MN693919 Marine virus AFVG_250M503, complete genome 25482-25515 10 0.706
NZ_CP047602_1 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT 153334-153367 34 MN694712 Marine virus AFVG_250M502, complete genome 25481-25514 10 0.706
NZ_CP047602_1 1.36|153201|37|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT 153201-153237 37 NC_048677 Lactobacillus phage LpeD, complete genome 79938-79974 11 0.703
NZ_CP047602_1 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT 153334-153367 34 NZ_AP018263 Calothrix sp. NIES-4071 plasmid plasmid8 DNA, complete genome 3046-3079 11 0.676
NZ_CP047602_1 1.43|153668|38|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT 153668-153705 38 MN693779 Marine virus AFVG_250M346, complete genome 53552-53589 11 0.711

1. spacer 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021429 (Acinetobacter pittii strain HUMV-6483 plasmid p11, complete sequence) position: , mismatch: 8, identity: 0.765

aaaataaacaaaaaaataaagcaggcttaacctg	CRISPR spacer
taagtaagcaaaaaaataaagcaggaccaacttc	Protospacer
 **.***.***************** ..***.* 

2. spacer 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039041 (Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

aaaataaacaaaaaaataaagcag-gcttaacctg	CRISPR spacer
aaaataaagaaaataataaagcagcgagtaataa-	Protospacer
******** **** ********** *  ***.   

3. spacer 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG954377 (Acinetobacter baumannii strain SGH9601 plasmid pS21-2, complete sequence) position: , mismatch: 8, identity: 0.765

aaaataaacaaaaaaataaagcaggcttaacctg	CRISPR spacer
taagtaagcaaaaaaataaagcaggaccaacttc	Protospacer
 **.***.***************** ..***.* 

4. spacer 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT matches to NC_009425 (Enterobacter sp. 638 plasmid pENTE01, complete sequence) position: , mismatch: 8, identity: 0.765

aaaataaacaaaaaaataaagcaggc--ttaacctg	CRISPR spacer
aaaatatacaataaaataaagcagataagtgacc--	Protospacer
****** **** ************..   *.***  

5. spacer 1.12|151605|38|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT matches to KU878088 (Bacillus phage AR9, complete genome) position: , mismatch: 9, identity: 0.763

ataaatgtttttgaaagtgattcttttaatatttcttc	CRISPR spacer
aatgaagtttttgaaggtgatacttttaatatttatgg	Protospacer
*  .* *********.***** ************ *  

6. spacer 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT matches to NC_031107 (Erwinia phage vB_EamM_Asesino, complete genome) position: , mismatch: 9, identity: 0.735

aaaataaacaaaaaaataaagcaggcttaacctg	CRISPR spacer
aaaataaacaaaaaaagaaagcagtacccactcc	Protospacer
**************** *******  .. **.. 

7. spacer 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT matches to AP013405 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S42-C63) position: , mismatch: 9, identity: 0.735

aaaataaacaaaaaaataaagcaggcttaacctg	CRISPR spacer
taaataaacataataataaagcaggcagatacgt	Protospacer
 ********* ** ************  *  *  

8. spacer 1.39|153398|38|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT matches to KX171213 (Staphylococcus phage vB_SscM-2, complete genome) position: , mismatch: 9, identity: 0.763

ataactcctttccttaactctatatatataataacata	CRISPR spacer
ttgtggctgttccttaactctatatatagaataacatg	Protospacer
 *.   *. ******************* ********.

9. spacer 1.39|153398|38|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT matches to NC_047767 (Staphylococcus phage vB_SscM-1, complete genome) position: , mismatch: 9, identity: 0.763

ataactcctttccttaactctatatatataataacata	CRISPR spacer
ttgtggctgttccttaactctatatatagaataacatg	Protospacer
 *.   *. ******************* ********.

10. spacer 1.14|151740|36|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT matches to KT997873 (Uncultured Mediterranean phage uvDeep-CGR2-KM21-C368, complete genome) position: , mismatch: 10, identity: 0.722

gaatactttataggaaaattagcaataacatatcta	CRISPR spacer
aaatactttatagaaaaatttgcaatagatgattct	Protospacer
.************.****** ******.   **.. 

11. spacer 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT matches to MN694478 (Marine virus AFVG_250M504, complete genome) position: , mismatch: 10, identity: 0.706

aaaataaacaaaaaaataaagcaggcttaacctg	CRISPR spacer
aaaataaacaaaaaactaaagaagaaaaaatgaa	Protospacer
*************** ***** **.   **.  .

12. spacer 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT matches to MN694270 (Marine virus AFVG_250M505, complete genome) position: , mismatch: 10, identity: 0.706

aaaataaacaaaaaaataaagcaggcttaacctg	CRISPR spacer
aaaataaacaaaaaactaaagaagaaaaaatgaa	Protospacer
*************** ***** **.   **.  .

13. spacer 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT matches to MN694656 (Marine virus AFVG_250M501, complete genome) position: , mismatch: 10, identity: 0.706

aaaataaacaaaaaaataaagcaggcttaacctg	CRISPR spacer
aaaataaacaaaaaactaaagaagaaaaaatgaa	Protospacer
*************** ***** **.   **.  .

14. spacer 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT matches to MN693919 (Marine virus AFVG_250M503, complete genome) position: , mismatch: 10, identity: 0.706

aaaataaacaaaaaaataaagcaggcttaacctg	CRISPR spacer
aaaataaacaaaaaactaaagaagaaaaaatgaa	Protospacer
*************** ***** **.   **.  .

15. spacer 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT matches to MN694712 (Marine virus AFVG_250M502, complete genome) position: , mismatch: 10, identity: 0.706

aaaataaacaaaaaaataaagcaggcttaacctg	CRISPR spacer
aaaataaacaaaaaactaaagaagaaaaaatgaa	Protospacer
*************** ***** **.   **.  .

16. spacer 1.36|153201|37|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT matches to NC_048677 (Lactobacillus phage LpeD, complete genome) position: , mismatch: 11, identity: 0.703

aaagaaataaataagcaaaagtataaaaaaagaaaaa	CRISPR spacer
tatcaattaaataagcaaaaggataaaaaattatccg	Protospacer
 *  ** ************** ********  *   .

17. spacer 1.38|153334|34|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018263 (Calothrix sp. NIES-4071 plasmid plasmid8 DNA, complete genome) position: , mismatch: 11, identity: 0.676

aaaataaacaaaaaaataaagcaggcttaacctg	CRISPR spacer
aaaataaccaaaaaattaaagcagttggaggtac	Protospacer
******* ******* ******** .  *. .  

18. spacer 1.43|153668|38|NZ_CP047602|PILER-CR,CRISPRCasFinder,CRT matches to MN693779 (Marine virus AFVG_250M346, complete genome) position: , mismatch: 11, identity: 0.711

tggtaaagttacagcaataaatggttcaaatattactc	CRISPR spacer
aggtaaagttactgcaacaaatggttcaacatctgtaa	Protospacer
 *********** ****.***********   .*..  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3906 : 65251 58 Bacillus_phage(27.78%) transposase,tRNA,protease NA
DBSCAN-SWA_2 77386 : 108741 27 Bacillus_phage(44.44%) transposase,integrase,protease attL 81139:81157|attR 84421:84439
DBSCAN-SWA_3 667613 : 679018 11 Synechococcus_phage(22.22%) NA NA
DBSCAN-SWA_4 790248 : 829086 57 Bacillus_phage(22.22%) portal,capsid,tail,integrase,terminase,protease,tRNA,head attL 804293:804352|attR 838757:838849
DBSCAN-SWA_5 1383400 : 1393139 10 Wolbachia_phage(16.67%) tRNA NA
DBSCAN-SWA_6 2468326 : 2478448 9 Hokovirus(28.57%) NA NA
DBSCAN-SWA_7 2641526 : 2650395 8 Staphylococcus_phage(50.0%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage