CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP047681	Serratia marcescens strain 4201 plasmid pXQ, complete sequence	0 crisprs	NA	0
NZ_CP047679	Serratia marcescens strain 4201 chromosome, complete genome	0 crisprs	WYL,RT,DEDDh,DinG,csa3,cas3	6
NZ_CP047680	Serratia marcescens strain 4201 plasmid p4201-KPC, complete sequence	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

810132 : 888821

Salmonella_phage(23.53%)

tRNA,integrase,plate,tail

attL 817501:817526|attR 838292:838317

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033641888.1\|810132_811179_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_101453529.1\|811156_811921_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	7.4e-54	46.3
WP_004932585.1\|811914_812541_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.3e-34	49.4
WP_123061395.1\|812848_813865_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	3.1e-07	37.5
WP_019455119.1\|813919_814918_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.2e-32	37.6
WP_160203971.1\|814997_817559_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.1e-27	20.0
817501:817526	attL	NA	NA	NA	NA
WP_160203972.1\|817717_819178_+\|integrase	tyrosine-type recombinase/integrase	A0A0R6PGY7	Moraxella_phage	1.1e-21	26.6
WP_160203973.1\|819174_820437_+	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_160203974.1\|820433_822452_+	RNA-directed DNA polymerase	A0A0H4TEY7	Erysipelothrix_phage	1.8e-30	26.5
WP_160203975.1\|822717_823317_+	hypothetical protein	NA	NA	NA	NA
WP_160203976.1\|823331_824297_+	hypothetical protein	NA	NA	NA	NA
WP_160203977.1\|824410_824848_+	hypothetical protein	NA	NA	NA	NA
WP_032417543.1\|824874_825093_-	hypothetical protein	NA	NA	NA	NA
WP_064189535.1\|825291_825846_-	hypothetical protein	NA	NA	NA	NA
WP_160203978.1\|826278_827478_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_102011737.1\|827461_828976_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_160203979.1\|828963_830961_+	hypothetical protein	NA	NA	NA	NA
WP_105577148.1\|830941_831361_+	hypothetical protein	NA	NA	NA	NA
WP_102011740.1\|831582_831996_+	hypothetical protein	NA	NA	NA	NA
WP_160203980.1\|832383_832674_-	hypothetical protein	NA	NA	NA	NA
WP_112001669.1\|832685_833276_-	DUF4755 domain-containing protein	NA	NA	NA	NA
WP_160203981.1\|833484_834657_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_160203982.1\|834662_835028_-	hypothetical protein	NA	NA	NA	NA
WP_160203983.1\|835603_837799_+	AAA family ATPase	NA	NA	NA	NA
WP_047572624.1\|838902_839520_-	cell division protein Fic	NA	NA	NA	NA
838292:838317	attR	NA	NA	NA	NA
WP_033644195.1\|839714_840599_-	hypothetical protein	NA	NA	NA	NA
WP_122004202.1\|840737_841709_-	aldo/keto reductase	NA	NA	NA	NA
WP_101453863.1\|841721_842480_-	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	7.2e-17	29.9
WP_042783708.1\|842628_843522_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004932561.1\|843939_844257_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_033641899.1\|844269_845631_+	PTS N,N'-diacetylchitobiose transporter subunit IIC	NA	NA	NA	NA
WP_101453528.1\|845674_847060_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA
WP_004932550.1\|847075_847924_+	transcriptional regulator ChbR	NA	NA	NA	NA
WP_160203984.1\|848072_848834_+	chitin disaccharide deacetylase	NA	NA	NA	NA
WP_033641904.1\|848843_850223_-	MFS transporter	NA	NA	NA	NA
WP_033641905.1\|850466_850955_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.0e-24	46.1
WP_004932541.1\|851066_852131_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.7e-112	61.9
WP_160203985.1\|852191_852707_+	recombination regulator RecX	NA	NA	NA	NA
WP_033641907.1\|852840_855468_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.2e-80	37.7
WP_004091602.1\|855720_855906_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_033641908.1\|857260_857827_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_004932520.1\|857823_858252_+	DedA family protein	NA	NA	NA	NA
WP_033641909.1\|858334_859897_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_033641910.1\|860063_860579_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_016929024.1\|860644_861934_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_004932506.1\|861976_862768_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_004932504.1\|862937_864299_+	signal recognition particle protein	NA	NA	NA	NA
WP_004932501.1\|864513_864762_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_019455135.1\|864780_865329_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_046688258.1\|865381_866149_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_015376707.1\|866197_866554_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_160203986.1\|866697_866925_-	transcriptional regulator	Q37973	Salmonella_virus	4.6e-20	65.7
WP_069101122.1\|867014_868109_-	phage late control D family protein	Q6K1G4	Salmonella_virus	2.5e-103	49.7
WP_033641914.1\|868105_868579_-\|tail	phage tail protein	Q6K1G5	Salmonella_virus	8.1e-43	57.2
WP_033641915.1\|868601_870695_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	2.4e-14	45.5
WP_033641916.1\|870687_870810_-\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	2.8e-08	74.3
WP_033641917.1\|870842_871130_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	3.0e-24	58.9
WP_033641919.1\|871194_871704_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.6e-65	69.0
WP_033641920.1\|871716_872886_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	5.8e-183	79.9
WP_050594401.1\|873026_873584_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	1.7e-28	39.6
WP_033641921.1\|873583_875461_-\|tail	tail fiber protein	A0A0M3ULH6	Salmonella_phage	1.0e-59	53.2
WP_122016508.1\|875457_878751_-\|tail	phage tail protein I	G5DEL7	Salmonella_phage	1.5e-273	48.8
WP_033641923.1\|878743_879652_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	1.5e-122	76.5
WP_033641924.1\|879656_880007_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	4.4e-38	67.2
WP_033641925.1\|880003_880639_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	3.2e-58	55.0
WP_033641926.1\|880724_881189_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	1.7e-37	52.6
WP_046688264.1\|881242_881755_-	lysozyme	A0A218M4K3	Erwinia_phage	1.1e-58	64.1
WP_033641928.1\|881738_881957_-	hypothetical protein	B6SD15	Bacteriophage	8.1e-06	50.9
WP_033641929.1\|881960_882164_-\|tail	tail protein X	F1BUQ5	Erwinia_phage	1.8e-20	68.7
WP_033641930.1\|882355_882550_-	hypothetical protein	NA	NA	NA	NA
WP_080273365.1\|882613_884710_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	5.9e-194	48.4
WP_033641931.1\|884693_884915_-	hypothetical protein	A0A0M4S5Q7	Salmonella_phage	6.9e-13	56.5
WP_033641932.1\|884993_885299_-	hypothetical protein	NA	NA	NA	NA
WP_160203987.1\|885541_886438_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	5.8e-82	53.1
WP_033641933.1\|886484_887249_-	DUF481 domain-containing protein	NA	NA	NA	NA
WP_016929016.1\|887744_888821_+	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	9.0e-90	50.9

DBSCAN-SWA_2

2193790 : 2220829

Moraxella_phage(50.0%)

protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046686934.1\|2193790_2195209_+\|protease	serralysin family metalloprotease	NA	NA	NA	NA
WP_033642834.1\|2195355_2195565_-	hypothetical protein	NA	NA	NA	NA
WP_033638276.1\|2196344_2196737_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_160204205.1\|2196741_2197341_+	hypothetical protein	NA	NA	NA	NA
WP_033642836.1\|2197396_2197636_-	YebV family protein	NA	NA	NA	NA
WP_033644260.1\|2197771_2198704_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_160204712.1\|2198723_2201066_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_046686936.1\|2201217_2201985_-	molecular chaperone	NA	NA	NA	NA
WP_033642838.1\|2202005_2202548_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_033642839.1\|2202541_2203045_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_046686938.1\|2203047_2203584_-	fimbrial major subunit CsuA/B family protein	NA	NA	NA	NA
WP_033642841.1\|2203856_2204393_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_139120317.1\|2204658_2206095_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_033644262.1\|2206197_2208828_-	PqiB family protein	NA	NA	NA	NA
WP_033644263.1\|2208796_2210044_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_046686940.1\|2210299_2210797_+	GAF domain-containing protein	NA	NA	NA	NA
WP_004931497.1\|2210893_2211604_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_033642845.1\|2211623_2213672_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.5e-85	33.9
WP_160204206.1\|2213738_2214584_-	DMT family transporter	NA	NA	NA	NA
WP_042784329.1\|2214580_2215888_-	opine metallophore biosynthesis dehydrogenase	NA	NA	NA	NA
WP_033642848.1\|2215880_2216678_-	nicotianamine synthase	NA	NA	NA	NA
WP_047026224.1\|2216665_2217451_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	8.8e-10	28.4
WP_052133798.1\|2217447_2218488_-	iron ABC transporter permease	NA	NA	NA	NA
WP_042784331.1\|2218490_2219582_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_033652481.1\|2219950_2220829_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_3

2234575 : 2303973

Cronobacter_phage(31.25%)

protease,terminase,head,tRNA,integrase,lysis,coat

attL 2252856:2252872|attR 2296939:2296955

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033652468.1\|2234575_2235856_-\|protease	protease	NA	NA	NA	NA
WP_025302601.1\|2236041_2236602_+	membrane protein	NA	NA	NA	NA
WP_033642864.1\|2236637_2237507_-	fructosamine kinase family protein	NA	NA	NA	NA
WP_033652467.1\|2237747_2238602_-	metal ABC transporter permease	NA	NA	NA	NA
WP_016927980.1\|2238601_2239462_-	iron/manganese ABC transporter permease subunit YfeC	NA	NA	NA	NA
WP_033642866.1\|2239461_2240352_-	manganese/iron ABC transporter ATP-binding protein	A0A1V0SKJ1	Klosneuvirus	4.2e-08	28.1
WP_033642867.1\|2240348_2241293_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_033642868.1\|2241424_2241724_-	type V toxin-antitoxin system endoribonuclease antitoxin GhoS	NA	NA	NA	NA
WP_004931439.1\|2241833_2242499_+	transglycosylase SLT domain-containing protein	I6ZXX9	Escherichia_phage	1.0e-06	46.3
WP_160204210.1\|2242803_2243529_+	gluconate 2-dehydrogenase subunit 3 family protein	NA	NA	NA	NA
WP_004931432.1\|2243531_2245313_+	GMC family oxidoreductase	NA	NA	NA	NA
WP_129993130.1\|2245325_2246663_+	cytochrome c	NA	NA	NA	NA
WP_102948152.1\|2246920_2248204_+	HAAAP family serine/threonine permease	NA	NA	NA	NA
WP_160204211.1\|2248354_2249488_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_046686950.1\|2249525_2250212_-	MarC family NAAT transporter	NA	NA	NA	NA
WP_047576023.1\|2250319_2250547_-	hypothetical protein	NA	NA	NA	NA
WP_033642876.1\|2250770_2251820_+	YrzE family protein	NA	NA	NA	NA
WP_160204212.1\|2252059_2252683_+	hypothetical protein	NA	NA	NA	NA
2252856:2252872	attL	NA	NA	NA	NA
WP_160204213.1\|2253032_2254235_+\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	3.8e-137	60.4
WP_071532844.1\|2254198_2254447_-	hypothetical protein	A0A1P8DTG1	Proteus_phage	1.6e-13	53.0
WP_160204214.1\|2254629_2255277_-	DNA methyltransferase	G8C7S6	Escherichia_phage	1.9e-90	76.4
WP_160204215.1\|2255273_2255462_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_160204216.1\|2255476_2255857_-	hypothetical protein	NA	NA	NA	NA
WP_160204713.1\|2255859_2256048_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	5.3e-06	48.2
WP_142590549.1\|2256161_2256947_-	hypothetical protein	C7BGF1	Burkholderia_phage	9.3e-60	51.4
WP_160204217.1\|2257786_2257984_-	hypothetical protein	NA	NA	NA	NA
WP_160204218.1\|2258001_2258202_-	hypothetical protein	NA	NA	NA	NA
WP_160204714.1\|2258943_2259537_-	LexA family transcriptional regulator	Q76H56	Enterobacteria_phage	1.8e-15	61.0
WP_041033757.1\|2259647_2259860_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-23	75.4
WP_041033759.1\|2259885_2260176_+	hypothetical protein	I6PCV6	Cronobacter_phage	7.2e-10	44.0
WP_160204219.1\|2260184_2260334_+	hypothetical protein	NA	NA	NA	NA
WP_089192596.1\|2260514_2261159_+	phage regulatory protein/antirepressor Ant	A0A2I7RHG4	Vibrio_phage	4.3e-47	48.8
WP_160204220.1\|2261161_2261338_+	DUF4222 domain-containing protein	A0A1W6JP38	Morganella_phage	1.4e-08	51.0
WP_160204221.1\|2262595_2263570_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.3e-68	40.9
WP_160204222.1\|2263566_2263923_+	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	4.1e-39	66.4
WP_060706489.1\|2263919_2264318_+	antitermination protein Q	S5M7R9	Escherichia_phage	2.2e-33	56.1
WP_033646506.1\|2265596_2265842_+\|lysis	lysis protein	A0A127KNH9	Pseudomonas_phage	1.2e-05	36.2
WP_160204715.1\|2265850_2266327_+	lysozyme	A0A1R3Y5W5	Salmonella_virus	2.4e-50	61.6
WP_160204223.1\|2266326_2266695_+	hypothetical protein	NA	NA	NA	NA
WP_160204224.1\|2266855_2267410_-	hypothetical protein	S4TR57	Salmonella_phage	1.3e-10	30.9
WP_033646503.1\|2267509_2267764_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.0e-24	65.5
WP_160204225.1\|2267814_2268060_+	DUF2560 family protein	NA	NA	NA	NA
WP_160204226.1\|2268809_2269253_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	7.1e-49	72.4
WP_160204227.1\|2269256_2270747_+\|terminase	terminase	A0A1W6JNY3	Morganella_phage	6.0e-241	80.7
WP_160204228.1\|2270757_2272185_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	1.3e-168	65.0
WP_160204716.1\|2272252_2273134_+\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	3.2e-109	66.3
WP_160204229.1\|2273167_2273803_+	hypothetical protein	NA	NA	NA	NA
WP_160204230.1\|2273854_2275243_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	1.1e-148	58.5
WP_160204231.1\|2275246_2275684_+	hypothetical protein	F1C5E0	Cronobacter_phage	2.2e-42	64.1
WP_046688419.1\|2275694_2276771_+\|coat	phage coat protein	F1C5E1	Cronobacter_phage	1.0e-154	75.4
WP_160204232.1\|2276780_2277182_+	hypothetical protein	NA	NA	NA	NA
WP_160204717.1\|2277181_2277562_+	hypothetical protein	F1C5E2	Cronobacter_phage	1.6e-49	77.0
WP_160204233.1\|2277656_2278004_+	hypothetical protein	G0ZNE2	Cronobacter_phage	2.9e-29	59.5
WP_060431663.1\|2278005_2278374_+	hypothetical protein	F1C5E3	Cronobacter_phage	1.2e-46	75.4
WP_160204234.1\|2278370_2278754_+	hypothetical protein	G0ZNE4	Cronobacter_phage	8.6e-43	63.0
WP_160204235.1\|2278778_2279537_+	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	6.6e-79	79.1
WP_160204236.1\|2279588_2280263_+	hypothetical protein	G0ZNE7	Cronobacter_phage	7.4e-66	56.2
WP_160204237.1\|2280409_2280952_+	hypothetical protein	NA	NA	NA	NA
WP_060660822.1\|2281064_2281265_+	lipoprotein	NA	NA	NA	NA
WP_160204238.1\|2281339_2281813_-	hypothetical protein	A0A077K9U2	Edwardsiella_phage	1.9e-23	42.7
WP_160204239.1\|2281855_2282206_-	hypothetical protein	NA	NA	NA	NA
WP_160204240.1\|2282356_2282638_+	hypothetical protein	A0A1V0E5N1	Salmonella_phage	1.2e-17	47.8
WP_160204241.1\|2282700_2285829_+	tape measure protein	Q5G8W8	Enterobacteria_phage	1.9e-188	50.7
WP_046688430.1\|2285866_2286334_+	hypothetical protein	A0A173GC35	Salmonella_phage	3.2e-52	64.1
WP_160204242.1\|2286334_2286805_+	DUF1833 domain-containing protein	R9TPR6	Aeromonas_phage	1.4e-47	57.5
WP_160204718.1\|2286824_2287217_+	C40 family peptidase	F1C5F2	Cronobacter_phage	2.1e-44	63.9
WP_160204243.1\|2287176_2289669_+	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	3.1e-258	54.9
WP_160204244.1\|2289669_2291586_+	sialate O-acetylesterase	A0A286S1P0	Klebsiella_phage	3.2e-162	47.8
WP_160204245.1\|2291585_2292344_+	hypothetical protein	A0A286S1R5	Klebsiella_phage	1.2e-48	46.2
WP_033637997.1\|2292491_2292914_+	translesion error-prone DNA polymerase V autoproteolytic subunit	F1C5A6	Cronobacter_phage	3.0e-33	55.0
WP_160204246.1\|2292913_2294182_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	2.0e-176	71.3
WP_160204719.1\|2294423_2295722_-	hypothetical protein	NA	NA	NA	NA
WP_160204247.1\|2296009_2296717_-	hypothetical protein	A0A2H4J5W2	uncultured_Caudovirales_phage	7.1e-67	53.7
WP_025159696.1\|2296984_2298913_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.5e-132	37.7
2296939:2296955	attR	NA	NA	NA	NA
WP_048233542.1\|2298916_2299468_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.6e-16	33.7
WP_004931418.1\|2299566_2299764_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_004931417.1\|2299807_2300164_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_147880682.1\|2300230_2300326_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_043143373.1\|2300587_2301571_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	2.2e-34	38.9
WP_089196984.1\|2301585_2303973_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	3.1e-05	24.0

DBSCAN-SWA_4

3870631 : 3877725

Salmonella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033644018.1\|3870631_3870985_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.6e-19	47.0
WP_033644019.1\|3871185_3871416_+	hypothetical protein	J9Q735	Salmonella_phage	4.2e-13	50.7
WP_033644020.1\|3871429_3871969_+	DNA-binding protein	J9Q7G7	Salmonella_phage	4.0e-46	56.6
WP_025159568.1\|3871982_3872684_-	DnaA inactivator Hda	NA	NA	NA	NA
WP_016926729.1\|3872956_3873472_+	hypothetical protein	NA	NA	NA	NA
WP_016926728.1\|3873505_3873754_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_033644021.1\|3873801_3875091_-	uracil permease	Q9KX94	Enterobacteria_phage	7.8e-64	38.2
WP_004941642.1\|3875167_3875794_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_025303843.1\|3876049_3877087_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	3.8e-69	41.9
WP_033644022.1\|3877086_3877725_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	3.2e-26	39.2

DBSCAN-SWA_5

4039993 : 4102750

Cronobacter_phage(62.5%)

portal,terminase,head,tail,capsid,tRNA,integrase,holin

attL 4069445:4069460|attR 4109601:4109616

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033644114.1\|4039993_4040500_-\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYT2	Pandoravirus	4.5e-07	32.2
WP_160204498.1\|4040617_4041670_+	DUF2157 domain-containing protein	NA	NA	NA	NA
WP_070914447.1\|4041715_4042372_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_160204499.1\|4042375_4043737_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_033644118.1\|4043755_4044649_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_033644119.1\|4044816_4045665_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_160204500.1\|4045718_4045979_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	2.9e-18	53.5
WP_004929169.1\|4046025_4046406_-	holo-ACP synthase	NA	NA	NA	NA
WP_033651585.1\|4046405_4047137_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_015378804.1\|4047208_4047940_-	DNA repair protein RecO	NA	NA	NA	NA
WP_004929162.1\|4047946_4048855_-	GTPase Era	NA	NA	NA	NA
WP_004929158.1\|4048851_4049532_-	ribonuclease III	A0A2K9L5P0	Tupanvirus	9.6e-21	31.3
WP_033644122.1\|4049766_4050744_-	signal peptidase I	NA	NA	NA	NA
WP_019452315.1\|4050776_4052576_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	2.5e-23	26.4
WP_033644123.1\|4053095_4053932_+	hypothetical protein	NA	NA	NA	NA
WP_033644124.1\|4053928_4054405_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_160204501.1\|4054404_4055361_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_033644125.1\|4055360_4056014_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_004929136.1\|4056044_4056620_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_160204502.1\|4056798_4058436_+	L-aspartate oxidase	NA	NA	NA	NA
WP_033644126.1\|4058474_4059254_-	methyltransferase	NA	NA	NA	NA
WP_016929798.1\|4059353_4060676_+	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	3.6e-40	27.3
WP_160204503.1\|4060728_4061484_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_033644128.1\|4061476_4062436_-	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_004929114.1\|4062620_4063004_-	autonomous glycyl radical cofactor GrcA	C3V1I5	Escherichia_virus	6.1e-33	70.2
WP_004929112.1\|4063350_4064034_+	uracil-DNA glycosylase	A0A076JX67	Equid_alphaherpesvirus	1.1e-53	48.4
WP_089195095.1\|4064090_4064675_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_004929107.1\|4064800_4065679_+	NAD(+) kinase	NA	NA	NA	NA
WP_033644129.1\|4065765_4067427_+	DNA repair protein RecN	NA	NA	NA	NA
WP_004929101.1\|4067667_4068006_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_004929098.1\|4069430_4069715_-	RnfH family protein	NA	NA	NA	NA
4069445:4069460	attL	NA	NA	NA	NA
WP_086016675.1\|4069707_4070196_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_016929804.1\|4070303_4070786_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	3.2e-26	44.9
WP_160204504.1\|4071394_4072210_+	hypothetical protein	NA	NA	NA	NA
WP_160204505.1\|4072860_4074003_-	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_160204506.1\|4074309_4075971_-	hypothetical protein	F1BUJ7	Cronobacter_phage	1.4e-169	54.1
WP_076741080.1\|4075967_4076528_-	hypothetical protein	F1BUJ9	Cronobacter_phage	1.3e-50	58.8
WP_160204507.1\|4076502_4077225_-	hypothetical protein	F1BUK1	Cronobacter_phage	1.1e-38	39.4
WP_123061539.1\|4077214_4077643_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	5.8e-24	47.2
WP_160204508.1\|4077645_4080825_-	hypothetical protein	F1BUK3	Cronobacter_phage	7.0e-106	65.9
WP_160204509.1\|4080830_4081436_-	hypothetical protein	F1BUK5	Cronobacter_phage	4.5e-70	68.2
WP_160204510.1\|4081428_4082613_-	hypothetical protein	F1BUK6	Cronobacter_phage	1.1e-152	67.3
WP_047730045.1\|4082590_4082938_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	5.2e-31	67.7
WP_160204511.1\|4082937_4085469_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	1.2e-137	52.4
WP_123061536.1\|4085656_4085926_-	hypothetical protein	A5X9I7	Aeromonas_virus	1.1e-20	61.0
WP_160204512.1\|4086073_4086418_-	hypothetical protein	F1BUL2	Cronobacter_phage	2.1e-24	57.7
WP_103681986.1\|4086417_4086759_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	1.6e-40	77.2
WP_160204513.1\|4086745_4087048_-\|holin	holin	C7BGD7	Burkholderia_phage	2.4e-16	54.1
WP_047730038.1\|4087057_4087513_-	DUF2597 family protein	F1BUL4	Cronobacter_phage	9.2e-52	64.2
WP_076741074.1\|4087509_4088634_-	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	1.0e-139	65.6
WP_047730036.1\|4088630_4089341_-	hypothetical protein	F1BUL6	Cronobacter_phage	1.6e-82	66.5
WP_103681983.1\|4089337_4089841_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	5.6e-34	44.5
WP_103681982.1\|4089837_4090290_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	1.2e-38	54.0
WP_160204514.1\|4090389_4091094_-\|terminase	terminase	F1BUM0	Cronobacter_phage	8.9e-78	60.9
WP_160204515.1\|4091099_4092116_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	5.3e-140	76.3
WP_160204516.1\|4092164_4093004_-\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	3.8e-59	44.4
WP_160204517.1\|4093169_4094951_+\|terminase	terminase	F1BUM5	Cronobacter_phage	4.8e-245	70.3
WP_160204518.1\|4094947_4095997_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	6.4e-141	69.6
WP_160204519.1\|4095993_4096320_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	3.4e-32	63.7
WP_160204737.1\|4096599_4098648_-	replication endonuclease	F1BUM9	Cronobacter_phage	1.3e-259	66.5
WP_060437277.1\|4098751_4098991_-	DUF2732 family protein	A0A0F7LBR4	Escherichia_phage	5.6e-08	61.1
WP_160204520.1\|4099069_4099519_-	hypothetical protein	F1BUN2	Cronobacter_phage	3.8e-34	56.3
WP_060437281.1\|4099521_4099941_-	hypothetical protein	F1BUN5	Cronobacter_phage	5.7e-32	55.7
WP_047730024.1\|4099943_4100147_-	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_047730023.1\|4100156_4100666_-	hypothetical protein	F1BUN6	Cronobacter_phage	2.2e-38	51.3
WP_047730856.1\|4100698_4100959_-	hypothetical protein	F1BUS7	Erwinia_phage	5.9e-11	46.0
WP_160204521.1\|4101115_4101679_+	phage repressor protein	A0A218M4J1	Erwinia_phage	3.1e-33	42.4
WP_160204522.1\|4101682_4102750_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	1.2e-163	79.9
4109601:4109616	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4953955 : 4962883

environmental_Halophage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_129993646.1\|4953955_4956034_+	hypothetical protein	H9YQA8	environmental_Halophage	1.0e-52	71.9
WP_129993645.1\|4956074_4957292_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	4.7e-26	26.4
WP_033645386.1\|4957423_4957999_-	aminodeoxychorismate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.1e-69	63.2
WP_033645261.1\|4958071_4959595_-	DUF853 family protein	A0A248XCZ8	Klebsiella_phage	1.9e-77	42.6
WP_160204667.1\|4959746_4960472_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_044029984.1\|4960471_4962157_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.2e-224	72.8
WP_060660178.1\|4962313_4962883_-	peptidylprolyl isomerase A	A0A1V0S9I2	Catovirus	1.3e-07	31.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP047680

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2915 : 30136

Salmonella_phage(33.33%)

integrase,transposase

attL 16504:16517|attR 22577:22590

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004197635.1\|2915_3710_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.5e-52	88.7
WP_017899884.1\|3907_4924_-	hypothetical protein	NA	NA	NA	NA
WP_053389906.1\|4934_5249_-	hypothetical protein	NA	NA	NA	NA
WP_025380813.1\|5275_5635_-	hypothetical protein	NA	NA	NA	NA
WP_013023785.1\|5839_6145_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_001568025.1\|6146_6365_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_001261282.1\|6952_7183_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001044770.1\|7179_7596_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_004206609.1\|7669_9232_+	AAA family ATPase	NA	NA	NA	NA
WP_000361404.1\|9216_10239_+	helicase UvrD	NA	NA	NA	NA
WP_000427619.1\|11772_12777_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000429836.1\|12855_13290_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001294663.1\|13361_13712_+	mercuric transport protein MerT	NA	NA	NA	NA
WP_000732292.1\|13725_14001_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001340589.1\|14036_14459_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_000105636.1\|14510_16205_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_001277456.1\|16222_16585_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
16504:16517	attL	NA	NA	NA	NA
WP_000993386.1\|16581_16818_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_000204520.1\|16814_17522_+	EAL domain-containing protein	NA	NA	NA	NA
WP_000935452.1\|17560_18865_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_001067855.1\|18911_19616_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_014343468.1\|19655_20129_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	3.3e-76	99.3
WP_013213985.1\|20251_21232_+\|transposase	IS481-like element ISKpn27 family transposase	A8RHK4	Spiroplasma_virus	2.9e-10	27.4
WP_004199234.1\|21507_22389_+	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_013213989.1\|24248_24674_-	antirestriction protein	A0A2D0W8Z5	Bordetella_virus	5.3e-17	37.3
22577:22590	attR	NA	NA	NA	NA
WP_013213990.1\|24784_25063_-	hypothetical protein	NA	NA	NA	NA
WP_001161490.1\|26605_27166_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_001138014.1\|27169_30136_+\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047679

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP047680

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection