CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047653	Bombella sp. KACC 21507 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP047652	Bombella sp. KACC 21507 chromosome, complete genome	4 crisprs	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,DEDDh	0	7	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047652_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047652_1

941422-941754

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCGTGCGGGGATGAACC	PILER-CR
GTGTTCCCCGCGCGTGCGGGGATGAACC	CRISPRCasFinder
GTGTTCCNCGCGCNTGCGGGGATGAACC	CRT

5 spacers

The CRISPR arrays of NZ_CP047652_1

>merge|NZ_CP047652|1|941422-941754|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCGTGCGGGGATGAACCGGGTAACGATCAGGAGCGCGGGAGTTTGTAGAGGTGTTCCCCGCGCGTGCGGGGATGAACCTTTCTGTGCCAATAGTGATGCGTTGTATTGAGCGTGTTCCCCGCGCGTGCGGGGATGAACCACTGACACTAGACGCAACGGAAGACGCGCTCTGGTGTTCCCCGCGCGTGCGGGGATGAACCTTTAATCCGTTTTTCTCCCGGTAATCCTCAAAAGTGTTCCTCGCGCATGCGGGGATGAACCAAACTCATTGCTGGTTACGCGTCCACAACTGGCATGTTTTTCGCTTATGCGATGATGAATC

>NZ_CP047652|1|1|941422-941632|PILER-CR
GTGTTCCCCGCGCGTGCGGGGATGAACC	GGGTAACGATCAGGAGCGCGGGAGTTTGTAGAG
GTGTTCCCCGCGCGTGCGGGGATGAACC	TTTCTGTGCCAATAGTGATGCGTTGTATTGAGC
GTGTTCCCCGCGCGTGCGGGGATGAACC	ACTGACACTAGACGCAACGGAAGACGCGCTCTG
GTGTTCCCCGCGCGTGCGGGGATGAACC

>NZ_CP047652|1|1|941422-941693|CRISPRCasFinder
GTGTTCCCCGCGCGTGCGGGGATGAACC	GGGTAACGATCAGGAGCGCGGGAGTTTGTAGAG
GTGTTCCCCGCGCGTGCGGGGATGAACC	TTTCTGTGCCAATAGTGATGCGTTGTATTGAGC
GTGTTCCCCGCGCGTGCGGGGATGAACC	ACTGACACTAGACGCAACGGAAGACGCGCTCTG
GTGTTCCCCGCGCGTGCGGGGATGAACC	TTTAATCCGTTTTTCTCCCGGTAATCCTCAAAA
GTGTTCCTCGCGCATGCGGGGATGAACC

>NZ_CP047652|1|1|941422-941754|CRT
GTGTTCCCCGCGCGTGCGGGGATGAACC	GGGTAACGATCAGGAGCGCGGGAGTTTGTAGAG
GTGTTCCCCGCGCGTGCGGGGATGAACC	TTTCTGTGCCAATAGTGATGCGTTGTATTGAGC
GTGTTCCCCGCGCGTGCGGGGATGAACC	ACTGACACTAGACGCAACGGAAGACGCGCTCTG
GTGTTCCCCGCGCGTGCGGGGATGAACC	TTTAATCCGTTTTTCTCCCGGTAATCCTCAAAA
GTGTTCCTCGCGCATGCGGGGATGAACC	AAACTCATTGCTGGTTACGCGTCCACAACTGGC
ATGTTTTTCGCTTATGCGATGATGAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047652.1\|WP_160618645.1\|933314_933794_-\|dUTP-diphosphatase	unknown	unknown	gnl\|CDD\|234802
NZ_CP047652.1\|WP_160618647.1\|934996_935782_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NZ_CP047652.1\|WP_160618657.1\|957036_957540_+\|heme-binding-protein	unknown	unknown	gnl\|CDD\|377163
NZ_CP047652.1\|WP_160619438.1\|955564_956785_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
NZ_CP047652.1\|WP_160618648.1\|935812_936664_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
NZ_CP047652.1\|WP_160618649.1\|936768_937035_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP047652.1\|WP_160618650.1\|937261_938788_+\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|273037
NZ_CP047652.1\|WP_160618582.1\|943720_944137_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160618643.1\|930378_931704_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224041
NZ_CP047652.1\|WP_160618658.1\|957683_959759_+\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|224396
NZ_CP047652.1\|WP_160618654.1\|949739_951071_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184642
NZ_CP047652.1\|WP_160618646.1\|933810_934995_-\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|235513
NZ_CP047652.1\|WP_160618655.1\|953068_953680_-\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|224198
NZ_CP047652.1\|WP_160618652.1\|940021_941164_+\|DNA-replication/repair-protein-RecF	unknown	unknown	gnl\|CDD\|234608
NZ_CP047652.1\|WP_160618651.1\|938875_940000_+\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541
NZ_CP047652.1\|WP_160618653.1\|948773_949712_+\|DUF3108-domain-containing-protein	unknown	unknown	gnl\|CDD\|378635
NZ_CP047652.1\|WP_160618659.1\|965067_965556_+\|bacterioferritin	unknown	unknown	gnl\|CDD\|153099
NZ_CP047652.1\|WP_160619439.1\|963440_964691_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340904
NZ_CP047652.1\|WP_160618644.1\|931700_933266_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223673
NZ_CP047652.1\|WP_160618656.1\|953954_954662_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584

Protein	Function_ID	Function_description	E-value
NZ_CP047652.1\|WP_160618645.1\|933314_933794_-\|dUTP-diphosphatase	gnl\|CDD\|234802	PRK00601, dut, dUTP diphosphatase.	1.32971e-78
NZ_CP047652.1\|WP_160618647.1\|934996_935782_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	2.51733e-127
NZ_CP047652.1\|WP_160618657.1\|957036_957540_+\|heme-binding-protein	gnl\|CDD\|377163	pfam03928, Haem_degrading, Haem-degrading. Haem_bdg is a bacterial protein that is up-regulated in response to haemin- and peroxide-based oxidative stress. It interacts with the SenS/SenR two-component signal transduction system. Iron binds to surface-exposed lysine residues of an octomeric assembly of the protein.	2.3478e-21
NZ_CP047652.1\|WP_160619438.1\|955564_956785_+\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.28377e-100
NZ_CP047652.1\|WP_160618648.1\|935812_936664_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	1.82271e-128
NZ_CP047652.1\|WP_160618649.1\|936768_937035_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	3.5391e-28
NZ_CP047652.1\|WP_160618650.1\|937261_938788_+\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|273037	TIGR00362, DnaA, chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP047652.1\|WP_160618644.1\|931700_933266_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.48397e-10
NZ_CP047652.1\|WP_160618643.1\|930378_931704_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.347e-76
NZ_CP047652.1\|WP_160618658.1\|957683_959759_+\|DUF262-domain-containing-protein	gnl\|CDD\|224396	COG1479, COG1479, Uncharacterized conserved protein [Function unknown].	1.37517e-40
NZ_CP047652.1\|WP_160618654.1\|949739_951071_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184642	PRK14353, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NZ_CP047652.1\|WP_160618646.1\|933810_934995_-\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|235513	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated.	0
NZ_CP047652.1\|WP_160618655.1\|953068_953680_-\|LysE-family-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	1.65576e-59
NZ_CP047652.1\|WP_160618652.1\|940021_941164_+\|DNA-replication/repair-protein-RecF	gnl\|CDD\|234608	PRK00064, recF, recombination protein F; Reviewed.	3.9613e-110
NZ_CP047652.1\|WP_160618651.1\|938875_940000_+\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	1.18449e-156
NZ_CP047652.1\|WP_160618653.1\|948773_949712_+\|DUF3108-domain-containing-protein	gnl\|CDD\|378635	pfam11306, DUF3108, Protein of unknown function (DUF3108). This is a bacterial family of putative lipoproteins. Structure 3fzx, the first structural template for this large family including several homologs in the human gut microbiome and in metagenomic datasets, folds into a beta barrel that topologically looks like a small-scale porin (such as FepA). Bacteroides fragilis glyA is a putative exported protein, and this fold is of the YmcC-like type, with a predicted signal peptide SpI cleavage site AGAMA\|QNQDC, and a Phobius server prediction of non-cytoplasmic localization for amino acids 21-236. The possibility of it being a membrane protein can be ruled out by the hydrophilic nature of the solvent exposed surface outside the barrels. Analysis of sequence conservation suggests that an area near Glu172/Trp206 is potentially interesting. These two residues are also conserved in Dali hit Structure 2in5, a hypothetical lipoprotein classified as a new YmcC-like fold in SCOP (SCOP:159271, with a 12-stranded meander beta-sheet folded into a deformed beta-barrel) despite large structural differences between the two structures, suggesting similarity in function.	0.00236911
NZ_CP047652.1\|WP_160618659.1\|965067_965556_+\|bacterioferritin	gnl\|CDD\|153099	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) bestowing ferroxidase activity.	1.19146e-78
NZ_CP047652.1\|WP_160619439.1\|963440_964691_-\|MFS-transporter	gnl\|CDD\|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.44304e-47
NZ_CP047652.1\|WP_160618656.1\|953954_954662_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	2.98909e-26

>NZ_CP047652.1|WP_160618652.1|940021_941164_+|DNA-replication/repair-protein-RecF
MRLKRLTLTDFRNYERCVWEPKAPIAVLTGENGSGKTNLLEAISLLSPGRGLRNAPLNQFYRQNAPHSQTVQWGIAAQLENRGQEFSLSTGSQPRATTQLSHTKNARRVFLIDGEAKRNQSEIAAIARCVWLTPQMDRLFTETTSGRRRFFDRLVMGLYPDHASQMAAHERSVMSRNRLLTTPHPDALWLNSIEESISRHAVAATAARMSFIERMNGLSLFEKDFPCTNIIIHCEIAALLKNHPALYVEDWLREQLKTSRETDAEKASTSYGVHKSDFSLIDRATKRSAALSSSGQQKLMLLGVILHQALLVHETWGTMPFLLLDEPLVHLDKSKRGALLTTLTHLKSNVFLTGTEYENFEPIKSQAAFYTVKNGFIQSR
>NZ_CP047652.1|WP_160618651.1|938875_940000_+|DNA-polymerase-III-subunit-beta
MRFKADRAPLLRALAHIHGVAEKRNTIPILANVLLNYDGNTLKLTGTDMEIAVVEEIPAPGGEKGSTTVPASVLFEIVRKLPDSESIEFTQGETDTPLTLRAGHYATELNVLPIDDFPAMVAGELPHNFKIPVLALRSLIDRTKFAMSNEETRYYLNGIYLHVKDDNGTKKLRSVATDGHRLALVDAELPEGASTIPGVIIPRKTVTELRKLLDENDAEVEVALSDTRIQFKVSSVLLTSKLIDGNFPEYERVIPKDNKRCLRISKQALASAVGRVAAISQERSRPIKLTLGQNRLTLSATSPDQGIAQEELGENSVTYNSEPLEIGFQARYLTDITDQIDAEAEFSFADNASPTLIQDTQHLSALFVLMPIRV
>NZ_CP047652.1|WP_160618650.1|937261_938788_+|chromosomal-replication-initiator-protein-DnaA
MCQNSNGAVLQNIVAFDREAEKQKVEKTQSQDVMTSSAKSLLEAAWARIREKLKTEVGEVEYRTWLRQIVLGPLDENEIVLYMPSRFLRDWVREQYGERLQTLWRHETPIVQRVELQVKKESSQTLGAAPSSESTEGAPAFIIADDDHDGAVTGQDSNLLHAHEAKNDLAAPLDPRFTFDSFVVGKPNEFAYACARRVAEKPSSPGFNPLFLYGGVGLGKTHLMHAIGSELTKTGTVSVAYMSAEKFMYRFIASIRSQSTMEFKEQLRSVDVLMIDDLQFLIGKDNTQEEFFHTFNALVDAGRQIIVSADKSPSDLSGLEDRLRTRLGCGMVADIHATTFELRLSILEAKARASGTPVPSKVLEYLAHKITSNVRELEGALNRLIAHADLVNRPVTLESTQDVLKDMLKAHERRVTIDEIQRKVAEHWNIRLTDMSSARRARAVARPRQVAMYLAKNLTSRSLPEIGRKFGNRDHTTVMHAVARVAELMEQDPSFAESVELLKRMLES
>NZ_CP047652.1|WP_160618649.1|936768_937035_+|30S-ribosomal-protein-S20
MANNPSARKRIRQNVRRRLRNTARLSRMRTFVKNVEKAILAGNKEAASEALRLAQPEMQRAASKGVISKNTISRKISRLSAKIKTLAA
>NZ_CP047652.1|WP_160618648.1|935812_936664_+|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVETIMQGLVPVLKGKTITHIAINRPDLRKPFPPGLKETLEKHSVIQLRRRAKYILIDFSSGHSLLIHLGMSGRIFIDHPPLPPSLRKHEHFSLTTQDGLKIALIDPRRFGLVTFFATEKEKTFPLLAHLGLEPLEPEALKTEILAAKINHKRSPIKSILLDQRIIAGLGNIYVCEALFRASIHPERSASSLKETEIEALCNVIPVILREALAAGGSSLRDYVKTDGQKGGFQTLHQVYGKEGEQCPSCPGLPSCEGIKRLLQSGRSSFYCPYHQKLF
>NZ_CP047652.1|WP_160618647.1|934996_935782_-|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MIDSAHTNSSSSSASSHEDMTDFGFKHVPREEKKPLVRQVFESVAGKYDIMNDAMSLGIHRIWKRIFITELAPRSNLKLLDLAGGTGDITFGWLKRGGGHAILSDINPAMLEVGRERAIKEGLIDRLDVKEIDAESLPFPDASFDRVSIAFGLRNCTDKDAVLREVRRVLKPGGRFCCLEFSKVAVAALSPVYDLWSFQILPKMGKMIAGDSESYQYLAESIRMFPDQDRLADMMREAGLENVKYQNLSGGIVAIHSGWRL
>NZ_CP047652.1|WP_160618646.1|933810_934995_-|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MKHILLIIGGGIAAYKSLEIARQLKKKGYDIIPVMTASAEAFVTKLSVEALCGNEVHSELFAPGQESKINHIALARMADAILVCPATANLLARMAHGLADDLATTILLAAKAPIFVAPAMNVRMWEHPATQANIALLKQRDVHFIGPAEGEMACGDYGLGRLSPIEDIICVLEGHLKLPAPLLNKHFLVTAGPTCEPIDPVRYISNHSSGLQGYAIAEALAKLGAKVTLVSGPVSLATPLHVDRVNVVTAREMLDQCLKALPADGMVAVAAVSDWRAEQEHSEKLKKGHQDLTKLKLVENPDILATICRHQKRPALVVGFAAETENVLDYAREKRERKGCDWLIANDVKAGVFGSDRNQVSILDGHAIETWPMQTKKEIAARLAQKISAYFSQL
>NZ_CP047652.1|WP_160618645.1|933314_933794_-|dUTP-diphosphatase
MDSHDNSSFVKVNVVTLPHFEGLDLPHYATSGAAGVDFVAAITDSVTLKAGERTVIPTGLKAAIPAGYELQIRPRSGLALKHGIMLPNTPGTIDEDYRGEIGIIIMNGGSEPFTIERGMRIAQGILAPVVRLAWQICETLDDTQRGEKGFGSTGHLKRS
>NZ_CP047652.1|WP_160618644.1|931700_933266_-|ABC-transporter-permease-subunit
MRRSLDFSSDLRRIGHYLMIRERSIKNGAFLVFSVFAVIIFSARYWLPFLGITWPFTELSLFWQHSFWYDCATSFLEACVAFFSAIIVVLGLLICSSFSAFFRSSLRFFVKILSIIPAIALVGFFAFIFNGFWTVALIASSGLIVRCVAAVLNIEGQIPPLLVKSARALRLKPWQQFWRLQIPIAYPAMARAIALDMPNFWVRFLGAEWLISSWGASGERGIGGHVLASFKASDLIGFCKTTAATIIFVAFFHRLFVKPLLKRVKRYDVLSSSLIKLTNIELYSRELGKSWSNLTIFILCLLISLIAFSMGSGSVLPLLLNGLSSLILWAVSLGLALALWVMVGGLTLTSSRNFRFRARHWAYFSLIFPCFILFPLLGSFLPSVFLLALAVQGAYGESVFYRDEDVTRNKLLEMAYRLRLSKYVIWFRVKLPLLLPSLARGCLLASYPLWNLILLTGIMLPSHHLLWEHGLGTILLNAVRTGNYWSQFGIFAFVTALSYGLTFFFLLPLCFHIHRRFRMHS
>NZ_CP047652.1|WP_160618643.1|930378_931704_-|ATP-binding-cassette-domain-containing-protein
MTTLLRLEDCTQASRKSRVQDIVVVEKVSLAVKEGEILGLVGRSGSGKSSLLDIMGGLDQPVGGQIYWKDRPVKPKDFEHVSIVLQNDALFPWLTISENIRLALEATSLSAKEKDERVAHITEIMDLDGYEGAFPRELSEAFCQRTALARALVRNPDLLLLDEPFLNLELLSAENLRTDLIELWSERRLQPLKAMVLATHAIEEAVLMCDRILLFSTSPGKISFEIPVPFAHPRNRQDASFRAFVDQVYSLMTPRAPTISEAEILEISANNSAKELEDENFIPLPDLSIETLAGLIEVLGNEPFSAHADLPELAQRLQMTLDDLLPLGETLQLLELAELEDGDIILTHRGRLFVEGDADARRDIMRTALLHALPLLRHIRNILDERSNHSLSAEPIRALLEKTMSENYARQTLNTVISWGRYAGIFIYDEESDRLLLEDED
>NZ_CP047652.1|WP_160618582.1|943720_944137_+|hypothetical-protein
MANPGGSMSYSVISSGFSPLERYSSQFYDAPANLFSYYVTIYIKTRIYFRTKKEVLERRYGRGAISLFRFLRKSDIIPHSSFSTHGCKMASHFTKLAVQAISAGSFGVWQDSYRRLYFSKIFEPFKAYEQKKMMKGIS
>NZ_CP047652.1|WP_160618653.1|948773_949712_+|DUF3108-domain-containing-protein
MLKNKVLKLSLFGCYLAGSFMASAAVSRSFAQTMPAHITNSKVPETDSQTKNSAVTLRYAVFVHGLHVLDAEGAYVLKPWGYGGNAHLKTVGLASWFLQLNISAQVEGRFDGTMAVPLDYKAHGLSRKKERSVHIKFDDSGPHIVSLEPKDKERDPLPEAELKHSIDMLSGLATLFQSLAVTGKCDLSGTLYDGLRLTHIEAHGPFADKVPDSHGSYYSGKEAQRCDFEGHQIAGFVKTSHHKDLLRTPQPGKAWFLTLKDYGIVPVKIEFHHPKIGNVEMVMQSVPSSAKMDVPGKKGQMTSPSEKPQTKP
>NZ_CP047652.1|WP_160618654.1|949739_951071_+|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MTPSLTAVILAAGKGTRMRSSKPKAMQPLAHKPMVAYLIDSVARLTDKIIVVIGPDMADLEQAVAPHKVIIQTERKGTGHAALTASEAFGEGDVIILNADNPLVSSETLASLVKLRRTEKAALTVIGMNLDDPAQYGRLVQNQHGEIERIVEYKDATEQERSITLCNAGMICAPASSLRKWLKDITPHNAQNELYLTDIVGFAAKEGSVLCLQADQDELVGINSRAELARAEQLLQKKLRLRAMDNGVTLIDPSSVYFSADTIIEPDVLIEPNVFIGPGVTIKTGAHIKAFSHLEGCVVGENSLIGPYARLRPGTICEEGTHIGNFVELKNTTLGRKSKANHLTYLGDSEIGPNVNIGAGTITCNYDGYFKHKTTIGAHSFIGSNTIMVAPLKIDDNTLIAAGSVLTKDVPSGAMAFGRAQQVNIEGRGSAYKERLKAKKDQS
>NZ_CP047652.1|WP_160618655.1|953068_953680_-|LysE-family-transporter
MYLSAILAGFVTGAGLIMAIGAQNAFILRQGIQRNFVWLVVAICSLGDIVLIFSGVAGMGHLVRTWPVILPVLRFAGAAFLAIYGLMAARRAIIGADALKPANESAGSRKKVLLTCMAFTFLNPHVYLDTMVLVGSLSTHYAGAGKWMFGLGACIASVVWFTALTFGARFLQPIFRKPAAWQLLDAATALFMLFLSAVLIFNF
>NZ_CP047652.1|WP_160618656.1|953954_954662_-|GNAT-family-N-acetyltransferase
MTTHFNEFNQPIGAALPKWKGAKYPDRRSLIGNYSILEPLIAQKHASELFNAYQEAEDQRDWTYLPYGPFPDLESYVSFVRQNEHLKDAIHYAVIDAETKKPVGTVALMRIDPANGVVEIGSVTYSRKMQRTRISTEVMALLSHYVFKELGYRRLEWKCNSFNAPSRAAALRFGFSFEGIFRQALVTKGCNRDTAWFSMLDSEYPEISKAYNNWLDPSNFDDNGQQKTPLARVKP
>NZ_CP047652.1|WP_160619438.1|955564_956785_+|MFS-transporter
MNQPDFTTTQGEHDDANKLIVSVLVGVAVTHACSDFIQSVLPSIYPLLKDNYALTYAQIGMISLIYQLVASILQPWIGLYADKHSMPFLLPGGMIITLLGIGLLAVAPTYHILLLACALIGVGSATFHPEVSRIARMASGGRFGTAQSVFQVGGYVGNACGPLAAALIIIPYGQVSVSWLMLVALLAIFILHYMSRWAKTHGHAKMKKHISSNLRQLSRKEIWTALSVVGLLMFAKFTYIASISNYYTFYLLERFKTPLPTAQLYLFTFLTSVAVGTVIGGPIGDRIGRKAVIWVSFIGVIPFSILMPHANLFWTVILTVCIGLVISSAFSALLVYAQDVFPTRIGMVAGMMFGTMFGISGISAAALGKFADYYGIVTVYDACGFLPFLGFATYLMPETHIKKIKL
>NZ_CP047652.1|WP_160618657.1|957036_957540_+|heme-binding-protein
MKKTALALIFAASSFGSAYAASGVVNIPSIEANIANKLVAEAVNACAAKHLAVTATVVNAAGQRVAMLSGNGAPIDTASISYRKAYTIYSWGTAKHKNTTSELLAAKLVGPEDGSLTTVAGILVLPGGVILKSNGHTIGGLGVSGAPDGMDDEGCAKAAVEKYKSQF
>NZ_CP047652.1|WP_160618658.1|957683_959759_+|DUF262-domain-containing-protein
MKARETNLLNLLKNTPQFIIPIYQRTYSWTEKQCEQLWNDIIDAGSDEKILSHFIGSIVYIESDLQQISSQSSYLIIDGQQRLTTCVLLLEALSRHLNNNEPLDGFSSKKIRNYYLLNPLEDNDMAFKLILTQLDKETLLTLLEQKPLPKDCSINIANNFSFFDKKIKSLDGNLKAVCKGLSKLVIVDVALDRRQDNPQLIFESMNSTGKALSQADLIRNYILMDLDQKKQKYSYEQYWHPMETAFGQENYNNYFDSFMRHYLTMKTGKIPKIDDVYEEFKIYARKKKFASVTNELLLEDIKLFSDYYCAMALGREENKDLSLSFRNLRELKVDVVYPFLLELYDDYKSKILSYEDFLESLRLIESYLFRRSVCGLAANFLNKAFASFGKSLKKHKYLESIKAHLLQLTSQQRFPTDAEFKECFSTRDLYKFRNKNYWLRRLENFGRKECIFDEEYSIEHIMPQNKNLSIQWQKDLGPDWQVIQELWLHNAGNLTLTAYNSEFSDRPFLEKREMEGGFRHSPLWLNQGLGQVEVWNENEIKKRGKRLAERAATLWPYPFLKEDILKTYQKKNAAYSLDDFNSLTEGSFTRSLFDQLRKEILLIDPRVKEKICKIYIAYKAKTNFVDIEADSKKLRLCLNMKFEDLIDPKNMARDVTHIGHHGNGDVEILYNSPSELDDVMKLIRQSFERNS
>NZ_CP047652.1|WP_160619439.1|963440_964691_-|MFS-transporter
MLALLVIYMQDYILKPEHLEHVWGINPLLTLIKYLYNPIGLPALAASIMGLFMAAVSALPLLGGWLADRFIGRTRIIIIGAVLMTFGHGLMSFESSFVFALLCLLIGSSCSSTMKAQVGALYAQDDKRRADAYQLYSLGVQIAVIISPILCAFLGKIAWHWGFLAAGIGMAAGLICYLMGRKWLPPETKKQHKKEVIILSAIEKKRVFLLIMLVFVFAIGAIPNEEIFDGYLLWGKEHYQLTFWGYDFPVSTLLSLDGLISSATAIFVLWFWRFFEKKHNPVAEIWKVFWGSLIASLGPLCLVLAQFFYPAPHTISLWWGVVFHTINDIGFSMVFSIGLALFSRVAPVSLNTLLVSFFTLHLTFSNLMVGKLASQVAVMPGILFWFIHAMAALCATLIFLFCALYFKKLLIPKNVS
>NZ_CP047652.1|WP_160618659.1|965067_965556_+|bacterioferritin
MAIRDPKVIEYLNTQLTNELTAINQYFLHARTLQHWGVTLLGKKEYAESIEEMKHADWLIERILFLGGLPNVQRLNSILIGQSVEEILKCDLKLEEKAIADLREGIAYCEKVQDYVSRDLLLTILKNEEEHEDFIDRQFDLIKQVGIERYIQKNSAPATEQE

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Crispr_ID: NZ_CP047652_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047652_2

1691481-1691874

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCGTGCGGGGATGAACC	PILER-CR
GTGTTCCCCGCGCGTGCGGGGATGAACC	CRISPRCasFinder
GTGTTCCCCGCGCGTGCGGGGATGAACC	CRT

6 spacers

The CRISPR arrays of NZ_CP047652_2

>merge|NZ_CP047652|2|1691481-1691874|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCGTGCGGGGATGAACCTGAGCCTGTACATTGTGGCGGTCGATTTTGATAGTGTTCCCCGCGCGTGCGGGGATGAACCGATCGTTATCATCCTAAAACCTTGTTTTTCTAGGTGTTCCCGCGCGTGCGGGGATGAACCTATGCCATCGGCAGCTATGCCTGTTTTGTGAGAGTGTGCCCCGCGCGTGCGGGGATGAACCATTTTCTGTTTTTTCGACAGTTTCCCGCGCCGGGTGTTCCCCGCGCGTGCGGGGATGAACCTTTATTTCTAGCGTTGCTAGCACCCTATTTATGGTGTTCCCCGCACACGCGGGGATGAACCTGTCCTGTTCTGTTTTAATCTGGGCGTGAGATGGTATTCCCCGAGCAGGCATGGATGAACCT

>NZ_CP047652|2|2|1691481-1691751|PILER-CR
GTGTTCCCCGCGCGTGCGGGGATGAACC	TGAGCCTGTACATTGTGGCGGTCGATTTTGATA
GTGTTCCCCGCGCGTGCGGGGATGAACC	GATCGTTATCATCCTAAAACCTTGTTTTTCTAGGTGTT
CCCGCGCGTGCGGGGATGAACCTATGCC	ATCGGCAGCTATGCCTGTTTTGTGAGAGTGTGC
CCCGCGCGTGCGGGGATGAACCATTTTC	TGTTTTTTCGACAGTTTCCCGCGCCGGGTGTTC
CCCGCGCGTGCGGGGATGAACC

>NZ_CP047652|2|2|1691481-1691874|CRISPRCasFinder
GTGTTCCCCGCGCGTGCGGGGATGAACC	TGAGCCTGTACATTGTGGCGGTCGATTTTGATA
GTGTTCCCCGCGCGTGCGGGGATGAACC	GATCGTTATCATCCTAAAACCTTGTTTTTCTA
GGTGTTCCCGCGCGTGCGGGGATGAACC	TATGCCATCGGCAGCTATGCCTGTTTTGTGAGA
GTGTGCCCCGCGCGTGCGGGGATGAACC	ATTTTCTGTTTTTTCGACAGTTTCCCGCGCCGG
GTGTTCCCCGCGCGTGCGGGGATGAACC	TTTATTTCTAGCGTTGCTAGCACCCTATTTATG
GTGTTCCCCGCACACGCGGGGATGAACC	TGTCCTGTTCTGTTTTAATCTGGGCGTGAGATG
GTATTCCCCGAGCAGGCATGGATGAACCT

>NZ_CP047652|2|2|1691481-1691873|CRT
GTGTTCCCCGCGCGTGCGGGGATGAACC	TGAGCCTGTACATTGTGGCGGTCGATTTTGATA
GTGTTCCCCGCGCGTGCGGGGATGAACC	GATCGTTATCATCCTAAAACCTTGTTTTTCTA
GGTGTTCCCGCGCGTGCGGGGATGAACC	TATGCCATCGGCAGCTATGCCTGTTTTGTGAGA
GTGTGCCCCGCGCGTGCGGGGATGAACC	ATTTTCTGTTTTTTCGACAGTTTCCCGCGCCGG
GTGTTCCCCGCGCGTGCGGGGATGAACC	TTTATTTCTAGCGTTGCTAGCACCCTATTTATG
GTGTTCCCCGCACACGCGGGGATGAACC	TGTCCTGTTCTGTTTTAATCTGGGCGTGAGATG
GTATTCCCCGAGCAGGCATGGATGAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047652.1\|WP_160619201.1\|1695747_1696551_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619498.1\|1680516_1681920_+\|gamma-glutamyltranspeptidase	unknown	unknown	gnl\|CDD\|223482
NZ_CP047652.1\|WP_160619207.1\|1701948_1702206_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619209.1\|1702654_1702963_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619206.1\|1701017_1701392_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223816
NZ_CP047652.1\|WP_160619203.1\|1699057_1699429_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379262
NZ_CP047652.1\|WP_160619193.1\|1681987_1683028_+\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_CP047652.1\|WP_160619198.1\|1687585_1688584_+\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236536
NZ_CP047652.1\|WP_160619208.1\|1702202_1702658_+\|glycoside-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|381599
NZ_CP047652.1\|WP_160619194.1\|1683117_1684143_-\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|177127
NZ_CP047652.1\|WP_160619497.1\|1678597_1679362_-\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|238380
NZ_CP047652.1\|WP_160619199.1\|1688590_1690399_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NZ_CP047652.1\|WP_160619204.1\|1699770_1700322_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619200.1\|1692448_1692661_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619205.1\|1700524_1700908_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619197.1\|1686266_1687592_+\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
NZ_CP047652.1\|WP_160619196.1\|1685101_1686037_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366249
NZ_CP047652.1\|WP_160619192.1\|1679425_1680178_-\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239321
NZ_CP047652.1\|WP_160619195.1\|1684162_1684882_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|237133
NZ_CP047652.1\|WP_160619202.1\|1696801_1697362_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047652.1\|WP_160619206.1\|1701017_1701392_+\|hypothetical-protein	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.85035e-10
NZ_CP047652.1\|WP_160619498.1\|1680516_1681920_+\|gamma-glutamyltranspeptidase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	1.25005e-42
NZ_CP047652.1\|WP_160619203.1\|1699057_1699429_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379262	pfam13560, HTH_31, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	2.33224e-07
NZ_CP047652.1\|WP_160619193.1\|1681987_1683028_+\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_CP047652.1\|WP_160619198.1\|1687585_1688584_+\|class-II-fructose-bisphosphatase	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	5.37358e-180
NZ_CP047652.1\|WP_160619208.1\|1702202_1702658_+\|glycoside-hydrolase-family-protein	gnl\|CDD\|381599	cd00737, lyz_endolysin_autolysin, endolysin and autolysin. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	1.2715e-59
NZ_CP047652.1\|WP_160619194.1\|1683117_1684143_-\|ferritin-like-domain-containing-protein	gnl\|CDD\|177127	MTH00054, ND1, NADH dehydrogenase subunit 1; Provisional.	0.00397812
NZ_CP047652.1\|WP_160619497.1\|1678597_1679362_-\|dihydropteroate-synthase	gnl\|CDD\|238380	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.	1.61467e-95
NZ_CP047652.1\|WP_160619199.1\|1688590_1690399_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	7.46093e-167
NZ_CP047652.1\|WP_160619197.1\|1686266_1687592_+\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0
NZ_CP047652.1\|WP_160619196.1\|1685101_1686037_+\|hypothetical-protein	gnl\|CDD\|366249	pfam00691, OmpA, OmpA family. The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.	0.00428824
NZ_CP047652.1\|WP_160619192.1\|1679425_1680178_-\|thioredoxin-domain-containing-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	1.5526e-49
NZ_CP047652.1\|WP_160619195.1\|1684162_1684882_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|237133	PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed.	2.59019e-103

>NZ_CP047652.1|WP_160619199.1|1688590_1690399_+|single-stranded-DNA-specific-exonuclease-RecJ
MTFNNHVPNNSVLGVTSSAGNRQWVWRKSTLSDEQQRLILTITQQTGLTELTARILAGRGIGLNQLEAFLEPRLERDLPDPSCLKDMDQTSQRLADAIEKQEVIGILGDYDVDGACGTALLASTLSALGCKILTHIPDRITEGYGPNTQTLESFITQGATLLICVDCGTAAHTILDAFEGRADRIILDHHKPNGGLIPKGLVVNPNRLDCDSNLGFICATAVSFFTMIALRRELRSRGWLETHKFPNLLSLLDLTALATICDVMPLYGVNRTLVTQGLKVLNTGKRLGLQMLAHSAGVKDKSNAMACGFALGPRINAGGRIAQSDLGLKLLLSQSEEEARALAETLDGVNRKRQTIEGHALQSAIDRAQAQIDAGHAVILLCDKEWHPGIVGIVAGRLKERFNRPTLIGALNEDNIIKGSARSVTGLDIGNAIIASQQAGLLLAGGGHSMAAGFSLKESNLEAFHQFLNQTLSQALTLPPQEALQIDGILTLNGATPTLAKELSALAPFGNGNEEPILALSHVRCVKTDRIGKDGNTLRVILQGEDGFTRLKGLVFRAAEKRFTNLLEDRTKPLIHVAGQLRLEEWQGIENLTFFISDATPS
>NZ_CP047652.1|WP_160619198.1|1687585_1688584_+|class-II-fructose-bisphosphatase
MLMAKPFRLTGRNLGLELVRVTEAAAIASDHWTGYGNKIEADGAAVKAMREAFDNVAINGTVAIGEGEMDQAPMLYIGEKVGCGGPEFDIAVDPLEGTNLCARSLPNALTVIALAEKGQFLHAPDVYMEKIAVGPDVPENVVDIDASITTNLRELAKAKGKSPSDLTLCALERDRHEEMIAKARETGARVRLLSDGDVAAVIATCLPLSGVDLYAGSGGAPEGVLAAAAVRCMKGHMQARLLFENDQQLQRAKIMMKDQDPKRRLELCDLANGHVFFCATGVTPGYLLEGVENLDTGYRRTHSVVMRSETGTIRYIRAYHHVATKRLQTNFF
>NZ_CP047652.1|WP_160619197.1|1686266_1687592_+|homoserine-dehydrogenase
MKAAPHFSDKTANSNSLRLAIAGLGTVGCGVIKLLQEQASSLTDRTGKQLVVTAVSARDRTKDRQIDLSSFRWYDNPVELASDETIDCVLELIGGAEGPARDLVEASLKAGKAVITANKALIALHGKELAQLSKTHNAPLYYEASVAGAIPAVKIVREGLAGDIIKTIGGILNGTCNYILTTMEETGQSFEAVLKEAQEKGFAEAEPSTDIDGWDTAHKLAILANIAFKPLQFDSLTVEGIRSITASDLGFARKLGYKVKLLGMARQHQDGSIEAWVRPCLVPEKAKLAQVDNVFNALTWEGNYSGPMTISGRGAGEGPTASAVLADIIDYAQGMRLPLWGRIVEQEETAARSVASLKSAFYVRLLVDDTPGVMADISAVLRDQGISVHLIAQHEFKLEQVYLTVITHPVANSHITDAAARLRELNSVHGAPLIVTIESLC
>NZ_CP047652.1|WP_160619196.1|1685101_1686037_+|hypothetical-protein
MMTYFFAKYSRPFAGLFCAFASALTLSGCQHRTANETLTDWVHGISGGEIYKLRPPPPYYDKPFPHIGQVPTYEPEFPSPEARAILTQNLQEHRNYAQRLSAASGPIVKGAIAPPPPPGGGENSSTLTSSRSTGQGSISKAAPYIPKKTATDKNNDNGLPELKYKPIAHETPKSLPTIGDAPPLPIGFRGFKIPSTPGAIIPDFDKKEPNGTLIRFVAATDQIGPKQEQTLQHLADESLHKKFIIIGFGTTLSAEAGLKAKDQQHELRLGLLRAQKIAQELEKRGVASENLIIEARSIGDGARIQIQSLTP
>NZ_CP047652.1|WP_160619195.1|1684162_1684882_-|ATP-dependent-Clp-protease-proteolytic-subunit
MMMNDTQYRDLKGLDRKSQEQCYTEPSSQRFPSRFDEEKPETPSEDKEASKPSPEMEDRLFKQRKVLIFGGVNDRLAKEVTARLLALAGDSDKPIDIYVNSPGGHVESGDTIHDMIRFVDSLAPITIIGTGWVASAGALIFAAGRPERRLCLPNTRFLLHQPMGGVRGPATDIDIEAREIIKMRERLNRIFARETGQTYEKVARDTDRNYWMSAQEAVDYGLVGRIINSPADIETPSAP
>NZ_CP047652.1|WP_160619194.1|1683117_1684143_-|ferritin-like-domain-containing-protein
MSDVKKNTDKKTLADIYSHLPDQPSEKTLAEVDYQARHWSSPVKGPLKPGTQEHKKAMADMFRETFNPYKPSVIPWPELDPETLHRITSLPIWDIAVQTEGKARLRMAAYADMLDDPDVKDAISRNAWEENRHKEVLSRLVEFYKIPMAPEPPYKEPRDTEWAYLVTGFSECWDSFFAFGLFALAERAGLFPMELIETFEPVMQEECRHILLFANWLAYHRAVMPFWKRPWFEMRVIGVLFFLLYERMSLVRSFDDQGIEHTQDNNFTVTGAQSMTDQNVDFVELMELCLREDERRFSGYDPRLVRPKMAPMAARAAIKAVKFWRKLRGKNQEENAEAVSA
>NZ_CP047652.1|WP_160619193.1|1681987_1683028_+|recombinase-RecA
MDKNKALEGALSQIERAFGKGSVMRLGQRPIEQAEVISTGSLGLDIGLGIGGLPRGRIVEIYGPESSGKTTLALHVLAEAQKKGGTVAFIDAEHALDPIYARKLGVNIDELLLSQPDTGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVSRSNTMVIFLNQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDKDEVTGNQTRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELLDLGVKANIVEKAGAWFSFDSTRIGQGRENSKQYLRDHPEMAQIIEQRIRADAGIVAQSLLVGETEDSESLPLGE
>NZ_CP047652.1|WP_160619498.1|1680516_1681920_+|gamma-glutamyltranspeptidase
MLLALASFSAILLSGCSDVHVPGFIAAHTPPGGGGIVVADEPQAALVGRDVLARGGNAADAATATAFALGVTLPSRASLGGGGACLISEPGQAEAKAITFLAPAGQGEGERPASVPLMARGLYLLQLRYGSVHFEDVIDPAIHLARQGISVSKALAADLDAVKGPLLDDRGALSVFGKEGNLIVGVGDQLVQTRLSSFLSRLKLAGVGDLYSGALSEVFVNQAQQSGAALTRDDLRKALPGESAALVVEQGNYRASFLPPPADGGLGSAMAFSHGISAEGAVQAWRQSGLAGTKAAQTFLNKSQSSAQPLPSLPASTSFIVKDHYGLAVACTLSDNNLFGTGRIAGSTGVILGASPQNYPKPLLSAAIIQSKGKQPVNAVLSASGQNAAAQIVADALTKIMHDQPLSTVTSGSNEGRLNAIICKKGQCSGTADPRGSGLSTSTKAPHKGLLKNRFQTPYQNSFPHPV
>NZ_CP047652.1|WP_160619192.1|1679425_1680178_-|thioredoxin-domain-containing-protein
MKRQILLTVLAAFWTASLGGSAHAAQTESRHFTPQERKEIVQIVSQALKKDPQILSDAIQSLRQQATEEMQERGLKAVKAHYSALEAAPPYAVKGNPQGKVTVIEFLDPRCGYCRHMMPVLDKFLKRHPDVKLIEKLVPVLGPASLLDVQAIFAAAMQNHYEQMRLALMKETAKSDQGKIETLAKEQGLDLEKFRKDMKGPAVKALIAINVGQAQAIGLDGTPTFIFGQAAVIPGAISLDQLDQILEKVR
>NZ_CP047652.1|WP_160619497.1|1678597_1679362_-|dihydropteroate-synthase
MGILNITPDSFSDGGEFIEADEACRQAHKLVLEGADIIDCGGESTRPGYTAISVEEEWYRLSSVIAPLAVQGICLSVDTMKAEVARRALRAGAVMVNDVWGLQYDPAMAAVVADFGANVVVMHNRQDIDPHLDLKADFKRFFDYSLEKAQLAGVSTKQIVLDPGVGFGKTPEQNLKAINLISWLRSYYQLPILLGVSRKSFFGHFLGRQKGERLAATIAANLYGVKEGASIIRVHDAQPHEDMVLLNYMLGNLS
>NZ_CP047652.1|WP_160619200.1|1692448_1692661_+|hypothetical-protein
MFPARAGINLLSGVYSTTRHSVLRTRGDERTTTPNKTAAHLYFPARAGKDHMQWDAAAARKEVRSVRARE
>NZ_CP047652.1|WP_160619201.1|1695747_1696551_-|hypothetical-protein
MGEAKIKQMSKRKFLAKPENKFCVYCGAPATTIDHFPPRNFFYKRQAPEGYTYPSCNFCNSGKSSDEQALSLIVMMSSWEVDKDESRFDKLVRAVQNNRPEIIAEMTPLSNEQSKLHLRQVVGSQDDVLKNKTAGWQIVDYGPEAIRLMNKMCVWFGQTLYFKHNKELFTGEIFVLTLPEYVKCCKKFQELKSEFDGAPNITHTSHDISKQFSYQYFAAKGIFCAILHFEAPQIFFLICALSQQTMNPNINVLDGWYRSGLVGPKIK
>NZ_CP047652.1|WP_160619202.1|1696801_1697362_-|hypothetical-protein
MTVYALTLLRSYALTLLRSYALTLSLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLFLRSYALTLLRSYALTLLRSYALTLLRSYALTLLAKLQHLN
>NZ_CP047652.1|WP_160619203.1|1699057_1699429_-|helix-turn-helix-domain-containing-protein
MKKETLGQRLRRLRHQAGLQQSEAVAALSVEIQSSQLSKIETDKSLPSWPVMCALSDLYGVAIDYIRFGDEISLVETPSQLVKNSTEFALLRAWRAMDEEEKRALALFLDKFGPLASEKDRVA
>NZ_CP047652.1|WP_160619204.1|1699770_1700322_+|hypothetical-protein
MNNPSQKECHERFHTHAIELGALVTYCETGYNLQFIKPDDYNTLSKILEDHKKQFYKDILALTSQFFHSNENLSSYLTENRRSILTQELKNFLKQQIYFLKLSDITPEQLENWLKKLSPHSAKIKQPITKPNAVTIEKQKTAPPIDLSKEDTQTLHILITCVKCPQIRQAAQHEIEKRAGFCK
>NZ_CP047652.1|WP_160619205.1|1700524_1700908_+|hypothetical-protein
MLIPRIIDASCAKSNIVAKRKRVQTKWTSDKISLLRSLYNENYSYKEMAFELSVSRFMVDSAIRRYIKGQSRPIYTPQIDVKLRKIPKGLKLTRDELVSANSPDPLPKGHPLAKPTGWKNTLRFSEQ
>NZ_CP047652.1|WP_160619206.1|1701017_1701392_+|hypothetical-protein
MTSKTILSCGKLHLDTETRLVSGPRGEIRLENLLFKLLKRLMRRPEAIIQTNDLIAALWPNPDEEPDTAYATLKTSITILRNTFISLGCNGRHKVMIINERGVGYYISAWKDDYNIKPYQLDQN
>NZ_CP047652.1|WP_160619207.1|1701948_1702206_+|hypothetical-protein
MTDPNLIITNGGFKNALVKLSYEQAEHDQRLSRLENQISEGFSSINDSLRTIQTIKNWTTGAAAGVGTAIVYALLSLFQGGGHLL
>NZ_CP047652.1|WP_160619208.1|1702202_1702658_+|glycoside-hydrolase-family-protein
MKKAITLATELIKQFEGCSLIPYLCPAGFWTIGYGSTVSANGKPVTDLTKPITWSEANSLLLSTIQDVQKQLARVVTIFVTPQQEAALISLIYNIGIGNFRRSTLLKLLNTGQMKQAAEQFLRWNKSQGQTLSGLTQRRKAERAVFLGETP
>NZ_CP047652.1|WP_160619209.1|1702654_1702963_+|hypothetical-protein
MKILFNLRHWLQQPSTLYGLSAFIGGIIGLWFKAITPDVAYTMMAASLPMLLPDNTSAQRIGQAALLPLISALSHHKGSGTNLNAPDKIGHINSKNYFRNPY

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047652_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047652_3

1692327-1692664

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCGTGCGGGGATGAACC	PILER-CR
GTGTTCCCCGCGCGTGCGGGGATGAACC	CRISPRCasFinder
GTGTTCCCCGCGCGTGCGGGGATGAACCT	CRT

5 spacers

The CRISPR arrays of NZ_CP047652_3

>merge|NZ_CP047652|3|1692327-1692664|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCGTGCGGGGATGAACCTACGACCCTACAACTCATGCACTGTCTGTAACAGTGTGCCCCGCGCGTGCGGGGATGAACCGGATAAGGGGCGGGGCGGATAGGCCGCCCCTCCGTGTTCCCCGCGCGTGCGGGGATAAACCTCCTCAGCGGCGTTTACAGCACTACTCGCCATAGTGTTCTCCGCACACGCGGGGATGAACGTACAACAACACCTAACAAGACCGCGGCACATTTGTATTTCCCCGCACGTGCTGGGAAGGACCATATGCAATGGGATGCAGCAGCGGCACGGAAAGAAGTACGTTCCGTGCGTGCACGGGAATGAATC

>NZ_CP047652|3|3|1692327-1692476|PILER-CR
GTGTTCCCCGCGCGTGCGGGGATGAACC	TACGACCCTACAACTCATGCACTGTCTGTAACA
GTGTGCCCCGCGCGTGCGGGGATGAACC	GGATAAGGGGCGGGGCGGATAGGCCGCCCCTCC
GTGTTCCCCGCGCGTGCGGGGATAAACC

>NZ_CP047652|3|3|1692327-1692664|CRISPRCasFinder
GTGTTCCCCGCGCGTGCGGGGATGAACC	TACGACCCTACAACTCATGCACTGTCTGTAACA
GTGTGCCCCGCGCGTGCGGGGATGAACC	GGATAAGGGGCGGGGCGGATAGGCCGCCCCTCC
GTGTTCCCCGCGCGTGCGGGGATAAACC	TCCTCAGCGGCGTTTACAGCACTACTCGCCATA
GTGTTCTCCGCACACGCGGGGATGAACG	TACAACAACACCTAACAAGACCGCGGCACATTTG
TATTTCCCCGCACGTGCTGGGAAGGACC	ATATGCAATGGGATGCAGCAGCGGCACGGAAAGAAGT
ACGTTCCGTGCGTGCACGGGAATGAATC

>NZ_CP047652|3|3|1692327-1692538|CRT
GTGTTCCCCGCGCGTGCGGGGATGAACCT	ACGACCCTACAACTCATGCACTGTCTGTAACA
GTGTGCCCCGCGCGTGCGGGGATGAACCG	GATAAGGGGCGGGGCGGATAGGCCGCCCCTCC
GTGTTCCCCGCGCGTGCGGGGATAAACCT	CCTCAGCGGCGTTTACAGCACTACTCGCCATA
GTGTTCTCCGCACACGCGGGGATGAACGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047652.1\|WP_160619201.1\|1695747_1696551_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619498.1\|1680516_1681920_+\|gamma-glutamyltranspeptidase	unknown	unknown	gnl\|CDD\|223482
NZ_CP047652.1\|WP_160619207.1\|1701948_1702206_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619209.1\|1702654_1702963_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619206.1\|1701017_1701392_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223816
NZ_CP047652.1\|WP_160619203.1\|1699057_1699429_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379262
NZ_CP047652.1\|WP_160619193.1\|1681987_1683028_+\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_CP047652.1\|WP_160619198.1\|1687585_1688584_+\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236536
NZ_CP047652.1\|WP_160619208.1\|1702202_1702658_+\|glycoside-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|381599
NZ_CP047652.1\|WP_160619210.1\|1703024_1703354_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619194.1\|1683117_1684143_-\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|177127
NZ_CP047652.1\|WP_160619497.1\|1678597_1679362_-\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|238380
NZ_CP047652.1\|WP_160619199.1\|1688590_1690399_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NZ_CP047652.1\|WP_160619204.1\|1699770_1700322_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619205.1\|1700524_1700908_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619197.1\|1686266_1687592_+\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
NZ_CP047652.1\|WP_160619196.1\|1685101_1686037_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366249
NZ_CP047652.1\|WP_160619192.1\|1679425_1680178_-\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239321
NZ_CP047652.1\|WP_160619195.1\|1684162_1684882_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|237133
NZ_CP047652.1\|WP_160619202.1\|1696801_1697362_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047652.1\|WP_160619206.1\|1701017_1701392_+\|hypothetical-protein	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.85035e-10
NZ_CP047652.1\|WP_160619498.1\|1680516_1681920_+\|gamma-glutamyltranspeptidase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	1.25005e-42
NZ_CP047652.1\|WP_160619203.1\|1699057_1699429_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379262	pfam13560, HTH_31, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	2.33224e-07
NZ_CP047652.1\|WP_160619193.1\|1681987_1683028_+\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_CP047652.1\|WP_160619198.1\|1687585_1688584_+\|class-II-fructose-bisphosphatase	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	5.37358e-180
NZ_CP047652.1\|WP_160619208.1\|1702202_1702658_+\|glycoside-hydrolase-family-protein	gnl\|CDD\|381599	cd00737, lyz_endolysin_autolysin, endolysin and autolysin. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	1.2715e-59
NZ_CP047652.1\|WP_160619194.1\|1683117_1684143_-\|ferritin-like-domain-containing-protein	gnl\|CDD\|177127	MTH00054, ND1, NADH dehydrogenase subunit 1; Provisional.	0.00397812
NZ_CP047652.1\|WP_160619497.1\|1678597_1679362_-\|dihydropteroate-synthase	gnl\|CDD\|238380	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.	1.61467e-95
NZ_CP047652.1\|WP_160619199.1\|1688590_1690399_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	7.46093e-167
NZ_CP047652.1\|WP_160619197.1\|1686266_1687592_+\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0
NZ_CP047652.1\|WP_160619196.1\|1685101_1686037_+\|hypothetical-protein	gnl\|CDD\|366249	pfam00691, OmpA, OmpA family. The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.	0.00428824
NZ_CP047652.1\|WP_160619192.1\|1679425_1680178_-\|thioredoxin-domain-containing-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	1.5526e-49
NZ_CP047652.1\|WP_160619195.1\|1684162_1684882_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|237133	PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed.	2.59019e-103

>NZ_CP047652.1|WP_160619199.1|1688590_1690399_+|single-stranded-DNA-specific-exonuclease-RecJ
MTFNNHVPNNSVLGVTSSAGNRQWVWRKSTLSDEQQRLILTITQQTGLTELTARILAGRGIGLNQLEAFLEPRLERDLPDPSCLKDMDQTSQRLADAIEKQEVIGILGDYDVDGACGTALLASTLSALGCKILTHIPDRITEGYGPNTQTLESFITQGATLLICVDCGTAAHTILDAFEGRADRIILDHHKPNGGLIPKGLVVNPNRLDCDSNLGFICATAVSFFTMIALRRELRSRGWLETHKFPNLLSLLDLTALATICDVMPLYGVNRTLVTQGLKVLNTGKRLGLQMLAHSAGVKDKSNAMACGFALGPRINAGGRIAQSDLGLKLLLSQSEEEARALAETLDGVNRKRQTIEGHALQSAIDRAQAQIDAGHAVILLCDKEWHPGIVGIVAGRLKERFNRPTLIGALNEDNIIKGSARSVTGLDIGNAIIASQQAGLLLAGGGHSMAAGFSLKESNLEAFHQFLNQTLSQALTLPPQEALQIDGILTLNGATPTLAKELSALAPFGNGNEEPILALSHVRCVKTDRIGKDGNTLRVILQGEDGFTRLKGLVFRAAEKRFTNLLEDRTKPLIHVAGQLRLEEWQGIENLTFFISDATPS
>NZ_CP047652.1|WP_160619198.1|1687585_1688584_+|class-II-fructose-bisphosphatase
MLMAKPFRLTGRNLGLELVRVTEAAAIASDHWTGYGNKIEADGAAVKAMREAFDNVAINGTVAIGEGEMDQAPMLYIGEKVGCGGPEFDIAVDPLEGTNLCARSLPNALTVIALAEKGQFLHAPDVYMEKIAVGPDVPENVVDIDASITTNLRELAKAKGKSPSDLTLCALERDRHEEMIAKARETGARVRLLSDGDVAAVIATCLPLSGVDLYAGSGGAPEGVLAAAAVRCMKGHMQARLLFENDQQLQRAKIMMKDQDPKRRLELCDLANGHVFFCATGVTPGYLLEGVENLDTGYRRTHSVVMRSETGTIRYIRAYHHVATKRLQTNFF
>NZ_CP047652.1|WP_160619197.1|1686266_1687592_+|homoserine-dehydrogenase
MKAAPHFSDKTANSNSLRLAIAGLGTVGCGVIKLLQEQASSLTDRTGKQLVVTAVSARDRTKDRQIDLSSFRWYDNPVELASDETIDCVLELIGGAEGPARDLVEASLKAGKAVITANKALIALHGKELAQLSKTHNAPLYYEASVAGAIPAVKIVREGLAGDIIKTIGGILNGTCNYILTTMEETGQSFEAVLKEAQEKGFAEAEPSTDIDGWDTAHKLAILANIAFKPLQFDSLTVEGIRSITASDLGFARKLGYKVKLLGMARQHQDGSIEAWVRPCLVPEKAKLAQVDNVFNALTWEGNYSGPMTISGRGAGEGPTASAVLADIIDYAQGMRLPLWGRIVEQEETAARSVASLKSAFYVRLLVDDTPGVMADISAVLRDQGISVHLIAQHEFKLEQVYLTVITHPVANSHITDAAARLRELNSVHGAPLIVTIESLC
>NZ_CP047652.1|WP_160619196.1|1685101_1686037_+|hypothetical-protein
MMTYFFAKYSRPFAGLFCAFASALTLSGCQHRTANETLTDWVHGISGGEIYKLRPPPPYYDKPFPHIGQVPTYEPEFPSPEARAILTQNLQEHRNYAQRLSAASGPIVKGAIAPPPPPGGGENSSTLTSSRSTGQGSISKAAPYIPKKTATDKNNDNGLPELKYKPIAHETPKSLPTIGDAPPLPIGFRGFKIPSTPGAIIPDFDKKEPNGTLIRFVAATDQIGPKQEQTLQHLADESLHKKFIIIGFGTTLSAEAGLKAKDQQHELRLGLLRAQKIAQELEKRGVASENLIIEARSIGDGARIQIQSLTP
>NZ_CP047652.1|WP_160619195.1|1684162_1684882_-|ATP-dependent-Clp-protease-proteolytic-subunit
MMMNDTQYRDLKGLDRKSQEQCYTEPSSQRFPSRFDEEKPETPSEDKEASKPSPEMEDRLFKQRKVLIFGGVNDRLAKEVTARLLALAGDSDKPIDIYVNSPGGHVESGDTIHDMIRFVDSLAPITIIGTGWVASAGALIFAAGRPERRLCLPNTRFLLHQPMGGVRGPATDIDIEAREIIKMRERLNRIFARETGQTYEKVARDTDRNYWMSAQEAVDYGLVGRIINSPADIETPSAP
>NZ_CP047652.1|WP_160619194.1|1683117_1684143_-|ferritin-like-domain-containing-protein
MSDVKKNTDKKTLADIYSHLPDQPSEKTLAEVDYQARHWSSPVKGPLKPGTQEHKKAMADMFRETFNPYKPSVIPWPELDPETLHRITSLPIWDIAVQTEGKARLRMAAYADMLDDPDVKDAISRNAWEENRHKEVLSRLVEFYKIPMAPEPPYKEPRDTEWAYLVTGFSECWDSFFAFGLFALAERAGLFPMELIETFEPVMQEECRHILLFANWLAYHRAVMPFWKRPWFEMRVIGVLFFLLYERMSLVRSFDDQGIEHTQDNNFTVTGAQSMTDQNVDFVELMELCLREDERRFSGYDPRLVRPKMAPMAARAAIKAVKFWRKLRGKNQEENAEAVSA
>NZ_CP047652.1|WP_160619193.1|1681987_1683028_+|recombinase-RecA
MDKNKALEGALSQIERAFGKGSVMRLGQRPIEQAEVISTGSLGLDIGLGIGGLPRGRIVEIYGPESSGKTTLALHVLAEAQKKGGTVAFIDAEHALDPIYARKLGVNIDELLLSQPDTGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVSRSNTMVIFLNQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDKDEVTGNQTRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELLDLGVKANIVEKAGAWFSFDSTRIGQGRENSKQYLRDHPEMAQIIEQRIRADAGIVAQSLLVGETEDSESLPLGE
>NZ_CP047652.1|WP_160619498.1|1680516_1681920_+|gamma-glutamyltranspeptidase
MLLALASFSAILLSGCSDVHVPGFIAAHTPPGGGGIVVADEPQAALVGRDVLARGGNAADAATATAFALGVTLPSRASLGGGGACLISEPGQAEAKAITFLAPAGQGEGERPASVPLMARGLYLLQLRYGSVHFEDVIDPAIHLARQGISVSKALAADLDAVKGPLLDDRGALSVFGKEGNLIVGVGDQLVQTRLSSFLSRLKLAGVGDLYSGALSEVFVNQAQQSGAALTRDDLRKALPGESAALVVEQGNYRASFLPPPADGGLGSAMAFSHGISAEGAVQAWRQSGLAGTKAAQTFLNKSQSSAQPLPSLPASTSFIVKDHYGLAVACTLSDNNLFGTGRIAGSTGVILGASPQNYPKPLLSAAIIQSKGKQPVNAVLSASGQNAAAQIVADALTKIMHDQPLSTVTSGSNEGRLNAIICKKGQCSGTADPRGSGLSTSTKAPHKGLLKNRFQTPYQNSFPHPV
>NZ_CP047652.1|WP_160619192.1|1679425_1680178_-|thioredoxin-domain-containing-protein
MKRQILLTVLAAFWTASLGGSAHAAQTESRHFTPQERKEIVQIVSQALKKDPQILSDAIQSLRQQATEEMQERGLKAVKAHYSALEAAPPYAVKGNPQGKVTVIEFLDPRCGYCRHMMPVLDKFLKRHPDVKLIEKLVPVLGPASLLDVQAIFAAAMQNHYEQMRLALMKETAKSDQGKIETLAKEQGLDLEKFRKDMKGPAVKALIAINVGQAQAIGLDGTPTFIFGQAAVIPGAISLDQLDQILEKVR
>NZ_CP047652.1|WP_160619497.1|1678597_1679362_-|dihydropteroate-synthase
MGILNITPDSFSDGGEFIEADEACRQAHKLVLEGADIIDCGGESTRPGYTAISVEEEWYRLSSVIAPLAVQGICLSVDTMKAEVARRALRAGAVMVNDVWGLQYDPAMAAVVADFGANVVVMHNRQDIDPHLDLKADFKRFFDYSLEKAQLAGVSTKQIVLDPGVGFGKTPEQNLKAINLISWLRSYYQLPILLGVSRKSFFGHFLGRQKGERLAATIAANLYGVKEGASIIRVHDAQPHEDMVLLNYMLGNLS
>NZ_CP047652.1|WP_160619201.1|1695747_1696551_-|hypothetical-protein
MGEAKIKQMSKRKFLAKPENKFCVYCGAPATTIDHFPPRNFFYKRQAPEGYTYPSCNFCNSGKSSDEQALSLIVMMSSWEVDKDESRFDKLVRAVQNNRPEIIAEMTPLSNEQSKLHLRQVVGSQDDVLKNKTAGWQIVDYGPEAIRLMNKMCVWFGQTLYFKHNKELFTGEIFVLTLPEYVKCCKKFQELKSEFDGAPNITHTSHDISKQFSYQYFAAKGIFCAILHFEAPQIFFLICALSQQTMNPNINVLDGWYRSGLVGPKIK
>NZ_CP047652.1|WP_160619202.1|1696801_1697362_-|hypothetical-protein
MTVYALTLLRSYALTLLRSYALTLSLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLLRSYALTLFLRSYALTLLRSYALTLLRSYALTLLRSYALTLLAKLQHLN
>NZ_CP047652.1|WP_160619203.1|1699057_1699429_-|helix-turn-helix-domain-containing-protein
MKKETLGQRLRRLRHQAGLQQSEAVAALSVEIQSSQLSKIETDKSLPSWPVMCALSDLYGVAIDYIRFGDEISLVETPSQLVKNSTEFALLRAWRAMDEEEKRALALFLDKFGPLASEKDRVA
>NZ_CP047652.1|WP_160619204.1|1699770_1700322_+|hypothetical-protein
MNNPSQKECHERFHTHAIELGALVTYCETGYNLQFIKPDDYNTLSKILEDHKKQFYKDILALTSQFFHSNENLSSYLTENRRSILTQELKNFLKQQIYFLKLSDITPEQLENWLKKLSPHSAKIKQPITKPNAVTIEKQKTAPPIDLSKEDTQTLHILITCVKCPQIRQAAQHEIEKRAGFCK
>NZ_CP047652.1|WP_160619205.1|1700524_1700908_+|hypothetical-protein
MLIPRIIDASCAKSNIVAKRKRVQTKWTSDKISLLRSLYNENYSYKEMAFELSVSRFMVDSAIRRYIKGQSRPIYTPQIDVKLRKIPKGLKLTRDELVSANSPDPLPKGHPLAKPTGWKNTLRFSEQ
>NZ_CP047652.1|WP_160619206.1|1701017_1701392_+|hypothetical-protein
MTSKTILSCGKLHLDTETRLVSGPRGEIRLENLLFKLLKRLMRRPEAIIQTNDLIAALWPNPDEEPDTAYATLKTSITILRNTFISLGCNGRHKVMIINERGVGYYISAWKDDYNIKPYQLDQN
>NZ_CP047652.1|WP_160619207.1|1701948_1702206_+|hypothetical-protein
MTDPNLIITNGGFKNALVKLSYEQAEHDQRLSRLENQISEGFSSINDSLRTIQTIKNWTTGAAAGVGTAIVYALLSLFQGGGHLL
>NZ_CP047652.1|WP_160619208.1|1702202_1702658_+|glycoside-hydrolase-family-protein
MKKAITLATELIKQFEGCSLIPYLCPAGFWTIGYGSTVSANGKPVTDLTKPITWSEANSLLLSTIQDVQKQLARVVTIFVTPQQEAALISLIYNIGIGNFRRSTLLKLLNTGQMKQAAEQFLRWNKSQGQTLSGLTQRRKAERAVFLGETP
>NZ_CP047652.1|WP_160619209.1|1702654_1702963_+|hypothetical-protein
MKILFNLRHWLQQPSTLYGLSAFIGGIIGLWFKAITPDVAYTMMAASLPMLLPDNTSAQRIGQAALLPLISALSHHKGSGTNLNAPDKIGHINSKNYFRNPY
>NZ_CP047652.1|WP_160619210.1|1703024_1703354_+|hypothetical-protein
MTEAQTTSSIFNHAITDLASSAEAAIKAITGLSLSSNQQKVIDGVLKIADGLLPAIEGITPFDLEKVIKGSTEILNGVADVTTGVKTKSSLIPNLPHIPNLIKAASPSE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047652_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047652_4

1718896-1719113

Orphan

I-E

Consensus_repeat	Method
ATAGGCACGAGCCTGTTCCCCGCACGCGCGGGGATGAACCTG	PILER-CR
GCCTGTTCCCCGCACGCGCGGGGATGAACC	CRT

3 spacers

The CRISPR arrays of NZ_CP047652_4

>merge|NZ_CP047652|4|1718896-1719113|PILER-CR,CRT
ACAAGCCTGTTCCCCGCACGCGCGGGGATGAACCTGGACGCCTTCACAGCCGATAAATGGGCGCGTGACTGTTCCCCGCACGCGCGGGGATGAACCTCCGCTAGAATCAGACAGCTTATAGGCACGCTCCTGTTCCCCGCACGCGCGGGGATGAACCGGCCTCTTGCAGCTCATGCCAGGCACTGCACGCCTGTTCCCCGCGCGTGCGGGGATGAACC

>NZ_CP047652|4|4|1718896-1719054|PILER-CR
ACAAGCCTGTTCCCCGCACGCGCGGGGATGAACCTGGACGCC	TTCACAGCCGATAAATGGGC
GCGTGACTGTTCCCCGCACGCGCGGGGATGAACCTCCGCTAG	AATCAGACAGCTTATAGGC
ACGCTCCTGTTCCCCGCACGCGCGGGGATGAACCGG

>NZ_CP047652|4|4|1718900-1719113|CRT
GCCTGTTCCCCGCACGCGCGGGGATGAACC	TGGACGCCTTCACAGCCGATAAATGGGCGCGT
GACTGTTCCCCGCACGCGCGGGGATGAACC	TCCGCTAGAATCAGACAGCTTATAGGCACGC
TCCTGTTCCCCGCACGCGCGGGGATGAACC	GGCCTCTTGCAGCTCATGCCAGGCACTGCAC
GCCTGTTCCCCGCGCGTGCGGGGATGAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047652.1\|WP_160619209.1\|1702654_1702963_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619502.1\|1723312_1724680_-\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NZ_CP047652.1\|WP_160619211.1\|1703346_1703580_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619220.1\|1720814_1721276_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379129
NZ_CP047652.1\|WP_160619219.1\|1719789_1720674_-\|class-A-beta-lactamase	unknown	unknown	gnl\|CDD\|185339
NZ_CP047652.1\|WP_160619213.1\|1705058_1706162_-\|type-II-asparaginase	unknown	unknown	gnl\|CDD\|199208
NZ_CP047652.1\|WP_160619223.1\|1728799_1729504_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380375
NZ_CP047652.1\|WP_160619217.1\|1711201_1711360_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619212.1\|1703579_1703801_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619501.1\|1722439_1723147_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133062
NZ_CP047652.1\|WP_160619500.1\|1719414_1719588_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372646
NZ_CP047652.1\|WP_160619210.1\|1703024_1703354_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619499.1\|1704043_1704976_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619216.1\|1709901_1710231_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619222.1\|1725147_1726605_-\|mannitol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223324
NZ_CP047652.1\|WP_160619224.1\|1729569_1730238_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227105
NZ_CP047652.1\|WP_160619221.1\|1722282_1722465_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047652.1\|WP_160619503.1\|1726950_1727646_+\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NZ_CP047652.1\|WP_160619215.1\|1707938_1709630_-\|aspartate-alanine-antiporter	unknown	unknown	gnl\|CDD\|274793
NZ_CP047652.1\|WP_160619214.1\|1706320_1707910_-\|bifunctional-aspartate-transaminase/aspartate-4-decarboxylase	unknown	unknown	gnl\|CDD\|236444

Protein	Function_ID	Function_description	E-value
NZ_CP047652.1\|WP_160619219.1\|1719789_1720674_-\|class-A-beta-lactamase	gnl\|CDD\|185339	PRK15442, PRK15442, beta-lactamase TEM; Provisional.	5.04151e-53
NZ_CP047652.1\|WP_160619220.1\|1720814_1721276_+\|hypothetical-protein	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	1.71123e-09
NZ_CP047652.1\|WP_160619213.1\|1705058_1706162_-\|type-II-asparaginase	gnl\|CDD\|199208	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase. Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type II L-asparaginases, which tend to be highly specific for asparagine and localized to the periplasm. They are potent antileukemic agents and have been used in the treatment of acute lymphoblastic leukemia (ALL), but not without severe side effects. Tumor cells appear to have a heightened dependence on exogenous L-aspartate, and depleting their surroundings of L-aspartate may starve cancerous ALL cells. Type II L-asparaginase acts as a tetramer, which is actually a dimer of two tightly bound dimers. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase.	1.78279e-140
NZ_CP047652.1\|WP_160619223.1\|1728799_1729504_+\|hypothetical-protein	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	1.47817e-66
NZ_CP047652.1\|WP_160619502.1\|1723312_1724680_-\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.59344e-99
NZ_CP047652.1\|WP_160619215.1\|1707938_1709630_-\|aspartate-alanine-antiporter	gnl\|CDD\|274793	TIGR03802, Asp_Ala_antiprt, aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).	0
NZ_CP047652.1\|WP_160619503.1\|1726950_1727646_+\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	6.98518e-34
NZ_CP047652.1\|WP_160619500.1\|1719414_1719588_+\|hypothetical-protein	gnl\|CDD\|372646	pfam13610, DDE_Tnp_IS240, DDE domain. This DDE domain is found in a wide variety of transposases including those found in IS240, IS26, IS6100 and IS26.	1.55293e-05
NZ_CP047652.1\|WP_160619222.1\|1725147_1726605_-\|mannitol-dehydrogenase-family-protein	gnl\|CDD\|223324	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism].	3.89184e-136
NZ_CP047652.1\|WP_160619224.1\|1729569_1730238_-\|hypothetical-protein	gnl\|CDD\|227105	COG4764, COG4764, Uncharacterized protein conserved in bacteria [Function unknown].	1.51654e-65
NZ_CP047652.1\|WP_160619501.1\|1722439_1723147_-\|glycosyltransferase	gnl\|CDD\|133062	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily.	2.14283e-83
NZ_CP047652.1\|WP_160619214.1\|1706320_1707910_-\|bifunctional-aspartate-transaminase/aspartate-4-decarboxylase	gnl\|CDD\|236444	PRK09275, PRK09275, bifunctional aspartate transaminase/aspartate 4-decarboxylase.	0

>NZ_CP047652.1|WP_160619217.1|1711201_1711360_-|hypothetical-protein
MIVRATLCSRMRKKHRVKQPWVDSVTIHLRIGWEMRDRLGDVSLPCMRGIVV
>NZ_CP047652.1|WP_160619216.1|1709901_1710231_+|hypothetical-protein
MRKTLLTIISMMSLSITVPALAQNSASWPPEAGAKTPYNALSVPTDLKPVGQSLKQLLNQGFKITTSNYFQNGEIFTLKHKKSVVLCVLTAPGANTDQNVPTSRCWTLN
>NZ_CP047652.1|WP_160619215.1|1707938_1709630_-|aspartate-alanine-antiporter
MHNVVNFFSHIFNAAPEIALFLSLVIGYGLGRLRFGSFQLGGVAGSLLAAVVISQVGVHIDSGIKNVLFALFIYAVGYQSGPQFFRSLGRESLKEIMLAVVLAVTGLITVVTVSRLFHLDKGLAAGLAAGGLTQSAIIGTAGSALGKLGLPLSEVQQLQGNVAIGYAVTYIFGSIGTIIICVNILPWFMKRSIRDDAIQAETSQAGGVRLLKQNESFAVPDLMGRAFIINKKGLTVSQLEQTIQNVTVEQVLRDKKPFKLSGDLALLPGDQVLLLGHRDNIVKYGSQIGTETDDISGLDVVITRENVVLTNKDFVGKTLDQCKDILSPEARHGVYLIDITRDGRKIAVKADSVAKEGDIITLYGNASDISRLTAQIGTALVTTVKTDIVFHALGLAVGLFIGLGVVHFGSVPLTLGSGGGALLAGLVFGWYQNRHPLIGNMSRETSTFLMDFGLAGFVAVTGLQTGQQAISTIMQHGVTLFMLGVVVTIVPLIITMLFGLYVLRYRNVAIFAGALSGSRSANPALGEILNKAGNAVPTAPFAITYALANVLLTLLGPLVVAFS
>NZ_CP047652.1|WP_160619214.1|1706320_1707910_-|bifunctional-aspartate-transaminase/aspartate-4-decarboxylase
MATDYSKFSNMSPFELKDELIRLASSKSERTMLNAGRGNPNFLATLPRAAFFLFGQFALAESRLSLSYLSPWLGGTVRVAGIEGRFDSFMSTHQGLEEARFLSGALSYVRDQMGLPADEFLLEMVEGILGCYYPAPPRMLSLSEKIVGQYVLREMVGGHVPLEDTDFFATEGGTAAMAYVFHSMKQNGLIKKGDKVALGMPIFSPYIEIPELEEYGLEVVEIQADINLNWQYPESELDKLRDPEVKIFFCVNPSNPASVKMDDRSLEKIADIVKERPELVILTDDVYGTFADDFRSIYAICPHNTILVYSFSKYFGSTGWRLGVIGMHKDNVLDKAIANFPQEVKDTLEKRYITLTPDVSDLKFIDRLVADSRAVALNHTAGLSTPQQVQMVMFSLFALMDQEGRYKTVLKSLVRRRQEALYRELAATEGHDANAVDYYTLIDLENVSRRLYGDKFAAWMLEKASAGELLFRIADETGIVLLPASGFGAKRPAGRVSLANLNEVQYIAIGRSLRKMAEEYYVLFQKEQS
>NZ_CP047652.1|WP_160619213.1|1705058_1706162_-|type-II-asparaginase
MAQLYRRRCSSWVYALVGAIIFAVSSSFALAQTGKAPMHSSLPRVLVLATGGTISGKASERSAISYDAGAVTGEDLIAGVPGIEKLARLKAEQISNIPSQNMNSKVWFRLAERINQVFAHDEADAVVITHGTDTMEETAFFLDKVIKTSHPVILTGAMRPSTAISADGPANMYEAVKVAVDPAAQGRGVMIVLNDTIHAARWVTKTSTTSLETFKSQIAGPIGAVDAASVRFFGPPVSFNHIALPTEQNLPQVRIIYAHADMDAQQIDEAVKAGAAGLVIAGMGDGNVSQEALSGLDRAVKAGVIIVRSARVGEGFVNRNVEVNDDEHGLVVSYDLNPQKARILLQLLLANHVRDKSKIQQDFLARY
>NZ_CP047652.1|WP_160619499.1|1704043_1704976_-|hypothetical-protein
MATSALFCTFNITDAKAGQWYTGSLVSPSGTTGEGVLNVEPYYSYSQPMGAFGPHGGTGPAKHPLQRSLSNSTLWKYGITPDLSIQFHTMVNYRWKHAAGHAHGPKAADMPLGLIYRFVRPDPERYIPALSIIASMAFPTGDYSNLGHEQDGVGTGTYIFRLGFVSQSTYTLPGQHELRVRVWNWFRRSVSSARLKNMTSYGTDYGFYGRGHPGMSGQTGISLEYGLNQKWVLATDLAHDWANGSHIKGYDSRGHYVNKISSASSDWQIAPAIEYNWNPRWGIIVGSAFYFAGHNSNIQVTPQFAVNSMF
>NZ_CP047652.1|WP_160619212.1|1703579_1703801_+|hypothetical-protein
MKTYVIMLLLLVMGACSAPHLQTICPILVDYSPTDQQALAKELLQLPDHSHIVRWLGDYIGLRDQVKSCQTKS
>NZ_CP047652.1|WP_160619211.1|1703346_1703580_+|hypothetical-protein
MNNWLGLKALTIIVGALISLVIYANRAGRNAARVKFEKENAQLAQQVTRVVRAMAQAEINKPITAKELIDRLNNGKI
>NZ_CP047652.1|WP_160619210.1|1703024_1703354_+|hypothetical-protein
MTEAQTTSSIFNHAITDLASSAEAAIKAITGLSLSSNQQKVIDGVLKIADGLLPAIEGITPFDLEKVIKGSTEILNGVADVTTGVKTKSSLIPNLPHIPNLIKAASPSE
>NZ_CP047652.1|WP_160619209.1|1702654_1702963_+|hypothetical-protein
MKILFNLRHWLQQPSTLYGLSAFIGGIIGLWFKAITPDVAYTMMAASLPMLLPDNTSAQRIGQAALLPLISALSHHKGSGTNLNAPDKIGHINSKNYFRNPY
>NZ_CP047652.1|WP_160619500.1|1719414_1719588_+|hypothetical-protein
MIKPVRGFKSLKTVYATIKSLEVMHALKKGQARLFQFQNGIRKGVRLVKGQFGIYSS
>NZ_CP047652.1|WP_160619219.1|1719789_1720674_-|class-A-beta-lactamase
MSLDSRIVQVSRRSFMAGISLFPVFRRAMAHSLEPDFAAIERRSGGKIGVSVLDTETGKTLQWRANDRFPFCSSAKVPLVAYVLWKADRGEISLDQIVHYTEADLLPYAPVTRVAVSKGFLSIAELCQAAVTLSDNTAANLLWRETGGYKALNAWMQSEGDHEFNLSGIEPELNWAQYGDRHNTTTPVAMAKTYERFVLGDTLKSASRDKLTNWLLSNKTGERRIRAGLPHAWRVGDKTGTFNENYFSTVDIGVVWPIARRPMVIACFVAGTPDTDSAEYAIAEAAQAIASWMS
>NZ_CP047652.1|WP_160619220.1|1720814_1721276_+|hypothetical-protein
MAVFCLVVQSLLRKIPDRKSQLSQAQALLKSEVIREIGFMEAKFKRKPRMSELFLLSESKMERIRPYFPLAHDIPRINDRRVLSGYFYVIRNGPQWKDALREYSPYKTLYIAGAISVSLKDIFTALVEQAGPSAQLMIDAPAPNGNTSTLPTE
>NZ_CP047652.1|WP_160619221.1|1722282_1722465_+|hypothetical-protein
MKNRMLLPVRFFFNYSQSVTRLFKRLYRFIALSLYRFIALSLYRFIALSLYRFIALSLLL
>NZ_CP047652.1|WP_160619501.1|1722439_1723147_-|glycosyltransferase
MAVTEVSIIVPCLNEADNIFPFVEAIKNIFCDVKWEIIFVDDNSSDGTIHNIRQISQEDPRVRGILRLNRKGLSSAVIEGALSVSSPYIAVMDGDLQHDEACLPSMLNLLRAHKADLVVASRYIDGGGNEGLSSAWRRGLSKTGIKLAIKLSHAPITDPMSGFFMIKQEIFDEIVPSLSGKGFKILLDLILSSKNPLSIAEVPMIFRKRIYGESKLGIPVLLSFAMMLTKAAIKR
>NZ_CP047652.1|WP_160619502.1|1723312_1724680_-|sugar-porter-family-MFS-transporter
MNTSALTIVIALVAATGGLLFGYDTGIISAALMQLMENFHLSTFNAEIVTSAIIVGALVGAISAGPISDAIGRRPSVLIAAVLFIIGTAAIIFANSMTSLVICRLILGLAIGAATQIVPIYIAEIAPPERRGSLVVAFQLAVGVGQLGSFILGFMIRNHSWRLMFGIGLVPALVLFIGMLCLPNSPRWMALKGRVMEARQVLVRLRSTKKEAEGELKEILAYGQGHEVDGKKGYAELFSRWVRPALIVGVGVALFCQITGINAVIYYAPTIFADVGFSQSSALLSVIPVGIAMVASIAFGGWAVDAWGRRKTMLYLLPGAIIGLLITGTMFHLGLANHGMGAWVTVFSVMAYTFFNVGSLSVGIWLIGAEVFPLSCRSQGMSLVSATHWSIDLLVSLTTLSMVKLLGAGGVFWLFAAMNFLAFCFVFYFVPETRGVSLEEIERRLRTGTFLSFKK
>NZ_CP047652.1|WP_160619222.1|1725147_1726605_-|mannitol-dehydrogenase-family-protein
MLTIPLLKSLPNTVTVPSYNLKDVKISIVHFGVGNFFRAHLAYYMDKILALPECQEWGIIGVGLRRGKGPEKKAKDFKAQQGLYSLTETAPNGESKRRIIGSLRGYLLAPLEQEKVLSYLSSAQTKIISLTITEGGYNIDEKTGEFILDDPDVKHDLANPTKPKTVFGYVVEGLRRRKEAGLKGFTILSCDNLRQNGSVSRTAFIGYAKALDPDLAAWIEENVSFPNAMVDRITPSISKSAAAVLNKKSGVQDLEPIVAEDFTQWVLEDKFIAGRPPLEKVGAEFSDEVGTYEHAKIRILNASHIVFASIGWLLGLKHIDEVLAISKVREFVDNVIENDVLPTLKGPKGVDLQAYKQLIFDRFSNPAMADQIRRIAGDLTSKTQVFWTETMRQALEGKRDQHRLIFIMALFLELLRNNNKEGEPISEPALSKEQLEIAHSDDLKASIELPIFDGWRDLMTPQLSEDIAKARKQIRDNNILEVLPH
>NZ_CP047652.1|WP_160619503.1|1726950_1727646_+|DUF421-domain-containing-protein
MWIITMMFYLWMLIKLITGFAFIIGYLNISGRTQLSQMNSIDLIGNFILGGMIGGVIYTASIPFMEYVYSLLIGVLVLFGLNFLYRKFSGFRNITIGRPIPIISNKKFLLDNINDKNNKIDILNVASQLNLKGIMSFNDVYFAQIEPNGQVTAFTEKTKRPAAIVCYNGDIREADLENYHKTKEDFLNDMKKQGIEKVEDIFIAELQFGRFSYVCRNGKHIPSLSSGLEEV
>NZ_CP047652.1|WP_160619223.1|1728799_1729504_+|hypothetical-protein
MIEIRPFAKLGHANHGWLNATHHFSFADYFDRNRMNWGRLRVWNDDQIAAQAGFPSHPHSNMEIITYVRKGAIFHRDSLGNEGKTDAGDVQVMSAGTGIVHSEYNPDNEEGLIFQIWITPDRNGHKPSWGNRPFPKNDRQGRFVPLASGFEEDHPEALNINTSGRVSGATLSKGQKIEHSLLNGCFAYLVPSTGKITINGVSANARDGIAIKDETSLVITAEEDAELVLVETLD
>NZ_CP047652.1|WP_160619224.1|1729569_1730238_-|hypothetical-protein
MFYRLFCHLKKLAADRVLLGQVGGLLLLLGSLTACATSPPAHPGNLCDIYREKRGWYHAAMRQERKWNIPSSVPMAMMYQESGFRSNVHTRRRYILWVIPWGYITTAYGYPQAKDEVWSDYEKKTGRSGRRDNYADALDFMNWYITNTKKINGVPVRNATNQYLAYHEGWGGYKRRSYASKGWLVKVARKVGSRASTYQRQFNGCKQSLKGGFWENLLNFLF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047652_2	2.5\|1691570\|32\|NZ_CP047652\|CRISPRCasFinder,CRT	1691570-1691601	32	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	1055929-1055960	8	0.75
NZ_CP047652_4	4.5\|1719053\|31\|NZ_CP047652\|CRT	1719053-1719083	31	NZ_CP011275	Planctomyces sp. SH-PL62 plasmid pPL62-2, complete sequence	80289-80319	8	0.742
NZ_CP047652_1	1.4\|941633\|33\|NZ_CP047652\|CRISPRCasFinder,CRT	941633-941665	33	NZ_CP043609	Bacteroides fragilis strain GUT04 plasmid unnamed1, complete sequence	32279-32311	9	0.727
NZ_CP047652_2	2.4\|1691697\|33\|NZ_CP047652\|PILER-CR	1691697-1691729	33	NC_048827	Vibrio phage vB_VchM_Kuja, complete genome	104426-104458	10	0.697
NZ_CP047652_2	2.5\|1691570\|32\|NZ_CP047652\|CRISPRCasFinder,CRT	1691570-1691601	32	AP013377	Uncultured Mediterranean phage uvMED DNA, complete genome, group G13, isolate: uvMED-CGR-U-MedDCM-OCT-S36-C15	696-727	10	0.688
NZ_CP047652_2	2.7\|1691691\|33\|NZ_CP047652\|CRISPRCasFinder,CRT	1691691-1691723	33	NC_048827	Vibrio phage vB_VchM_Kuja, complete genome	104426-104458	10	0.697
NZ_CP047652_2	2.9\|1691813\|33\|NZ_CP047652\|CRISPRCasFinder,CRT	1691813-1691845	33	NZ_CP021432	Yoonia vestfoldensis strain SMR4r plasmid pSMR4r-1, complete sequence	72375-72407	10	0.697
NZ_CP047652_3	3.4\|1692538\|34\|NZ_CP047652\|CRISPRCasFinder	1692538-1692571	34	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1114310-1114343	10	0.706

1. spacer 2.5|1691570|32|NZ_CP047652|CRISPRCasFinder,CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gatcgtt--atcatcctaaaaccttgtttttcta	CRISPR spacer
--ccattcagacatccaaaagccttgtttttcta	Protospacer
  .*.**  . ***** ***.*************

2. spacer 4.5|1719053|31|NZ_CP047652|CRT matches to NZ_CP011275 (Planctomyces sp. SH-PL62 plasmid pPL62-2, complete sequence) position: , mismatch: 8, identity: 0.742

ggcctcttgcagctcatgccaggcactgcac	CRISPR spacer
tctccttcgcagctcctgcgaggcactgcac	Protospacer
  .*..*.******* *** ***********

3. spacer 1.4|941633|33|NZ_CP047652|CRISPRCasFinder,CRT matches to NZ_CP043609 (Bacteroides fragilis strain GUT04 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

tttaatccgtttttctcccggtaatcctcaaaa	CRISPR spacer
agtaatccgtttttctccagataatcgagcaca	Protospacer
  **************** *.*****    * *

4. spacer 2.4|1691697|33|NZ_CP047652|PILER-CR matches to NC_048827 (Vibrio phage vB_VchM_Kuja, complete genome) position: , mismatch: 10, identity: 0.697

attttctgttttttcgacagtttcccgcgccgg	CRISPR spacer
attttctgttttttcaacagcttctttaatcac	Protospacer
***************.****.***..  ..*.

5. spacer 2.5|1691570|32|NZ_CP047652|CRISPRCasFinder,CRT matches to AP013377 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G13, isolate: uvMED-CGR-U-MedDCM-OCT-S36-C15) position: , mismatch: 10, identity: 0.688

gatcgttatcatcctaaaaccttgtttttcta	CRISPR spacer
tctggttatcatcccataaccttgtttcctgc	Protospacer
  * **********.* **********...

6. spacer 2.7|1691691|33|NZ_CP047652|CRISPRCasFinder,CRT matches to NC_048827 (Vibrio phage vB_VchM_Kuja, complete genome) position: , mismatch: 10, identity: 0.697

attttctgttttttcgacagtttcccgcgccgg	CRISPR spacer
attttctgttttttcaacagcttctttaatcac	Protospacer
***************.****.***..  ..*.

7. spacer 2.9|1691813|33|NZ_CP047652|CRISPRCasFinder,CRT matches to NZ_CP021432 (Yoonia vestfoldensis strain SMR4r plasmid pSMR4r-1, complete sequence) position: , mismatch: 10, identity: 0.697

tgtcctgttctgttttaatctgggcgtgagatg	CRISPR spacer
gcgagagggctgttttaagctgggcgttagatg	Protospacer
      *  ********* ******** *****

8. spacer 3.4|1692538|34|NZ_CP047652|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 10, identity: 0.706

tacaacaacacctaacaagaccgcggcacatttg	CRISPR spacer
ccgtccggcacctcataagaccgcggcacatttc	Protospacer
.    *..***** *.*****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1146425 : 1153304

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007283570.1\|1146425_1146629_+	30S ribosomal protein S21	M1HLV7	Pelagibacter_phage	3.7e-05	47.6
WP_160618797.1\|1146709_1148107_-	hypothetical protein	NA	NA	NA	NA
WP_160618798.1\|1148748_1149732_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	2.5e-62	42.6
WP_160618799.1\|1149885_1150779_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	1.1e-13	23.5
WP_160618800.1\|1150898_1151192_-	DUF4496 domain-containing protein	A7KV42	Bacillus_phage	4.7e-09	37.8
WP_160618801.1\|1151461_1151911_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	1.6e-19	41.7
WP_160619454.1\|1152047_1153304_+	UdgX family uracil-DNA binding protein	A0A127AW33	Bacillus_phage	1.3e-10	30.1

DBSCAN-SWA_2

1669055 : 1677703

Mesorhizobium_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160619494.1\|1669055_1670594_-	catalase	A0A2K9L0T1	Tupanvirus	5.2e-99	39.3
WP_160619186.1\|1671283_1671934_+	S-adenosylmethionine-binding protein	A0A076YNT4	Mesorhizobium_phage	7.1e-82	67.3
WP_160619187.1\|1671933_1672701_+	restriction endonuclease	A0A076YJ23	Mesorhizobium_phage	3.4e-30	34.2
WP_160619495.1\|1672773_1673415_+	7-carboxy-7-deazaguanine synthase	A0A2I7S8X1	Vibrio_phage	3.6e-09	27.5
WP_160619188.1\|1673411_1674134_+	7-cyano-7-deazaguanine synthase QueC	A0A1B0Z0B4	Vibrio_phage	1.6e-50	43.6
WP_160619189.1\|1674106_1674688_+	6-carboxytetrahydropterin synthase	A0A2R4AN60	Mycobacterium_phage	1.4e-07	33.6
WP_160619190.1\|1676043_1676400_-	hypothetical protein	NA	NA	NA	NA
WP_160619496.1\|1677070_1677703_-	GTP cyclohydrolase I FolE	A0A1W7AF02	Streptococcus_virus	6.2e-38	49.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047652

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection